Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0921980 | AES76078.2 | 84.116 | 277 | 14 | 2 | 4 | 250 | 1 | 277 | 3.65e-161 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062340 | Msa0921980 | 0.811618 | 6.399508e-51 | -8.615850e-47 |
| Msa0620500 | Msa0921980 | 0.801785 | 7.643476e-49 | -8.615850e-47 |
| Msa0373500 | Msa0921980 | 0.812853 | 3.440543e-51 | -8.615850e-47 |
| Msa0468620 | Msa0921980 | 0.817212 | 3.706424e-52 | -8.615850e-47 |
| Msa0514500 | Msa0921980 | 0.819665 | 1.030942e-52 | -8.615850e-47 |
| Msa0921980 | Msa0960770 | 0.848145 | 7.386916e-60 | -8.615850e-47 |
| Msa0921980 | Msa0989370 | 0.806288 | 8.846245e-50 | -8.615850e-47 |
| Msa0921980 | Msa1127280 | 0.810962 | 8.878462e-51 | -8.615850e-47 |
| Msa0921980 | Msa1165480 | 0.804494 | 2.102562e-49 | -8.615850e-47 |
| Msa0921980 | Msa1190390 | 0.803870 | 2.836413e-49 | -8.615850e-47 |
| Msa0921980 | Msa1218820 | 0.801463 | 8.898470e-49 | -8.615850e-47 |
| Msa0921980 | Msa1387440 | 0.801664 | 8.093201e-49 | -8.615850e-47 |
| Msa0921980 | Msa1454010 | 0.805365 | 1.382448e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0921980 | MtrunA17_Chr6g0479091 | 84.116 | 277 | 14 | 2 | 4 | 250 | 1 | 277 | 3.62e-165 | 458 |
| Msa0921980 | MtrunA17_Chr5g0402951 | 28.862 | 246 | 124 | 9 | 12 | 245 | 29 | 235 | 2.51e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0921980 | AT4G37110.1 | 30.980 | 255 | 130 | 9 | 12 | 247 | 29 | 256 | 8.44e-18 | 82.4 |
| Msa0921980 | AT4G37110.2 | 31.349 | 252 | 120 | 10 | 12 | 247 | 29 | 243 | 2.49e-14 | 72.0 |
| Msa0921980 | AT4G37110.3 | 32.164 | 171 | 79 | 8 | 94 | 247 | 11 | 161 | 2.85e-11 | 62.8 |
| Msa0921980 | AT4G37110.4 | 32.164 | 171 | 79 | 8 | 94 | 247 | 11 | 161 | 2.85e-11 | 62.8 |
Find 58 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGGTAACTGCAGAAAA+TGG | 0.213288 | 6_2:+59757446 | Msa0921980:intron |
| AACAACGTACACCTGTTAAA+AGG | 0.219507 | 6_2:+59756349 | Msa0921980:CDS |
| ACACCTGTTAAAAGGGTTTA+TGG | 0.240841 | 6_2:+59756357 | Msa0921980:CDS |
| CAGTATCTACAATCCAGTTT+TGG | 0.310852 | 6_2:+59757613 | Msa0921980:CDS |
| GAAGGCTAGGTTAGAATCTC+TGG | 0.325671 | 6_2:+59756272 | Msa0921980:intron |
| AGAAAGGAATAAGACCTTAT+TGG | 0.336569 | 6_2:+59759144 | Msa0921980:CDS |
| GTACGTTGTTGTTTCTTAGT+TGG | 0.358362 | 6_2:-59756336 | None:intergenic |
| GACCTTATTGGATATGTAAC+AGG | 0.372337 | 6_2:+59759156 | Msa0921980:CDS |
| AGAAAATGCTCTACATCCTT+CGG | 0.383546 | 6_2:-59757545 | None:intergenic |
| AAACGAAAGATGTCGCCAAC+TGG | 0.392964 | 6_2:+59759343 | Msa0921980:CDS |
| TGGCAGCATATCCCCAAAAC+TGG | 0.395004 | 6_2:-59757626 | None:intergenic |
| GAAAATGCTCTACATCCTTC+GGG | 0.396073 | 6_2:-59757544 | None:intergenic |
| AAAAGGTAACTGCAGAAAAT+GGG | 0.406202 | 6_2:+59757447 | Msa0921980:CDS |
| TGCGCGGCGCTGCGATAGCA+AGG | 0.412089 | 6_2:+59757583 | Msa0921980:CDS |
| ACAACGTACACCTGTTAAAA+GGG | 0.463307 | 6_2:+59756350 | Msa0921980:CDS |
| CATCCTTGATTCGCTGAGAT+CGG | 0.480008 | 6_2:-59756395 | None:intergenic |
| TACCTGTTACATATCCAATA+AGG | 0.483081 | 6_2:-59759158 | None:intergenic |
| GATGTGAATGAACCTTGTTT+AGG | 0.485053 | 6_2:+59758360 | Msa0921980:CDS |
