Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983460 | YP_009237616.1 | 91.529 | 484 | 2 | 5 | 1 | 445 | 1 | 484 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983460 | sp|P05493|ATPAM_PEA | 91.116 | 484 | 4 | 5 | 1 | 445 | 1 | 484 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983460 | A0A126TGR5 | 91.529 | 484 | 2 | 5 | 1 | 445 | 1 | 484 | 0.0 | 860 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069500 | Msa0983460 | 0.827177 | 1.807236e-54 | -8.615850e-47 |
| Msa0069510 | Msa0983460 | 0.850613 | 1.516199e-60 | -8.615850e-47 |
| Msa0069520 | Msa0983460 | 0.828443 | 8.966591e-55 | -8.615850e-47 |
| Msa0697990 | Msa0983460 | 0.919939 | 2.402461e-87 | -8.615850e-47 |
| Msa0983130 | Msa0983460 | 0.839688 | 1.364720e-57 | -8.615850e-47 |
| Msa0983170 | Msa0983460 | 0.881666 | 1.986073e-70 | -8.615850e-47 |
| Msa0983180 | Msa0983460 | 0.874668 | 5.641103e-68 | -8.615850e-47 |
| Msa0983190 | Msa0983460 | 0.937216 | 4.965677e-98 | -8.615850e-47 |
| Msa0983210 | Msa0983460 | 0.869970 | 2.076019e-66 | -8.615850e-47 |
| Msa0983220 | Msa0983460 | 0.830090 | 3.570746e-55 | -8.615850e-47 |
| Msa0983230 | Msa0983460 | 0.852928 | 3.345702e-61 | -8.615850e-47 |
| Msa0983260 | Msa0983460 | 0.880289 | 6.206427e-70 | -8.615850e-47 |
| Msa0983300 | Msa0983460 | 0.930964 | 7.589511e-94 | -8.615850e-47 |
| Msa0983310 | Msa0983460 | 0.822041 | 2.928957e-53 | -8.615850e-47 |
| Msa0983320 | Msa0983460 | 0.867860 | 1.001921e-65 | -8.615850e-47 |
| Msa0983350 | Msa0983460 | 0.862007 | 6.873976e-64 | -8.615850e-47 |
| Msa0983360 | Msa0983460 | 0.854448 | 1.222722e-61 | -8.615850e-47 |
| Msa0983460 | Msa0983490 | 0.839291 | 1.730533e-57 | -8.615850e-47 |
| Msa0983460 | Msa0983500 | 0.884464 | 1.874810e-71 | -8.615850e-47 |
| Msa0983460 | Msa0983520 | 0.932683 | 5.889135e-95 | -8.615850e-47 |
| Msa0983460 | Msa0983530 | 0.868577 | 5.887740e-66 | -8.615850e-47 |
| Msa0983460 | Msa0983540 | 0.886594 | 2.985587e-72 | -8.615850e-47 |
| Msa0983460 | Msa0983550 | 0.813860 | 2.066681e-51 | -8.615850e-47 |
| Msa0983460 | Msa1228620 | 0.871951 | 4.619488e-67 | -8.615850e-47 |
| Msa0983460 | Msa1391960 | 0.843017 | 1.815036e-58 | -8.615850e-47 |
| Msa0983460 | Msa1391970 | 0.863980 | 1.689443e-64 | -8.615850e-47 |
| Msa0983460 | Msa1392010 | 0.864273 | 1.369164e-64 | -8.615850e-47 |
| Msa0983460 | Msa1392030 | 0.935010 | 1.660215e-96 | -8.615850e-47 |
| Msa0983460 | Msa1392110 | 0.805054 | 1.606183e-49 | -8.615850e-47 |
| Msa0983460 | Msa1392120 | 0.996340 | 2.702731e-226 | -8.615850e-47 |
| Msa0983460 | Msa1392160 | 0.900100 | 1.026517e-77 | -8.615850e-47 |
| Msa0983460 | Msa1436930 | 0.886515 | 3.197395e-72 | -8.615850e-47 |
| Msa0983460 | Msa1453860 | 0.825718 | 4.023566e-54 | -8.615850e-47 |
| Msa0595640 | Msa0983460 | 0.815721 | 7.997434e-52 | -8.615850e-47 |
| Msa0902770 | Msa0983460 | 0.820724 | 5.896844e-53 | -8.615850e-47 |
| Msa0908820 | Msa0983460 | 0.823608 | 1.263721e-53 | -8.615850e-47 |
| Msa0908830 | Msa0983460 | 0.905326 | 4.830187e-80 | -8.615850e-47 |
| Msa0908840 | Msa0983460 | 0.876870 | 9.901974e-69 | -8.615850e-47 |
| Msa0908850 | Msa0983460 | 0.944071 | 3.814948e-103 | -8.615850e-47 |
| Msa0908870 | Msa0983460 | 0.900270 | 8.663845e-78 | -8.615850e-47 |
| Msa0908920 | Msa0983460 | 0.869402 | 3.181226e-66 | -8.615850e-47 |
| Msa0908930 | Msa0983460 | 0.892581 | 1.390792e-74 | -8.615850e-47 |
| Msa0919990 | Msa0983460 | 0.848962 | 4.385442e-60 | -8.615850e-47 |
| Msa0920020 | Msa0983460 | 0.816610 | 5.060407e-52 | -8.615850e-47 |
| Msa0920060 | Msa0983460 | 0.906727 | 1.088929e-80 | -8.615850e-47 |
| Msa0944900 | Msa0983460 | 0.898024 | 7.953014e-77 | -8.615850e-47 |
| Msa0944920 | Msa0983460 | 0.931018 | 7.009404e-94 | -8.615850e-47 |
| Msa0944930 | Msa0983460 | 0.871391 | 7.084648e-67 | -8.615850e-47 |
| Msa0944940 | Msa0983460 | 0.892770 | 1.167759e-74 | -8.615850e-47 |
| Msa0944950 | Msa0983460 | 0.802446 | 5.589860e-49 | -8.615850e-47 |
| Msa0944990 | Msa0983460 | 0.876120 | 1.796872e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983460 | MtrunA17_MTg0490471 | 91.529 | 484 | 2 | 5 | 1 | 445 | 1 | 484 | 0.0 | 860 |
| Msa0983460 | MtrunA17_MTg0490461 | 99.590 | 244 | 1 | 0 | 458 | 701 | 113 | 356 | 5.85e-179 | 514 |
| Msa0983460 | MtrunA17_Chr4g0015651 | 54.886 | 481 | 166 | 7 | 4 | 442 | 3 | 474 | 3.04e-166 | 487 |
| Msa0983460 | MtrunA17_Chr4g0016741 | 54.886 | 481 | 166 | 7 | 4 | 442 | 3 | 474 | 3.04e-166 | 487 |
| Msa0983460 | MtrunA17_CPg0492941 | 54.886 | 481 | 166 | 7 | 4 | 442 | 3 | 474 | 3.04e-166 | 487 |
| Msa0983460 | MtrunA17_Chr2g0278821 | 53.462 | 260 | 87 | 4 | 220 | 445 | 2 | 261 | 1.17e-80 | 258 |
| Msa0983460 | MtrunA17_Chr2g0286451 | 52.128 | 188 | 73 | 3 | 81 | 260 | 11 | 189 | 6.84e-53 | 181 |
| Msa0983460 | MtrunA17_Chr5g0413061 | 84.286 | 70 | 10 | 1 | 209 | 277 | 15 | 84 | 6.71e-32 | 119 |
| Msa0983460 | MtrunA17_Chr4g0040631 | 48.760 | 121 | 59 | 1 | 4 | 121 | 3 | 123 | 1.06e-28 | 112 |
| Msa0983460 | MtrunA17_MTg0491021 | 95.455 | 44 | 2 | 0 | 446 | 489 | 62 | 105 | 1.57e-22 | 93.2 |
| Msa0983460 | MtrunA17_Chr4g0061471 | 59.211 | 76 | 26 | 2 | 96 | 168 | 1 | 74 | 2.43e-20 | 85.9 |
| Msa0983460 | MtrunA17_Chr3g0090971 | 27.632 | 304 | 188 | 6 | 65 | 342 | 69 | 366 | 3.46e-20 | 94.4 |
| Msa0983460 | MtrunA17_Chr4g0016371 | 27.632 | 304 | 188 | 6 | 65 | 342 | 30 | 327 | 3.64e-20 | 94.0 |
| Msa0983460 | MtrunA17_CPg0493401 | 27.632 | 304 | 188 | 6 | 65 | 342 | 69 | 366 | 3.74e-20 | 94.4 |
