Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392120 | YP_009237616.1 | 91.529 | 484 | 2 | 5 | 1 | 445 | 1 | 484 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392120 | sp|P05493|ATPAM_PEA | 91.116 | 484 | 4 | 5 | 1 | 445 | 1 | 484 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392120 | A0A126TGR5 | 91.529 | 484 | 2 | 5 | 1 | 445 | 1 | 484 | 0.0 | 860 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069500 | Msa1392120 | 0.820545 | 6.480889e-53 | -8.615850e-47 |
| Msa0069510 | Msa1392120 | 0.840860 | 6.742088e-58 | -8.615850e-47 |
| Msa0069520 | Msa1392120 | 0.824281 | 8.788521e-54 | -8.615850e-47 |
| Msa1391960 | Msa1392120 | 0.831613 | 1.511481e-55 | -8.615850e-47 |
| Msa1391970 | Msa1392120 | 0.860792 | 1.613710e-63 | -8.615850e-47 |
| Msa1392010 | Msa1392120 | 0.856772 | 2.565439e-62 | -8.615850e-47 |
| Msa1392030 | Msa1392120 | 0.934933 | 1.871816e-96 | -8.615850e-47 |
| Msa1392110 | Msa1392120 | 0.802608 | 5.176244e-49 | -8.615850e-47 |
| Msa1392120 | Msa1392160 | 0.894317 | 2.762011e-75 | -8.615850e-47 |
| Msa1392120 | Msa1436930 | 0.890116 | 1.317272e-73 | -8.615850e-47 |
| Msa1392120 | Msa1453860 | 0.823387 | 1.423943e-53 | -8.615850e-47 |
| Msa0697990 | Msa1392120 | 0.925134 | 2.766896e-90 | -8.615850e-47 |
| Msa1228620 | Msa1392120 | 0.875263 | 3.535539e-68 | -8.615850e-47 |
| Msa0983130 | Msa1392120 | 0.844351 | 7.976946e-59 | -8.615850e-47 |
| Msa0983170 | Msa1392120 | 0.883329 | 4.918130e-71 | -8.615850e-47 |
| Msa0983180 | Msa1392120 | 0.868705 | 5.354963e-66 | -8.615850e-47 |
| Msa0983190 | Msa1392120 | 0.932352 | 9.687700e-95 | -8.615850e-47 |
| Msa0983210 | Msa1392120 | 0.860503 | 1.973805e-63 | -8.615850e-47 |
| Msa0983220 | Msa1392120 | 0.823640 | 1.242320e-53 | -8.615850e-47 |
| Msa0983230 | Msa1392120 | 0.859211 | 4.839859e-63 | -8.615850e-47 |
| Msa0983260 | Msa1392120 | 0.873353 | 1.569937e-67 | -8.615850e-47 |
| Msa0983300 | Msa1392120 | 0.929844 | 3.871918e-93 | -8.615850e-47 |
| Msa0983310 | Msa1392120 | 0.814065 | 1.862918e-51 | -8.615850e-47 |
| Msa0983320 | Msa1392120 | 0.860241 | 2.369975e-63 | -8.615850e-47 |
| Msa0983350 | Msa1392120 | 0.858954 | 5.777911e-63 | -8.615850e-47 |
| Msa0983360 | Msa1392120 | 0.842438 | 2.585163e-58 | -8.615850e-47 |
| Msa0983460 | Msa1392120 | 0.996340 | 2.702731e-226 | -8.615850e-47 |
| Msa0983490 | Msa1392120 | 0.831774 | 1.379855e-55 | -8.615850e-47 |
| Msa0983500 | Msa1392120 | 0.874802 | 5.081434e-68 | -8.615850e-47 |
| Msa0983520 | Msa1392120 | 0.929742 | 4.485642e-93 | -8.615850e-47 |
| Msa0983530 | Msa1392120 | 0.864174 | 1.469962e-64 | -8.615850e-47 |
| Msa0983540 | Msa1392120 | 0.887062 | 1.984178e-72 | -8.615850e-47 |
| Msa0983550 | Msa1392120 | 0.807298 | 5.413021e-50 | -8.615850e-47 |
| Msa0253200 | Msa1392120 | -0.800089 | 1.697337e-48 | -8.615850e-47 |
| Msa0292030 | Msa1392120 | -0.800161 | 1.641231e-48 | -8.615850e-47 |
| Msa0595640 | Msa1392120 | 0.810929 | 9.024709e-51 | -8.615850e-47 |
| Msa0902770 | Msa1392120 | 0.825277 | 5.117853e-54 | -8.615850e-47 |
| Msa0908820 | Msa1392120 | 0.819407 | 1.180231e-52 | -8.615850e-47 |
| Msa0908830 | Msa1392120 | 0.906652 | 1.179646e-80 | -8.615850e-47 |
| Msa0908840 | Msa1392120 | 0.871444 | 6.804404e-67 | -8.615850e-47 |
| Msa0908850 | Msa1392120 | 0.940630 | 1.678086e-100 | -8.615850e-47 |
| Msa0908870 | Msa1392120 | 0.892948 | 9.911854e-75 | -8.615850e-47 |
| Msa0908920 | Msa1392120 | 0.871619 | 5.955423e-67 | -8.615850e-47 |
| Msa0908930 | Msa1392120 | 0.886294 | 3.875103e-72 | -8.615850e-47 |
| Msa0919990 | Msa1392120 | 0.835083 | 2.062131e-56 | -8.615850e-47 |
| Msa0920020 | Msa1392120 | 0.812478 | 4.155906e-51 | -8.615850e-47 |
| Msa0920060 | Msa1392120 | 0.903915 | 2.116717e-79 | -8.615850e-47 |
| Msa0944900 | Msa1392120 | 0.889084 | 3.324111e-73 | -8.615850e-47 |
| Msa0944920 | Msa1392120 | 0.927321 | 1.384064e-91 | -8.615850e-47 |
| Msa0944930 | Msa1392120 | 0.865928 | 4.137040e-65 | -8.615850e-47 |
| Msa0944940 | Msa1392120 | 0.893270 | 7.345518e-75 | -8.615850e-47 |
| Msa0944990 | Msa1392120 | 0.868845 | 4.824134e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392120 | MtrunA17_MTg0490471 | 91.529 | 484 | 2 | 5 | 1 | 445 | 1 | 484 | 0.0 | 860 |
| Msa1392120 | MtrunA17_MTg0490461 | 99.590 | 244 | 1 | 0 | 458 | 701 | 113 | 356 | 5.85e-179 | 514 |
| Msa1392120 | MtrunA17_Chr4g0015651 | 54.886 | 481 | 166 | 7 | 4 | 442 | 3 | 474 | 3.04e-166 | 487 |
| Msa1392120 | MtrunA17_Chr4g0016741 | 54.886 | 481 | 166 | 7 | 4 | 442 | 3 | 474 | 3.04e-166 | 487 |
| Msa1392120 | MtrunA17_CPg0492941 | 54.886 | 481 | 166 | 7 | 4 | 442 | 3 | 474 | 3.04e-166 | 487 |
| Msa1392120 | MtrunA17_Chr2g0278821 | 53.462 | 260 | 87 | 4 | 220 | 445 | 2 | 261 | 1.17e-80 | 258 |
| Msa1392120 | MtrunA17_Chr2g0286451 | 52.128 | 188 | 73 | 3 | 81 | 260 | 11 | 189 | 6.84e-53 | 181 |
| Msa1392120 | MtrunA17_Chr5g0413061 | 84.286 | 70 | 10 | 1 | 209 | 277 | 15 | 84 | 6.71e-32 | 119 |
| Msa1392120 | MtrunA17_Chr4g0040631 | 48.760 | 121 | 59 | 1 | 4 | 121 | 3 | 123 | 1.06e-28 | 112 |
| Msa1392120 | MtrunA17_MTg0491021 | 95.455 | 44 | 2 | 0 | 446 | 489 | 62 | 105 | 1.57e-22 | 93.2 |
| Msa1392120 | MtrunA17_Chr4g0061471 | 59.211 | 76 | 26 | 2 | 96 | 168 | 1 | 74 | 2.43e-20 | 85.9 |
| Msa1392120 | MtrunA17_Chr3g0090971 | 27.632 | 304 | 188 | 6 | 65 | 342 | 69 | 366 | 3.46e-20 | 94.4 |
| Msa1392120 | MtrunA17_Chr4g0016371 | 27.632 | 304 | 188 | 6 | 65 | 342 | 30 | 327 | 3.64e-20 | 94.0 |
| Msa1392120 | MtrunA17_CPg0493401 | 27.632 | 304 | 188 | 6 | 65 | 342 | 69 | 366 | 3.74e-20 | 94.4 |