| GTTTCTAAGAGATTCGTAAT+CGG | 0.494486 | 6_2:-59756127 | None:intergenic |
| CCTTTCTCTTCTATGCAATG+TGG | 0.502029 | 6_2:-59759128 | None:intergenic |
| CGCTGCGATAGCAAGGGTAG+AGG | 0.503993 | 6_2:+59757590 | Msa0921980:CDS |
| CGCTCGCATGTCAGAAAACA+AGG | 0.512896 | 6_2:+59756149 | Msa0921980:CDS |
| AAGAAGATTGCAAGAGATGT+GGG | 0.513623 | 6_2:+59758331 | Msa0921980:CDS |
| CTTTCTCTTCTATGCAATGT+GGG | 0.517606 | 6_2:-59759127 | None:intergenic |
| ATTCGCTGAGATCGGCGCAC+TGG | 0.525686 | 6_2:-59756387 | None:intergenic |
| GGTAAGATCGTCGCTGAGGA+AGG | 0.531836 | 6_2:-59756458 | None:intergenic |
| TTGTAACTACTGATGAGAAA+AGG | 0.533068 | 6_2:+59757492 | Msa0921980:CDS |
| CGCCGGTACTGTTACTGCCG+CGG | 0.533903 | 6_2:+59756422 | Msa0921980:CDS |
| GCGCCGATCTCAGCGAATCA+AGG | 0.543159 | 6_2:+59756392 | Msa0921980:CDS |
| GCAGGCAAAAGAAATTGTGC+GGG | 0.547067 | 6_2:+59758307 | Msa0921980:intron |
| AGGTGCGAGAGAACAAGGAA+TGG | 0.549633 | 6_2:+59759099 | Msa0921980:CDS |
| AGAATATGGACCTGCAAAAG+TGG | 0.553469 | 6_2:-59757646 | None:intergenic |
| GAAGAAGATTGCAAGAGATG+TGG | 0.555689 | 6_2:+59758330 | Msa0921980:CDS |
| TCAATGAGAGGTGCATTCGC+AGG | 0.556862 | 6_2:-59757515 | None:intergenic |
| GGAGGAGGTGCGAGAGAACA+AGG | 0.559477 | 6_2:+59759094 | Msa0921980:CDS |
| TGCAGAAAATGGGGAAGAAG+AGG | 0.565772 | 6_2:+59757457 | Msa0921980:CDS |
| AAGGCTAGGTTAGAATCTCT+GGG | 0.566168 | 6_2:+59756273 | Msa0921980:intron |
| TCTTTCTGATGCAGAAATGG+AGG | 0.571930 | 6_2:+59759076 | Msa0921980:intron |
| TGCCGCGGCAGTAACAGTAC+CGG | 0.577556 | 6_2:-59756424 | None:intergenic |
| CCACATTGCATAGAAGAGAA+AGG | 0.579806 | 6_2:+59759128 | Msa0921980:CDS |
| AACGAAAGATGTCGCCAACT+GGG | 0.580211 | 6_2:+59759344 | Msa0921980:CDS |
| GCGCGGCGCTGCGATAGCAA+GGG | 0.581578 | 6_2:+59757584 | Msa0921980:CDS |
| TTCTGATGCAGAAATGGAGG+AGG | 0.588072 | 6_2:+59759079 | Msa0921980:intron |
| AAGGTCGTCGAGCGTTGCCG+CGG | 0.594543 | 6_2:-59756439 | None:intergenic |
| CGAATCAAGGATGTTTCCGC+CGG | 0.595951 | 6_2:+59756405 | Msa0921980:CDS |
| TGCAGGCAAAAGAAATTGTG+CGG | 0.602252 | 6_2:+59758306 | Msa0921980:intron |
| TACGCCATTACGCCAAAACA+AGG | 0.604331 | 6_2:+59756501 | Msa0921980:CDS |
| AAAGGTAACTGCAGAAAATG+GGG | 0.611139 | 6_2:+59757448 | Msa0921980:CDS |
| TTCGGGTTCAGTTCAATGAG+AGG | 0.620452 | 6_2:-59757527 | None:intergenic |
| CGCGGCAGTAACAGTACCGG+CGG | 0.623331 | 6_2:-59756421 | None:intergenic |
| AATCAAATCTTACCTAAACA+AGG | 0.650664 | 6_2:-59758372 | None:intergenic |
| GTGTGTATTGCAATCCCAGT+TGG | 0.660496 | 6_2:-59759358 | None:intergenic |
| TCTCATTGAACTGAACCCGA+AGG | 0.675873 | 6_2:+59757529 | Msa0921980:CDS |
| TATGCAGCTCAATATGCATG+AGG | 0.683395 | 6_2:+59759320 | Msa0921980:intron |
| AAACGGTAAGATCGTCGCTG+AGG | 0.683773 | 6_2:-59756462 | None:intergenic |
| ACTGGGATTGCAATACACAC+AGG | 0.706206 | 6_2:+59759361 | Msa0921980:CDS |
| CAGGCAAAAGAAATTGTGCG+GGG | 0.721318 | 6_2:+59758308 | Msa0921980:intron |
| TTTCAGAAGAGATTTCTGCG+CGG | 0.814056 | 6_2:+59757567 | Msa0921980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATAAAAAAAAA+TGG | + | chr6_2:59756074-59756093 | Msa0921980:exon | 0.0% |
