AlfalfaGEDB | Msa0452620

M. sativa cultivar zhongmu-4 / Msa0452620

KEGG: K13963
GO: GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772
PFAM: PF00079.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452620	XP_003602984.1	92.839	391	22	1	35	419	1	391	0.0	732

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452620	sp\|Q9S7T8\|SPZX_ARATH	49.100	389	184	5	39	415	4	390	1.27e-123	366

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452620	G7J5R9	92.839	391	22	1	35	419	1	391	0.0	732

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0452620	0.816390	5.669881e-52	-8.615850e-47
Msa0112750	Msa0452620	0.821730	3.455998e-53	-8.615850e-47
Msa0122590	Msa0452620	0.816043	6.776941e-52	-8.615850e-47
Msa0142220	Msa0452620	0.824138	9.495945e-54	-8.615850e-47
Msa0153910	Msa0452620	0.804443	2.155412e-49	-8.615850e-47
Msa0157290	Msa0452620	0.815311	9.866007e-52	-8.615850e-47
Msa0166870	Msa0452620	0.808096	3.663485e-50	-8.615850e-47
Msa0231000	Msa0452620	0.825309	5.029612e-54	-8.615850e-47
Msa0233300	Msa0452620	0.823234	1.545519e-53	-8.615850e-47
Msa0251320	Msa0452620	0.814291	1.660482e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452620	MtrunA17_Chr3g0133481	92.839	391	22	1	35	419	1	391	0.0	732
Msa0452620	MtrunA17_Chr3g0133511	63.910	399	127	5	35	416	1	399	9.59e-170	481
Msa0452620	MtrunA17_Chr3g0133391	62.725	389	132	4	39	417	4	389	9.82e-161	457
Msa0452620	MtrunA17_Chr3g0083861	59.420	414	149	6	14	415	33	439	8.31e-159	455
Msa0452620	MtrunA17_Chr7g0233731	60.354	396	141	5	33	413	6	400	1.98e-155	447
Msa0452620	MtrunA17_Chr7g0233731	66.129	62	20	1	357	417	399	460	5.05e-16	79.7
Msa0452620	MtrunA17_Chr7g0233701	61.026	390	141	3	39	417	7	396	3.32e-153	439
Msa0452620	MtrunA17_Chr4g0023671	59.137	394	144	5	35	417	1	388	7.75e-153	437
Msa0452620	MtrunA17_Chr3g0133531	71.572	299	84	1	119	416	7	305	1.54e-152	434
Msa0452620	MtrunA17_Chr8g0346621	58.734	395	146	4	33	417	10	397	1.69e-151	434

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452620	AT1G47710.1	49.100	389	184	5	39	415	4	390	1.29e-124	366
Msa0452620	AT1G47710.2	49.100	389	184	5	39	415	31	417	8.62e-124	365
Msa0452620	AT3G45220.1	42.640	394	199	6	40	414	5	390	2.80e-102	309
Msa0452620	AT2G25240.1	43.702	389	194	9	40	414	5	382	3.59e-101	306
Msa0452620	AT2G26390.1	41.327	392	203	8	40	414	5	386	1.25e-93	287
Msa0452620	AT1G64030.1	42.487	386	194	7	39	414	4	371	1.09e-92	285
Msa0452620	AT1G62170.1	42.896	366	173	7	63	414	88	431	3.59e-91	282
Msa0452620	AT2G14540.1	43.490	361	177	4	63	414	55	397	1.06e-87	272
Msa0452620	AT1G62170.2	39.348	399	173	8	63	414	88	464	3.08e-84	265
Msa0452620	AT2G35580.1	38.845	381	201	8	39	414	18	371	8.23e-82	256

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Find 121 sgRNAs with CRISPR-Local