| Msa1392120 | MtrunA17_Chr7g0229391 | 27.393 | 303 | 190 | 5 | 65 | 342 | 69 | 366 | 1.37e-19 | 92.8 |
| Msa1392120 | MtrunA17_Chr7g0276011 | 29.870 | 231 | 142 | 5 | 65 | 281 | 69 | 293 | 8.54e-18 | 85.1 |
| Msa1392120 | MtrunA17_Chr1g0208751 | 26.349 | 315 | 203 | 5 | 61 | 350 | 124 | 434 | 2.15e-17 | 86.3 |
| Msa1392120 | MtrunA17_Chr1g0208761 | 26.990 | 289 | 182 | 5 | 87 | 350 | 153 | 437 | 3.41e-16 | 82.4 |
| Msa1392120 | MtrunA17_Chr6g0470741 | 29.577 | 213 | 130 | 5 | 65 | 263 | 69 | 275 | 1.68e-15 | 77.4 |
| Msa1392120 | MtrunA17_Chr7g0250051 | 25.526 | 333 | 217 | 8 | 60 | 361 | 57 | 389 | 1.20e-13 | 73.9 |
| Msa1392120 | MtrunA17_Chr7g0222041 | 29.386 | 228 | 127 | 7 | 65 | 281 | 69 | 273 | 1.90e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392120 | ATMG01190.1 | 83.884 | 484 | 39 | 5 | 1 | 445 | 1 | 484 | 0.0 | 799 |
| Msa1392120 | AT2G07698.1 | 84.342 | 479 | 36 | 5 | 6 | 445 | 276 | 754 | 0.0 | 795 |
| Msa1392120 | ATCG00120.1 | 54.886 | 481 | 166 | 7 | 4 | 442 | 3 | 474 | 2.36e-167 | 490 |
| Msa1392120 | ATMG00160.1 | 92.276 | 246 | 16 | 1 | 456 | 701 | 13 | 255 | 1.63e-163 | 471 |
| Msa1392120 | AT2G07695.1 | 81.522 | 92 | 14 | 1 | 456 | 547 | 13 | 101 | 8.18e-42 | 154 |
| Msa1392120 | ATMG01280.1 | 81.522 | 92 | 14 | 1 | 456 | 547 | 13 | 101 | 9.12e-42 | 154 |
| Msa1392120 | AT5G08670.1 | 28.767 | 292 | 179 | 6 | 84 | 350 | 147 | 434 | 2.73e-19 | 92.4 |
| Msa1392120 | AT5G08690.1 | 28.767 | 292 | 179 | 6 | 84 | 350 | 147 | 434 | 2.88e-19 | 92.4 |
| Msa1392120 | AT5G08680.1 | 28.767 | 292 | 179 | 6 | 84 | 350 | 150 | 437 | 4.22e-19 | 92.0 |
| Msa1392120 | ATCG00480.1 | 27.303 | 304 | 189 | 6 | 65 | 342 | 69 | 366 | 5.73e-19 | 91.3 |
| Msa1392120 | AT4G38510.1 | 25.526 | 333 | 217 | 8 | 60 | 361 | 57 | 389 | 1.70e-13 | 73.9 |
| Msa1392120 | AT4G38510.3 | 25.526 | 333 | 217 | 8 | 60 | 361 | 57 | 389 | 1.70e-13 | 73.9 |
| Msa1392120 | AT4G38510.4 | 25.526 | 333 | 217 | 8 | 60 | 361 | 57 | 389 | 1.70e-13 | 73.9 |
| Msa1392120 | AT4G38510.2 | 25.526 | 333 | 217 | 8 | 60 | 361 | 57 | 389 | 1.70e-13 | 73.9 |
| Msa1392120 | AT4G38510.5 | 25.526 | 333 | 217 | 8 | 60 | 361 | 64 | 396 | 1.98e-13 | 73.9 |
Find 171 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCCTGATTCTGATTT+TGG | 0.050672 | tig0021468:-84535 | Msa1392120:CDS |
| CAATTTCTGGCCCCATATTC+TGG | 0.061918 | tig0021468:-85731 | Msa1392120:CDS |
| TCCTGCACCTCTGCAATTTC+TGG | 0.152322 | tig0021468:-85744 | Msa1392120:CDS |
| CCCATGGCACACCCAGAATA+TGG | 0.195151 | tig0021468:+85719 | None:intergenic |
| TTTAGTGATTCTAGTAATTC+TGG | 0.215504 | tig0021468:+85038 | None:intergenic |
| GATGGGATTGCACGTGTTTA+TGG | 0.234419 | tig0021468:-86355 | Msa1392120:CDS |
| CCCTTGAGTTCATTTGCTTT+TGG | 0.244582 | tig0021468:+85906 | None:intergenic |
| GTGGCCGCCTTTGCTCAATT+TGG | 0.271705 | tig0021468:-85260 | Msa1392120:CDS |
| TGTTTATGGGATTAATTGAT+TGG | 0.298274 | tig0021468:+83915 | None:intergenic |
| AATAATACGTAGATGAGTTT+TGG | 0.300483 | tig0021468:+84149 | None:intergenic |
| TTTAAATCAGATCTCTATTT+CGG | 0.303928 | tig0021468:-84052 | Msa1392120:CDS |
| CCATATTCTGGGTGTGCCAT+GGG | 0.327234 | tig0021468:-85719 | Msa1392120:CDS |
| GCAGCGGACCCATTGCAATT+AGG | 0.327415 | tig0021468:-84618 | Msa1392120:CDS |
| CCCATATTCTGGGTGTGCCA+TGG | 0.331751 | tig0021468:-85720 | Msa1392120:CDS |
| GGGGAATATTTCCGCGATAA+TGG | 0.339552 | tig0021468:-85698 | Msa1392120:CDS |
| TCTATTATTCCTTGCATCAT+AGG | 0.344940 | tig0021468:+84576 | None:intergenic |
| TCCGGAAGATGATCTAGAAT+TGG | 0.360487 | tig0021468:-84217 | Msa1392120:CDS |
| CCATGGCACACCCAGAATAT+GGG | 0.370518 | tig0021468:+85720 | None:intergenic |
| AATTTCTGGCCCCATATTCT+GGG | 0.380818 | tig0021468:-85730 | Msa1392120:CDS |
| TCAAGCTACCTGCGCCTGTC+TGG | 0.382377 | tig0021468:+85516 | None:intergenic |
| CGAGATTCAAGCTGGGGAAT+TGG | 0.382867 | tig0021468:-86326 | Msa1392120:CDS |
| TTCCATGAACAATTCTTTGC+GGG | 0.386517 | tig0021468:+84451 | None:intergenic |
| CGGGATGATACTAGGAAATA+TGG | 0.387254 | tig0021468:+84407 | None:intergenic |
| GTGCACGAGCCTATGCAAAC+TGG | 0.391059 | tig0021468:-86037 | Msa1392120:CDS |
| GAACAATTCTTTGCGGGATT+GGG | 0.393928 | tig0021468:+84457 | None:intergenic |
| CCCAATTCTAGATCATCTTC+CGG | 0.395327 | tig0021468:+84216 | None:intergenic |
| GGATCTTGGTTCGCGCTTTG+TGG | 0.396131 | tig0021468:-84500 | Msa1392120:CDS |
| TGAACAATTCTTTGCGGGAT+TGG | 0.397686 | tig0021468:+84456 | None:intergenic |
| GATAACATTGGTGGGAATAT+AGG | 0.397886 | tig0021468:+85451 | None:intergenic |
| GAATTACTAGAATCACTAAA+AGG | 0.404562 | tig0021468:-85035 | Msa1392120:intron |
| AGTTGGGCTGTACCTTCCTT+AGG | 0.404609 | tig0021468:-84102 | Msa1392120:CDS |
| CACCAATGTTATCTCCATTA+CGG | 0.408104 | tig0021468:-85441 | Msa1392120:CDS |
| GCCATGACTATCAAAGCTAT+TGG | 0.410349 | tig0021468:-84321 | Msa1392120:CDS |
| GCTGTTCCTAGTAAAGATTA+TGG | 0.411367 | tig0021468:-83949 | Msa1392120:CDS |
| CTATGATGATCTTAGTAAAC+AGG | 0.411680 | tig0021468:-85657 | Msa1392120:CDS |
| GGGCGTGTGGTCGACGCGTT+GGG | 0.411770 | tig0021468:-86148 | Msa1392120:CDS |
| GTAATTTATGCAGCTGTCAA+TGG | 0.412324 | tig0021468:-85128 | Msa1392120:CDS |
| CTGCTGATGTACCTCATAGT+TGG | 0.413257 | tig0021468:-84119 | Msa1392120:CDS |
| TGCTGATGTACCTCATAGTT+GGG | 0.413593 | tig0021468:-84118 | Msa1392120:CDS |
| AATGTCGGAATTGTTGTCTT+TGG | 0.413766 | tig0021468:-86253 | Msa1392120:CDS |
| CAAAGAGAAGGGGTTTACTA+TGG | 0.417988 | tig0021468:-84027 | Msa1392120:CDS |