| !! | AAAAAAAAATAAAAAAAAAT+GGG | + | chr6_2:59756075-59756094 | Msa0921980:exon | 0.0% |
| !! | TTTGAAAAATATATATTACA+TGG | + | chr6_2:59756601-59756620 | Msa0921980:intron | 10.0% |
| !! | AATGTTTGTTTAAAAAAATT+AGG | + | chr6_2:59756708-59756727 | Msa0921980:intron | 10.0% |
| !! | TAATAATAATGAAGAGATTA+GGG | - | chr6_2:59756190-59756209 | None:intergenic | 15.0% |
| !! | ATAATAATAATGAAGAGATT+AGG | - | chr6_2:59756191-59756210 | None:intergenic | 15.0% |
| !!! | TGATTTTATCAAATTATTAG+CGG | - | chr6_2:59756793-59756812 | None:intergenic | 15.0% |
| !! | AAAATTAAAAGAACATCTAA+TGG | - | chr6_2:59757090-59757109 | None:intergenic | 15.0% |
| !! | CTAATCTAAATATTAACAAT+TGG | - | chr6_2:59757319-59757338 | None:intergenic | 15.0% |
| !!! | CAATTTAGTTGATTTTTAAA+TGG | - | chr6_2:59758165-59758184 | None:intergenic | 15.0% |
| !!! | TCTATTTTTTGTTATAAAAC+TGG | + | chr6_2:59758737-59758756 | Msa0921980:intron | 15.0% |
| !! | TATCAATTAAGGTAATAAAA+TGG | - | chr6_2:59759302-59759321 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTGATGTGTT+GGG | - | chr6_2:59756064-59756083 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTGTGATGTGT+TGG | - | chr6_2:59756065-59756084 | None:intergenic | 20.0% |
| !!! | GTTAAATAAAAACCTTGTTT+TGG | - | chr6_2:59756516-59756535 | None:intergenic | 20.0% |
| !! | ATTTAGTGTAATAATATGTG+TGG | + | chr6_2:59756817-59756836 | Msa0921980:intron | 20.0% |
| !! | TTTAGTGTAATAATATGTGT+GGG | + | chr6_2:59756818-59756837 | Msa0921980:intron | 20.0% |
| !! | TAAGATATATGTGAAAATGA+AGG | + | chr6_2:59757281-59757300 | Msa0921980:intron | 20.0% |
| !! | TTAGATTAGATATAGATTAG+AGG | + | chr6_2:59757330-59757349 | Msa0921980:intron | 20.0% |
| !! | TACAAAATATTGTCAAATAG+AGG | + | chr6_2:59757902-59757921 | Msa0921980:intron | 20.0% |
| !! | TGATAACATCAATGTATATA+AGG | + | chr6_2:59758071-59758090 | Msa0921980:intron | 20.0% |
| !!! | ACTCTTTTAACATGTTATTT+AGG | - | chr6_2:59758211-59758230 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+TGG | + | chr6_2:59758805-59758824 | Msa0921980:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATT+GGG | + | chr6_2:59758806-59758825 | Msa0921980:intron | 20.0% |
| !!! | ATGTGTATAGAATGTTTTAA+AGG | + | chr6_2:59759243-59759262 | Msa0921980:intron | 20.0% |
| !! | TTATGTTGATGAATGATTGA+AGG | + | chr6_2:59756254-59756273 | Msa0921980:intron | 25.0% |
| ! | AAACAGAGACAAGAAAATTA+GGG | - | chr6_2:59756538-59756557 | None:intergenic | 25.0% |
| ! | TCTTTGCATTAGCATATTAA+GGG | + | chr6_2:59756624-59756643 | Msa0921980:intron | 25.0% |
| !!! | TCTACTTTTGTGTAGAAAAA+GGG | - | chr6_2:59757684-59757703 | None:intergenic | 25.0% |
| !!! | ATCTACTTTTGTGTAGAAAA+AGG | - | chr6_2:59757685-59757704 | None:intergenic | 25.0% |
| ! | TATAATGACCTAGTATTCTT+TGG | + | chr6_2:59757708-59757727 | Msa0921980:intron | 25.0% |
| !! | GTAACAAACTTAGACATTTT+GGG | - | chr6_2:59757735-59757754 | None:intergenic | 25.0% |
| !! | AGTAACAAACTTAGACATTT+TGG | - | chr6_2:59757736-59757755 | None:intergenic | 25.0% |
| !!! | AAAATGTCTAAGTTTGTTAC+TGG | + | chr6_2:59757735-59757754 | Msa0921980:intron | 25.0% |
