AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373500 MtrunA17_Chr3g0122911 97.565 616 15 0 1 616 1 616 0.0 1236
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373500 AT1G67630.1 59.585 626 231 12 3 616 5 620 0.0 741

Find 165 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAATTAACGCTTCAATTT+TGG 0.120706 3_1:-72543596 Msa0373500:CDS
ACCTTTGTTGGTTAAGAATA+TGG 0.169825 3_1:+72544276 None:intergenic
ACAGTTCCTTTCTTGATGTC+TGG 0.222575 3_1:+72545253 None:intergenic
GGAAGATTATGTAGAAAGTA+TGG 0.230887 3_1:-72545093 Msa0373500:CDS
TCCCCTTTGGCTAATCTTCC+CGG 0.246702 3_1:+72543664 None:intergenic
GGCTAATCTTCCCGGATTTA+CGG 0.274662 3_1:+72543672 None:intergenic
ACCATACCTGACGTAGAAAA+TGG 0.283304 3_1:-72547655 Msa0373500:CDS
TTGCCTAGTTGCATCTAAAT+TGG 0.287998 3_1:-72545979 Msa0373500:CDS
GGGAAGCTTATTATCTTAAC+AGG 0.298972 3_1:-72549741 Msa0373500:intron
CAGTTCCTTTCTTGATGTCT+GGG 0.299498 3_1:+72545254 None:intergenic
GATAACAATATTACCTTTGT+TGG 0.312625 3_1:+72544264 None:intergenic
AAATTGTCTGTTGTAGTAAA+AGG 0.318473 3_1:+72545502 None:intergenic
TTCTCCTTGTACCATGTATA+CGG 0.328335 3_1:-72545055 Msa0373500:CDS
GATATTATTAAGGAGGAAAC+TGG 0.336739 3_1:-72549449 Msa0373500:CDS
TCTTGATAGGTAGTTGGAAT+TGG 0.343246 3_1:-72546023 Msa0373500:intron
AGATGTTCATTGGTGATTCA+TGG 0.343466 3_1:-72547559 Msa0373500:CDS
TCATTTGCCTCGAAGATTCC+AGG 0.346489 3_1:+72544754 None:intergenic
ACGATTATTCGTTGGTGTGC+TGG 0.356878 3_1:+72547810 None:intergenic
CTCAACAGTATTGAGCATTC+TGG 0.364573 3_1:-72546191 Msa0373500:intron
CGTGAAAGAAGATATTATTA+AGG 0.381172 3_1:-72549459 Msa0373500:CDS
TCAATAGCTTGCTTCTTTGA+AGG 0.383809 3_1:+72545915 None:intergenic
ATCTGGAAAGCCGGCTGATC+TGG 0.384813 3_1:-72547731 Msa0373500:CDS
GAAATGCATTGCCGTAAATC+CGG 0.385667 3_1:-72543683 Msa0373500:CDS
AATTGTACAAAATGCTGAAA+TGG 0.396052 3_1:-72549510 Msa0373500:CDS
ATGAATCTGCAACCTGGTTT+CGG 0.400151 3_1:+72547529 None:intergenic
CATGATACACCATCTTTGTA+TGG 0.412009 3_1:-72547766 Msa0373500:CDS
GACCAGGGAAAACTGAATAA+TGG 0.412886 3_1:+72546132 None:intergenic
TTGAGGTTGCCGAATGAAAA+TGG 0.413349 3_1:+72550031 None:intergenic
ACCTACTTGCTTTCGAAACT+CGG 0.416574 3_1:-72543531 Msa0373500:three_prime_UTR
GGCAATGCATTTCATGCTGT+TGG 0.417412 3_1:+72543693 None:intergenic
AGTGCCTCCGCCTTCCCCTT+TGG 0.417625 3_1:+72543651 None:intergenic