| ATCCCGCAAAGAATTGTTCA+TGG | 0.420194 | tig0021468:-84453 | Msa1392120:CDS |
| CGAAAACCAAAATCAGAATC+AGG | 0.420486 | tig0021468:+84529 | None:intergenic |
| ATAATCGGGGACCGACAAAC+TGG | 0.423851 | tig0021468:-85962 | Msa1392120:CDS |
| TACGGATGGACAAATCTGTT+TGG | 0.423969 | tig0021468:-85423 | Msa1392120:CDS |
| CTAGTAAAGATTATGGTTCT+CGG | 0.426048 | tig0021468:-83942 | Msa1392120:CDS |
| AGACCTTGATGCTGCGACTC+AGG | 0.431634 | tig0021468:-85234 | Msa1392120:CDS |
| AAGATCTCCTTCTTTGATAG+AGG | 0.436009 | tig0021468:+86222 | None:intergenic |
| AGAGCCCCTCTTCCATCAAT+AGG | 0.437583 | tig0021468:+86121 | None:intergenic |
| CGAGAACCATAATCTTTACT+AGG | 0.438479 | tig0021468:+83943 | None:intergenic |
| TCTCGTTGACCACGGCCTAT+AGG | 0.440614 | tig0021468:+85989 | None:intergenic |
| GGTCAACGAGAACTTATAAT+CGG | 0.444049 | tig0021468:-85977 | Msa1392120:CDS |
| GCCAGAAATTGCAGAGGTGC+AGG | 0.454425 | tig0021468:+85743 | None:intergenic |
| GGCTTATCTGTCAGTCGCGT+CGG | 0.459939 | tig0021468:-85356 | Msa1392120:CDS |
| AGGGCGTGTGGTCGACGCGT+TGG | 0.460440 | tig0021468:-86149 | Msa1392120:CDS |
| GAACTACTATCGAGATTCTT+CGG | 0.467962 | tig0021468:-84431 | Msa1392120:CDS |
| CGAGTGGTCTCAGTTGGAGA+TGG | 0.468808 | tig0021468:-86373 | Msa1392120:CDS |
| TTGAAAATTAGTGTAAAAGT+TGG | 0.471774 | tig0021468:+86411 | None:intergenic |
| GTAGATAGCCTGGTTCCTAT+AGG | 0.472084 | tig0021468:-86004 | Msa1392120:CDS |
| CCGGAAGATGATCTAGAATT+GGG | 0.475472 | tig0021468:-84216 | Msa1392120:CDS |
| GGAGATCTTGTCAAACGTAC+TGG | 0.476032 | tig0021468:-86208 | Msa1392120:CDS |
| GATTTACGTTCTATAATCCC+TGG | 0.478978 | tig0021468:+86061 | None:intergenic |
| GCTTATCTGTCAGTCGCGTC+GGG | 0.479207 | tig0021468:-85355 | Msa1392120:CDS |
| CCAGCTTGTGTTTCAATGAC+GGG | 0.480508 | tig0021468:+85485 | None:intergenic |
| ATGAACATCGGGATGATACT+AGG | 0.484603 | tig0021468:+84399 | None:intergenic |
| TCCAGCTTGTGTTTCAATGA+CGG | 0.487192 | tig0021468:+85484 | None:intergenic |
| ATGGTATAGCAATGAACATC+GGG | 0.488097 | tig0021468:+84388 | None:intergenic |
| TCTTGTAGCAGCCACCGCTT+CGG | 0.488213 | tig0021468:-85768 | Msa1392120:CDS |
| TTGTGTTTCAATGACGGGTA+AGG | 0.488761 | tig0021468:+85490 | None:intergenic |
| GGATTGAACGAGATTCAAGC+TGG | 0.489746 | tig0021468:-86334 | Msa1392120:CDS |
| TCAATCACGTTTATTAGAAG+TGG | 0.492409 | tig0021468:-84193 | Msa1392120:CDS |
| CGCTGCATCAGAAAGAGCGC+AGG | 0.493505 | tig0021468:+84635 | None:intergenic |
| TAGTAAAGATTATGGTTCTC+GGG | 0.493958 | tig0021468:-83941 | Msa1392120:CDS |
| AAGCCTCACGGCCTGGTGGT+CGG | 0.497211 | tig0021468:+85600 | None:intergenic |
| TGTGGATGTTCCTGCGGGAA+AGG | 0.497811 | tig0021468:-86179 | Msa1392120:CDS |
| AGCGGTGGCTGCTACAAGAA+TGG | 0.504417 | tig0021468:+85772 | None:intergenic |
| ACAGATTTGTCCATCCGTAA+TGG | 0.506456 | tig0021468:+85427 | None:intergenic |
| CTATTTCGGTACAAAGAGAA+GGG | 0.508717 | tig0021468:-84038 | Msa1392120:CDS |
| ATTTACGTTCTATAATCCCT+GGG | 0.509577 | tig0021468:+86062 | None:intergenic |
| GTCAACGAGAACTTATAATC+GGG | 0.512074 | tig0021468:-85976 | Msa1392120:CDS |
| GCGTTGGGAGTACCTATTGA+TGG | 0.515529 | tig0021468:-86133 | Msa1392120:CDS |
| CTTGAAATCCTAATTGCAAT+GGG | 0.517735 | tig0021468:+84610 | None:intergenic |
| TTCTACGACGATAGGCGTAA+AGG | 0.527111 | tig0021468:+83972 | None:intergenic |
| TCTTGAAATCCTAATTGCAA+TGG | 0.528865 | tig0021468:+84609 | None:intergenic |
| CATATTCTGGGTGTGCCATG+GGG | 0.529967 | tig0021468:-85718 | Msa1392120:CDS |
| GAAGAAGATCAATCGGAAGA+AGG | 0.531791 | tig0021468:+84664 | None:intergenic |
| ATCGGTCGAGTGGTCTCAGT+TGG | 0.534793 | tig0021468:-86379 | Msa1392120:CDS |
| ATTAGAAGTGGACAATAGAG+TGG | 0.539665 | tig0021468:-84181 | Msa1392120:CDS |
| GTTCCATGAACAATTCTTTG+CGG | 0.539803 | tig0021468:+84450 | None:intergenic |
| TCTTAGAAAGAGCCGCAAAA+CGG | 0.540139 | tig0021468:-85544 | Msa1392120:intron |
| ACCAAAAGCAAATGAACTCA+AGG | 0.542636 | tig0021468:-85907 | Msa1392120:CDS |
| GAGTGGTCTCAGTTGGAGAT+GGG | 0.543938 | tig0021468:-86372 | Msa1392120:CDS |
| GGAGTACCTATTGATGGAAG+AGG | 0.544750 | tig0021468:-86127 | Msa1392120:CDS |
| GGGAATTGAAGAAGATCAAT+CGG | 0.546003 | tig0021468:+84657 | None:intergenic |
| ATCTATTGTGGATGTTCCTG+CGG | 0.547825 | tig0021468:-86185 | Msa1392120:CDS |
| CGTGTCGAAGTGAAAGCCCC+AGG | 0.547908 | tig0021468:-86079 | Msa1392120:CDS |
| GGTCAGTGCAGTGAGATTTG+TGG | 0.548043 | tig0021468:-84006 | Msa1392120:CDS |
| ATAGCTTTGATAGTCATGGC+TGG | 0.551428 | tig0021468:+84324 | None:intergenic |
| TGCACGAGCCTATGCAAACT+GGG | 0.551583 | tig0021468:-86036 | Msa1392120:CDS |
| ACTCAGGCATTACTCAATAG+AGG | 0.553172 | tig0021468:-85218 | Msa1392120:CDS |
| GAGTACCTATTGATGGAAGA+GGG | 0.553330 | tig0021468:-86126 | Msa1392120:CDS |
| TCAAAGCTATTGGACATCAA+TGG | 0.553956 | tig0021468:-84311 | Msa1392120:CDS |
| CTATTGGACATCAATGGTAT+CGG | 0.556264 | tig0021468:-84305 | Msa1392120:CDS |
| GTTAAAAGCGGTAGATAGCC+TGG | 0.557455 | tig0021468:-86014 | Msa1392120:CDS |
| CGGTCTGACCAGACAGGCGC+AGG | 0.559911 | tig0021468:-85524 | Msa1392120:CDS |
| AGTGATACCTCTATCAAAGA+AGG | 0.560302 | tig0021468:-86229 | Msa1392120:CDS |
| TCCAATAGCTTTGATAGTCA+TGG | 0.560390 | tig0021468:+84320 | None:intergenic |
| AGCATCACATTTGACACCTA+AGG | 0.561096 | tig0021468:+84086 | None:intergenic |
| TCTATTTCGGTACAAAGAGA+AGG | 0.564096 | tig0021468:-84039 | Msa1392120:CDS |
| CTGCGCTCTTTCTGATGCAG+CGG | 0.564690 | tig0021468:-84634 | Msa1392120:CDS |
| TGATCTTAGTAAACAGGCCG+TGG | 0.570285 | tig0021468:-85651 | Msa1392120:CDS |
| ATTGGAAGTGGTGCATATTG+TGG | 0.571463 | tig0021468:+85167 | None:intergenic |
