Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991830 | XP_003630507.1 | 86.916 | 107 | 14 | 0 | 35 | 141 | 423 | 529 | 3.64e-57 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991830 | G7LHC0 | 86.916 | 107 | 14 | 0 | 35 | 141 | 423 | 529 | 1.74e-57 | 197 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0991830 | 0.808065 | 3.718734e-50 | -8.615850e-47 |
| Msa0018650 | Msa0991830 | 0.824978 | 6.020700e-54 | -8.615850e-47 |
| Msa0062860 | Msa0991830 | 0.809305 | 2.020367e-50 | -8.615850e-47 |
| Msa0095970 | Msa0991830 | 0.802906 | 4.492268e-49 | -8.615850e-47 |
| Msa0105070 | Msa0991830 | 0.800264 | 1.563800e-48 | -8.615850e-47 |
| Msa0112590 | Msa0991830 | 0.808786 | 2.609906e-50 | -8.615850e-47 |
| Msa0647170 | Msa0991830 | 0.807823 | 4.187329e-50 | -8.615850e-47 |
| Msa0661650 | Msa0991830 | 0.803612 | 3.207638e-49 | -8.615850e-47 |
| Msa0669320 | Msa0991830 | 0.803064 | 4.165677e-49 | -8.615850e-47 |
| Msa0701010 | Msa0991830 | 0.837432 | 5.216184e-57 | -8.615850e-47 |
| Msa0731940 | Msa0991830 | 0.811932 | 5.465804e-51 | -8.615850e-47 |
| Msa0735170 | Msa0991830 | 0.810024 | 1.415761e-50 | -8.615850e-47 |
| Msa0743720 | Msa0991830 | 0.805764 | 1.140079e-49 | -8.615850e-47 |
| Msa0824590 | Msa0991830 | 0.812572 | 3.963633e-51 | -8.615850e-47 |
| Msa0828940 | Msa0991830 | 0.802857 | 4.597169e-49 | -8.615850e-47 |
| Msa0833290 | Msa0991830 | 0.805821 | 1.109174e-49 | -8.615850e-47 |
| Msa0157290 | Msa0991830 | 0.808852 | 2.527046e-50 | -8.615850e-47 |
| Msa0158480 | Msa0991830 | 0.816659 | 4.934865e-52 | -8.615850e-47 |
| Msa0178960 | Msa0991830 | 0.824340 | 8.512929e-54 | -8.615850e-47 |
| Msa0179430 | Msa0991830 | 0.801808 | 7.561959e-49 | -8.615850e-47 |
| Msa0180500 | Msa0991830 | 0.825057 | 5.768256e-54 | -8.615850e-47 |
| Msa0188460 | Msa0991830 | 0.801498 | 8.750953e-49 | -8.615850e-47 |
| Msa0215320 | Msa0991830 | -0.811055 | 8.477030e-51 | -8.615850e-47 |
| Msa0231000 | Msa0991830 | 0.833858 | 4.187393e-56 | -8.615850e-47 |
| Msa0371730 | Msa0991830 | 0.803039 | 4.216609e-49 | -8.615850e-47 |
| Msa0395790 | Msa0991830 | 0.800770 | 1.232920e-48 | -8.615850e-47 |
| Msa0402290 | Msa0991830 | 0.805081 | 1.585344e-49 | -8.615850e-47 |
| Msa0424320 | Msa0991830 | 0.828866 | 7.082904e-55 | -8.615850e-47 |
| Msa0430420 | Msa0991830 | 0.808525 | 2.966779e-50 | -8.615850e-47 |
| Msa0436780 | Msa0991830 | 0.808726 | 2.687869e-50 | -8.615850e-47 |
| Msa0450000 | Msa0991830 | 0.800720 | 1.262545e-48 | -8.615850e-47 |
| Msa0479340 | Msa0991830 | 0.820950 | 5.230041e-53 | -8.615850e-47 |
| Msa0980090 | Msa0991830 | 0.809708 | 1.655936e-50 | -8.615850e-47 |
| Msa0991830 | Msa0998690 | 0.812837 | 3.467469e-51 | -8.615850e-47 |
| Msa0991830 | Msa1000860 | 0.801796 | 7.602776e-49 | -8.615850e-47 |
| Msa0991830 | Msa1000880 | 0.803852 | 2.860661e-49 | -8.615850e-47 |
| Msa0991830 | Msa1000890 | 0.826449 | 2.697100e-54 | -8.615850e-47 |
| Msa0991830 | Msa1000900 | 0.833280 | 5.840425e-56 | -8.615850e-47 |
| Msa0991830 | Msa1014540 | 0.843222 | 1.599688e-58 | -8.615850e-47 |
| Msa0991830 | Msa1014990 | 0.819417 | 1.174278e-52 | -8.615850e-47 |