| Msa0983460 | MtrunA17_Chr7g0229391 | 27.393 | 303 | 190 | 5 | 65 | 342 | 69 | 366 | 1.37e-19 | 92.8 |
| Msa0983460 | MtrunA17_Chr7g0276011 | 29.870 | 231 | 142 | 5 | 65 | 281 | 69 | 293 | 8.54e-18 | 85.1 |
| Msa0983460 | MtrunA17_Chr1g0208751 | 26.349 | 315 | 203 | 5 | 61 | 350 | 124 | 434 | 2.15e-17 | 86.3 |
| Msa0983460 | MtrunA17_Chr1g0208761 | 26.990 | 289 | 182 | 5 | 87 | 350 | 153 | 437 | 3.41e-16 | 82.4 |
| Msa0983460 | MtrunA17_Chr6g0470741 | 29.577 | 213 | 130 | 5 | 65 | 263 | 69 | 275 | 1.68e-15 | 77.4 |
| Msa0983460 | MtrunA17_Chr7g0250051 | 25.526 | 333 | 217 | 8 | 60 | 361 | 57 | 389 | 1.20e-13 | 73.9 |
| Msa0983460 | MtrunA17_Chr7g0222041 | 29.386 | 228 | 127 | 7 | 65 | 281 | 69 | 273 | 1.90e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983460 | ATMG01190.1 | 83.884 | 484 | 39 | 5 | 1 | 445 | 1 | 484 | 0.0 | 799 |
| Msa0983460 | AT2G07698.1 | 84.342 | 479 | 36 | 5 | 6 | 445 | 276 | 754 | 0.0 | 795 |
| Msa0983460 | ATCG00120.1 | 54.886 | 481 | 166 | 7 | 4 | 442 | 3 | 474 | 2.36e-167 | 490 |
| Msa0983460 | ATMG00160.1 | 92.276 | 246 | 16 | 1 | 456 | 701 | 13 | 255 | 1.63e-163 | 471 |
| Msa0983460 | AT2G07695.1 | 81.522 | 92 | 14 | 1 | 456 | 547 | 13 | 101 | 8.18e-42 | 154 |
| Msa0983460 | ATMG01280.1 | 81.522 | 92 | 14 | 1 | 456 | 547 | 13 | 101 | 9.12e-42 | 154 |
| Msa0983460 | AT5G08670.1 | 28.767 | 292 | 179 | 6 | 84 | 350 | 147 | 434 | 2.73e-19 | 92.4 |
| Msa0983460 | AT5G08690.1 | 28.767 | 292 | 179 | 6 | 84 | 350 | 147 | 434 | 2.88e-19 | 92.4 |
| Msa0983460 | AT5G08680.1 | 28.767 | 292 | 179 | 6 | 84 | 350 | 150 | 437 | 4.22e-19 | 92.0 |
| Msa0983460 | ATCG00480.1 | 27.303 | 304 | 189 | 6 | 65 | 342 | 69 | 366 | 5.73e-19 | 91.3 |
| Msa0983460 | AT4G38510.1 | 25.526 | 333 | 217 | 8 | 60 | 361 | 57 | 389 | 1.70e-13 | 73.9 |
| Msa0983460 | AT4G38510.3 | 25.526 | 333 | 217 | 8 | 60 | 361 | 57 | 389 | 1.70e-13 | 73.9 |
| Msa0983460 | AT4G38510.4 | 25.526 | 333 | 217 | 8 | 60 | 361 | 57 | 389 | 1.70e-13 | 73.9 |
| Msa0983460 | AT4G38510.2 | 25.526 | 333 | 217 | 8 | 60 | 361 | 57 | 389 | 1.70e-13 | 73.9 |
| Msa0983460 | AT4G38510.5 | 25.526 | 333 | 217 | 8 | 60 | 361 | 64 | 396 | 1.98e-13 | 73.9 |
Find 171 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCCTGATTCTGATTT+TGG | 0.050672 | 6_4:+26561089 | Msa0983460:CDS |
| CAATTTCTGGCCCCATATTC+TGG | 0.061918 | 6_4:+26559893 | Msa0983460:CDS |
| TCCTGCACCTCTGCAATTTC+TGG | 0.152322 | 6_4:+26559880 | Msa0983460:CDS |
| CCCATGGCACACCCAGAATA+TGG | 0.195151 | 6_4:-26559905 | None:intergenic |
| TTTAGTGATTCTAGTAATTC+TGG | 0.215504 | 6_4:-26560586 | None:intergenic |
| GATGGGATTGCACGTGTTTA+TGG | 0.234419 | 6_4:+26559269 | Msa0983460:CDS |
| CCCTTGAGTTCATTTGCTTT+TGG | 0.244582 | 6_4:-26559718 | None:intergenic |
| GTGGCCGCCTTTGCTCAATT+TGG | 0.271705 | 6_4:+26560364 | Msa0983460:intron |
| TGTTTATGGGATTAATTGAT+TGG | 0.298274 | 6_4:-26561709 | None:intergenic |
| AATAATACGTAGATGAGTTT+TGG | 0.300483 | 6_4:-26561475 | None:intergenic |
| TTTAAATCAGATCTCTATTT+CGG | 0.303928 | 6_4:+26561572 | Msa0983460:CDS |
| CCATATTCTGGGTGTGCCAT+GGG | 0.327234 | 6_4:+26559905 | Msa0983460:CDS |
| GCAGCGGACCCATTGCAATT+AGG | 0.327415 | 6_4:+26561006 | Msa0983460:CDS |
| CCCATATTCTGGGTGTGCCA+TGG | 0.331751 | 6_4:+26559904 | Msa0983460:CDS |
| GGGGAATATTTCCGCGATAA+TGG | 0.339552 | 6_4:+26559926 | Msa0983460:CDS |
| TCTATTATTCCTTGCATCAT+AGG | 0.344940 | 6_4:-26561048 | None:intergenic |
| TCCGGAAGATGATCTAGAAT+TGG | 0.360487 | 6_4:+26561407 | Msa0983460:CDS |
| CCATGGCACACCCAGAATAT+GGG | 0.370518 | 6_4:-26559904 | None:intergenic |
| AATTTCTGGCCCCATATTCT+GGG | 0.380818 | 6_4:+26559894 | Msa0983460:CDS |
| TCAAGCTACCTGCGCCTGTC+TGG | 0.382377 | 6_4:-26560108 | None:intergenic |
| CGAGATTCAAGCTGGGGAAT+TGG | 0.382867 | 6_4:+26559298 | Msa0983460:CDS |
| TTCCATGAACAATTCTTTGC+GGG | 0.386517 | 6_4:-26561173 | None:intergenic |
| CGGGATGATACTAGGAAATA+TGG | 0.387254 | 6_4:-26561217 | None:intergenic |
| GTGCACGAGCCTATGCAAAC+TGG | 0.391059 | 6_4:+26559587 | Msa0983460:intron |
| GAACAATTCTTTGCGGGATT+GGG | 0.393928 | 6_4:-26561167 | None:intergenic |
| CCCAATTCTAGATCATCTTC+CGG | 0.395327 | 6_4:-26561408 | None:intergenic |
| GGATCTTGGTTCGCGCTTTG+TGG | 0.396131 | 6_4:+26561124 | Msa0983460:CDS |
| TGAACAATTCTTTGCGGGAT+TGG | 0.397686 | 6_4:-26561168 | None:intergenic |
| GATAACATTGGTGGGAATAT+AGG | 0.397886 | 6_4:-26560173 | None:intergenic |
| GAATTACTAGAATCACTAAA+AGG | 0.404562 | 6_4:+26560589 | Msa0983460:CDS |
| AGTTGGGCTGTACCTTCCTT+AGG | 0.404609 | 6_4:+26561522 | Msa0983460:CDS |
| CACCAATGTTATCTCCATTA+CGG | 0.408104 | 6_4:+26560183 | Msa0983460:CDS |
| GCCATGACTATCAAAGCTAT+TGG | 0.410349 | 6_4:+26561303 | Msa0983460:CDS |
| GCTGTTCCTAGTAAAGATTA+TGG | 0.411367 | 6_4:+26561675 | Msa0983460:CDS |
| CTATGATGATCTTAGTAAAC+AGG | 0.411680 | 6_4:+26559967 | Msa0983460:CDS |
| GGGCGTGTGGTCGACGCGTT+GGG | 0.411770 | 6_4:+26559476 | Msa0983460:CDS |
| GTAATTTATGCAGCTGTCAA+TGG | 0.412324 | 6_4:+26560496 | Msa0983460:CDS |
| CTGCTGATGTACCTCATAGT+TGG | 0.413257 | 6_4:+26561505 | Msa0983460:CDS |
| TGCTGATGTACCTCATAGTT+GGG | 0.413593 | 6_4:+26561506 | Msa0983460:CDS |
| AATGTCGGAATTGTTGTCTT+TGG | 0.413766 | 6_4:+26559371 | Msa0983460:CDS |
| CAAAGAGAAGGGGTTTACTA+TGG | 0.417988 | 6_4:+26561597 | Msa0983460:CDS |
| ATCCCGCAAAGAATTGTTCA+TGG | 0.420194 | 6_4:+26561171 | Msa0983460:CDS |
| CGAAAACCAAAATCAGAATC+AGG | 0.420486 | 6_4:-26561095 | None:intergenic |
| ATAATCGGGGACCGACAAAC+TGG | 0.423851 | 6_4:+26559662 | Msa0983460:CDS |