| !!! | AAATGTCTAAGTTTGTTACT+GGG | + | chr6_2:59757736-59757755 | Msa0921980:intron | 25.0% |
| ! | ATAACACTGTTGTTAAATAG+TGG | + | chr6_2:59757801-59757820 | Msa0921980:intron | 25.0% |
| !!! | TTAAACATAACCGCTATTTT+TGG | + | chr6_2:59757964-59757983 | Msa0921980:intron | 25.0% |
| !! | TAGCATTTTACCAAAAATAG+CGG | - | chr6_2:59757977-59757996 | None:intergenic | 25.0% |
| ! | AAATGCTATTGACAAAATTG+AGG | + | chr6_2:59757989-59758008 | Msa0921980:intron | 25.0% |
| ! | AATCAAATCTTACCTAAACA+AGG | - | chr6_2:59758375-59758394 | None:intergenic | 25.0% |
| ! | AGACATGCTCAAATAAATAA+AGG | + | chr6_2:59758554-59758573 | Msa0921980:intron | 25.0% |
| !! | CAAATAAATAAAGGCATGTT+AGG | + | chr6_2:59758563-59758582 | Msa0921980:intron | 25.0% |
| ! | ATAAAATAAACGTGACATCT+AGG | - | chr6_2:59758906-59758925 | None:intergenic | 25.0% |
| ! | TGATGGTATCTAAATTCAAA+AGG | - | chr6_2:59759209-59759228 | None:intergenic | 25.0% |
| ! | GTTTCTAAGAGATTCGTAAT+CGG | - | chr6_2:59756130-59756149 | None:intergenic | 30.0% |
| !! | AGCTGACACTATTTTTCAAA+CGG | - | chr6_2:59756482-59756501 | None:intergenic | 30.0% |
| CAAACAGAGACAAGAAAATT+AGG | - | chr6_2:59756539-59756558 | None:intergenic | 30.0% | |
| GTCTTTGCATTAGCATATTA+AGG | + | chr6_2:59756623-59756642 | Msa0921980:intron | 30.0% | |
| ! | TAGCATATTAAGGGTATGTT+TGG | + | chr6_2:59756633-59756652 | Msa0921980:intron | 30.0% |
| ! | ATATTAAGGGTATGTTTGGT+TGG | + | chr6_2:59756637-59756656 | Msa0921980:intron | 30.0% |
| TATCAAATTATTAGCGGTGA+CGG | - | chr6_2:59756787-59756806 | None:intergenic | 30.0% | |
| TTCAATGTAATCGCAAGTAT+CGG | - | chr6_2:59757001-59757020 | None:intergenic | 30.0% | |
| TAAACTCTTAAGTCCTGTTT+GGG | - | chr6_2:59757156-59757175 | None:intergenic | 30.0% | |
| !!! | AACCTTTTTTTGTTGTTGCA+TGG | + | chr6_2:59757372-59757391 | Msa0921980:intron | 30.0% |
| !!! | ACCTTTTTTTGTTGTTGCAT+GGG | + | chr6_2:59757373-59757392 | Msa0921980:intron | 30.0% |
| ACTGAATTACGTTACAGAAA+AGG | + | chr6_2:59757430-59757449 | Msa0921980:intron | 30.0% | |
| AAAAGGTAACTGCAGAAAAT+GGG | + | chr6_2:59757447-59757466 | Msa0921980:CDS | 30.0% | |
| TTGTAACTACTGATGAGAAA+AGG | + | chr6_2:59757492-59757511 | Msa0921980:CDS | 30.0% | |
| ! | AGTATCTACAATCCAGTTTT+GGG | + | chr6_2:59757614-59757633 | Msa0921980:CDS | 30.0% |
| !! | AATGTCTAAGTTTGTTACTG+GGG | + | chr6_2:59757737-59757756 | Msa0921980:intron | 30.0% |
| !!! | AACTGCTATTTTCTGAAATC+CGG | + | chr6_2:59758045-59758064 | Msa0921980:intron | 30.0% |
| TACATTGATGTTATCAATGC+CGG | - | chr6_2:59758067-59758086 | None:intergenic | 30.0% | |
| AATCGTAAAGAGTCTATTAC+AGG | - | chr6_2:59758101-59758120 | None:intergenic | 30.0% | |
| !!! | GACTAGCTTGTTTTTTCAAA+AGG | - | chr6_2:59758189-59758208 | None:intergenic | 30.0% |
| GCAATGAAAAACATAAATGC+AGG | + | chr6_2:59758289-59758308 | Msa0921980:intron | 30.0% | |
| AGTCTCAGAAATGTTTATGT+CGG | - | chr6_2:59758612-59758631 | None:intergenic | 30.0% | |
| !! | TAAACATTTCTGAGACTGTT+TGG | + | chr6_2:59758615-59758634 | Msa0921980:intron | 30.0% |
| !! | AAACATTTCTGAGACTGTTT+GGG | + | chr6_2:59758616-59758635 | Msa0921980:intron | 30.0% |