| Msa0991830 | Msa1028230 | 0.804889 | 1.739434e-49 | -8.615850e-47 |
| Msa0991830 | Msa1030970 | 0.815654 | 8.277511e-52 | -8.615850e-47 |
| Msa0991830 | Msa1057920 | 0.807742 | 4.355975e-50 | -8.615850e-47 |
| Msa0991830 | Msa1075220 | -0.805141 | 1.540358e-49 | -8.615850e-47 |
| Msa0991830 | Msa1075650 | 0.802437 | 5.613992e-49 | -8.615850e-47 |
| Msa0991830 | Msa1082580 | 0.807915 | 4.003454e-50 | -8.615850e-47 |
| Msa0991830 | Msa1112300 | 0.813903 | 2.022270e-51 | -8.615850e-47 |
| Msa0991830 | Msa1113170 | 0.800776 | 1.229613e-48 | -8.615850e-47 |
| Msa0991830 | Msa1115230 | 0.825542 | 4.430212e-54 | -8.615850e-47 |
| Msa0991830 | Msa1121480 | 0.814648 | 1.384100e-51 | -8.615850e-47 |
| Msa0991830 | Msa1121490 | 0.815235 | 1.025809e-51 | -8.615850e-47 |
| Msa0991830 | Msa1136090 | 0.801403 | 9.153979e-49 | -8.615850e-47 |
| Msa0991830 | Msa1137570 | 0.803076 | 4.142416e-49 | -8.615850e-47 |
| Msa0991830 | Msa1149360 | 0.822439 | 2.367351e-53 | -8.615850e-47 |
| Msa0991830 | Msa1162550 | -0.802778 | 4.772970e-49 | -8.615850e-47 |
| Msa0991830 | Msa1174040 | 0.801482 | 8.820482e-49 | -8.615850e-47 |
| Msa0991830 | Msa1184420 | 0.817666 | 2.929506e-52 | -8.615850e-47 |
| Msa0991830 | Msa1230430 | 0.801234 | 9.911278e-49 | -8.615850e-47 |
| Msa0991830 | Msa1244250 | 0.824272 | 8.828467e-54 | -8.615850e-47 |
| Msa0991830 | Msa1252140 | 0.802486 | 5.484449e-49 | -8.615850e-47 |
| Msa0991830 | Msa1253000 | 0.807286 | 5.444641e-50 | -8.615850e-47 |
| Msa0991830 | Msa1277660 | 0.826397 | 2.774973e-54 | -8.615850e-47 |
| Msa0991830 | Msa1284680 | 0.842438 | 2.586226e-58 | -8.615850e-47 |
| Msa0991830 | Msa1286800 | 0.800647 | 1.306463e-48 | -8.615850e-47 |
| Msa0991830 | Msa1288560 | 0.822117 | 2.812735e-53 | -8.615850e-47 |
| Msa0991830 | Msa1348950 | 0.808326 | 3.272177e-50 | -8.615850e-47 |
| Msa0991830 | Msa1366810 | 0.803500 | 3.384183e-49 | -8.615850e-47 |
| Msa0991830 | Msa1372760 | 0.803799 | 2.933419e-49 | -8.615850e-47 |
| Msa0991830 | Msa1410680 | 0.805900 | 1.067525e-49 | -8.615850e-47 |
| Msa0991830 | Msa1420820 | 0.808263 | 3.374230e-50 | -8.615850e-47 |
| Msa0991830 | Msa1458750 | 0.804604 | 1.994518e-49 | -8.615850e-47 |
| Msa0251320 | Msa0991830 | 0.802246 | 6.143967e-49 | -8.615850e-47 |
| Msa0321310 | Msa0991830 | 0.815310 | 9.871966e-52 | -8.615850e-47 |
| Msa0337900 | Msa0991830 | 0.831344 | 1.760251e-55 | -8.615850e-47 |
| Msa0342750 | Msa0991830 | 0.800447 | 1.434885e-48 | -8.615850e-47 |
| Msa0355220 | Msa0991830 | 0.800846 | 1.190149e-48 | -8.615850e-47 |
| Msa0493000 | Msa0991830 | 0.805128 | 1.550179e-49 | -8.615850e-47 |
| Msa0523940 | Msa0991830 | 0.832792 | 7.724406e-56 | -8.615850e-47 |
| Msa0529040 | Msa0991830 | 0.802717 | 4.913833e-49 | -8.615850e-47 |
| Msa0530940 | Msa0991830 | 0.808926 | 2.435800e-50 | -8.615850e-47 |
| Msa0585230 | Msa0991830 | 0.815800 | 7.677115e-52 | -8.615850e-47 |
| Msa0844490 | Msa0991830 | 0.818707 | 1.703523e-52 | -8.615850e-47 |
| Msa0849030 | Msa0991830 | 0.800266 | 1.562139e-48 | -8.615850e-47 |
| Msa0857640 | Msa0991830 | 0.803741 | 3.016762e-49 | -8.615850e-47 |