| TACGGATGGACAAATCTGTT+TGG | 0.423969 | 6_4:+26560201 | Msa0983460:CDS |
| CTAGTAAAGATTATGGTTCT+CGG | 0.426048 | 6_4:+26561682 | Msa0983460:CDS |
| AGACCTTGATGCTGCGACTC+AGG | 0.431634 | 6_4:+26560390 | Msa0983460:CDS |
| AAGATCTCCTTCTTTGATAG+AGG | 0.436009 | 6_4:-26559402 | None:intergenic |
| AGAGCCCCTCTTCCATCAAT+AGG | 0.437583 | 6_4:-26559503 | None:intergenic |
| CGAGAACCATAATCTTTACT+AGG | 0.438479 | 6_4:-26561681 | None:intergenic |
| TCTCGTTGACCACGGCCTAT+AGG | 0.440614 | 6_4:-26559635 | None:intergenic |
| GGTCAACGAGAACTTATAAT+CGG | 0.444049 | 6_4:+26559647 | Msa0983460:CDS |
| GCCAGAAATTGCAGAGGTGC+AGG | 0.454425 | 6_4:-26559881 | None:intergenic |
| GGCTTATCTGTCAGTCGCGT+CGG | 0.459939 | 6_4:+26560268 | Msa0983460:CDS |
| AGGGCGTGTGGTCGACGCGT+TGG | 0.460440 | 6_4:+26559475 | Msa0983460:CDS |
| GAACTACTATCGAGATTCTT+CGG | 0.467962 | 6_4:+26561193 | Msa0983460:CDS |
| CGAGTGGTCTCAGTTGGAGA+TGG | 0.468808 | 6_4:+26559251 | Msa0983460:CDS |
| TTGAAAATTAGTGTAAAAGT+TGG | 0.471774 | 6_4:-26559213 | None:intergenic |
| GTAGATAGCCTGGTTCCTAT+AGG | 0.472084 | 6_4:+26559620 | Msa0983460:CDS |
| CCGGAAGATGATCTAGAATT+GGG | 0.475472 | 6_4:+26561408 | Msa0983460:CDS |
| GGAGATCTTGTCAAACGTAC+TGG | 0.476032 | 6_4:+26559416 | Msa0983460:CDS |
| GATTTACGTTCTATAATCCC+TGG | 0.478978 | 6_4:-26559563 | None:intergenic |
| GCTTATCTGTCAGTCGCGTC+GGG | 0.479207 | 6_4:+26560269 | Msa0983460:CDS |
| CCAGCTTGTGTTTCAATGAC+GGG | 0.480508 | 6_4:-26560139 | None:intergenic |
| ATGAACATCGGGATGATACT+AGG | 0.484603 | 6_4:-26561225 | None:intergenic |
| TCCAGCTTGTGTTTCAATGA+CGG | 0.487192 | 6_4:-26560140 | None:intergenic |
| ATGGTATAGCAATGAACATC+GGG | 0.488097 | 6_4:-26561236 | None:intergenic |
| TCTTGTAGCAGCCACCGCTT+CGG | 0.488213 | 6_4:+26559856 | Msa0983460:CDS |
| TTGTGTTTCAATGACGGGTA+AGG | 0.488761 | 6_4:-26560134 | None:intergenic |
| GGATTGAACGAGATTCAAGC+TGG | 0.489746 | 6_4:+26559290 | Msa0983460:CDS |
| TCAATCACGTTTATTAGAAG+TGG | 0.492409 | 6_4:+26561431 | Msa0983460:CDS |
| CGCTGCATCAGAAAGAGCGC+AGG | 0.493505 | 6_4:-26560989 | None:intergenic |
| TAGTAAAGATTATGGTTCTC+GGG | 0.493958 | 6_4:+26561683 | Msa0983460:CDS |
| AAGCCTCACGGCCTGGTGGT+CGG | 0.497211 | 6_4:-26560024 | None:intergenic |
| TGTGGATGTTCCTGCGGGAA+AGG | 0.497811 | 6_4:+26559445 | Msa0983460:CDS |
| AGCGGTGGCTGCTACAAGAA+TGG | 0.504417 | 6_4:-26559852 | None:intergenic |
| ACAGATTTGTCCATCCGTAA+TGG | 0.506456 | 6_4:-26560197 | None:intergenic |
| CTATTTCGGTACAAAGAGAA+GGG | 0.508717 | 6_4:+26561586 | Msa0983460:CDS |
| ATTTACGTTCTATAATCCCT+GGG | 0.509577 | 6_4:-26559562 | None:intergenic |
| GTCAACGAGAACTTATAATC+GGG | 0.512074 | 6_4:+26559648 | Msa0983460:CDS |
| GCGTTGGGAGTACCTATTGA+TGG | 0.515529 | 6_4:+26559491 | Msa0983460:CDS |
| CTTGAAATCCTAATTGCAAT+GGG | 0.517735 | 6_4:-26561014 | None:intergenic |
| TTCTACGACGATAGGCGTAA+AGG | 0.527111 | 6_4:-26561652 | None:intergenic |
| TCTTGAAATCCTAATTGCAA+TGG | 0.528865 | 6_4:-26561015 | None:intergenic |
| CATATTCTGGGTGTGCCATG+GGG | 0.529967 | 6_4:+26559906 | Msa0983460:CDS |
| GAAGAAGATCAATCGGAAGA+AGG | 0.531791 | 6_4:-26560960 | None:intergenic |
| ATCGGTCGAGTGGTCTCAGT+TGG | 0.534793 | 6_4:+26559245 | Msa0983460:CDS |
| ATTAGAAGTGGACAATAGAG+TGG | 0.539665 | 6_4:+26561443 | Msa0983460:CDS |
| GTTCCATGAACAATTCTTTG+CGG | 0.539803 | 6_4:-26561174 | None:intergenic |
| TCTTAGAAAGAGCCGCAAAA+CGG | 0.540139 | 6_4:+26560080 | Msa0983460:intron |
| ACCAAAAGCAAATGAACTCA+AGG | 0.542636 | 6_4:+26559717 | Msa0983460:CDS |
| GAGTGGTCTCAGTTGGAGAT+GGG | 0.543938 | 6_4:+26559252 | Msa0983460:CDS |
| GGAGTACCTATTGATGGAAG+AGG | 0.544750 | 6_4:+26559497 | Msa0983460:CDS |
| GGGAATTGAAGAAGATCAAT+CGG | 0.546003 | 6_4:-26560967 | None:intergenic |
| ATCTATTGTGGATGTTCCTG+CGG | 0.547825 | 6_4:+26559439 | Msa0983460:CDS |
| CGTGTCGAAGTGAAAGCCCC+AGG | 0.547908 | 6_4:+26559545 | Msa0983460:CDS |
| GGTCAGTGCAGTGAGATTTG+TGG | 0.548043 | 6_4:+26561618 | Msa0983460:CDS |
| ATAGCTTTGATAGTCATGGC+TGG | 0.551428 | 6_4:-26561300 | None:intergenic |
| TGCACGAGCCTATGCAAACT+GGG | 0.551583 | 6_4:+26559588 | Msa0983460:CDS |
| ACTCAGGCATTACTCAATAG+AGG | 0.553172 | 6_4:+26560406 | Msa0983460:CDS |
| GAGTACCTATTGATGGAAGA+GGG | 0.553330 | 6_4:+26559498 | Msa0983460:CDS |
| TCAAAGCTATTGGACATCAA+TGG | 0.553956 | 6_4:+26561313 | Msa0983460:CDS |
| CTATTGGACATCAATGGTAT+CGG | 0.556264 | 6_4:+26561319 | Msa0983460:CDS |
| GTTAAAAGCGGTAGATAGCC+TGG | 0.557455 | 6_4:+26559610 | Msa0983460:CDS |
| CGGTCTGACCAGACAGGCGC+AGG | 0.559911 | 6_4:+26560100 | Msa0983460:CDS |
| AGTGATACCTCTATCAAAGA+AGG | 0.560302 | 6_4:+26559395 | Msa0983460:CDS |
| TCCAATAGCTTTGATAGTCA+TGG | 0.560390 | 6_4:-26561304 | None:intergenic |
| AGCATCACATTTGACACCTA+AGG | 0.561096 | 6_4:-26561538 | None:intergenic |
| TCTATTTCGGTACAAAGAGA+AGG | 0.564096 | 6_4:+26561585 | Msa0983460:CDS |
| CTGCGCTCTTTCTGATGCAG+CGG | 0.564690 | 6_4:+26560990 | Msa0983460:CDS |
| TGATCTTAGTAAACAGGCCG+TGG | 0.570285 | 6_4:+26559973 | Msa0983460:CDS |
| ATTGGAAGTGGTGCATATTG+TGG | 0.571463 | 6_4:-26560457 | None:intergenic |
| AACACAAGCTGGAGACGTAT+CGG | 0.571609 | 6_4:+26560150 | Msa0983460:CDS |
| CATGGCACACCCAGAATATG+GGG | 0.573228 | 6_4:-26559903 | None:intergenic |
| CGTAATGGAGATAACATTGG+TGG | 0.573862 | 6_4:-26560182 | None:intergenic |
| AAAGGCTATGCTAGGGCGTG+TGG | 0.574440 | 6_4:+26559463 | Msa0983460:CDS |
| AGGTGCAGGATCCGAAGCGG+TGG | 0.577100 | 6_4:-26559867 | None:intergenic |
| GCAAAACGGTCTGACCAGAC+AGG | 0.577874 | 6_4:+26560094 | Msa0983460:CDS |