Find 858 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATCAATCGACCCAGG+TGG	0.713008	3_3:-41613600	None:intergenic
AAATGGCGAACTCTCCGATT+TGG	0.294557	3_3:+41620859	Msa0452620:CDS
AACAATCCATCTCTTGCATC+GGG	0.475826	3_3:-41620657	None:intergenic
AAGTGATAGTGGGTGACTTC+AGG	0.357075	3_3:+41620742	Msa0452620:CDS
AATACTTTAGAAACACTAAT+TGG	0.320577	3_3:-41614074	None:intergenic
AATATGTTAGAAACCCAAAT+CGG	0.552609	3_3:-41620873	None:intergenic
AATGGCGAACTCTCCGATTT+GGG	0.362900	3_3:+41620860	Msa0452620:CDS
AATTAGCGATTGATTCGCGG+TGG	0.680650	3_3:-41619852	None:intergenic
AATTATGATCTACCAACAAG+AGG	0.656976	3_3:-41621086	None:intergenic
ACAAATGCATTATACTTCAA+AGG	0.517977	3_3:+41613639	Msa0452620:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACCAAACAGGGAATTTAT+GGG	+	chr3_3:41613539-41613558	Msa0452620:five_prime_UTR	30.0%
TGAAATTTCTGATGTGTTGA+AGG	+	chr3_3:41613995-41614014	Msa0452620:five_prime_UTR	30.0%
TCTTGATGAGAAGAATTATC+TGG	+	chr3_3:41614231-41614250	Msa0452620:five_prime_UTR	30.0%
ATAATTGATGGGATACACAT+TGG	-	chr3_3:41614329-41614348	None:intergenic	30.0%
ATGCTTGGAAAAAGAAAAAC+TGG	-	chr3_3:41614747-41614766	None:intergenic	30.0%
ATTCAGCACATATTTATGCT+TGG	-	chr3_3:41614762-41614781	None:intergenic	30.0%
AATGCAACATCATAAAAAGG+CGG	-	chr3_3:41614970-41614989	None:intergenic	30.0%
GTCAATGCAACATCATAAAA+AGG	-	chr3_3:41614973-41614992	None:intergenic	30.0%
CCTTAAAAAGGAGCTTAAAA+AGG	-	chr3_3:41615171-41615190	None:intergenic	30.0%
CCAATAAAACAAAGAGACAA+AGG	+	chr3_3:41615545-41615564	Msa0452620:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	41613408	41621106	41613408	ID=Msa0452620;Name=Msa0452620
chr3_3	mRNA	41613408	41621106	41613408	ID=Msa0452620-mRNA-1;Parent=Msa0452620;Name=Msa0452620-mRNA-1;_AED=0.33;_eAED=0.33;_QI=943\|0\|0\|1\|0.33\|0.25\|4\|0\|419
chr3_3	exon	41613408	41614445	41613408	ID=Msa0452620-mRNA-1:exon:7571;Parent=Msa0452620-mRNA-1
chr3_3	exon	41619837	41619981	41619837	ID=Msa0452620-mRNA-1:exon:7572;Parent=Msa0452620-mRNA-1
chr3_3	exon	41620000	41620239	41620000	ID=Msa0452620-mRNA-1:exon:7573;Parent=Msa0452620-mRNA-1
chr3_3	exon	41620327	41621106	41620327	ID=Msa0452620-mRNA-1:exon:7574;Parent=Msa0452620-mRNA-1
chr3_3	five_prime_UTR	41613408	41614350	41613408	ID=Msa0452620-mRNA-1:five_prime_utr;Parent=Msa0452620-mRNA-1
chr3_3	CDS	41614351	41614445	41614351	ID=Msa0452620-mRNA-1:cds;Parent=Msa0452620-mRNA-1
chr3_3	CDS	41619837	41619981	41619837	ID=Msa0452620-mRNA-1:cds;Parent=Msa0452620-mRNA-1
chr3_3	CDS	41620000	41620239	41620000	ID=Msa0452620-mRNA-1:cds;Parent=Msa0452620-mRNA-1
chr3_3	CDS	41620327	41621106	41620327	ID=Msa0452620-mRNA-1:cds;Parent=Msa0452620-mRNA-1