| Msa0864070 | Msa0991830 | 0.805615 | 1.225234e-49 | -8.615850e-47 |
| Msa0877250 | Msa0991830 | 0.831379 | 1.726340e-55 | -8.615850e-47 |
| Msa0880140 | Msa0991830 | 0.802688 | 4.982311e-49 | -8.615850e-47 |
| Msa0888420 | Msa0991830 | 0.842105 | 3.168508e-58 | -8.615850e-47 |
| Msa0890310 | Msa0991830 | 0.808145 | 3.576548e-50 | -8.615850e-47 |
| Msa0899430 | Msa0991830 | 0.827041 | 1.947686e-54 | -8.615850e-47 |
| Msa0899450 | Msa0991830 | 0.819596 | 1.068649e-52 | -8.615850e-47 |
| Msa0907260 | Msa0991830 | 0.814108 | 1.822330e-51 | -8.615850e-47 |
| Msa0914760 | Msa0991830 | 0.841619 | 4.258651e-58 | -8.615850e-47 |
| Msa0917810 | Msa0991830 | 0.805340 | 1.399525e-49 | -8.615850e-47 |
| Msa0927380 | Msa0991830 | 0.806722 | 7.164412e-50 | -8.615850e-47 |
| Msa0936300 | Msa0991830 | 0.809622 | 1.727872e-50 | -8.615850e-47 |
| Msa0952720 | Msa0991830 | 0.820832 | 5.568346e-53 | -8.615850e-47 |
| Msa0953120 | Msa0991830 | 0.886383 | 3.588477e-72 | -8.615850e-47 |
| Msa0956270 | Msa0991830 | 0.808126 | 3.609967e-50 | -8.615850e-47 |
| Msa0958550 | Msa0991830 | 0.830392 | 3.013754e-55 | -8.615850e-47 |
| Msa0966750 | Msa0991830 | 0.825612 | 4.263761e-54 | -8.615850e-47 |
| Msa0969520 | Msa0991830 | 0.812525 | 4.058396e-51 | -8.615850e-47 |
| Msa0973100 | Msa0991830 | 0.815532 | 8.810802e-52 | -8.615850e-47 |
| Msa0974080 | Msa0991830 | 0.811133 | 8.152832e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991830 | MtrunA17_Chr8g0386831 | 86.916 | 107 | 14 | 0 | 35 | 141 | 423 | 529 | 3.35e-61 | 197 |
| Msa0991830 | MtrunA17_Chr8g0386841 | 82.243 | 107 | 19 | 0 | 35 | 141 | 400 | 506 | 3.35e-57 | 186 |
| Msa0991830 | MtrunA17_Chr5g0397411 | 69.159 | 107 | 33 | 0 | 35 | 141 | 421 | 527 | 1.17e-46 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991830 | AT4G11560.1 | 62.376 | 101 | 38 | 0 | 35 | 135 | 437 | 537 | 8.93e-39 | 137 |
| Msa0991830 | AT4G11560.2 | 64.706 | 51 | 18 | 0 | 35 | 85 | 437 | 487 | 2.24e-16 | 75.1 |
Find 23 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTACGCCGTTTATTAAA+TGG | 0.186955 | 6_4:+58062394 | Msa0991830:CDS |
| GCATCGCTTGTGGTTCTTCC+TGG | 0.247620 | 6_4:+58063596 | Msa0991830:CDS |
| TGGCTCGTCGGGCTCATTCT+TGG | 0.299109 | 6_4:-58063280 | None:intergenic |
| AATCTGATGCATCTAATGTT+AGG | 0.343197 | 6_4:-58063645 | None:intergenic |
| CTAGCTCTCCATTTAATAAA+CGG | 0.393751 | 6_4:-58062402 | None:intergenic |
| GTCGTATTATGATAGAATTA+AGG | 0.400823 | 6_4:+58062235 | Msa0991830:CDS |
| TTAACGTGTTAACCATATAT+CGG | 0.408741 | 6_4:-58063485 | None:intergenic |
| TATGACACCTACTGAATTGA+AGG | 0.438751 | 6_4:+58062444 | Msa0991830:CDS |
| AGGACATGCTAACCGATATA+TGG | 0.442148 | 6_4:+58063473 | Msa0991830:CDS |
| CTGCATGTGTCGTGGCTCGT+CGG | 0.450933 | 6_4:-58063292 | None:intergenic |
| CGCATCACAAGAGGCAAACC+AGG | 0.451251 | 6_4:-58063614 | None:intergenic |
| CTCATTCTTGGATATTTCCT+CGG | 0.451373 | 6_4:-58063268 | None:intergenic |
| TGCATGTGTCGTGGCTCGTC+GGG | 0.470904 | 6_4:-58063291 | None:intergenic |
| CAGCTGGAATGCATCGCTTG+TGG | 0.505100 | 6_4:+58063586 | Msa0991830:intron |
| CTGGTTTGCCTCTTGTGATG+CGG | 0.539664 | 6_4:+58063615 | Msa0991830:CDS |