| CAAACGTACTGGATCTATTG+TGG | 0.579577 | 6_4:+26559427 | Msa0983460:CDS |
| CCCGTCATTGAAACACAAGC+TGG | 0.581604 | 6_4:+26560139 | Msa0983460:CDS |
| GAGTATAAAAGAGCAAATGA+TGG | 0.584023 | 6_4:-26561255 | None:intergenic |
| AAAAGTGAGTGACTGTTCAT+CGG | 0.585460 | 6_4:-26561370 | None:intergenic |
| CCTAGCATAGCCTTTCCCGC+AGG | 0.586550 | 6_4:-26559455 | None:intergenic |
| GTCTGAGCCAAATTGAGCAA+AGG | 0.587947 | 6_4:-26560371 | None:intergenic |
| ATGCCTGAGTCGCAGCATCA+AGG | 0.595685 | 6_4:-26560393 | None:intergenic |
| TTATTGTTACGCCGACCACC+AGG | 0.596017 | 6_4:+26560013 | Msa0983460:CDS |
| GTCAAATGTGATGCTGTACC+TGG | 0.596238 | 6_4:+26561546 | Msa0983460:CDS |
| GATAAGCCGACGTTAATAGC+AGG | 0.596397 | 6_4:-26560253 | None:intergenic |
| TTATAAGTTCTCGTTGACCA+CGG | 0.596566 | 6_4:-26559643 | None:intergenic |
| AATCTTGAGAATGAGAATGT+CGG | 0.606152 | 6_4:+26559356 | Msa0983460:CDS |
| GAAGGTACAGCCCAACTATG+AGG | 0.606497 | 6_4:-26561516 | None:intergenic |
| AATGTTATCTCCATTACGGA+TGG | 0.606764 | 6_4:+26560187 | Msa0983460:CDS |
| GATTGAACGAGATTCAAGCT+GGG | 0.609055 | 6_4:+26559291 | Msa0983460:CDS |
| GCTGCATCAGAAAGAGCGCA+GGG | 0.609815 | 6_4:-26560988 | None:intergenic |
| GAGATCTGATTTAAACGACC+AGG | 0.611703 | 6_4:-26561564 | None:intergenic |
| GGAACAGCTTCTACGACGAT+AGG | 0.612524 | 6_4:-26561660 | None:intergenic |
| CCAAAAGCAAATGAACTCAA+GGG | 0.617919 | 6_4:+26559718 | Msa0983460:CDS |
| GGGAAAGCCTCACGGCCTGG+TGG | 0.618379 | 6_4:-26560028 | None:intergenic |
| TATTTCGGTACAAAGAGAAG+GGG | 0.623525 | 6_4:+26561587 | Msa0983460:CDS |
| CTGCGGGAAAGGCTATGCTA+GGG | 0.624165 | 6_4:+26559456 | Msa0983460:CDS |
| ATATTCTGGGTGTGCCATGG+GGG | 0.625634 | 6_4:+26559907 | Msa0983460:CDS |
| TCTATTGTGGATGTTCCTGC+GGG | 0.626777 | 6_4:+26559440 | Msa0983460:CDS |
| TGTTTCAATGACGGGTAAGG+CGG | 0.628911 | 6_4:-26560131 | None:intergenic |
| GATGGTATAGCAATGAACAT+CGG | 0.634381 | 6_4:-26561237 | None:intergenic |
| TGACATTTGTCGATATGCCA+CGG | 0.634400 | 6_4:-26559990 | None:intergenic |
| ATCCGTAATGGAGATAACAT+TGG | 0.638071 | 6_4:-26560185 | None:intergenic |
| CATTACTCAATAGAGGTGCA+AGG | 0.648260 | 6_4:+26560413 | Msa0983460:CDS |
| AGTGGATGAGATCGGTCGAG+TGG | 0.651008 | 6_4:+26559235 | Msa0983460:CDS |
| ATTAGACCTGCTATTAACGT+CGG | 0.655163 | 6_4:+26560247 | Msa0983460:CDS |
| GCAGCAACACCTATGATGCA+AGG | 0.656346 | 6_4:+26561039 | Msa0983460:CDS |
| TGAGCCAAATTGAGCAAAGG+CGG | 0.658843 | 6_4:-26560368 | None:intergenic |
| GGAATTCTCTGTAAGAGCTG+CGG | 0.660057 | 6_4:+26559160 | Msa0983460:CDS |
| TTTACGTTCTATAATCCCTG+GGG | 0.660540 | 6_4:-26559561 | None:intergenic |
| CAATGTCTCACTCTCAGAGG+TGG | 0.660553 | 6_4:-26559741 | None:intergenic |
| ATGCGTGCATTCCATTATCG+CGG | 0.661454 | 6_4:-26559937 | None:intergenic |
| GTAATGGAGATAACATTGGT+GGG | 0.662505 | 6_4:-26560181 | None:intergenic |
| TTTCATAGCTTTCAACTGAG+CGG | 0.668008 | 6_4:-26560296 | None:intergenic |
| CAGAGGTGCAGGATCCGAAG+CGG | 0.668942 | 6_4:-26559870 | None:intergenic |
| ATTGAACGAGATTCAAGCTG+GGG | 0.671690 | 6_4:+26559292 | Msa0983460:CDS |
| GACCACGGCCTATAGGAACC+AGG | 0.674009 | 6_4:-26559628 | None:intergenic |
| AGTACCTATTGATGGAAGAG+GGG | 0.675089 | 6_4:+26559499 | Msa0983460:CDS |
| GTGTCGAAGTGAAAGCCCCA+GGG | 0.676731 | 6_4:+26559546 | Msa0983460:CDS |
| TATGCAAACTGGGTTAAAAG+CGG | 0.679525 | 6_4:+26559598 | Msa0983460:CDS |
| ATACAATGTCTCACTCTCAG+AGG | 0.682629 | 6_4:-26559744 | None:intergenic |
| TGGACAGAAACGCTCAACTG+TGG | 0.684765 | 6_4:+26559784 | Msa0983460:intron |
| TCACATTTGACACCTAAGGA+AGG | 0.685141 | 6_4:-26561534 | None:intergenic |
| TCAACGAGAACTTATAATCG+GGG | 0.710856 | 6_4:+26559649 | Msa0983460:CDS |
| GAATTGGTTGAATTTGCCAG+CGG | 0.710976 | 6_4:+26559314 | Msa0983460:CDS |
| CTGCATCAGAAAGAGCGCAG+GGG | 0.713650 | 6_4:-26560987 | None:intergenic |
| TATGGGGCCAGAAATTGCAG+AGG | 0.719347 | 6_4:-26559887 | None:intergenic |
| AAAGCTATGAAACAAGTCTG+CGG | 0.722421 | 6_4:+26560307 | Msa0983460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTTATAAAGAAATAATA+TGG | + | chr6_4:26560870-26560889 | Msa0983460:intron | 10.0% |
| !! | TTGAAAATTAGTGTAAAAGT+TGG | - | chr6_4:26559216-26559235 | None:intergenic | 20.0% |
| !!! | ACTAGAATTTGTTTTTCAAT+TGG | - | chr6_4:26560478-26560497 | None:intergenic | 20.0% |
| !! | TTTAAATCAGATCTCTATTT+CGG | + | chr6_4:26561572-26561591 | Msa0983460:CDS | 20.0% |
| !!! | CTTTTACACTAATTTTCAAG+TGG | + | chr6_4:26559217-26559236 | Msa0983460:CDS | 25.0% |
| !!! | CATTTGCTTTTGGTTTAATA+TGG | - | chr6_4:26559711-26559730 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTTCAATTGGAAG+TGG | - | chr6_4:26560472-26560491 | None:intergenic | 25.0% |
| !! | TATTGAGCAATTTTGTCTAA+TGG | - | chr6_4:26560538-26560557 | None:intergenic | 25.0% |
| ! | TTTAGTGATTCTAGTAATTC+TGG | - | chr6_4:26560589-26560608 | None:intergenic | 25.0% |
| ! | GAATTACTAGAATCACTAAA+AGG | + | chr6_4:26560589-26560608 | Msa0983460:CDS | 25.0% |
| !!! | TTTTCTTTTAAGAATGCATC+TGG | - | chr6_4:26560643-26560662 | None:intergenic | 25.0% |
| ! | TAAGCAAAGGATAATTAGTA+GGG | - | chr6_4:26560938-26560957 | None:intergenic | 25.0% |
| !! | ATTTGCTCTTTTATACTCAA+TGG | + | chr6_4:26561260-26561279 | Msa0983460:CDS | 25.0% |
| !! | AATAATACGTAGATGAGTTT+TGG | - | chr6_4:26561478-26561497 | None:intergenic | 25.0% |
| !!! | AATTTTCAAGTGGATGAGAT+CGG | + | chr6_4:26559227-26559246 | Msa0983460:CDS | 30.0% |
| AATCTTGAGAATGAGAATGT+CGG | + | chr6_4:26559356-26559375 | Msa0983460:CDS | 30.0% | |