| AACACAAGCTGGAGACGTAT+CGG | 0.571609 | tig0021468:-85474 | Msa1392120:CDS |
| CATGGCACACCCAGAATATG+GGG | 0.573228 | tig0021468:+85721 | None:intergenic |
| CGTAATGGAGATAACATTGG+TGG | 0.573862 | tig0021468:+85442 | None:intergenic |
| AAAGGCTATGCTAGGGCGTG+TGG | 0.574440 | tig0021468:-86161 | Msa1392120:CDS |
| AGGTGCAGGATCCGAAGCGG+TGG | 0.577100 | tig0021468:+85757 | None:intergenic |
| GCAAAACGGTCTGACCAGAC+AGG | 0.577874 | tig0021468:-85530 | Msa1392120:CDS |
| CAAACGTACTGGATCTATTG+TGG | 0.579577 | tig0021468:-86197 | Msa1392120:CDS |
| CCCGTCATTGAAACACAAGC+TGG | 0.581604 | tig0021468:-85485 | Msa1392120:CDS |
| GAGTATAAAAGAGCAAATGA+TGG | 0.584023 | tig0021468:+84369 | None:intergenic |
| AAAAGTGAGTGACTGTTCAT+CGG | 0.585460 | tig0021468:+84254 | None:intergenic |
| CCTAGCATAGCCTTTCCCGC+AGG | 0.586550 | tig0021468:+86169 | None:intergenic |
| GTCTGAGCCAAATTGAGCAA+AGG | 0.587947 | tig0021468:+85253 | None:intergenic |
| ATGCCTGAGTCGCAGCATCA+AGG | 0.595685 | tig0021468:+85231 | None:intergenic |
| TTATTGTTACGCCGACCACC+AGG | 0.596017 | tig0021468:-85611 | Msa1392120:CDS |
| GTCAAATGTGATGCTGTACC+TGG | 0.596238 | tig0021468:-84078 | Msa1392120:CDS |
| GATAAGCCGACGTTAATAGC+AGG | 0.596397 | tig0021468:+85371 | None:intergenic |
| TTATAAGTTCTCGTTGACCA+CGG | 0.596566 | tig0021468:+85981 | None:intergenic |
| AATCTTGAGAATGAGAATGT+CGG | 0.606152 | tig0021468:-86268 | Msa1392120:CDS |
| GAAGGTACAGCCCAACTATG+AGG | 0.606497 | tig0021468:+84108 | None:intergenic |
| AATGTTATCTCCATTACGGA+TGG | 0.606764 | tig0021468:-85437 | Msa1392120:CDS |
| GATTGAACGAGATTCAAGCT+GGG | 0.609055 | tig0021468:-86333 | Msa1392120:CDS |
| GCTGCATCAGAAAGAGCGCA+GGG | 0.609815 | tig0021468:+84636 | None:intergenic |
| GAGATCTGATTTAAACGACC+AGG | 0.611703 | tig0021468:+84060 | None:intergenic |
| GGAACAGCTTCTACGACGAT+AGG | 0.612524 | tig0021468:+83964 | None:intergenic |
| CCAAAAGCAAATGAACTCAA+GGG | 0.617919 | tig0021468:-85906 | Msa1392120:CDS |
| GGGAAAGCCTCACGGCCTGG+TGG | 0.618379 | tig0021468:+85596 | None:intergenic |
| TATTTCGGTACAAAGAGAAG+GGG | 0.623525 | tig0021468:-84037 | Msa1392120:CDS |
| CTGCGGGAAAGGCTATGCTA+GGG | 0.624165 | tig0021468:-86168 | Msa1392120:CDS |
| ATATTCTGGGTGTGCCATGG+GGG | 0.625634 | tig0021468:-85717 | Msa1392120:CDS |
| TCTATTGTGGATGTTCCTGC+GGG | 0.626777 | tig0021468:-86184 | Msa1392120:CDS |
| TGTTTCAATGACGGGTAAGG+CGG | 0.628911 | tig0021468:+85493 | None:intergenic |
| GATGGTATAGCAATGAACAT+CGG | 0.634381 | tig0021468:+84387 | None:intergenic |
| TGACATTTGTCGATATGCCA+CGG | 0.634400 | tig0021468:+85634 | None:intergenic |
| ATCCGTAATGGAGATAACAT+TGG | 0.638071 | tig0021468:+85439 | None:intergenic |
| CATTACTCAATAGAGGTGCA+AGG | 0.648260 | tig0021468:-85211 | Msa1392120:CDS |
| AGTGGATGAGATCGGTCGAG+TGG | 0.651008 | tig0021468:-86389 | Msa1392120:CDS |
| ATTAGACCTGCTATTAACGT+CGG | 0.655163 | tig0021468:-85377 | Msa1392120:CDS |
| GCAGCAACACCTATGATGCA+AGG | 0.656346 | tig0021468:-84585 | Msa1392120:CDS |
| TGAGCCAAATTGAGCAAAGG+CGG | 0.658843 | tig0021468:+85256 | None:intergenic |
| GGAATTCTCTGTAAGAGCTG+CGG | 0.660057 | tig0021468:-86464 | Msa1392120:CDS |
| TTTACGTTCTATAATCCCTG+GGG | 0.660540 | tig0021468:+86063 | None:intergenic |
| CAATGTCTCACTCTCAGAGG+TGG | 0.660553 | tig0021468:+85883 | None:intergenic |
| ATGCGTGCATTCCATTATCG+CGG | 0.661454 | tig0021468:+85687 | None:intergenic |
| GTAATGGAGATAACATTGGT+GGG | 0.662505 | tig0021468:+85443 | None:intergenic |
| TTTCATAGCTTTCAACTGAG+CGG | 0.668008 | tig0021468:+85328 | None:intergenic |
| CAGAGGTGCAGGATCCGAAG+CGG | 0.668942 | tig0021468:+85754 | None:intergenic |
| ATTGAACGAGATTCAAGCTG+GGG | 0.671690 | tig0021468:-86332 | Msa1392120:CDS |
| GACCACGGCCTATAGGAACC+AGG | 0.674009 | tig0021468:+85996 | None:intergenic |
| AGTACCTATTGATGGAAGAG+GGG | 0.675089 | tig0021468:-86125 | Msa1392120:CDS |
| GTGTCGAAGTGAAAGCCCCA+GGG | 0.676731 | tig0021468:-86078 | Msa1392120:CDS |
| TATGCAAACTGGGTTAAAAG+CGG | 0.679525 | tig0021468:-86026 | Msa1392120:CDS |
| ATACAATGTCTCACTCTCAG+AGG | 0.682629 | tig0021468:+85880 | None:intergenic |
| TGGACAGAAACGCTCAACTG+TGG | 0.684765 | tig0021468:-85840 | Msa1392120:intron |
| TCACATTTGACACCTAAGGA+AGG | 0.685141 | tig0021468:+84090 | None:intergenic |
| TCAACGAGAACTTATAATCG+GGG | 0.710856 | tig0021468:-85975 | Msa1392120:CDS |
| GAATTGGTTGAATTTGCCAG+CGG | 0.710976 | tig0021468:-86310 | Msa1392120:intron |
| CTGCATCAGAAAGAGCGCAG+GGG | 0.713650 | tig0021468:+84637 | None:intergenic |
| TATGGGGCCAGAAATTGCAG+AGG | 0.719347 | tig0021468:+85737 | None:intergenic |
| AAAGCTATGAAACAAGTCTG+CGG | 0.722421 | tig0021468:-85317 | Msa1392120:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTTATAAAGAAATAATA+TGG | - | tig0021468:85630-85649 | Msa1392120:CDS | 10.0% |
| !! | TTGAAAATTAGTGTAAAAGT+TGG | + | tig0021468:83976-83995 | None:intergenic | 20.0% |
| !!! | ACTAGAATTTGTTTTTCAAT+TGG | + | tig0021468:85238-85257 | None:intergenic | 20.0% |
| !! | TTTAAATCAGATCTCTATTT+CGG | - | tig0021468:86332-86351 | Msa1392120:CDS | 20.0% |
| !!! | CTTTTACACTAATTTTCAAG+TGG | - | tig0021468:83977-83996 | Msa1392120:CDS | 25.0% |
| !!! | CATTTGCTTTTGGTTTAATA+TGG | + | tig0021468:84471-84490 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTTCAATTGGAAG+TGG | + | tig0021468:85232-85251 | None:intergenic | 25.0% |
| !! | TATTGAGCAATTTTGTCTAA+TGG | + | tig0021468:85298-85317 | None:intergenic | 25.0% |
| ! | TTTAGTGATTCTAGTAATTC+TGG | + | tig0021468:85349-85368 | None:intergenic | 25.0% |