| CGACGAGCCACGACACATGC+AGG | 0.570932 | 6_4:+58063293 | Msa0991830:CDS |
| TTAGATACCTTCAATTCAGT+AGG | 0.571340 | 6_4:-58062451 | None:intergenic |
| GTGATGGATATTATCTGTGC+AGG | 0.602192 | 6_4:+58063453 | Msa0991830:CDS |
| AGAATGATGTGGTCGAGTAA+CGG | 0.608752 | 6_4:+58062179 | Msa0991830:CDS |
| CAAGGAGGCTTTGACTGCCG+AGG | 0.610442 | 6_4:+58063251 | Msa0991830:intron |
| GACAGACACCGCATCACAAG+AGG | 0.650846 | 6_4:-58063623 | None:intergenic |
| AAAGTGACCTGCATGTGTCG+TGG | 0.700546 | 6_4:-58063300 | None:intergenic |
| ATGATGTGGTCGAGTAACGG+TGG | 0.710431 | 6_4:+58062182 | Msa0991830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAGATTAGAAATA+TGG | - | chr6_4:58062483-58062502 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGATTAGAAATA+TGG | - | chr6_4:58062483-58062502 | None:intergenic | 10.0% |
| !! | AAATATGTTGAAAATGATAA+AGG | - | chr6_4:58062631-58062650 | None:intergenic | 15.0% |
| !! | TTATATTATCTGTTAAATTG+TGG | + | chr6_4:58063342-58063361 | Msa0991830:intron | 15.0% |
| !! | TATATTATCTGTTAAATTGT+GGG | + | chr6_4:58063343-58063362 | Msa0991830:intron | 15.0% |
| !! | AAATATGTTGAAAATGATAA+AGG | - | chr6_4:58062631-58062650 | None:intergenic | 15.0% |
| !! | TTATATTATCTGTTAAATTG+TGG | + | chr6_4:58063342-58063361 | Msa0991830:intron | 15.0% |
| !! | TATATTATCTGTTAAATTGT+GGG | + | chr6_4:58063343-58063362 | Msa0991830:intron | 15.0% |
| !!! | TTATGATAGAATTAAGGTTT+TGG | + | chr6_4:58062241-58062260 | Msa0991830:intron | 20.0% |
| !!! | TATGATAGAATTAAGGTTTT+GGG | + | chr6_4:58062242-58062261 | Msa0991830:intron | 20.0% |
| !! | ATGAATTGTTCTGTAAAATA+AGG | - | chr6_4:58062372-58062391 | None:intergenic | 20.0% |
| !!! | GTCATATTCAATATTTTTGA+AGG | - | chr6_4:58062430-58062449 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCTTGTATTTTCA+TGG | + | chr6_4:58062859-58062878 | Msa0991830:intron | 20.0% |
| !! | TAACTTTCAAAAGATTAATC+TGG | + | chr6_4:58063195-58063214 | Msa0991830:intron | 20.0% |
| !! | TTATTGAATATTTGAACTCA+AGG | + | chr6_4:58063233-58063252 | Msa0991830:intron | 20.0% |
| !! | AACAGATAATATAAGAATGT+CGG | - | chr6_4:58063336-58063355 | None:intergenic | 20.0% |
| !!! | TTATGATAGAATTAAGGTTT+TGG | + | chr6_4:58062241-58062260 | Msa0991830:intron | 20.0% |
| !!! | TATGATAGAATTAAGGTTTT+GGG | + | chr6_4:58062242-58062261 | Msa0991830:intron | 20.0% |
| !! | ATGAATTGTTCTGTAAAATA+AGG | - | chr6_4:58062372-58062391 | None:intergenic | 20.0% |
| !!! | GTCATATTCAATATTTTTGA+AGG | - | chr6_4:58062430-58062449 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCTTGTATTTTCA+TGG | + | chr6_4:58062859-58062878 | Msa0991830:intron | 20.0% |
| !! | TAACTTTCAAAAGATTAATC+TGG | + | chr6_4:58063195-58063214 | Msa0991830:intron | 20.0% |
| !! | TTATTGAATATTTGAACTCA+AGG | + | chr6_4:58063233-58063252 | Msa0991830:intron | 20.0% |
| !! | AACAGATAATATAAGAATGT+CGG | - | chr6_4:58063336-58063355 | None:intergenic | 20.0% |
| !! | TTTTAACATTCAGAATGATG+TGG | + | chr6_4:58062168-58062187 | Msa0991830:CDS | 25.0% |
| ! | GTCGTATTATGATAGAATTA+AGG | + | chr6_4:58062235-58062254 | Msa0991830:CDS | 25.0% |
| !! | ATGATAGAATTAAGGTTTTG+GGG | + | chr6_4:58062243-58062262 | Msa0991830:intron | 25.0% |