| ATTTACGTTCTATAATCCCT+GGG | - | chr6_4:26559565-26559584 | None:intergenic | 30.0% | |
| CTATGATGATCTTAGTAAAC+AGG | + | chr6_4:26559967-26559986 | Msa0983460:CDS | 30.0% | |
| ! | CGGTAGTTTAAAACTTGAAT+TGG | + | chr6_4:26560327-26560346 | Msa0983460:intron | 30.0% |
| TTACTAGAATCACTAAAAGG+TGG | + | chr6_4:26560592-26560611 | Msa0983460:intron | 30.0% | |
| TTGACCAACAAATTATGCAT+GGG | - | chr6_4:26560785-26560804 | None:intergenic | 30.0% | |
| ! | GAATGAATTCTATTGAGTTG+TGG | - | chr6_4:26560811-26560830 | None:intergenic | 30.0% |
| !! | GAATTCATTCTTTAAGACTC+CGG | + | chr6_4:26560821-26560840 | Msa0983460:intron | 30.0% |
| CTAAGCAAAGGATAATTAGT+AGG | - | chr6_4:26560939-26560958 | None:intergenic | 30.0% | |
| CTTGAAATCCTAATTGCAAT+GGG | - | chr6_4:26561017-26561036 | None:intergenic | 30.0% | |
| TCTTGAAATCCTAATTGCAA+TGG | - | chr6_4:26561018-26561037 | None:intergenic | 30.0% | |
| TCTATTATTCCTTGCATCAT+AGG | - | chr6_4:26561051-26561070 | None:intergenic | 30.0% | |
| ! | TTTCTTCCTGATTCTGATTT+TGG | + | chr6_4:26561089-26561108 | Msa0983460:CDS | 30.0% |
| !!! | TGATTTTGGTTTTCGTATCA+CGG | + | chr6_4:26561103-26561122 | Msa0983460:CDS | 30.0% |
| GAGTATAAAAGAGCAAATGA+TGG | - | chr6_4:26561258-26561277 | None:intergenic | 30.0% | |
| ! | TTTTGACAGTTATACGATTC+CGG | + | chr6_4:26561389-26561408 | Msa0983460:CDS | 30.0% |
| TCAATCACGTTTATTAGAAG+TGG | + | chr6_4:26561431-26561450 | Msa0983460:CDS | 30.0% | |
| CTAGTAAAGATTATGGTTCT+CGG | + | chr6_4:26561682-26561701 | Msa0983460:CDS | 30.0% | |
| TAGTAAAGATTATGGTTCTC+GGG | + | chr6_4:26561683-26561702 | Msa0983460:CDS | 30.0% | |
| AATGTCGGAATTGTTGTCTT+TGG | + | chr6_4:26559371-26559390 | Msa0983460:CDS | 35.0% | |
| AGTGATACCTCTATCAAAGA+AGG | + | chr6_4:26559395-26559414 | Msa0983460:CDS | 35.0% | |
| AAGATCTCCTTCTTTGATAG+AGG | - | chr6_4:26559405-26559424 | None:intergenic | 35.0% | |
| TTTACGTTCTATAATCCCTG+GGG | - | chr6_4:26559564-26559583 | None:intergenic | 35.0% | |
| GATTTACGTTCTATAATCCC+TGG | - | chr6_4:26559566-26559585 | None:intergenic | 35.0% | |
| TATGCAAACTGGGTTAAAAG+CGG | + | chr6_4:26559598-26559617 | Msa0983460:CDS | 35.0% | |
| TTATAAGTTCTCGTTGACCA+CGG | - | chr6_4:26559646-26559665 | None:intergenic | 35.0% | |
| GGTCAACGAGAACTTATAAT+CGG | + | chr6_4:26559647-26559666 | Msa0983460:CDS | 35.0% | |
| GTCAACGAGAACTTATAATC+GGG | + | chr6_4:26559648-26559667 | Msa0983460:CDS | 35.0% | |
| TCAACGAGAACTTATAATCG+GGG | + | chr6_4:26559649-26559668 | Msa0983460:CDS | 35.0% | |
| !!! | TAGCTGTTTTTCCAGTTTGT+CGG | - | chr6_4:26559676-26559695 | None:intergenic | 35.0% |
| ACCAAAAGCAAATGAACTCA+AGG | + | chr6_4:26559717-26559736 | Msa0983460:CDS | 35.0% | |
| CCAAAAGCAAATGAACTCAA+GGG | + | chr6_4:26559718-26559737 | Msa0983460:CDS | 35.0% | |
| TATTGTGTCTATGTAGCGAT+TGG | + | chr6_4:26559764-26559783 | Msa0983460:intron | 35.0% | |
| GTAAATAGAAAACATCGCCT+GGG | - | chr6_4:26560051-26560070 | None:intergenic | 35.0% | |
| TGTAAATAGAAAACATCGCC+TGG | - | chr6_4:26560052-26560071 | None:intergenic | 35.0% | |
| GATAACATTGGTGGGAATAT+AGG | - | chr6_4:26560176-26560195 | None:intergenic | 35.0% | |
| ! | GTAATGGAGATAACATTGGT+GGG | - | chr6_4:26560184-26560203 | None:intergenic | 35.0% |
| CACCAATGTTATCTCCATTA+CGG | + | chr6_4:26560183-26560202 | Msa0983460:CDS | 35.0% | |
| ! | ATCCGTAATGGAGATAACAT+TGG | - | chr6_4:26560188-26560207 | None:intergenic | 35.0% |
| AATGTTATCTCCATTACGGA+TGG | + | chr6_4:26560187-26560206 | Msa0983460:CDS | 35.0% | |
| ATTAGACCTGCTATTAACGT+CGG | + | chr6_4:26560247-26560266 | Msa0983460:CDS | 35.0% | |
| TTTCATAGCTTTCAACTGAG+CGG | - | chr6_4:26560299-26560318 | None:intergenic | 35.0% | |
| AAAGCTATGAAACAAGTCTG+CGG | + | chr6_4:26560307-26560326 | Msa0983460:CDS | 35.0% | |
| GTAATTTATGCAGCTGTCAA+TGG | + | chr6_4:26560496-26560515 | Msa0983460:CDS | 35.0% | |
| !! | AGAAAAAGCGCTAACGAATT+AGG | + | chr6_4:26560657-26560676 | Msa0983460:intron | 35.0% |
| ATGCAATGCACAAATTCTGA+TGG | + | chr6_4:26560684-26560703 | Msa0983460:intron | 35.0% | |
| TGCAATGCACAAATTCTGAT+GGG | + | chr6_4:26560685-26560704 | Msa0983460:intron | 35.0% | |
| AACCTTGATCCAGAAAGAAA+GGG | - | chr6_4:26560739-26560758 | None:intergenic | 35.0% | |
| TAACCTTGATCCAGAAAGAA+AGG | - | chr6_4:26560740-26560759 | None:intergenic | 35.0% | |
| ! | TTCTCCCATGCATAATTTGT+TGG | + | chr6_4:26560778-26560797 | Msa0983460:intron | 35.0% |
| GTTGACCAACAAATTATGCA+TGG | - | chr6_4:26560786-26560805 | None:intergenic | 35.0% | |
| TTATAAACAATGATTCCCCC+CGG | - | chr6_4:26560860-26560879 | None:intergenic | 35.0% | |
| GGGAATTGAAGAAGATCAAT+CGG | - | chr6_4:26560970-26560989 | None:intergenic | 35.0% | |
| CGAAAACCAAAATCAGAATC+AGG | - | chr6_4:26561098-26561117 | None:intergenic | 35.0% | |
| TTCCATGAACAATTCTTTGC+GGG | - | chr6_4:26561176-26561195 | None:intergenic | 35.0% | |
| GTTCCATGAACAATTCTTTG+CGG | - | chr6_4:26561177-26561196 | None:intergenic | 35.0% | |
| GAACTACTATCGAGATTCTT+CGG | + | chr6_4:26561193-26561212 | Msa0983460:CDS | 35.0% | |
| ATGGTATAGCAATGAACATC+GGG | - | chr6_4:26561239-26561258 | None:intergenic | 35.0% | |
| GATGGTATAGCAATGAACAT+CGG | - | chr6_4:26561240-26561259 | None:intergenic | 35.0% | |
| ! | TCTTTTATACTCAATGGACG+AGG | + | chr6_4:26561266-26561285 | Msa0983460:CDS | 35.0% |
| !! | TCCAATAGCTTTGATAGTCA+TGG | - | chr6_4:26561307-26561326 | None:intergenic | 35.0% |
| TCAAAGCTATTGGACATCAA+TGG | + | chr6_4:26561313-26561332 | Msa0983460:CDS | 35.0% | |
| CTATTGGACATCAATGGTAT+CGG | + | chr6_4:26561319-26561338 | Msa0983460:CDS | 35.0% | |