| ! | GAATTACTAGAATCACTAAA+AGG | - | tig0021468:85349-85368 | Msa1392120:CDS | 25.0% |
| !!! | TTTTCTTTTAAGAATGCATC+TGG | + | tig0021468:85403-85422 | None:intergenic | 25.0% |
| ! | TAAGCAAAGGATAATTAGTA+GGG | + | tig0021468:85698-85717 | None:intergenic | 25.0% |
| !! | ATTTGCTCTTTTATACTCAA+TGG | - | tig0021468:86020-86039 | Msa1392120:CDS | 25.0% |
| !! | AATAATACGTAGATGAGTTT+TGG | + | tig0021468:86238-86257 | None:intergenic | 25.0% |
| !!! | AATTTTCAAGTGGATGAGAT+CGG | - | tig0021468:83987-84006 | Msa1392120:CDS | 30.0% |
| AATCTTGAGAATGAGAATGT+CGG | - | tig0021468:84116-84135 | Msa1392120:CDS | 30.0% | |
| ATTTACGTTCTATAATCCCT+GGG | + | tig0021468:84325-84344 | None:intergenic | 30.0% | |
| CTATGATGATCTTAGTAAAC+AGG | - | tig0021468:84727-84746 | Msa1392120:intron | 30.0% | |
| ! | CGGTAGTTTAAAACTTGAAT+TGG | - | tig0021468:85087-85106 | Msa1392120:CDS | 30.0% |
| TTACTAGAATCACTAAAAGG+TGG | - | tig0021468:85352-85371 | Msa1392120:CDS | 30.0% | |
| TTGACCAACAAATTATGCAT+GGG | + | tig0021468:85545-85564 | None:intergenic | 30.0% | |
| ! | GAATGAATTCTATTGAGTTG+TGG | + | tig0021468:85571-85590 | None:intergenic | 30.0% |
| !! | GAATTCATTCTTTAAGACTC+CGG | - | tig0021468:85581-85600 | Msa1392120:intron | 30.0% |
| CTAAGCAAAGGATAATTAGT+AGG | + | tig0021468:85699-85718 | None:intergenic | 30.0% | |
| CTTGAAATCCTAATTGCAAT+GGG | + | tig0021468:85777-85796 | None:intergenic | 30.0% | |
| TCTTGAAATCCTAATTGCAA+TGG | + | tig0021468:85778-85797 | None:intergenic | 30.0% | |
| TCTATTATTCCTTGCATCAT+AGG | + | tig0021468:85811-85830 | None:intergenic | 30.0% | |
| ! | TTTCTTCCTGATTCTGATTT+TGG | - | tig0021468:85849-85868 | Msa1392120:intron | 30.0% |
| !!! | TGATTTTGGTTTTCGTATCA+CGG | - | tig0021468:85863-85882 | Msa1392120:intron | 30.0% |
| GAGTATAAAAGAGCAAATGA+TGG | + | tig0021468:86018-86037 | None:intergenic | 30.0% | |
| ! | TTTTGACAGTTATACGATTC+CGG | - | tig0021468:86149-86168 | Msa1392120:CDS | 30.0% |
| TCAATCACGTTTATTAGAAG+TGG | - | tig0021468:86191-86210 | Msa1392120:CDS | 30.0% | |
| CTAGTAAAGATTATGGTTCT+CGG | - | tig0021468:86442-86461 | Msa1392120:CDS | 30.0% | |
| TAGTAAAGATTATGGTTCTC+GGG | - | tig0021468:86443-86462 | Msa1392120:CDS | 30.0% | |
| AATGTCGGAATTGTTGTCTT+TGG | - | tig0021468:84131-84150 | Msa1392120:CDS | 35.0% | |
| AGTGATACCTCTATCAAAGA+AGG | - | tig0021468:84155-84174 | Msa1392120:CDS | 35.0% | |
| AAGATCTCCTTCTTTGATAG+AGG | + | tig0021468:84165-84184 | None:intergenic | 35.0% | |
| TTTACGTTCTATAATCCCTG+GGG | + | tig0021468:84324-84343 | None:intergenic | 35.0% | |
| GATTTACGTTCTATAATCCC+TGG | + | tig0021468:84326-84345 | None:intergenic | 35.0% | |
| TATGCAAACTGGGTTAAAAG+CGG | - | tig0021468:84358-84377 | Msa1392120:CDS | 35.0% | |
| TTATAAGTTCTCGTTGACCA+CGG | + | tig0021468:84406-84425 | None:intergenic | 35.0% | |
| GGTCAACGAGAACTTATAAT+CGG | - | tig0021468:84407-84426 | Msa1392120:CDS | 35.0% | |
| GTCAACGAGAACTTATAATC+GGG | - | tig0021468:84408-84427 | Msa1392120:CDS | 35.0% | |
| TCAACGAGAACTTATAATCG+GGG | - | tig0021468:84409-84428 | Msa1392120:CDS | 35.0% | |
| !!! | TAGCTGTTTTTCCAGTTTGT+CGG | + | tig0021468:84436-84455 | None:intergenic | 35.0% |
| ACCAAAAGCAAATGAACTCA+AGG | - | tig0021468:84477-84496 | Msa1392120:CDS | 35.0% | |
| CCAAAAGCAAATGAACTCAA+GGG | - | tig0021468:84478-84497 | Msa1392120:CDS | 35.0% | |
| TATTGTGTCTATGTAGCGAT+TGG | - | tig0021468:84524-84543 | Msa1392120:CDS | 35.0% | |
| GTAAATAGAAAACATCGCCT+GGG | + | tig0021468:84811-84830 | None:intergenic | 35.0% | |
| TGTAAATAGAAAACATCGCC+TGG | + | tig0021468:84812-84831 | None:intergenic | 35.0% | |
| GATAACATTGGTGGGAATAT+AGG | + | tig0021468:84936-84955 | None:intergenic | 35.0% | |
| ! | GTAATGGAGATAACATTGGT+GGG | + | tig0021468:84944-84963 | None:intergenic | 35.0% |
| CACCAATGTTATCTCCATTA+CGG | - | tig0021468:84943-84962 | Msa1392120:intron | 35.0% | |
| ! | ATCCGTAATGGAGATAACAT+TGG | + | tig0021468:84948-84967 | None:intergenic | 35.0% |
| AATGTTATCTCCATTACGGA+TGG | - | tig0021468:84947-84966 | Msa1392120:intron | 35.0% | |
| ATTAGACCTGCTATTAACGT+CGG | - | tig0021468:85007-85026 | Msa1392120:intron | 35.0% | |
| TTTCATAGCTTTCAACTGAG+CGG | + | tig0021468:85059-85078 | None:intergenic | 35.0% | |
| AAAGCTATGAAACAAGTCTG+CGG | - | tig0021468:85067-85086 | Msa1392120:CDS | 35.0% | |
| GTAATTTATGCAGCTGTCAA+TGG | - | tig0021468:85256-85275 | Msa1392120:CDS | 35.0% | |
| !! | AGAAAAAGCGCTAACGAATT+AGG | - | tig0021468:85417-85436 | Msa1392120:CDS | 35.0% |
| ATGCAATGCACAAATTCTGA+TGG | - | tig0021468:85444-85463 | Msa1392120:CDS | 35.0% | |
| TGCAATGCACAAATTCTGAT+GGG | - | tig0021468:85445-85464 | Msa1392120:CDS | 35.0% | |
| AACCTTGATCCAGAAAGAAA+GGG | + | tig0021468:85499-85518 | None:intergenic | 35.0% | |
| TAACCTTGATCCAGAAAGAA+AGG | + | tig0021468:85500-85519 | None:intergenic | 35.0% | |
| ! | TTCTCCCATGCATAATTTGT+TGG | - | tig0021468:85538-85557 | Msa1392120:CDS | 35.0% |
| GTTGACCAACAAATTATGCA+TGG | + | tig0021468:85546-85565 | None:intergenic | 35.0% | |
| TTATAAACAATGATTCCCCC+CGG | + | tig0021468:85620-85639 | None:intergenic | 35.0% | |
| GGGAATTGAAGAAGATCAAT+CGG | + | tig0021468:85730-85749 | None:intergenic | 35.0% | |
| CGAAAACCAAAATCAGAATC+AGG | + | tig0021468:85858-85877 | None:intergenic | 35.0% | |
| TTCCATGAACAATTCTTTGC+GGG | + | tig0021468:85936-85955 | None:intergenic | 35.0% | |
| GTTCCATGAACAATTCTTTG+CGG | + | tig0021468:85937-85956 | None:intergenic | 35.0% | |
| GAACTACTATCGAGATTCTT+CGG | - | tig0021468:85953-85972 | Msa1392120:CDS | 35.0% | |