GGGTGTTCAGAATCAATAAA+TGG 0.419793 3_1:+72545274 None:intergenic
ACCACCACAGTTGCTTGTAT+TGG 0.422824 3_1:-72545434 Msa0373500:intron
GAAGGTAAGATAAGAACATC+TGG 0.423937 3_1:+72544081 None:intergenic
GCAAGAGCACTTGTAGCCTC+TGG 0.425289 3_1:-72547374 Msa0373500:CDS
TTCTTCTTCGAAATCGAACC+TGG 0.428052 3_1:+72549929 None:intergenic
TGAGCCTCTTGTAGAACTGC+TGG 0.428718 3_1:-72545473 Msa0373500:CDS
GTTGCAGATTCATGTATGAT+AGG 0.430713 3_1:-72547519 Msa0373500:CDS
TCATTGGTGATTCATGGATC+AGG 0.431928 3_1:-72547553 Msa0373500:CDS
CTTCCGATCTCGTCTCAAGC+TGG 0.441376 3_1:-72549762 Msa0373500:CDS
CTGGAACCAGTGATAGTTGA+AGG 0.442918 3_1:+72544100 None:intergenic
CGATTATTCGTTGGTGTGCT+GGG 0.444015 3_1:+72547811 None:intergenic
AGTCTGTCATGTTGCAGAGC+AGG 0.444572 3_1:-72547043 Msa0373500:intron
TGCAACTAGGCAATGCCCAC+TGG 0.447205 3_1:+72545989 None:intergenic
AAAGATGGTGTATCATGTAT+AGG 0.449011 3_1:+72547772 None:intergenic
CCTAGTTGCATCTAAATTGG+TGG 0.449877 3_1:-72545976 Msa0373500:CDS
TATCAGTCAACCTCAGGTTC+AGG 0.450068 3_1:-72544902 Msa0373500:intron
AGTGATAGTTGAAGGGCTTC+TGG 0.456035 3_1:+72544108 None:intergenic
GCTTCATCTTGATAGGTAGT+TGG 0.458139 3_1:-72546029 Msa0373500:intron
TTTGTAGAACTTGATTATAG+TGG 0.460358 3_1:-72543628 Msa0373500:CDS
ATAGCCAGTCTCACTAATCC+TGG 0.463280 3_1:-72544772 Msa0373500:CDS
GTATGATAGGACTGAGGATA+AGG 0.465764 3_1:-72547506 Msa0373500:intron
TGTTTCTTACTCACCTGACC+AGG 0.466872 3_1:+72546116 None:intergenic
TGAAGGATTCAAATCCTCCT+TGG 0.470306 3_1:+72545932 None:intergenic
TTGTAGAACTTGATTATAGT+GGG 0.473340 3_1:-72543627 Msa0373500:CDS
CAAAGTTGGTTGCTGCACTT+TGG 0.478945 3_1:-72544384 Msa0373500:CDS
AAGTCTACTCAAGCGATCAA+TGG 0.478977 3_1:+72544304 None:intergenic
AAAGAAGCAAGCTATTGATA+AGG 0.484721 3_1:-72545910 Msa0373500:CDS
TTCCGATCTCGTCTCAAGCT+GGG 0.494489 3_1:-72549761 Msa0373500:CDS
ACCGGCGGAAAGTGTTCCCT+TGG 0.495193 3_1:-72544145 Msa0373500:CDS
GAATAATCAAAATCTTCAAA+TGG 0.497969 3_1:+72543573 None:intergenic
AGTCTACTCAAGCGATCAAT+GGG 0.502076 3_1:+72544305 None:intergenic
TCAAGAAAGGAACTGTGGAC+AGG 0.503637 3_1:-72545246 Msa0373500:CDS
CACTAATCCTGGAATCTTCG+AGG 0.503927 3_1:-72544761 Msa0373500:CDS
TGATTACAAAGCAGTTCAGT+TGG 0.504508 3_1:+72545879 None:intergenic
TGATAGGTAGTTGGAATTGG+AGG 0.506513 3_1:-72546020 Msa0373500:intron
ATTGGGTTTCAGGTCAAAGT+TGG 0.506776 3_1:-72544398 Msa0373500:intron