| !! | AAAATTTTTGCAAGTTGTGA+TGG | + | chr6_4:58062323-58062342 | Msa0991830:intron | 25.0% |
| !! | AAATTTTCCAACCTTTTCTT+TGG | + | chr6_4:58062774-58062793 | Msa0991830:intron | 25.0% |
| !! | AATTTTCCAACCTTTTCTTT+GGG | + | chr6_4:58062775-58062794 | Msa0991830:intron | 25.0% |
| ! | TATCATCAATTGATCACATA+CGG | - | chr6_4:58062929-58062948 | None:intergenic | 25.0% |
| !!! | AATTTTTTGCGATGTTTTGA+AGG | + | chr6_4:58063016-58063035 | Msa0991830:intron | 25.0% |
| !! | TTCTCAATTTCTAAAAGTAC+AGG | - | chr6_4:58063100-58063119 | None:intergenic | 25.0% |
| ! | ACAGATAATATAAGAATGTC+GGG | - | chr6_4:58063335-58063354 | None:intergenic | 25.0% |
| ! | AATTGTGGGAATATTATCTA+TGG | + | chr6_4:58063357-58063376 | Msa0991830:intron | 25.0% |
| !!! | TGGAATATTAGCTTTTCTAT+TGG | + | chr6_4:58063377-58063396 | Msa0991830:intron | 25.0% |
| ! | TTAACGTGTTAACCATATAT+CGG | - | chr6_4:58063488-58063507 | None:intergenic | 25.0% |
| !! | TTTTAACATTCAGAATGATG+TGG | + | chr6_4:58062168-58062187 | Msa0991830:CDS | 25.0% |
| ! | GTCGTATTATGATAGAATTA+AGG | + | chr6_4:58062235-58062254 | Msa0991830:CDS | 25.0% |
| !! | ATGATAGAATTAAGGTTTTG+GGG | + | chr6_4:58062243-58062262 | Msa0991830:intron | 25.0% |
| !! | AAAATTTTTGCAAGTTGTGA+TGG | + | chr6_4:58062323-58062342 | Msa0991830:intron | 25.0% |
| !! | AAATTTTCCAACCTTTTCTT+TGG | + | chr6_4:58062774-58062793 | Msa0991830:intron | 25.0% |
| !! | AATTTTCCAACCTTTTCTTT+GGG | + | chr6_4:58062775-58062794 | Msa0991830:intron | 25.0% |
| ! | TATCATCAATTGATCACATA+CGG | - | chr6_4:58062929-58062948 | None:intergenic | 25.0% |
| !!! | AATTTTTTGCGATGTTTTGA+AGG | + | chr6_4:58063016-58063035 | Msa0991830:intron | 25.0% |
| !! | TTCTCAATTTCTAAAAGTAC+AGG | - | chr6_4:58063100-58063119 | None:intergenic | 25.0% |
| ! | ACAGATAATATAAGAATGTC+GGG | - | chr6_4:58063335-58063354 | None:intergenic | 25.0% |
| ! | AATTGTGGGAATATTATCTA+TGG | + | chr6_4:58063357-58063376 | Msa0991830:intron | 25.0% |
| !!! | TGGAATATTAGCTTTTCTAT+TGG | + | chr6_4:58063377-58063396 | Msa0991830:intron | 25.0% |
| ! | TTAACGTGTTAACCATATAT+CGG | - | chr6_4:58063488-58063507 | None:intergenic | 25.0% |
| !! | TGATAGAATTAAGGTTTTGG+GGG | + | chr6_4:58062244-58062263 | Msa0991830:intron | 30.0% |
| TTAACTAAGAACAATCTGCA+AGG | - | chr6_4:58062286-58062305 | None:intergenic | 30.0% | |
| ! | CTAGCTCTCCATTTAATAAA+CGG | - | chr6_4:58062405-58062424 | None:intergenic | 30.0% |
| TTAGATACCTTCAATTCAGT+AGG | - | chr6_4:58062454-58062473 | None:intergenic | 30.0% | |
| TTAATAGCGTACAATTGACA+GGG | - | chr6_4:58062552-58062571 | None:intergenic | 30.0% | |
| ATTAATAGCGTACAATTGAC+AGG | - | chr6_4:58062553-58062572 | None:intergenic | 30.0% | |
| ! | TTTTGTTCAGTCAAAGCAAT+TGG | + | chr6_4:58062600-58062619 | Msa0991830:intron | 30.0% |
| !! | AACGCGTTCTAAGAAAAAAT+TGG | + | chr6_4:58062745-58062764 | Msa0991830:intron | 30.0% |
| ! | ATTTTCCAACCTTTTCTTTG+GGG | + | chr6_4:58062776-58062795 | Msa0991830:intron | 30.0% |
| GTTAGATCTTATCTGATTAG+AGG | - | chr6_4:58062836-58062855 | None:intergenic | 30.0% | |
| TTGTATTGTGTTGAACTTAG+TGG | + | chr6_4:58063043-58063062 | Msa0991830:intron | 30.0% | |