| ATGGTATAGCAATGAACATC+GGG | + | tig0021468:85999-86018 | None:intergenic | 35.0% | |
| GATGGTATAGCAATGAACAT+CGG | + | tig0021468:86000-86019 | None:intergenic | 35.0% | |
| ! | TCTTTTATACTCAATGGACG+AGG | - | tig0021468:86026-86045 | Msa1392120:CDS | 35.0% |
| !! | TCCAATAGCTTTGATAGTCA+TGG | + | tig0021468:86067-86086 | None:intergenic | 35.0% |
| TCAAAGCTATTGGACATCAA+TGG | - | tig0021468:86073-86092 | Msa1392120:CDS | 35.0% | |
| CTATTGGACATCAATGGTAT+CGG | - | tig0021468:86079-86098 | Msa1392120:CDS | 35.0% | |
| AAAAGTGAGTGACTGTTCAT+CGG | + | tig0021468:86133-86152 | None:intergenic | 35.0% | |
| ATTAGAAGTGGACAATAGAG+TGG | - | tig0021468:86203-86222 | Msa1392120:CDS | 35.0% | |
| TCTATTTCGGTACAAAGAGA+AGG | - | tig0021468:86345-86364 | Msa1392120:CDS | 35.0% | |
| CTATTTCGGTACAAAGAGAA+GGG | - | tig0021468:86346-86365 | Msa1392120:CDS | 35.0% | |
| TATTTCGGTACAAAGAGAAG+GGG | - | tig0021468:86347-86366 | Msa1392120:CDS | 35.0% | |
| GCTGTTCCTAGTAAAGATTA+TGG | - | tig0021468:86435-86454 | Msa1392120:CDS | 35.0% | |
| CGAGAACCATAATCTTTACT+AGG | + | tig0021468:86444-86463 | None:intergenic | 35.0% | |
| GATTGAACGAGATTCAAGCT+GGG | - | tig0021468:84051-84070 | Msa1392120:CDS | 40.0% | |
| ATTGAACGAGATTCAAGCTG+GGG | - | tig0021468:84052-84071 | Msa1392120:CDS | 40.0% | |
| GAATTGGTTGAATTTGCCAG+CGG | - | tig0021468:84074-84093 | Msa1392120:CDS | 40.0% | |
| CAAACGTACTGGATCTATTG+TGG | - | tig0021468:84187-84206 | Msa1392120:CDS | 40.0% | |
| ATCTATTGTGGATGTTCCTG+CGG | - | tig0021468:84199-84218 | Msa1392120:CDS | 40.0% | |
| GAGTACCTATTGATGGAAGA+GGG | - | tig0021468:84258-84277 | Msa1392120:CDS | 40.0% | |
| AGTACCTATTGATGGAAGAG+GGG | - | tig0021468:84259-84278 | Msa1392120:CDS | 40.0% | |
| ! | GCTTTTAACCCAGTTTGCAT+AGG | + | tig0021468:84359-84378 | None:intergenic | 40.0% |
| ! | CCCTTGAGTTCATTTGCTTT+TGG | + | tig0021468:84481-84500 | None:intergenic | 40.0% |
| ATACAATGTCTCACTCTCAG+AGG | + | tig0021468:84507-84526 | None:intergenic | 40.0% | |
| !! | AATTTCTGGCCCCATATTCT+GGG | - | tig0021468:84654-84673 | Msa1392120:CDS | 40.0% |
| TGACATTTGTCGATATGCCA+CGG | + | tig0021468:84753-84772 | None:intergenic | 40.0% | |
| TCTTAGAAAGAGCCGCAAAA+CGG | - | tig0021468:84840-84859 | Msa1392120:intron | 40.0% | |
| !! | TTGTGTTTCAATGACGGGTA+AGG | + | tig0021468:84897-84916 | None:intergenic | 40.0% |
| TCCAGCTTGTGTTTCAATGA+CGG | + | tig0021468:84903-84922 | None:intergenic | 40.0% | |
| ! | CGTAATGGAGATAACATTGG+TGG | + | tig0021468:84945-84964 | None:intergenic | 40.0% |
| ACAGATTTGTCCATCCGTAA+TGG | + | tig0021468:84960-84979 | None:intergenic | 40.0% | |
| TACGGATGGACAAATCTGTT+TGG | - | tig0021468:84961-84980 | Msa1392120:intron | 40.0% | |
| ! | GAAACAGAGCTCTTTTATCG+CGG | - | tig0021468:84983-85002 | Msa1392120:intron | 40.0% |
| ACTCAGGCATTACTCAATAG+AGG | - | tig0021468:85166-85185 | Msa1392120:CDS | 40.0% | |
| ! | CATTACTCAATAGAGGTGCA+AGG | - | tig0021468:85173-85192 | Msa1392120:CDS | 40.0% |
| ATTGGAAGTGGTGCATATTG+TGG | + | tig0021468:85220-85239 | None:intergenic | 40.0% | |
| !! | TCACTAAAAGGTGGACTAAC+TGG | - | tig0021468:85361-85380 | Msa1392120:CDS | 40.0% |
| ! | AAAGCGCTAACGAATTAGGT+AGG | - | tig0021468:85421-85440 | Msa1392120:CDS | 40.0% |
| ACCTTGATCCAGAAAGAAAG+GGG | + | tig0021468:85498-85517 | None:intergenic | 40.0% | |
| CATGGGAGAAAGATTCACAA+AGG | + | tig0021468:85528-85547 | None:intergenic | 40.0% | |
| ! | ATACCCAAGATTTTCTTCGC+AGG | - | tig0021468:85659-85678 | Msa1392120:CDS | 40.0% |
| CATCCTGCGAAGAAAATCTT+GGG | + | tig0021468:85665-85684 | None:intergenic | 40.0% | |
| GAAGAAGATCAATCGGAAGA+AGG | + | tig0021468:85723-85742 | None:intergenic | 40.0% | |
| GAACAATTCTTTGCGGGATT+GGG | + | tig0021468:85930-85949 | None:intergenic | 40.0% | |
| TGAACAATTCTTTGCGGGAT+TGG | + | tig0021468:85931-85950 | None:intergenic | 40.0% | |
| ATCCCGCAAAGAATTGTTCA+TGG | - | tig0021468:85931-85950 | Msa1392120:CDS | 40.0% | |
| CGGGATGATACTAGGAAATA+TGG | + | tig0021468:85980-85999 | None:intergenic | 40.0% | |
| ATGAACATCGGGATGATACT+AGG | + | tig0021468:85988-86007 | None:intergenic | 40.0% | |
| !! | ATAGCTTTGATAGTCATGGC+TGG | + | tig0021468:86063-86082 | None:intergenic | 40.0% |
| GCCATGACTATCAAAGCTAT+TGG | - | tig0021468:86063-86082 | Msa1392120:intron | 40.0% | |
| ! | TCCGGAAGATGATCTAGAAT+TGG | - | tig0021468:86167-86186 | Msa1392120:CDS | 40.0% |
| CCCAATTCTAGATCATCTTC+CGG | + | tig0021468:86171-86190 | None:intergenic | 40.0% | |
| ! | CCGGAAGATGATCTAGAATT+GGG | - | tig0021468:86168-86187 | Msa1392120:CDS | 40.0% |
| !! | ATACGTAGATGAGTTTTGGC+TGG | + | tig0021468:86234-86253 | None:intergenic | 40.0% |
| TGCTGATGTACCTCATAGTT+GGG | - | tig0021468:86266-86285 | Msa1392120:CDS | 40.0% | |
| TCACATTTGACACCTAAGGA+AGG | + | tig0021468:86297-86316 | None:intergenic | 40.0% | |
| AGCATCACATTTGACACCTA+AGG | + | tig0021468:86301-86320 | None:intergenic | 40.0% | |
| GAGATCTGATTTAAACGACC+AGG | + | tig0021468:86327-86346 | None:intergenic | 40.0% | |
| CAAAGAGAAGGGGTTTACTA+TGG | - | tig0021468:86357-86376 | Msa1392120:CDS | 40.0% | |
| GGAATTCTCTGTAAGAGCTG+CGG | - | tig0021468:83920-83939 | Msa1392120:CDS | 45.0% | |
| GATGGGATTGCACGTGTTTA+TGG | - | tig0021468:84029-84048 | Msa1392120:CDS | 45.0% | |
| GGATTGAACGAGATTCAAGC+TGG | - | tig0021468:84050-84069 | Msa1392120:CDS | 45.0% | |
| GGAGATCTTGTCAAACGTAC+TGG | - | tig0021468:84176-84195 | Msa1392120:CDS | 45.0% | |
| TCTATTGTGGATGTTCCTGC+GGG | - | tig0021468:84200-84219 | Msa1392120:CDS | 45.0% | |