AAATGCATTGCCGTAAATCC+GGG 0.513156 3_1:-72543682 Msa0373500:CDS
CTTTCCGCCGGTGGATAAAG+TGG 0.513297 3_1:+72544156 None:intergenic
AGATTGATGCTATAGAAAAC+CGG 0.517344 3_1:-72547409 Msa0373500:CDS
CTCACCGGTGAGGCAATTGA+AGG 0.519073 3_1:+72547329 None:intergenic
ATTTGATATCAGTCAACCTC+AGG 0.519886 3_1:-72544908 Msa0373500:CDS
GATTCCAGGATTAGTGAGAC+TGG 0.520895 3_1:+72544768 None:intergenic
GGCTTAAACGTTGCAAGTCA+AGG 0.521145 3_1:+72546153 None:intergenic
AGACCCTTCAATTGCCTCAC+CGG 0.521579 3_1:-72547333 Msa0373500:intron
AAAATATTTCCATACAAAGA+TGG 0.522271 3_1:+72547757 None:intergenic
CCACCAATTTAGATGCAACT+AGG 0.524122 3_1:+72545976 None:intergenic
TTTCTATCCACTTTATCCAC+CGG 0.527556 3_1:-72544163 Msa0373500:CDS
CATGGATCAGGGCCGAAACC+AGG 0.528621 3_1:-72547541 Msa0373500:CDS
ATCCGGGAAGATTAGCCAAA+GGG 0.530400 3_1:-72543666 Msa0373500:CDS
TACAAAATGCTGAAATGGAA+GGG 0.533300 3_1:-72549505 Msa0373500:CDS
GAAGATTATGTAGAAAGTAT+GGG 0.533403 3_1:-72545092 Msa0373500:CDS
AGAAGCCCTTCAACTATCAC+TGG 0.534874 3_1:-72544106 Msa0373500:CDS
AATCAGAATTCAAGAAAGCC+AGG 0.535673 3_1:-72549947 Msa0373500:CDS
GGTTTGCATCTTTATTCCAT+CGG 0.535724 3_1:-72549428 Msa0373500:CDS
GTACAAAATGCTGAAATGGA+AGG 0.538126 3_1:-72549506 Msa0373500:CDS
CAAGAGCACTTGTAGCCTCT+GGG 0.540735 3_1:-72547373 Msa0373500:CDS
CATTGGTGATTCATGGATCA+GGG 0.542239 3_1:-72547552 Msa0373500:CDS
TGGTTAGCATCCCGTATACA+TGG 0.545931 3_1:+72545044 None:intergenic
CAGCTTGAGACGAGATCGGA+AGG 0.546989 3_1:+72549763 None:intergenic
TTACCTTGACAAAGTACTTG+AGG 0.548405 3_1:+72544055 None:intergenic
TCTAGGGTTTCTCTGAGTTG+AGG 0.548522 3_1:+72550014 None:intergenic
ACATCTTGACGATTATTCGT+TGG 0.552885 3_1:+72547802 None:intergenic
CAAGAAAGGAACTGTGGACA+GGG 0.552995 3_1:-72545245 Msa0373500:CDS
GCTTAACAGATTATTGCGGC+TGG 0.557278 3_1:-72545526 Msa0373500:intron
GCAACTAGGCAATGCCCACT+GGG 0.559407 3_1:+72545990 None:intergenic
TTACATTTCTACATCTCCGA+TGG 0.560768 3_1:+72549412 None:intergenic
GAGGCAATTGAAGGGTCTGT+TGG 0.561516 3_1:+72547338 None:intergenic
GATAGGTAGTTGGAATTGGA+GGG 0.567631 3_1:-72546019 Msa0373500:intron
ACAAAGTACTTGAGGTCTGA+AGG 0.568129 3_1:+72544063 None:intergenic
GAAAGAAGATATTATTAAGG+AGG 0.568304 3_1:-72549456 Msa0373500:CDS
GCTTGAGACGAGATCGGAAG+GGG 0.570414 3_1:+72549765 None:intergenic
AAGGGTGTAACCAGATCAGC+CGG 0.571145 3_1:+72547721 None:intergenic