| AAAAGTGAGTGACTGTTCAT+CGG | - | chr6_4:26561373-26561392 | None:intergenic | 35.0% | |
| ATTAGAAGTGGACAATAGAG+TGG | + | chr6_4:26561443-26561462 | Msa0983460:CDS | 35.0% | |
| TCTATTTCGGTACAAAGAGA+AGG | + | chr6_4:26561585-26561604 | Msa0983460:CDS | 35.0% | |
| CTATTTCGGTACAAAGAGAA+GGG | + | chr6_4:26561586-26561605 | Msa0983460:CDS | 35.0% | |
| TATTTCGGTACAAAGAGAAG+GGG | + | chr6_4:26561587-26561606 | Msa0983460:CDS | 35.0% | |
| GCTGTTCCTAGTAAAGATTA+TGG | + | chr6_4:26561675-26561694 | Msa0983460:CDS | 35.0% | |
| CGAGAACCATAATCTTTACT+AGG | - | chr6_4:26561684-26561703 | None:intergenic | 35.0% | |
| GATTGAACGAGATTCAAGCT+GGG | + | chr6_4:26559291-26559310 | Msa0983460:CDS | 40.0% | |
| ATTGAACGAGATTCAAGCTG+GGG | + | chr6_4:26559292-26559311 | Msa0983460:CDS | 40.0% | |
| GAATTGGTTGAATTTGCCAG+CGG | + | chr6_4:26559314-26559333 | Msa0983460:CDS | 40.0% | |
| CAAACGTACTGGATCTATTG+TGG | + | chr6_4:26559427-26559446 | Msa0983460:CDS | 40.0% | |
| ATCTATTGTGGATGTTCCTG+CGG | + | chr6_4:26559439-26559458 | Msa0983460:CDS | 40.0% | |
| GAGTACCTATTGATGGAAGA+GGG | + | chr6_4:26559498-26559517 | Msa0983460:CDS | 40.0% | |
| AGTACCTATTGATGGAAGAG+GGG | + | chr6_4:26559499-26559518 | Msa0983460:CDS | 40.0% | |
| ! | GCTTTTAACCCAGTTTGCAT+AGG | - | chr6_4:26559599-26559618 | None:intergenic | 40.0% |
| ! | CCCTTGAGTTCATTTGCTTT+TGG | - | chr6_4:26559721-26559740 | None:intergenic | 40.0% |
| ATACAATGTCTCACTCTCAG+AGG | - | chr6_4:26559747-26559766 | None:intergenic | 40.0% | |
| !! | AATTTCTGGCCCCATATTCT+GGG | + | chr6_4:26559894-26559913 | Msa0983460:CDS | 40.0% |
| TGACATTTGTCGATATGCCA+CGG | - | chr6_4:26559993-26560012 | None:intergenic | 40.0% | |
| TCTTAGAAAGAGCCGCAAAA+CGG | + | chr6_4:26560080-26560099 | Msa0983460:intron | 40.0% | |
| !! | TTGTGTTTCAATGACGGGTA+AGG | - | chr6_4:26560137-26560156 | None:intergenic | 40.0% |
| TCCAGCTTGTGTTTCAATGA+CGG | - | chr6_4:26560143-26560162 | None:intergenic | 40.0% | |
| ! | CGTAATGGAGATAACATTGG+TGG | - | chr6_4:26560185-26560204 | None:intergenic | 40.0% |
| ACAGATTTGTCCATCCGTAA+TGG | - | chr6_4:26560200-26560219 | None:intergenic | 40.0% | |
| TACGGATGGACAAATCTGTT+TGG | + | chr6_4:26560201-26560220 | Msa0983460:CDS | 40.0% | |
| ! | GAAACAGAGCTCTTTTATCG+CGG | + | chr6_4:26560223-26560242 | Msa0983460:CDS | 40.0% |
| ACTCAGGCATTACTCAATAG+AGG | + | chr6_4:26560406-26560425 | Msa0983460:CDS | 40.0% | |
| ! | CATTACTCAATAGAGGTGCA+AGG | + | chr6_4:26560413-26560432 | Msa0983460:CDS | 40.0% |
| ATTGGAAGTGGTGCATATTG+TGG | - | chr6_4:26560460-26560479 | None:intergenic | 40.0% | |
| !! | TCACTAAAAGGTGGACTAAC+TGG | + | chr6_4:26560601-26560620 | Msa0983460:intron | 40.0% |
| ! | AAAGCGCTAACGAATTAGGT+AGG | + | chr6_4:26560661-26560680 | Msa0983460:intron | 40.0% |
| ACCTTGATCCAGAAAGAAAG+GGG | - | chr6_4:26560738-26560757 | None:intergenic | 40.0% | |
| CATGGGAGAAAGATTCACAA+AGG | - | chr6_4:26560768-26560787 | None:intergenic | 40.0% | |
| ! | ATACCCAAGATTTTCTTCGC+AGG | + | chr6_4:26560899-26560918 | Msa0983460:intron | 40.0% |
| CATCCTGCGAAGAAAATCTT+GGG | - | chr6_4:26560905-26560924 | None:intergenic | 40.0% | |
| GAAGAAGATCAATCGGAAGA+AGG | - | chr6_4:26560963-26560982 | None:intergenic | 40.0% | |
| GAACAATTCTTTGCGGGATT+GGG | - | chr6_4:26561170-26561189 | None:intergenic | 40.0% | |
| TGAACAATTCTTTGCGGGAT+TGG | - | chr6_4:26561171-26561190 | None:intergenic | 40.0% | |
| ATCCCGCAAAGAATTGTTCA+TGG | + | chr6_4:26561171-26561190 | Msa0983460:CDS | 40.0% | |
| CGGGATGATACTAGGAAATA+TGG | - | chr6_4:26561220-26561239 | None:intergenic | 40.0% | |
| ATGAACATCGGGATGATACT+AGG | - | chr6_4:26561228-26561247 | None:intergenic | 40.0% | |
| !! | ATAGCTTTGATAGTCATGGC+TGG | - | chr6_4:26561303-26561322 | None:intergenic | 40.0% |
| GCCATGACTATCAAAGCTAT+TGG | + | chr6_4:26561303-26561322 | Msa0983460:CDS | 40.0% | |
| ! | TCCGGAAGATGATCTAGAAT+TGG | + | chr6_4:26561407-26561426 | Msa0983460:CDS | 40.0% |
| CCCAATTCTAGATCATCTTC+CGG | - | chr6_4:26561411-26561430 | None:intergenic | 40.0% | |
| ! | CCGGAAGATGATCTAGAATT+GGG | + | chr6_4:26561408-26561427 | Msa0983460:CDS | 40.0% |
| !! | ATACGTAGATGAGTTTTGGC+TGG | - | chr6_4:26561474-26561493 | None:intergenic | 40.0% |
| TGCTGATGTACCTCATAGTT+GGG | + | chr6_4:26561506-26561525 | Msa0983460:CDS | 40.0% | |
| TCACATTTGACACCTAAGGA+AGG | - | chr6_4:26561537-26561556 | None:intergenic | 40.0% | |
| AGCATCACATTTGACACCTA+AGG | - | chr6_4:26561541-26561560 | None:intergenic | 40.0% | |
| GAGATCTGATTTAAACGACC+AGG | - | chr6_4:26561567-26561586 | None:intergenic | 40.0% | |
| CAAAGAGAAGGGGTTTACTA+TGG | + | chr6_4:26561597-26561616 | Msa0983460:CDS | 40.0% | |
| GGAATTCTCTGTAAGAGCTG+CGG | + | chr6_4:26559160-26559179 | Msa0983460:CDS | 45.0% | |
| GATGGGATTGCACGTGTTTA+TGG | + | chr6_4:26559269-26559288 | Msa0983460:CDS | 45.0% | |
| GGATTGAACGAGATTCAAGC+TGG | + | chr6_4:26559290-26559309 | Msa0983460:CDS | 45.0% | |
| GGAGATCTTGTCAAACGTAC+TGG | + | chr6_4:26559416-26559435 | Msa0983460:CDS | 45.0% | |
| TCTATTGTGGATGTTCCTGC+GGG | + | chr6_4:26559440-26559459 | Msa0983460:CDS | 45.0% | |
| ! | GGAGTACCTATTGATGGAAG+AGG | + | chr6_4:26559497-26559516 | Msa0983460:CDS | 45.0% |
| GTTAAAAGCGGTAGATAGCC+TGG | + | chr6_4:26559610-26559629 | Msa0983460:CDS | 45.0% | |
| GTAGATAGCCTGGTTCCTAT+AGG | + | chr6_4:26559620-26559639 | Msa0983460:CDS | 45.0% | |
| !! | CAATTTCTGGCCCCATATTC+TGG | + | chr6_4:26559893-26559912 | Msa0983460:CDS | 45.0% |