| TTGATCTGTTTACACTGTTT+AGG | - | chr6_2:59758841-59758860 | None:intergenic | 30.0% | |
| ATATATTCAAAGAGAGAGCA+TGG | + | chr6_2:59758956-59758975 | Msa0921980:intron | 30.0% | |
| TTATCTTTCTGATGCAGAAA+TGG | + | chr6_2:59759073-59759092 | Msa0921980:intron | 30.0% | |
| AGAAAGGAATAAGACCTTAT+TGG | + | chr6_2:59759144-59759163 | Msa0921980:CDS | 30.0% | |
| TACCTGTTACATATCCAATA+AGG | - | chr6_2:59759161-59759180 | None:intergenic | 30.0% | |
| CATTTATGTCTGCATATTGA+TGG | - | chr6_2:59759226-59759245 | None:intergenic | 30.0% | |
| ATTGAGCTGCATATCAATTA+AGG | - | chr6_2:59759313-59759332 | None:intergenic | 30.0% | |
| TTGATGAATGATTGAAGGCT+AGG | + | chr6_2:59756259-59756278 | Msa0921980:intron | 35.0% | |
| !! | GTACGTTGTTGTTTCTTAGT+TGG | - | chr6_2:59756339-59756358 | None:intergenic | 35.0% |
| AACAACGTACACCTGTTAAA+AGG | + | chr6_2:59756349-59756368 | Msa0921980:CDS | 35.0% | |
| ACAACGTACACCTGTTAAAA+GGG | + | chr6_2:59756350-59756369 | Msa0921980:CDS | 35.0% | |
| ACACCTGTTAAAAGGGTTTA+TGG | + | chr6_2:59756357-59756376 | Msa0921980:CDS | 35.0% | |
| ! | AGACCATAAACCCTTTTAAC+AGG | - | chr6_2:59756363-59756382 | None:intergenic | 35.0% |
| !!! | AAAACCTTGTTTTGGCGTAA+TGG | - | chr6_2:59756508-59756527 | None:intergenic | 35.0% |
| CTAAACTCTTAAGTCCTGTT+TGG | - | chr6_2:59757157-59757176 | None:intergenic | 35.0% | |
| ATACTAAGAAACAGGTTTGG+AGG | - | chr6_2:59757214-59757233 | None:intergenic | 35.0% | |
| ACCAATGTGGAAAAATAGTG+TGG | - | chr6_2:59757238-59757257 | None:intergenic | 35.0% | |
| CTTGAAAACTTGAACCAATG+TGG | - | chr6_2:59757251-59757270 | None:intergenic | 35.0% | |
| !!! | CACATTGGTTCAAGTTTTCA+AGG | + | chr6_2:59757249-59757268 | Msa0921980:intron | 35.0% |
| TCCCATGCAACAACAAAAAA+AGG | - | chr6_2:59757377-59757396 | None:intergenic | 35.0% | |
| !! | TGTTTTTCTGTGAGTTCTGA+TGG | + | chr6_2:59757404-59757423 | Msa0921980:intron | 35.0% |
| GAAAAGGTAACTGCAGAAAA+TGG | + | chr6_2:59757446-59757465 | Msa0921980:intron | 35.0% | |
| AAAGGTAACTGCAGAAAATG+GGG | + | chr6_2:59757448-59757467 | Msa0921980:CDS | 35.0% | |
| AGAAAATGCTCTACATCCTT+CGG | - | chr6_2:59757548-59757567 | None:intergenic | 35.0% | |
| ! | CAGTATCTACAATCCAGTTT+TGG | + | chr6_2:59757613-59757632 | Msa0921980:CDS | 35.0% |
| ! | GTATCTACAATCCAGTTTTG+GGG | + | chr6_2:59757615-59757634 | Msa0921980:CDS | 35.0% |
| !!! | TTTTGGGACCAAAGAATACT+AGG | - | chr6_2:59757719-59757738 | None:intergenic | 35.0% |
| !! | ATGTCTAAGTTTGTTACTGG+GGG | + | chr6_2:59757738-59757757 | Msa0921980:intron | 35.0% |
| ! | TTGTTACACGATACGCTTTT+TGG | + | chr6_2:59757879-59757898 | Msa0921980:intron | 35.0% |
| AAGAAGATTGCAAGAGATGT+GGG | + | chr6_2:59758331-59758350 | Msa0921980:CDS | 35.0% | |
| ! | GATGTGAATGAACCTTGTTT+AGG | + | chr6_2:59758360-59758379 | Msa0921980:CDS | 35.0% |
| TGTAAGCTTAAAACAGCTTG+TGG | - | chr6_2:59758679-59758698 | None:intergenic | 35.0% | |
| TTACACTGTTTAGGTGACTT+TGG | - | chr6_2:59758832-59758851 | None:intergenic | 35.0% | |
| CTTTCTCTTCTATGCAATGT+GGG | - | chr6_2:59759130-59759149 | None:intergenic | 35.0% | |
| GACCTTATTGGATATGTAAC+AGG | + | chr6_2:59759156-59759175 | Msa0921980:CDS | 35.0% | |