GTAGAACTTGATTATAGTGG+GGG 0.572295 3_1:-72543625 Msa0373500:CDS
GGAAGATTAGCCAAAGGGGA+AGG 0.572359 3_1:-72543661 Msa0373500:CDS
CCTACTTGCTTTCGAAACTC+GGG 0.573006 3_1:-72543530 Msa0373500:three_prime_UTR
GAACACCCAGACATCAAGAA+AGG 0.575115 3_1:-72545259 Msa0373500:CDS
GGTGATATTTGACAGACAGC+TGG 0.575422 3_1:-72549540 Msa0373500:intron
GGGCAGGTTCTTGATAATGA+AGG 0.576740 3_1:-72543724 Msa0373500:intron
ACCATATTCTTAACCAACAA+AGG 0.577604 3_1:-72544277 Msa0373500:intron
AAGGGAACACTTTCCGCCGG+TGG 0.577945 3_1:+72544147 None:intergenic
CAAATCCTCCTTGGCAACAG+AGG 0.580356 3_1:+72545941 None:intergenic
TTAGCCAAAGGGGAAGGCGG+AGG 0.582827 3_1:-72543655 Msa0373500:CDS
TAATCAGAGAGAGTTATCAA+TGG 0.583256 3_1:-72545862 Msa0373500:intron
TATACCTACCTCTGTTGCCA+AGG 0.585658 3_1:-72545949 Msa0373500:CDS
GGTTGCCGAATGAAAATGGC+GGG 0.587238 3_1:+72550035 None:intergenic
CATCCCGTATACATGGTACA+AGG 0.589860 3_1:+72545051 None:intergenic
TCGTTTGGAAGTCTTGAGGA+AGG 0.590862 3_1:-72545206 Msa0373500:intron
TCTCCTTGTACCATGTATAC+GGG 0.592545 3_1:-72545054 Msa0373500:CDS
ATGATTTGTTGTGACGGAGA+AGG 0.595013 3_1:-72547080 Msa0373500:CDS
TTCCCAGCTTGAGACGAGAT+CGG 0.595051 3_1:+72549759 None:intergenic
CTTAAATGATGATGATACAA+AGG 0.596367 3_1:-72547842 Msa0373500:CDS
TCCAAGGGAACACTTTCCGC+CGG 0.598815 3_1:+72544144 None:intergenic
AGACCTCAAGTACTTTGTCA+AGG 0.598942 3_1:-72544058 Msa0373500:intron
GATGTTCTCAAACAGATCAG+TGG 0.599730 3_1:-72544362 Msa0373500:CDS
AACAGTATTGAGCATTCTGG+AGG 0.602568 3_1:-72546188 Msa0373500:intron
TGGAATCTTCGAGGCAAATG+AGG 0.605385 3_1:-72544752 Msa0373500:intron
TGTAGAACTTGATTATAGTG+GGG 0.607197 3_1:-72543626 Msa0373500:CDS
GTTGGCATGATTTGTTGTGA+CGG 0.611041 3_1:-72547086 Msa0373500:CDS
TTGTGCTTAACAGATTATTG+CGG 0.613642 3_1:-72545530 Msa0373500:intron
AAAACGGACAGATAGGTTCG+CGG 0.616408 3_1:-72547695 Msa0373500:CDS
AATCATTATACCTGAACCTG+AGG 0.618102 3_1:+72544892 None:intergenic
CTATCCACTTTATCCACCGG+CGG 0.618588 3_1:-72544160 Msa0373500:CDS
TCATACATGAATCTGCAACC+TGG 0.619077 3_1:+72547523 None:intergenic
TATTTCGTTTGGAAGTCTTG+AGG 0.620552 3_1:-72545210 Msa0373500:CDS
AGATTAGCCAAAGGGGAAGG+CGG 0.622219 3_1:-72543658 Msa0373500:CDS
TCCTCCTTGGCAACAGAGGT+AGG 0.626834 3_1:+72545945 None:intergenic
GGTTGACTGATATCAAATGC+AGG 0.627114 3_1:+72544913 None:intergenic
TTAAGACATTGATATTACAA+AGG 0.628780 3_1:+72543505 None:intergenic