| GGGGAATATTTCCGCGATAA+TGG | + | chr6_4:26559926-26559945 | Msa0983460:CDS | 45.0% | |
| ATGCGTGCATTCCATTATCG+CGG | - | chr6_4:26559940-26559959 | None:intergenic | 45.0% | |
| TGATCTTAGTAAACAGGCCG+TGG | + | chr6_4:26559973-26559992 | Msa0983460:CDS | 45.0% | |
| ! | TTGCGGCTCTTTCTAAGAGA+CGG | - | chr6_4:26560078-26560097 | None:intergenic | 45.0% |
| !! | TGTTTCAATGACGGGTAAGG+CGG | - | chr6_4:26560134-26560153 | None:intergenic | 45.0% |
| CCAGCTTGTGTTTCAATGAC+GGG | - | chr6_4:26560142-26560161 | None:intergenic | 45.0% | |
| AACACAAGCTGGAGACGTAT+CGG | + | chr6_4:26560150-26560169 | Msa0983460:CDS | 45.0% | |
| GATAAGCCGACGTTAATAGC+AGG | - | chr6_4:26560256-26560275 | None:intergenic | 45.0% | |
| ATTGGCACAATATCGCGAAG+TGG | + | chr6_4:26560345-26560364 | Msa0983460:intron | 45.0% | |
| TGAGCCAAATTGAGCAAAGG+CGG | - | chr6_4:26560371-26560390 | None:intergenic | 45.0% | |
| GTCTGAGCCAAATTGAGCAA+AGG | - | chr6_4:26560374-26560393 | None:intergenic | 45.0% | |
| GCATCCTGCGAAGAAAATCT+TGG | - | chr6_4:26560906-26560925 | None:intergenic | 45.0% | |
| TCGGAAGAAGGACTAAGCAA+AGG | - | chr6_4:26560951-26560970 | None:intergenic | 45.0% | |
| ! | GGTTTTCGTATCACGGATCT+TGG | + | chr6_4:26561110-26561129 | Msa0983460:CDS | 45.0% |
| CTGCTGATGTACCTCATAGT+TGG | + | chr6_4:26561505-26561524 | Msa0983460:CDS | 45.0% | |
| GTCAAATGTGATGCTGTACC+TGG | + | chr6_4:26561546-26561565 | Msa0983460:CDS | 45.0% | |
| TTCTACGACGATAGGCGTAA+AGG | - | chr6_4:26561655-26561674 | None:intergenic | 45.0% | |
| GAGTGGTCTCAGTTGGAGAT+GGG | + | chr6_4:26559252-26559271 | Msa0983460:CDS | 50.0% | |
| CGAGATTCAAGCTGGGGAAT+TGG | + | chr6_4:26559298-26559317 | Msa0983460:CDS | 50.0% | |
| GAATTTGCCAGCGGTGTGAA+AGG | + | chr6_4:26559323-26559342 | Msa0983460:intron | 50.0% | |
| !! | GCGTTGGGAGTACCTATTGA+TGG | + | chr6_4:26559491-26559510 | Msa0983460:CDS | 50.0% |
| AGAGCCCCTCTTCCATCAAT+AGG | - | chr6_4:26559506-26559525 | None:intergenic | 50.0% | |
| TGCACGAGCCTATGCAAACT+GGG | + | chr6_4:26559588-26559607 | Msa0983460:CDS | 50.0% | |
| ATAATCGGGGACCGACAAAC+TGG | + | chr6_4:26559662-26559681 | Msa0983460:CDS | 50.0% | |
| CAATGTCTCACTCTCAGAGG+TGG | - | chr6_4:26559744-26559763 | None:intergenic | 50.0% | |
| TGGACAGAAACGCTCAACTG+TGG | + | chr6_4:26559784-26559803 | Msa0983460:intron | 50.0% | |
| TCCTGCACCTCTGCAATTTC+TGG | + | chr6_4:26559880-26559899 | Msa0983460:CDS | 50.0% | |
| TATGGGGCCAGAAATTGCAG+AGG | - | chr6_4:26559890-26559909 | None:intergenic | 50.0% | |
| CATGGCACACCCAGAATATG+GGG | - | chr6_4:26559906-26559925 | None:intergenic | 50.0% | |
| CCATGGCACACCCAGAATAT+GGG | - | chr6_4:26559907-26559926 | None:intergenic | 50.0% | |
| CCATATTCTGGGTGTGCCAT+GGG | + | chr6_4:26559905-26559924 | Msa0983460:CDS | 50.0% | |
| CATATTCTGGGTGTGCCATG+GGG | + | chr6_4:26559906-26559925 | Msa0983460:CDS | 50.0% | |
| ATATTCTGGGTGTGCCATGG+GGG | + | chr6_4:26559907-26559926 | Msa0983460:CDS | 50.0% | |
| ATCGCGGAAATATTCCCCCA+TGG | - | chr6_4:26559924-26559943 | None:intergenic | 50.0% | |
| TTATTGTTACGCCGACCACC+AGG | + | chr6_4:26560013-26560032 | Msa0983460:CDS | 50.0% | |
| ! | TGCGGCTCTTTCTAAGAGAC+GGG | - | chr6_4:26560077-26560096 | None:intergenic | 50.0% |
| ! | TGTCTGGTCAGACCGTTTTG+CGG | - | chr6_4:26560095-26560114 | None:intergenic | 50.0% |
| CCCGTCATTGAAACACAAGC+TGG | + | chr6_4:26560139-26560158 | Msa0983460:CDS | 50.0% | |
| GCCCCTTTCTTTCTGGATCA+AGG | + | chr6_4:26560734-26560753 | Msa0983460:intron | 50.0% | |
| GCAGCAACACCTATGATGCA+AGG | + | chr6_4:26561039-26561058 | Msa0983460:CDS | 50.0% | |
| ! | GAAGGTACAGCCCAACTATG+AGG | - | chr6_4:26561519-26561538 | None:intergenic | 50.0% |
| AGTTGGGCTGTACCTTCCTT+AGG | + | chr6_4:26561522-26561541 | Msa0983460:CDS | 50.0% | |
| GGTCAGTGCAGTGAGATTTG+TGG | + | chr6_4:26561618-26561637 | Msa0983460:CDS | 50.0% | |
| GGAACAGCTTCTACGACGAT+AGG | - | chr6_4:26561663-26561682 | None:intergenic | 50.0% | |
| AGTGGATGAGATCGGTCGAG+TGG | + | chr6_4:26559235-26559254 | Msa0983460:CDS | 55.0% | |
| ATCGGTCGAGTGGTCTCAGT+TGG | + | chr6_4:26559245-26559264 | Msa0983460:CDS | 55.0% | |
| CGAGTGGTCTCAGTTGGAGA+TGG | + | chr6_4:26559251-26559270 | Msa0983460:CDS | 55.0% | |
| CGCTATTCCTTTCACACCGC+TGG | - | chr6_4:26559333-26559352 | None:intergenic | 55.0% | |
| TGTGGATGTTCCTGCGGGAA+AGG | + | chr6_4:26559445-26559464 | Msa0983460:CDS | 55.0% | |
| CTGCGGGAAAGGCTATGCTA+GGG | + | chr6_4:26559456-26559475 | Msa0983460:CDS | 55.0% | |
| AAAGGCTATGCTAGGGCGTG+TGG | + | chr6_4:26559463-26559482 | Msa0983460:CDS | 55.0% | |
| GTGTCGAAGTGAAAGCCCCA+GGG | + | chr6_4:26559546-26559565 | Msa0983460:CDS | 55.0% | |
| GTGCACGAGCCTATGCAAAC+TGG | + | chr6_4:26559587-26559606 | Msa0983460:intron | 55.0% | |
| TCTCGTTGACCACGGCCTAT+AGG | - | chr6_4:26559638-26559657 | None:intergenic | 55.0% | |
| AGCGGTGGCTGCTACAAGAA+TGG | - | chr6_4:26559855-26559874 | None:intergenic | 55.0% | |
| TCTTGTAGCAGCCACCGCTT+CGG | + | chr6_4:26559856-26559875 | Msa0983460:CDS | 55.0% | |
| ! | GCCAGAAATTGCAGAGGTGC+AGG | - | chr6_4:26559884-26559903 | None:intergenic | 55.0% |
| CCCATATTCTGGGTGTGCCA+TGG | + | chr6_4:26559904-26559923 | Msa0983460:CDS | 55.0% | |
| CCCATGGCACACCCAGAATA+TGG | - | chr6_4:26559908-26559927 | None:intergenic | 55.0% | |
| GCAAAACGGTCTGACCAGAC+AGG | + | chr6_4:26560094-26560113 | Msa0983460:CDS | 55.0% | |
| GGCTTATCTGTCAGTCGCGT+CGG | + | chr6_4:26560268-26560287 | Msa0983460:CDS | 55.0% | |
| GCTTATCTGTCAGTCGCGTC+GGG | + | chr6_4:26560269-26560288 | Msa0983460:CDS | 55.0% | |