| TTGAATATTTGAACTCAAGG+AGG | + | chr6_4:58063236-58063255 | Msa0991830:intron | 30.0% | |
| ATAATATAAGAATGTCGGGA+TGG | - | chr6_4:58063331-58063350 | None:intergenic | 30.0% | |
| AATCTGATGCATCTAATGTT+AGG | - | chr6_4:58063648-58063667 | None:intergenic | 30.0% | |
| !! | TGATAGAATTAAGGTTTTGG+GGG | + | chr6_4:58062244-58062263 | Msa0991830:intron | 30.0% |
| TTAACTAAGAACAATCTGCA+AGG | - | chr6_4:58062286-58062305 | None:intergenic | 30.0% | |
| ! | CTAGCTCTCCATTTAATAAA+CGG | - | chr6_4:58062405-58062424 | None:intergenic | 30.0% |
| TTAGATACCTTCAATTCAGT+AGG | - | chr6_4:58062454-58062473 | None:intergenic | 30.0% | |
| TTAATAGCGTACAATTGACA+GGG | - | chr6_4:58062552-58062571 | None:intergenic | 30.0% | |
| ATTAATAGCGTACAATTGAC+AGG | - | chr6_4:58062553-58062572 | None:intergenic | 30.0% | |
| ! | TTTTGTTCAGTCAAAGCAAT+TGG | + | chr6_4:58062600-58062619 | Msa0991830:intron | 30.0% |
| !! | AACGCGTTCTAAGAAAAAAT+TGG | + | chr6_4:58062745-58062764 | Msa0991830:intron | 30.0% |
| ! | ATTTTCCAACCTTTTCTTTG+GGG | + | chr6_4:58062776-58062795 | Msa0991830:intron | 30.0% |
| GTTAGATCTTATCTGATTAG+AGG | - | chr6_4:58062836-58062855 | None:intergenic | 30.0% | |
| TTGTATTGTGTTGAACTTAG+TGG | + | chr6_4:58063043-58063062 | Msa0991830:intron | 30.0% | |
| TTGAATATTTGAACTCAAGG+AGG | + | chr6_4:58063236-58063255 | Msa0991830:intron | 30.0% | |
| ATAATATAAGAATGTCGGGA+TGG | - | chr6_4:58063331-58063350 | None:intergenic | 30.0% | |
| AATCTGATGCATCTAATGTT+AGG | - | chr6_4:58063648-58063667 | None:intergenic | 30.0% | |
| !!! | GATAGAATTAAGGTTTTGGG+GGG | + | chr6_4:58062245-58062264 | Msa0991830:intron | 35.0% |
| CTGTTACGCCGTTTATTAAA+TGG | + | chr6_4:58062394-58062413 | Msa0991830:CDS | 35.0% | |
| TATGACACCTACTGAATTGA+AGG | + | chr6_4:58062444-58062463 | Msa0991830:CDS | 35.0% | |
| TAAAAACCAAACAGCACATG+AGG | - | chr6_4:58063123-58063142 | None:intergenic | 35.0% | |
| CTCATTCTTGGATATTTCCT+CGG | - | chr6_4:58063271-58063290 | None:intergenic | 35.0% | |
| ATTTGCAACCAGCAAAAAGT+TGG | + | chr6_4:58063429-58063448 | Msa0991830:CDS | 35.0% | |
| !!! | GATAGAATTAAGGTTTTGGG+GGG | + | chr6_4:58062245-58062264 | Msa0991830:intron | 35.0% |
| CTGTTACGCCGTTTATTAAA+TGG | + | chr6_4:58062394-58062413 | Msa0991830:CDS | 35.0% | |
| TATGACACCTACTGAATTGA+AGG | + | chr6_4:58062444-58062463 | Msa0991830:CDS | 35.0% | |
| TAAAAACCAAACAGCACATG+AGG | - | chr6_4:58063123-58063142 | None:intergenic | 35.0% | |
| CTCATTCTTGGATATTTCCT+CGG | - | chr6_4:58063271-58063290 | None:intergenic | 35.0% | |
| ATTTGCAACCAGCAAAAAGT+TGG | + | chr6_4:58063429-58063448 | Msa0991830:CDS | 35.0% | |
| AGAATGATGTGGTCGAGTAA+CGG | + | chr6_4:58062179-58062198 | Msa0991830:CDS | 40.0% | |
| TTTCATGGCTGCATCATTCT+TGG | + | chr6_4:58062874-58062893 | Msa0991830:intron | 40.0% | |
| TTCATGGCTGCATCATTCTT+GGG | + | chr6_4:58062875-58062894 | Msa0991830:intron | 40.0% | |
| !! | GTGATGGATATTATCTGTGC+AGG | + | chr6_4:58063453-58063472 | Msa0991830:CDS | 40.0% |
| AGGACATGCTAACCGATATA+TGG | + | chr6_4:58063473-58063492 | Msa0991830:CDS | 40.0% | |
| GCTGAAGTCATAGAAATAGC+AGG | - | chr6_4:58063545-58063564 | None:intergenic | 40.0% | |