ACAGTATTGAGCATTCTGGA+GGG 0.629176 3_1:-72546187 Msa0373500:intron
TGGCGCCAGAGAAAAGTCCA+AGG 0.629197 3_1:+72544128 None:intergenic
TATGCCAGCAGTTCTACAAG+AGG 0.630430 3_1:+72545469 None:intergenic
TCACCGGTGAGGCAATTGAA+GGG 0.633226 3_1:+72547330 None:intergenic
TGGAACCAGTGATAGTTGAA+GGG 0.633289 3_1:+72544101 None:intergenic
GTCACAACAAATCATGCCAA+CGG 0.639149 3_1:+72547088 None:intergenic
ACCTACCTCTGTTGCCAAGG+AGG 0.641588 3_1:-72545946 Msa0373500:CDS
TGACAGACTTCTCATTAAGA+CGG 0.641870 3_1:+72547057 None:intergenic
AGCTTGAGACGAGATCGGAA+GGG 0.646335 3_1:+72549764 None:intergenic
GTTTCTTACTCACCTGACCA+GGG 0.649699 3_1:+72546117 None:intergenic
AATCCGGGAAGATTAGCCAA+AGG 0.655765 3_1:-72543667 Msa0373500:CDS
TTGGAGGGCATAATCCCAGT+GGG 0.659819 3_1:-72546004 Msa0373500:CDS
CCCGAGTTTCGAAAGCAAGT+AGG 0.661360 3_1:+72543530 None:intergenic
GGCGCCAGAGAAAAGTCCAA+GGG 0.665377 3_1:+72544129 None:intergenic
TCCGGGAAGATTAGCCAAAG+GGG 0.672422 3_1:-72543665 Msa0373500:CDS
CAGTATTGAGCATTCTGGAG+GGG 0.672798 3_1:-72546186 Msa0373500:CDS
ATTACCAATACAAGCAACTG+TGG 0.673094 3_1:+72545430 None:intergenic
ACCAATACAAGCAACTGTGG+TGG 0.685489 3_1:+72545433 None:intergenic
AGACATCAAGAAAGGAACTG+TGG 0.690973 3_1:-72545251 Msa0373500:CDS
ATGCATTAAACTCACCGGTG+AGG 0.691949 3_1:+72547319 None:intergenic
TCTCAAACAGATCAGTGGAG+AGG 0.700393 3_1:-72544357 Msa0373500:CDS
TGGTTCTTCATAGAGCCCAG+AGG 0.708216 3_1:+72547358 None:intergenic
ATTGGAGGGCATAATCCCAG+TGG 0.710140 3_1:-72546005 Msa0373500:CDS
ATTCATGTATGATAGGACTG+AGG 0.726348 3_1:-72547512 Msa0373500:CDS
AGGTTGCCGAATGAAAATGG+CGG 0.736955 3_1:+72550034 None:intergenic
TTAAACGTTGCAAGTCAAGG+CGG 0.749759 3_1:+72546156 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTTAATGAATAAATAAA+AGG + chr3_1:72544300-72544319 None:intergenic 10.0%
!!! TTTTTTAATTTTTTTCTTAC+TGG + chr3_1:72546896-72546915 None:intergenic 10.0%
!!! CATAAATTTGTTTTTTAATA+TGG - chr3_1:72547212-72547231 Msa0373500:intron 10.0%
!!! TTAATTGTTGCAAAATTTTT+AGG - chr3_1:72543615-72543634 Msa0373500:CDS 15.0%
!!! TTAACAAAATTTGTTTTTGT+TGG - chr3_1:72543845-72543864 Msa0373500:intron 15.0%
!! AAAACTAAAGTAAAAAGATA+AGG + chr3_1:72544430-72544449 None:intergenic 15.0%
!!! TTATCTTTTTACTTTAGTTT+TGG - chr3_1:72544429-72544448 Msa0373500:intron 15.0%
!! ATGTATGTATGAAAAATATA+TGG + chr3_1:72546433-72546452 None:intergenic 15.0%