| AAGGCTAGGTTAGAATCTCT+GGG | + | chr6_2:59756273-59756292 | Msa0921980:intron | 40.0% | |
| TATGTTTGGTTGGAGTTGGA+GGG | + | chr6_2:59756647-59756666 | Msa0921980:intron | 40.0% | |
| GGCATACTAAGAAACAGGTT+TGG | - | chr6_2:59757217-59757236 | None:intergenic | 40.0% | |
| AGTGTGGCATACTAAGAAAC+AGG | - | chr6_2:59757222-59757241 | None:intergenic | 40.0% | |
| !! | GCCACACTATTTTTCCACAT+TGG | + | chr6_2:59757234-59757253 | Msa0921980:intron | 40.0% |
| GAAAATGCTCTACATCCTTC+GGG | - | chr6_2:59757547-59757566 | None:intergenic | 40.0% | |
| TTTCAGAAGAGATTTCTGCG+CGG | + | chr6_2:59757567-59757586 | Msa0921980:CDS | 40.0% | |
| AGAATATGGACCTGCAAAAG+TGG | - | chr6_2:59757649-59757668 | None:intergenic | 40.0% | |
| GGTAAGAGAGCAAGAGAATA+TGG | - | chr6_2:59757663-59757682 | None:intergenic | 40.0% | |
| TGTCAAATAGAGGCTATAGC+AGG | + | chr6_2:59757912-59757931 | Msa0921980:intron | 40.0% | |
| GTCAAATAGAGGCTATAGCA+GGG | + | chr6_2:59757913-59757932 | Msa0921980:intron | 40.0% | |
| TGCGTGTGTATGTATGTATG+TGG | + | chr6_2:59758248-59758267 | Msa0921980:intron | 40.0% | |
| TGCAGGCAAAAGAAATTGTG+CGG | + | chr6_2:59758306-59758325 | Msa0921980:intron | 40.0% | |
| GAAGAAGATTGCAAGAGATG+TGG | + | chr6_2:59758330-59758349 | Msa0921980:CDS | 40.0% | |
| TCTCTGATCTAACAGATTCG+CGG | + | chr6_2:59758427-59758446 | Msa0921980:intron | 40.0% | |
| TCTTTCTGATGCAGAAATGG+AGG | + | chr6_2:59759076-59759095 | Msa0921980:intron | 40.0% | |
| CCTTTCTCTTCTATGCAATG+TGG | - | chr6_2:59759131-59759150 | None:intergenic | 40.0% | |
| CCACATTGCATAGAAGAGAA+AGG | + | chr6_2:59759128-59759147 | Msa0921980:CDS | 40.0% | |
| TATGCAGCTCAATATGCATG+AGG | + | chr6_2:59759320-59759339 | Msa0921980:intron | 40.0% | |
| GAAGGCTAGGTTAGAATCTC+TGG | + | chr6_2:59756272-59756291 | Msa0921980:intron | 45.0% | |
| ! | CATCCTTGATTCGCTGAGAT+CGG | - | chr6_2:59756398-59756417 | None:intergenic | 45.0% |
| TACGCCATTACGCCAAAACA+AGG | + | chr6_2:59756501-59756520 | Msa0921980:CDS | 45.0% | |
| AGGGTATGTTTGGTTGGAGT+TGG | + | chr6_2:59756643-59756662 | Msa0921980:intron | 45.0% | |
| GTATGTTTGGTTGGAGTTGG+AGG | + | chr6_2:59756646-59756665 | Msa0921980:intron | 45.0% | |
| TTGGAGTTGGAGGGTTTAGT+TGG | + | chr6_2:59756656-59756675 | Msa0921980:intron | 45.0% | |
| TGGAGTTGGAGGGTTTAGTT+GGG | + | chr6_2:59756657-59756676 | Msa0921980:intron | 45.0% | |
| GATGAAGCACAAACACTCCT+CGG | - | chr6_2:59756897-59756916 | None:intergenic | 45.0% | |
| !! | GTAATCGCAAGTATCGGTGT+CGG | - | chr6_2:59756995-59757014 | None:intergenic | 45.0% |
| !!! | GTTTGGGTTGAGGTTTTGGA+GGG | - | chr6_2:59757140-59757159 | None:intergenic | 45.0% |
| !!! | TGTTTGGGTTGAGGTTTTGG+AGG | - | chr6_2:59757141-59757160 | None:intergenic | 45.0% |
| TCCAAAACCTCAACCCAAAC+AGG | + | chr6_2:59757140-59757159 | Msa0921980:intron | 45.0% | |
| !!! | TCCTGTTTGGGTTGAGGTTT+TGG | - | chr6_2:59757144-59757163 | None:intergenic | 45.0% |
| !! | CTTAAGTCCTGTTTGGGTTG+AGG | - | chr6_2:59757150-59757169 | None:intergenic | 45.0% |
| TGCAGAAAATGGGGAAGAAG+AGG | + | chr6_2:59757457-59757476 | Msa0921980:CDS | 45.0% | |