| GTGGCCGCCTTTGCTCAATT+TGG | + | chr6_4:26560364-26560383 | Msa0983460:intron | 55.0% | |
| AGACCTTGATGCTGCGACTC+AGG | + | chr6_4:26560390-26560409 | Msa0983460:CDS | 55.0% | |
| ATGCCTGAGTCGCAGCATCA+AGG | - | chr6_4:26560396-26560415 | None:intergenic | 55.0% | |
| !! | TTCATCGCATCGGGTTGGGT+TGG | - | chr6_4:26560711-26560730 | None:intergenic | 55.0% |
| AACCCAACCCGATGCGATGA+AGG | + | chr6_4:26560710-26560729 | Msa0983460:intron | 55.0% | |
| ACCCAACCCGATGCGATGAA+GGG | + | chr6_4:26560711-26560730 | Msa0983460:intron | 55.0% | |
| TGAAGGGGCCCCTTTCTTTC+TGG | + | chr6_4:26560727-26560746 | Msa0983460:intron | 55.0% | |
| CTCCGGACAGAAAGAGAGTC+CGG | + | chr6_4:26560838-26560857 | Msa0983460:intron | 55.0% | |
| TCCGGACAGAAAGAGAGTCC+GGG | + | chr6_4:26560839-26560858 | Msa0983460:intron | 55.0% | |
| ! | CTGCATCAGAAAGAGCGCAG+GGG | - | chr6_4:26560990-26561009 | None:intergenic | 55.0% |
| ! | GCTGCATCAGAAAGAGCGCA+GGG | - | chr6_4:26560991-26561010 | None:intergenic | 55.0% |
| CTGCGCTCTTTCTGATGCAG+CGG | + | chr6_4:26560990-26561009 | Msa0983460:CDS | 55.0% | |
| GCAGCGGACCCATTGCAATT+AGG | + | chr6_4:26561006-26561025 | Msa0983460:CDS | 55.0% | |
| ! | GGATCTTGGTTCGCGCTTTG+TGG | + | chr6_4:26561124-26561143 | Msa0983460:CDS | 55.0% |
| CCTAGCATAGCCTTTCCCGC+AGG | - | chr6_4:26559458-26559477 | None:intergenic | 60.0% | |
| CCTGCGGGAAAGGCTATGCT+AGG | + | chr6_4:26559455-26559474 | Msa0983460:CDS | 60.0% | |
| CGTGTCGAAGTGAAAGCCCC+AGG | + | chr6_4:26559545-26559564 | Msa0983460:CDS | 60.0% | |
| AGCCTGGTTCCTATAGGCCG+TGG | + | chr6_4:26559626-26559645 | Msa0983460:CDS | 60.0% | |
| GACCACGGCCTATAGGAACC+AGG | - | chr6_4:26559631-26559650 | None:intergenic | 60.0% | |
| ! | CAGAGGTGCAGGATCCGAAG+CGG | - | chr6_4:26559873-26559892 | None:intergenic | 60.0% |
| CATCGCCTGGGAAAGCCTCA+CGG | - | chr6_4:26560039-26560058 | None:intergenic | 60.0% | |
| TCAAGCTACCTGCGCCTGTC+TGG | - | chr6_4:26560111-26560130 | None:intergenic | 60.0% | |
| CCCCTTCATCGCATCGGGTT+GGG | - | chr6_4:26560715-26560734 | None:intergenic | 60.0% | |
| CCCAACCCGATGCGATGAAG+GGG | + | chr6_4:26560712-26560731 | Msa0983460:intron | 60.0% | |
| AAGGGGCCCCTTCATCGCAT+CGG | - | chr6_4:26560721-26560740 | None:intergenic | 60.0% | |
| CCCCGGACTCTCTTTCTGTC+CGG | - | chr6_4:26560843-26560862 | None:intergenic | 60.0% | |
| CCGGACAGAAAGAGAGTCCG+GGG | + | chr6_4:26560840-26560859 | Msa0983460:intron | 60.0% | |
| CGGACAGAAAGAGAGTCCGG+GGG | + | chr6_4:26560841-26560860 | Msa0983460:intron | 60.0% | |
| GGACAGAAAGAGAGTCCGGG+GGG | + | chr6_4:26560842-26560861 | Msa0983460:intron | 60.0% | |
| ! | CGCTGCATCAGAAAGAGCGC+AGG | - | chr6_4:26560992-26561011 | None:intergenic | 60.0% |
| AGGTGCAGGATCCGAAGCGG+TGG | - | chr6_4:26559870-26559889 | None:intergenic | 65.0% | |
| AAGCCTCACGGCCTGGTGGT+CGG | - | chr6_4:26560027-26560046 | None:intergenic | 65.0% | |
| GCCCCTTCATCGCATCGGGT+TGG | - | chr6_4:26560716-26560735 | None:intergenic | 65.0% | |
| AGGGGCCCCTTCATCGCATC+GGG | - | chr6_4:26560720-26560739 | None:intergenic | 65.0% | |
| AGGGCGTGTGGTCGACGCGT+TGG | + | chr6_4:26559475-26559494 | Msa0983460:CDS | 70.0% | |
| GGGCGTGTGGTCGACGCGTT+GGG | + | chr6_4:26559476-26559495 | Msa0983460:CDS | 70.0% | |
| GGGAAAGCCTCACGGCCTGG+TGG | - | chr6_4:26560031-26560050 | None:intergenic | 70.0% | |
| CCTGGGAAAGCCTCACGGCC+TGG | - | chr6_4:26560034-26560053 | None:intergenic | 70.0% | |
| CCAGGCCGTGAGGCTTTCCC+AGG | + | chr6_4:26560031-26560050 | Msa0983460:intron | 70.0% | |
| CGGTCTGACCAGACAGGCGC+AGG | + | chr6_4:26560100-26560119 | Msa0983460:CDS | 70.0% | |
| ACGCCGACCACCAGGCCGTG+AGG | + | chr6_4:26560021-26560040 | Msa0983460:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 26559158 | 26561728 | 26559158 | ID=Msa0983460;Name=Msa0983460 |
| chr6_4 | mRNA | 26559158 | 26561728 | 26559158 | ID=Msa0983460-mRNA-1;Parent=Msa0983460;Name=Msa0983460-mRNA-1;_AED=0.09;_eAED=0.11;_QI=0|0|0|1|0|0|7|0|701 |
| chr6_4 | exon | 26559158 | 26559335 | 26559158 | ID=Msa0983460-mRNA-1:exon:7496;Parent=Msa0983460-mRNA-1 |
| chr6_4 | exon | 26559345 | 26559578 | 26559345 | ID=Msa0983460-mRNA-1:exon:7497;Parent=Msa0983460-mRNA-1 |
| chr6_4 | exon | 26559588 | 26559775 | 26559588 | ID=Msa0983460-mRNA-1:exon:7498;Parent=Msa0983460-mRNA-1 |
| chr6_4 | exon | 26559791 | 26560037 | 26559791 | ID=Msa0983460-mRNA-1:exon:7499;Parent=Msa0983460-mRNA-1 |
| chr6_4 | exon | 26560086 | 26560328 | 26560086 | ID=Msa0983460-mRNA-1:exon:7500;Parent=Msa0983460-mRNA-1 |
| chr6_4 | exon | 26560365 | 26560610 | 26560365 | ID=Msa0983460-mRNA-1:exon:7501;Parent=Msa0983460-mRNA-1 |
| chr6_4 | exon | 26560959 | 26561728 | 26560959 | ID=Msa0983460-mRNA-1:exon:7502;Parent=Msa0983460-mRNA-1 |
| chr6_4 | CDS | 26559158 | 26559335 | 26559158 | ID=Msa0983460-mRNA-1:cds;Parent=Msa0983460-mRNA-1 |
| chr6_4 | CDS | 26559345 | 26559578 | 26559345 | ID=Msa0983460-mRNA-1:cds;Parent=Msa0983460-mRNA-1 |
| chr6_4 | CDS | 26559588 | 26559775 | 26559588 | ID=Msa0983460-mRNA-1:cds;Parent=Msa0983460-mRNA-1 |
| chr6_4 | CDS | 26559791 | 26560037 | 26559791 | ID=Msa0983460-mRNA-1:cds;Parent=Msa0983460-mRNA-1 |
| chr6_4 | CDS | 26560086 | 26560328 | 26560086 | ID=Msa0983460-mRNA-1:cds;Parent=Msa0983460-mRNA-1 |
| chr6_4 | CDS | 26560365 | 26560610 | 26560365 | ID=Msa0983460-mRNA-1:cds;Parent=Msa0983460-mRNA-1 |
| chr6_4 | CDS | 26560959 | 26561728 | 26560959 | ID=Msa0983460-mRNA-1:cds;Parent=Msa0983460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