| ! | GGAGTACCTATTGATGGAAG+AGG | - | tig0021468:84257-84276 | Msa1392120:CDS | 45.0% |
| GTTAAAAGCGGTAGATAGCC+TGG | - | tig0021468:84370-84389 | Msa1392120:CDS | 45.0% | |
| GTAGATAGCCTGGTTCCTAT+AGG | - | tig0021468:84380-84399 | Msa1392120:CDS | 45.0% | |
| !! | CAATTTCTGGCCCCATATTC+TGG | - | tig0021468:84653-84672 | Msa1392120:CDS | 45.0% |
| GGGGAATATTTCCGCGATAA+TGG | - | tig0021468:84686-84705 | Msa1392120:intron | 45.0% | |
| ATGCGTGCATTCCATTATCG+CGG | + | tig0021468:84700-84719 | None:intergenic | 45.0% | |
| TGATCTTAGTAAACAGGCCG+TGG | - | tig0021468:84733-84752 | Msa1392120:intron | 45.0% | |
| ! | TTGCGGCTCTTTCTAAGAGA+CGG | + | tig0021468:84838-84857 | None:intergenic | 45.0% |
| !! | TGTTTCAATGACGGGTAAGG+CGG | + | tig0021468:84894-84913 | None:intergenic | 45.0% |
| CCAGCTTGTGTTTCAATGAC+GGG | + | tig0021468:84902-84921 | None:intergenic | 45.0% | |
| AACACAAGCTGGAGACGTAT+CGG | - | tig0021468:84910-84929 | Msa1392120:intron | 45.0% | |
| GATAAGCCGACGTTAATAGC+AGG | + | tig0021468:85016-85035 | None:intergenic | 45.0% | |
| ATTGGCACAATATCGCGAAG+TGG | - | tig0021468:85105-85124 | Msa1392120:CDS | 45.0% | |
| TGAGCCAAATTGAGCAAAGG+CGG | + | tig0021468:85131-85150 | None:intergenic | 45.0% | |
| GTCTGAGCCAAATTGAGCAA+AGG | + | tig0021468:85134-85153 | None:intergenic | 45.0% | |
| GCATCCTGCGAAGAAAATCT+TGG | + | tig0021468:85666-85685 | None:intergenic | 45.0% | |
| TCGGAAGAAGGACTAAGCAA+AGG | + | tig0021468:85711-85730 | None:intergenic | 45.0% | |
| ! | GGTTTTCGTATCACGGATCT+TGG | - | tig0021468:85870-85889 | Msa1392120:intron | 45.0% |
| CTGCTGATGTACCTCATAGT+TGG | - | tig0021468:86265-86284 | Msa1392120:CDS | 45.0% | |
| GTCAAATGTGATGCTGTACC+TGG | - | tig0021468:86306-86325 | Msa1392120:intron | 45.0% | |
| TTCTACGACGATAGGCGTAA+AGG | + | tig0021468:86415-86434 | None:intergenic | 45.0% | |
| GAGTGGTCTCAGTTGGAGAT+GGG | - | tig0021468:84012-84031 | Msa1392120:CDS | 50.0% | |
| CGAGATTCAAGCTGGGGAAT+TGG | - | tig0021468:84058-84077 | Msa1392120:CDS | 50.0% | |
| GAATTTGCCAGCGGTGTGAA+AGG | - | tig0021468:84083-84102 | Msa1392120:CDS | 50.0% | |
| !! | GCGTTGGGAGTACCTATTGA+TGG | - | tig0021468:84251-84270 | Msa1392120:CDS | 50.0% |
| AGAGCCCCTCTTCCATCAAT+AGG | + | tig0021468:84266-84285 | None:intergenic | 50.0% | |
| TGCACGAGCCTATGCAAACT+GGG | - | tig0021468:84348-84367 | Msa1392120:CDS | 50.0% | |
| ATAATCGGGGACCGACAAAC+TGG | - | tig0021468:84422-84441 | Msa1392120:CDS | 50.0% | |
| CAATGTCTCACTCTCAGAGG+TGG | + | tig0021468:84504-84523 | None:intergenic | 50.0% | |
| TGGACAGAAACGCTCAACTG+TGG | - | tig0021468:84544-84563 | Msa1392120:CDS | 50.0% | |
| TCCTGCACCTCTGCAATTTC+TGG | - | tig0021468:84640-84659 | Msa1392120:CDS | 50.0% | |
| TATGGGGCCAGAAATTGCAG+AGG | + | tig0021468:84650-84669 | None:intergenic | 50.0% | |
| CATGGCACACCCAGAATATG+GGG | + | tig0021468:84666-84685 | None:intergenic | 50.0% | |
| CCATGGCACACCCAGAATAT+GGG | + | tig0021468:84667-84686 | None:intergenic | 50.0% | |
| CCATATTCTGGGTGTGCCAT+GGG | - | tig0021468:84665-84684 | Msa1392120:CDS | 50.0% | |
| CATATTCTGGGTGTGCCATG+GGG | - | tig0021468:84666-84685 | Msa1392120:CDS | 50.0% | |
| ATATTCTGGGTGTGCCATGG+GGG | - | tig0021468:84667-84686 | Msa1392120:CDS | 50.0% | |
| ATCGCGGAAATATTCCCCCA+TGG | + | tig0021468:84684-84703 | None:intergenic | 50.0% | |
| TTATTGTTACGCCGACCACC+AGG | - | tig0021468:84773-84792 | Msa1392120:intron | 50.0% | |
| ! | TGCGGCTCTTTCTAAGAGAC+GGG | + | tig0021468:84837-84856 | None:intergenic | 50.0% |
| ! | TGTCTGGTCAGACCGTTTTG+CGG | + | tig0021468:84855-84874 | None:intergenic | 50.0% |
| CCCGTCATTGAAACACAAGC+TGG | - | tig0021468:84899-84918 | Msa1392120:intron | 50.0% | |
| GCCCCTTTCTTTCTGGATCA+AGG | - | tig0021468:85494-85513 | Msa1392120:CDS | 50.0% | |
| GCAGCAACACCTATGATGCA+AGG | - | tig0021468:85799-85818 | Msa1392120:CDS | 50.0% | |
| ! | GAAGGTACAGCCCAACTATG+AGG | + | tig0021468:86279-86298 | None:intergenic | 50.0% |
| AGTTGGGCTGTACCTTCCTT+AGG | - | tig0021468:86282-86301 | Msa1392120:CDS | 50.0% | |
| GGTCAGTGCAGTGAGATTTG+TGG | - | tig0021468:86378-86397 | Msa1392120:CDS | 50.0% | |
| GGAACAGCTTCTACGACGAT+AGG | + | tig0021468:86423-86442 | None:intergenic | 50.0% | |
| AGTGGATGAGATCGGTCGAG+TGG | - | tig0021468:83995-84014 | Msa1392120:CDS | 55.0% | |
| ATCGGTCGAGTGGTCTCAGT+TGG | - | tig0021468:84005-84024 | Msa1392120:CDS | 55.0% | |
| CGAGTGGTCTCAGTTGGAGA+TGG | - | tig0021468:84011-84030 | Msa1392120:CDS | 55.0% | |
| CGCTATTCCTTTCACACCGC+TGG | + | tig0021468:84093-84112 | None:intergenic | 55.0% | |
| TGTGGATGTTCCTGCGGGAA+AGG | - | tig0021468:84205-84224 | Msa1392120:CDS | 55.0% | |
| CTGCGGGAAAGGCTATGCTA+GGG | - | tig0021468:84216-84235 | Msa1392120:CDS | 55.0% | |
| AAAGGCTATGCTAGGGCGTG+TGG | - | tig0021468:84223-84242 | Msa1392120:CDS | 55.0% | |
| GTGTCGAAGTGAAAGCCCCA+GGG | - | tig0021468:84306-84325 | Msa1392120:CDS | 55.0% | |
| GTGCACGAGCCTATGCAAAC+TGG | - | tig0021468:84347-84366 | Msa1392120:CDS | 55.0% | |
| TCTCGTTGACCACGGCCTAT+AGG | + | tig0021468:84398-84417 | None:intergenic | 55.0% | |
| AGCGGTGGCTGCTACAAGAA+TGG | + | tig0021468:84615-84634 | None:intergenic | 55.0% | |
| TCTTGTAGCAGCCACCGCTT+CGG | - | tig0021468:84616-84635 | Msa1392120:CDS | 55.0% | |
| ! | GCCAGAAATTGCAGAGGTGC+AGG | + | tig0021468:84644-84663 | None:intergenic | 55.0% |
| CCCATATTCTGGGTGTGCCA+TGG | - | tig0021468:84664-84683 | Msa1392120:CDS | 55.0% | |
| CCCATGGCACACCCAGAATA+TGG | + | tig0021468:84668-84687 | None:intergenic | 55.0% | |
| GCAAAACGGTCTGACCAGAC+AGG | - | tig0021468:84854-84873 | Msa1392120:intron | 55.0% | |