| ! | TTCGGGTTCAGTTCAATGAG+AGG | - | chr6_2:59757530-59757549 | None:intergenic | 45.0% |
| TCTCATTGAACTGAACCCGA+AGG | + | chr6_2:59757529-59757548 | Msa0921980:CDS | 45.0% | |
| !! | AGTTTGTTACTGGGGGTAGA+AGG | + | chr6_2:59757745-59757764 | Msa0921980:intron | 45.0% |
| GCAGGCAAAAGAAATTGTGC+GGG | + | chr6_2:59758307-59758326 | Msa0921980:intron | 45.0% | |
| CAGGCAAAAGAAATTGTGCG+GGG | + | chr6_2:59758308-59758327 | Msa0921980:intron | 45.0% | |
| ATTCGCGGCATATTCGTAAC+AGG | + | chr6_2:59758442-59758461 | Msa0921980:intron | 45.0% | |
| ! | TTTTTGTCGAGCCTGTCTCA+AGG | + | chr6_2:59758504-59758523 | Msa0921980:intron | 45.0% |
| ACCATAACGAACCTTGAGAC+AGG | - | chr6_2:59758518-59758537 | None:intergenic | 45.0% | |
| CTCAAGGTTCGTTATGGTGA+AGG | + | chr6_2:59758520-59758539 | Msa0921980:intron | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr6_2:59758627-59758646 | Msa0921980:intron | 45.0% | |
| TAGGTGACTTTGGCCCAATT+TGG | - | chr6_2:59758822-59758841 | None:intergenic | 45.0% | |
| TTCTGATGCAGAAATGGAGG+AGG | + | chr6_2:59759079-59759098 | Msa0921980:intron | 45.0% | |
| AAACGAAAGATGTCGCCAAC+TGG | + | chr6_2:59759343-59759362 | Msa0921980:CDS | 45.0% | |
| AACGAAAGATGTCGCCAACT+GGG | + | chr6_2:59759344-59759363 | Msa0921980:CDS | 45.0% | |
| GTGTGTATTGCAATCCCAGT+TGG | - | chr6_2:59759361-59759380 | None:intergenic | 45.0% | |
| !! | AAAAAAAATAAAAAAAAATG+GGG | + | chr6_2:59756076-59756095 | Msa0921980:exon | 5.0% |
| CGCTCGCATGTCAGAAAACA+AGG | + | chr6_2:59756149-59756168 | Msa0921980:CDS | 50.0% | |
| CGAATCAAGGATGTTTCCGC+CGG | + | chr6_2:59756405-59756424 | Msa0921980:CDS | 50.0% | |
| AAACGGTAAGATCGTCGCTG+AGG | - | chr6_2:59756465-59756484 | None:intergenic | 50.0% | |
| GGAGTTGGAGGGTTTAGTTG+GGG | + | chr6_2:59756658-59756677 | Msa0921980:intron | 50.0% | |
| TTGGAGGGTTTAGTTGGGGA+AGG | + | chr6_2:59756662-59756681 | Msa0921980:intron | 50.0% | |
| TGGAGGGTTTAGTTGGGGAA+GGG | + | chr6_2:59756663-59756682 | Msa0921980:intron | 50.0% | |
| CATCGACGTGTGTCTATCAC+CGG | + | chr6_2:59756859-59756878 | Msa0921980:intron | 50.0% | |
| ATCGACGTGTGTCTATCACC+GGG | + | chr6_2:59756860-59756879 | Msa0921980:intron | 50.0% | |
| GCACAAACACTCCTCGGATT+AGG | - | chr6_2:59756891-59756910 | None:intergenic | 50.0% | |
| ACACGACACATGTCGGACAT+CGG | - | chr6_2:59756972-59756991 | None:intergenic | 50.0% | |
| ! | TCAATGAGAGGTGCATTCGC+AGG | - | chr6_2:59757518-59757537 | None:intergenic | 50.0% |
| TGGCAGCATATCCCCAAAAC+TGG | - | chr6_2:59757629-59757648 | None:intergenic | 50.0% | |
| !!! | GGATATGCTGCCACTTTTGC+AGG | + | chr6_2:59757636-59757655 | Msa0921980:CDS | 50.0% |
| ! | TCAGCGTGTCACTCAAGCAA+TGG | + | chr6_2:59758478-59758497 | Msa0921980:intron | 50.0% |
| GCCTGTCTCAAGGTTCGTTA+TGG | + | chr6_2:59758514-59758533 | Msa0921980:intron | 50.0% | |
| AGGTGCGAGAGAACAAGGAA+TGG | + | chr6_2:59759099-59759118 | Msa0921980:CDS | 50.0% | |
| GGTAAGATCGTCGCTGAGGA+AGG | - | chr6_2:59756461-59756480 | None:intergenic | 55.0% | |
| AGGGTTTAGTTGGGGAAGGG+AGG | + | chr6_2:59756666-59756685 | Msa0921980:intron | 55.0% | |
| GGGTTTAGTTGGGGAAGGGA+GGG | + | chr6_2:59756667-59756686 | Msa0921980:intron | 55.0% | |