Gene Sequence

>Msa0452620

ATGATCTATATATGTGTTAGCTTTGCTTCATGTTTTGAACGGTTGCTGGCTGTATGCTTCATGCATATAGTTTTGATTTTAAATGGTTATTGGTTAAGAAGAATGAGTTACCACCGCGAATCAATCGCTAATTTAACGAAGAATGCTATGAACATCACCAAACATTTGCTATCAAAAACAGAATTCAAGAAGAAGAATGTCGTGCTTTCGCCGTTGTCATTCCAAACTGTGCTCAGCATAGGTCCAACACAACGTCAGCTTCTCTCCTTCCTTGGATCAAAATCCATTGACCATCTCAACTCCTTATCCTCTCACCTCTTTTCCTCTGTGCTAGACGACGCTGCTCCCTATGGTGGTCCACAGTTGTCTTTTGTCAACTCTGTTTGGTTTGAAAAATCCCTTTCTGTTTACCCTTCCTTCAAAGAAATTGTTGATACTAATTATTTTGCCACTCTCAGATCACTTGATTTCATAAACAAGGCTGATGAAGCCGTCAAAAAAGTGAATGTATGGGCAAAAAAAGAGACAAACGGACGTATTAGTGATGTTCTTTCACCTGGGTCTATTAATAGCTTAACTACGCTCATTTTTGCTAATGCACTATACTTTAAAGGAGCATGGCATCAACCATTTGATGCGTCAAAAACAAAAGACCGTGATTTTCACCTTCTCGGTGGCAGCTCAATCAAGGTTCCCTTCATGACTAGCAAAAAGAAGCAGTTTATAAATGCTTTTGATGGTTTTAAGATCCTTCGTCTTCCTTATAAGAAAGGCAACGATATTCGTCAATTCTCTATGTACTTTTTTCTTCCCGATGCAAGAGATGGATTGTTAGCTTTGATTGAGAAAGTGGCTTCCAAACCTGAGATTTTGAAACACAAACTTCCATGTAAGGAAGTGATAGTGGGTGACTTCAGGATTCCACATTTCAAAATTTATTCTGGACTTGAACTTTCTAATGTGTCAAAGGAGTTGGGAGTTGTTTTACCTTTCTCTGACGGAGGTTTGACAAAAATGGCGAACTCTCCGATTTGGGTTTCTAACATATTTCAAAAGTCTTTCATTGAAGTAAATGAAAAAGGCACTGAAGCTGCTGTAGTCACTAGAACCGGACTATCGGGATGTGCTCGTCCTACTTCAATTCCGACCCCAATAGACTTTGTAGCTGACCACCCTTTCATGTTTTTGATAAGAGACGATTTGTCTGGTACAATACTCTTTGTTGGCCAAGTGCTCAATCCTCTTGTTGGTAGATCATAA

Protein sequence

>Msa0452620

MIYICVSFASCFERLLAVCFMHIVLILNGYWLRRMSYHRESIANLTKNAMNITKHLLSKTEFKKKNVVLSPLSFQTVLSIGPTQRQLLSFLGSKSIDHLNSLSSHLFSSVLDDAAPYGGPQLSFVNSVWFEKSLSVYPSFKEIVDTNYFATLRSLDFINKADEAVKKVNVWAKKETNGRISDVLSPGSINSLTTLIFANALYFKGAWHQPFDASKTKDRDFHLLGGSSIKVPFMTSKKKQFINAFDGFKILRLPYKKGNDIRQFSMYFFLPDARDGLLALIEKVASKPEILKHKLPCKEVIVGDFRIPHFKIYSGLELSNVSKELGVVLPFSDGGLTKMANSPIWVSNIFQKSFIEVNEKGTEAAVVTRTGLSGCARPTSIPTPIDFVADHPFMFLIRDDLSGTILFVGQVLNPLVGRS*