| GGCTTATCTGTCAGTCGCGT+CGG | - | tig0021468:85028-85047 | Msa1392120:intron | 55.0% | |
| GCTTATCTGTCAGTCGCGTC+GGG | - | tig0021468:85029-85048 | Msa1392120:intron | 55.0% | |
| GTGGCCGCCTTTGCTCAATT+TGG | - | tig0021468:85124-85143 | Msa1392120:CDS | 55.0% | |
| AGACCTTGATGCTGCGACTC+AGG | - | tig0021468:85150-85169 | Msa1392120:CDS | 55.0% | |
| ATGCCTGAGTCGCAGCATCA+AGG | + | tig0021468:85156-85175 | None:intergenic | 55.0% | |
| !! | TTCATCGCATCGGGTTGGGT+TGG | + | tig0021468:85471-85490 | None:intergenic | 55.0% |
| AACCCAACCCGATGCGATGA+AGG | - | tig0021468:85470-85489 | Msa1392120:CDS | 55.0% | |
| ACCCAACCCGATGCGATGAA+GGG | - | tig0021468:85471-85490 | Msa1392120:CDS | 55.0% | |
| TGAAGGGGCCCCTTTCTTTC+TGG | - | tig0021468:85487-85506 | Msa1392120:CDS | 55.0% | |
| CTCCGGACAGAAAGAGAGTC+CGG | - | tig0021468:85598-85617 | Msa1392120:intron | 55.0% | |
| TCCGGACAGAAAGAGAGTCC+GGG | - | tig0021468:85599-85618 | Msa1392120:intron | 55.0% | |
| ! | CTGCATCAGAAAGAGCGCAG+GGG | + | tig0021468:85750-85769 | None:intergenic | 55.0% |
| ! | GCTGCATCAGAAAGAGCGCA+GGG | + | tig0021468:85751-85770 | None:intergenic | 55.0% |
| CTGCGCTCTTTCTGATGCAG+CGG | - | tig0021468:85750-85769 | Msa1392120:CDS | 55.0% | |
| GCAGCGGACCCATTGCAATT+AGG | - | tig0021468:85766-85785 | Msa1392120:CDS | 55.0% | |
| ! | GGATCTTGGTTCGCGCTTTG+TGG | - | tig0021468:85884-85903 | Msa1392120:CDS | 55.0% |
| CCTAGCATAGCCTTTCCCGC+AGG | + | tig0021468:84218-84237 | None:intergenic | 60.0% | |
| CCTGCGGGAAAGGCTATGCT+AGG | - | tig0021468:84215-84234 | Msa1392120:CDS | 60.0% | |
| CGTGTCGAAGTGAAAGCCCC+AGG | - | tig0021468:84305-84324 | Msa1392120:CDS | 60.0% | |
| AGCCTGGTTCCTATAGGCCG+TGG | - | tig0021468:84386-84405 | Msa1392120:CDS | 60.0% | |
| GACCACGGCCTATAGGAACC+AGG | + | tig0021468:84391-84410 | None:intergenic | 60.0% | |
| ! | CAGAGGTGCAGGATCCGAAG+CGG | + | tig0021468:84633-84652 | None:intergenic | 60.0% |
| CATCGCCTGGGAAAGCCTCA+CGG | + | tig0021468:84799-84818 | None:intergenic | 60.0% | |
| TCAAGCTACCTGCGCCTGTC+TGG | + | tig0021468:84871-84890 | None:intergenic | 60.0% | |
| CCCCTTCATCGCATCGGGTT+GGG | + | tig0021468:85475-85494 | None:intergenic | 60.0% | |
| CCCAACCCGATGCGATGAAG+GGG | - | tig0021468:85472-85491 | Msa1392120:CDS | 60.0% | |
| AAGGGGCCCCTTCATCGCAT+CGG | + | tig0021468:85481-85500 | None:intergenic | 60.0% | |
| CCCCGGACTCTCTTTCTGTC+CGG | + | tig0021468:85603-85622 | None:intergenic | 60.0% | |
| CCGGACAGAAAGAGAGTCCG+GGG | - | tig0021468:85600-85619 | Msa1392120:intron | 60.0% | |
| CGGACAGAAAGAGAGTCCGG+GGG | - | tig0021468:85601-85620 | Msa1392120:intron | 60.0% | |
| GGACAGAAAGAGAGTCCGGG+GGG | - | tig0021468:85602-85621 | Msa1392120:intron | 60.0% | |
| ! | CGCTGCATCAGAAAGAGCGC+AGG | + | tig0021468:85752-85771 | None:intergenic | 60.0% |
| AGGTGCAGGATCCGAAGCGG+TGG | + | tig0021468:84630-84649 | None:intergenic | 65.0% | |
| AAGCCTCACGGCCTGGTGGT+CGG | + | tig0021468:84787-84806 | None:intergenic | 65.0% | |
| GCCCCTTCATCGCATCGGGT+TGG | + | tig0021468:85476-85495 | None:intergenic | 65.0% | |
| AGGGGCCCCTTCATCGCATC+GGG | + | tig0021468:85480-85499 | None:intergenic | 65.0% | |
| AGGGCGTGTGGTCGACGCGT+TGG | - | tig0021468:84235-84254 | Msa1392120:CDS | 70.0% | |
| GGGCGTGTGGTCGACGCGTT+GGG | - | tig0021468:84236-84255 | Msa1392120:CDS | 70.0% | |
| GGGAAAGCCTCACGGCCTGG+TGG | + | tig0021468:84791-84810 | None:intergenic | 70.0% | |
| CCTGGGAAAGCCTCACGGCC+TGG | + | tig0021468:84794-84813 | None:intergenic | 70.0% | |
| CCAGGCCGTGAGGCTTTCCC+AGG | - | tig0021468:84791-84810 | Msa1392120:intron | 70.0% | |
| CGGTCTGACCAGACAGGCGC+AGG | - | tig0021468:84860-84879 | Msa1392120:intron | 70.0% | |
| ACGCCGACCACCAGGCCGTG+AGG | - | tig0021468:84781-84800 | Msa1392120:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021468 | gene | 83918 | 86488 | 83918 | ID=Msa1392120;Name=Msa1392120 |
| tig0021468 | mRNA | 83918 | 86488 | 83918 | ID=Msa1392120-mRNA-1;Parent=Msa1392120;Name=Msa1392120-mRNA-1;_AED=0.09;_eAED=0.11;_QI=0|0|0|1|0|0|7|0|701 |
| tig0021468 | exon | 86311 | 86488 | 86311 | ID=Msa1392120-mRNA-1:exon:13011;Parent=Msa1392120-mRNA-1 |
| tig0021468 | exon | 86068 | 86301 | 86068 | ID=Msa1392120-mRNA-1:exon:13010;Parent=Msa1392120-mRNA-1 |
| tig0021468 | exon | 85871 | 86058 | 85871 | ID=Msa1392120-mRNA-1:exon:13009;Parent=Msa1392120-mRNA-1 |
| tig0021468 | exon | 85609 | 85855 | 85609 | ID=Msa1392120-mRNA-1:exon:13008;Parent=Msa1392120-mRNA-1 |
| tig0021468 | exon | 85318 | 85560 | 85318 | ID=Msa1392120-mRNA-1:exon:13007;Parent=Msa1392120-mRNA-1 |
| tig0021468 | exon | 85036 | 85281 | 85036 | ID=Msa1392120-mRNA-1:exon:13006;Parent=Msa1392120-mRNA-1 |
| tig0021468 | exon | 83918 | 84687 | 83918 | ID=Msa1392120-mRNA-1:exon:13005;Parent=Msa1392120-mRNA-1 |
| tig0021468 | CDS | 86311 | 86488 | 86311 | ID=Msa1392120-mRNA-1:cds;Parent=Msa1392120-mRNA-1 |
| tig0021468 | CDS | 86068 | 86301 | 86068 | ID=Msa1392120-mRNA-1:cds;Parent=Msa1392120-mRNA-1 |
| tig0021468 | CDS | 85871 | 86058 | 85871 | ID=Msa1392120-mRNA-1:cds;Parent=Msa1392120-mRNA-1 |
| tig0021468 | CDS | 85609 | 85855 | 85609 | ID=Msa1392120-mRNA-1:cds;Parent=Msa1392120-mRNA-1 |
| tig0021468 | CDS | 85318 | 85560 | 85318 | ID=Msa1392120-mRNA-1:cds;Parent=Msa1392120-mRNA-1 |
| tig0021468 | CDS | 85036 | 85281 | 85036 | ID=Msa1392120-mRNA-1:cds;Parent=Msa1392120-mRNA-1 |
| tig0021468 | CDS | 83918 | 84687 | 83918 | ID=Msa1392120-mRNA-1:cds;Parent=Msa1392120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