| !!! | TGTTGCTCTACTTTTTCAGC+TGG | + | chr6_4:58063570-58063589 | Msa0991830:intron | 40.0% |
| AGAATGATGTGGTCGAGTAA+CGG | + | chr6_4:58062179-58062198 | Msa0991830:CDS | 40.0% | |
| TTTCATGGCTGCATCATTCT+TGG | + | chr6_4:58062874-58062893 | Msa0991830:intron | 40.0% | |
| TTCATGGCTGCATCATTCTT+GGG | + | chr6_4:58062875-58062894 | Msa0991830:intron | 40.0% | |
| !! | GTGATGGATATTATCTGTGC+AGG | + | chr6_4:58063453-58063472 | Msa0991830:CDS | 40.0% |
| AGGACATGCTAACCGATATA+TGG | + | chr6_4:58063473-58063492 | Msa0991830:CDS | 40.0% | |
| GCTGAAGTCATAGAAATAGC+AGG | - | chr6_4:58063545-58063564 | None:intergenic | 40.0% | |
| !!! | TGTTGCTCTACTTTTTCAGC+TGG | + | chr6_4:58063570-58063589 | Msa0991830:intron | 40.0% |
| !!! | ATTAAGGTTTTGGGGGGCAA+TGG | + | chr6_4:58062251-58062270 | Msa0991830:intron | 45.0% |
| ! | TGAGAACCTCATGTGCTGTT+TGG | + | chr6_4:58063114-58063133 | Msa0991830:intron | 45.0% |
| !!! | ATTAAGGTTTTGGGGGGCAA+TGG | + | chr6_4:58062251-58062270 | Msa0991830:intron | 45.0% |
| ! | TGAGAACCTCATGTGCTGTT+TGG | + | chr6_4:58063114-58063133 | Msa0991830:intron | 45.0% |
| ATGATGTGGTCGAGTAACGG+TGG | + | chr6_4:58062182-58062201 | Msa0991830:CDS | 50.0% | |
| AACTCCTCGCCCCAAAGAAA+AGG | - | chr6_4:58062788-58062807 | None:intergenic | 50.0% | |
| ! | TTTGGGGCGAGGAGTTAGAA+GGG | + | chr6_4:58062792-58062811 | Msa0991830:intron | 50.0% |
| AAAGTGACCTGCATGTGTCG+TGG | - | chr6_4:58063303-58063322 | None:intergenic | 50.0% | |
| ! | CCATCACGCCAACTTTTTGC+TGG | - | chr6_4:58063440-58063459 | None:intergenic | 50.0% |
| CCAGCAAAAAGTTGGCGTGA+TGG | + | chr6_4:58063437-58063456 | Msa0991830:CDS | 50.0% | |
| ! | CTGGTTTGCCTCTTGTGATG+CGG | + | chr6_4:58063615-58063634 | Msa0991830:CDS | 50.0% |
| ATGATGTGGTCGAGTAACGG+TGG | + | chr6_4:58062182-58062201 | Msa0991830:CDS | 50.0% | |
| AACTCCTCGCCCCAAAGAAA+AGG | - | chr6_4:58062788-58062807 | None:intergenic | 50.0% | |
| ! | TTTGGGGCGAGGAGTTAGAA+GGG | + | chr6_4:58062792-58062811 | Msa0991830:intron | 50.0% |
| AAAGTGACCTGCATGTGTCG+TGG | - | chr6_4:58063303-58063322 | None:intergenic | 50.0% | |
| ! | CCATCACGCCAACTTTTTGC+TGG | - | chr6_4:58063440-58063459 | None:intergenic | 50.0% |
| CCAGCAAAAAGTTGGCGTGA+TGG | + | chr6_4:58063437-58063456 | Msa0991830:CDS | 50.0% | |
| ! | CTGGTTTGCCTCTTGTGATG+CGG | + | chr6_4:58063615-58063634 | Msa0991830:CDS | 50.0% |
| TTGGGGGGCAATGGTTCTTC+TGG | + | chr6_4:58062260-58062279 | Msa0991830:intron | 55.0% | |
| CCTCGCCCCAAAGAAAAGGT+TGG | - | chr6_4:58062784-58062803 | None:intergenic | 55.0% | |
| !!! | CCAACCTTTTCTTTGGGGCG+AGG | + | chr6_4:58062781-58062800 | Msa0991830:intron | 55.0% |
| !! | CTTTGGGGCGAGGAGTTAGA+AGG | + | chr6_4:58062791-58062810 | Msa0991830:intron | 55.0% |
| TTGGGGCGAGGAGTTAGAAG+GGG | + | chr6_4:58062793-58062812 | Msa0991830:intron | 55.0% | |
| CAGCTGGAATGCATCGCTTG+TGG | + | chr6_4:58063586-58063605 | Msa0991830:intron | 55.0% | |
| GCATCGCTTGTGGTTCTTCC+TGG | + | chr6_4:58063596-58063615 | Msa0991830:CDS | 55.0% | |
| CGCATCACAAGAGGCAAACC+AGG | - | chr6_4:58063617-58063636 | None:intergenic | 55.0% | |