| ! | TGTGGGTGTCGTGTCGATGT+CGG | + | chr6_2:59756835-59756854 | Msa0921980:intron | 55.0% |
| CACGACACATGTCGGACATC+GGG | - | chr6_2:59756971-59756990 | None:intergenic | 55.0% | |
| GTGTCGGACACGACACATGT+CGG | - | chr6_2:59756979-59756998 | None:intergenic | 55.0% | |
| ATTCGCTGAGATCGGCGCAC+TGG | - | chr6_2:59756390-59756409 | None:intergenic | 60.0% | |
| ! | GCGCCGATCTCAGCGAATCA+AGG | + | chr6_2:59756392-59756411 | Msa0921980:CDS | 60.0% |
| TGCCGCGGCAGTAACAGTAC+CGG | - | chr6_2:59756427-59756446 | None:intergenic | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | - | chr6_2:59756881-59756900 | None:intergenic | 60.0% |
| CGCTGCGATAGCAAGGGTAG+AGG | + | chr6_2:59757590-59757609 | Msa0921980:CDS | 60.0% | |
| ! | GGAGGAGGTGCGAGAGAACA+AGG | + | chr6_2:59759094-59759113 | Msa0921980:CDS | 60.0% |
| ! | CGCGGCAGTAACAGTACCGG+CGG | - | chr6_2:59756424-59756443 | None:intergenic | 65.0% |
| CGCCGGTACTGTTACTGCCG+CGG | + | chr6_2:59756422-59756441 | Msa0921980:CDS | 65.0% | |
| ! | AAGGTCGTCGAGCGTTGCCG+CGG | - | chr6_2:59756442-59756461 | None:intergenic | 65.0% |
| ACCGGGACACGCCTAATCCG+AGG | + | chr6_2:59756877-59756896 | Msa0921980:intron | 65.0% | |
| TGCGCGGCGCTGCGATAGCA+AGG | + | chr6_2:59757583-59757602 | Msa0921980:CDS | 70.0% | |
| GCGCGGCGCTGCGATAGCAA+GGG | + | chr6_2:59757584-59757603 | Msa0921980:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 59756021 | 59759381 | 59756021 | ID=Msa0921980;Name=Msa0921980 |
| chr6_2 | mRNA | 59756021 | 59759381 | 59756021 | ID=Msa0921980-mRNA-1;Parent=Msa0921980;Name=Msa0921980-mRNA-1;_AED=0.11;_eAED=0.11;_QI=72|0.8|0.83|1|1|0.83|6|0|250 |
| chr6_2 | exon | 59756021 | 59756170 | 59756021 | ID=Msa0921980-mRNA-1:exon:9124;Parent=Msa0921980-mRNA-1 |
| chr6_2 | exon | 59756276 | 59756522 | 59756276 | ID=Msa0921980-mRNA-1:exon:9125;Parent=Msa0921980-mRNA-1 |
| chr6_2 | exon | 59757447 | 59757657 | 59757447 | ID=Msa0921980-mRNA-1:exon:9126;Parent=Msa0921980-mRNA-1 |
| chr6_2 | exon | 59758311 | 59758381 | 59758311 | ID=Msa0921980-mRNA-1:exon:9127;Parent=Msa0921980-mRNA-1 |
| chr6_2 | exon | 59759090 | 59759177 | 59759090 | ID=Msa0921980-mRNA-1:exon:9128;Parent=Msa0921980-mRNA-1 |
| chr6_2 | exon | 59759327 | 59759381 | 59759327 | ID=Msa0921980-mRNA-1:exon:9129;Parent=Msa0921980-mRNA-1 |
| chr6_2 | five_prime_UTR | 59756021 | 59756092 | 59756021 | ID=Msa0921980-mRNA-1:five_prime_utr;Parent=Msa0921980-mRNA-1 |
| chr6_2 | CDS | 59756093 | 59756170 | 59756093 | ID=Msa0921980-mRNA-1:cds;Parent=Msa0921980-mRNA-1 |
| chr6_2 | CDS | 59756276 | 59756522 | 59756276 | ID=Msa0921980-mRNA-1:cds;Parent=Msa0921980-mRNA-1 |
| chr6_2 | CDS | 59757447 | 59757657 | 59757447 | ID=Msa0921980-mRNA-1:cds;Parent=Msa0921980-mRNA-1 |
| chr6_2 | CDS | 59758311 | 59758381 | 59758311 | ID=Msa0921980-mRNA-1:cds;Parent=Msa0921980-mRNA-1 |
| chr6_2 | CDS | 59759090 | 59759177 | 59759090 | ID=Msa0921980-mRNA-1:cds;Parent=Msa0921980-mRNA-1 |
| chr6_2 | CDS | 59759327 | 59759381 | 59759327 | ID=Msa0921980-mRNA-1:cds;Parent=Msa0921980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