| GACAGACACCGCATCACAAG+AGG | - | chr6_4:58063626-58063645 | None:intergenic | 55.0% | |
| TTGGGGGGCAATGGTTCTTC+TGG | + | chr6_4:58062260-58062279 | Msa0991830:intron | 55.0% | |
| CCTCGCCCCAAAGAAAAGGT+TGG | - | chr6_4:58062784-58062803 | None:intergenic | 55.0% | |
| !!! | CCAACCTTTTCTTTGGGGCG+AGG | + | chr6_4:58062781-58062800 | Msa0991830:intron | 55.0% |
| !! | CTTTGGGGCGAGGAGTTAGA+AGG | + | chr6_4:58062791-58062810 | Msa0991830:intron | 55.0% |
| TTGGGGCGAGGAGTTAGAAG+GGG | + | chr6_4:58062793-58062812 | Msa0991830:intron | 55.0% | |
| CAGCTGGAATGCATCGCTTG+TGG | + | chr6_4:58063586-58063605 | Msa0991830:intron | 55.0% | |
| GCATCGCTTGTGGTTCTTCC+TGG | + | chr6_4:58063596-58063615 | Msa0991830:CDS | 55.0% | |
| CGCATCACAAGAGGCAAACC+AGG | - | chr6_4:58063617-58063636 | None:intergenic | 55.0% | |
| GACAGACACCGCATCACAAG+AGG | - | chr6_4:58063626-58063645 | None:intergenic | 55.0% | |
| ! | CAAGGAGGCTTTGACTGCCG+AGG | + | chr6_4:58063251-58063270 | Msa0991830:intron | 60.0% |
| TGGCTCGTCGGGCTCATTCT+TGG | - | chr6_4:58063283-58063302 | None:intergenic | 60.0% | |
| TGCATGTGTCGTGGCTCGTC+GGG | - | chr6_4:58063294-58063313 | None:intergenic | 60.0% | |
| CTGCATGTGTCGTGGCTCGT+CGG | - | chr6_4:58063295-58063314 | None:intergenic | 60.0% | |
| ! | CAAGGAGGCTTTGACTGCCG+AGG | + | chr6_4:58063251-58063270 | Msa0991830:intron | 60.0% |
| TGGCTCGTCGGGCTCATTCT+TGG | - | chr6_4:58063283-58063302 | None:intergenic | 60.0% | |
| TGCATGTGTCGTGGCTCGTC+GGG | - | chr6_4:58063294-58063313 | None:intergenic | 60.0% | |
| CTGCATGTGTCGTGGCTCGT+CGG | - | chr6_4:58063295-58063314 | None:intergenic | 60.0% | |
| CGACGAGCCACGACACATGC+AGG | + | chr6_4:58063293-58063312 | Msa0991830:CDS | 65.0% | |
| CGACGAGCCACGACACATGC+AGG | + | chr6_4:58063293-58063312 | Msa0991830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 58062149 | 58063675 | 58062149 | ID=Msa0991830;Name=Msa0991830 |
| chr6_4 | mRNA | 58062149 | 58063675 | 58062149 | ID=Msa0991830-mRNA-1;Parent=Msa0991830;Name=Msa0991830-mRNA-1;_AED=0.64;_eAED=0.64;_QI=0|0|0|0.6|1|1|5|0|141 |
| chr6_4 | exon | 58062149 | 58062256 | 58062149 | ID=Msa0991830-mRNA-1:exon:11533;Parent=Msa0991830-mRNA-1 |
| chr6_4 | exon | 58062382 | 58062465 | 58062382 | ID=Msa0991830-mRNA-1:exon:11534;Parent=Msa0991830-mRNA-1 |
| chr6_4 | exon | 58063255 | 58063314 | 58063255 | ID=Msa0991830-mRNA-1:exon:11535;Parent=Msa0991830-mRNA-1 |
| chr6_4 | exon | 58063408 | 58063494 | 58063408 | ID=Msa0991830-mRNA-1:exon:11536;Parent=Msa0991830-mRNA-1 |
| chr6_4 | exon | 58063589 | 58063675 | 58063589 | ID=Msa0991830-mRNA-1:exon:11537;Parent=Msa0991830-mRNA-1 |
| chr6_4 | CDS | 58062149 | 58062256 | 58062149 | ID=Msa0991830-mRNA-1:cds;Parent=Msa0991830-mRNA-1 |
| chr6_4 | CDS | 58062382 | 58062465 | 58062382 | ID=Msa0991830-mRNA-1:cds;Parent=Msa0991830-mRNA-1 |
| chr6_4 | CDS | 58063255 | 58063314 | 58063255 | ID=Msa0991830-mRNA-1:cds;Parent=Msa0991830-mRNA-1 |
| chr6_4 | CDS | 58063408 | 58063494 | 58063408 | ID=Msa0991830-mRNA-1:cds;Parent=Msa0991830-mRNA-1 |
| chr6_4 | CDS | 58063589 | 58063675 | 58063589 | ID=Msa0991830-mRNA-1:cds;Parent=Msa0991830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