!!! ATAATGATTTTAAAGCATTT+AGG - chr3_1:72548554-72548573 Msa0373500:intron 15.0%
!! AAGAAACAAATGATAATTAT+AGG - chr3_1:72548967-72548986 Msa0373500:intron 15.0%
!! AACATTTATAAATGATTTAC+TGG - chr3_1:72549687-72549706 Msa0373500:intron 15.0%
!! ACATTTATAAATGATTTACT+GGG - chr3_1:72549688-72549707 Msa0373500:intron 15.0%
!!! ATTTGAAGATTTTGATTATT+CGG - chr3_1:72549861-72549880 Msa0373500:intron 15.0%
!! TGATTGATTAATTAAGCAAA+AGG + chr3_1:72543561-72543580 None:intergenic 20.0%
!!! AATTTTTAGCGAATAAATAC+TGG - chr3_1:72543752-72543771 Msa0373500:intron 20.0%
!! GAAAATTTACGATTTGAATT+TGG - chr3_1:72543867-72543886 Msa0373500:intron 20.0%
!! ATGCATTTACATTTGAATTA+AGG - chr3_1:72544081-72544100 Msa0373500:CDS 20.0%
!! TTTATTGTTGTATCTGTTAA+TGG - chr3_1:72545486-72545505 Msa0373500:CDS 20.0%
!! AAAATATTTCCATACAAAGA+TGG + chr3_1:72545678-72545697 None:intergenic 20.0%
!! ATCAACAAACAAATGTAAAA+GGG + chr3_1:72545985-72546004 None:intergenic 20.0%
!! TATCAACAAACAAATGTAAA+AGG + chr3_1:72545986-72546005 None:intergenic 20.0%
!! TTTAACATATGCATTAATTC+TGG - chr3_1:72546235-72546254 Msa0373500:intron 20.0%
!!! TCAGTCTATTTAATTTGATT+AGG - chr3_1:72546582-72546601 Msa0373500:intron 20.0%
!! AATTAATGTTGCCTTAATAA+TGG - chr3_1:72546780-72546799 Msa0373500:intron 20.0%
!! TTAAGTAAGATCCATTATTA+AGG + chr3_1:72546794-72546813 None:intergenic 20.0%
!! ATTTCATGCTAAAAAATGTT+TGG + chr3_1:72547006-72547025 None:intergenic 20.0%
!!! TTCTTTTTAATCACAATTAG+TGG - chr3_1:72548051-72548070 Msa0373500:intron 20.0%
!!! TTTTGATGAAATATTTCGTT+TGG - chr3_1:72548211-72548230 Msa0373500:intron 20.0%
!! ATTTGCGTAAACTAAAATAA+TGG + chr3_1:72548459-72548478 None:intergenic 20.0%
!!! ATGTTGAAGGATATTTTTTT+AGG - chr3_1:72548893-72548912 Msa0373500:intron 20.0%
!! TTATAACCAAAAGTGAAAAT+AGG - chr3_1:72549539-72549558 Msa0373500:intron 20.0%
!!! AATTGAAGCGTTAATTTTAT+CGG + chr3_1:72549835-72549854 None:intergenic 20.0%
!!! TAAAATTAACGCTTCAATTT+TGG - chr3_1:72549836-72549855 Msa0373500:intron 20.0%
!! GAATAATCAAAATCTTCAAA+TGG + chr3_1:72549862-72549881 None:intergenic 20.0%
!!! TTTGAAGATTTTGATTATTC+GGG - chr3_1:72549862-72549881 Msa0373500:intron 20.0%
!! TTAAGACATTGATATTACAA+AGG + chr3_1:72549930-72549949 None:intergenic 20.0%
! ATTTACGATTTGAATTTGGA+CGG - chr3_1:72543871-72543890 Msa0373500:intron 25.0%
!! ATTTCAGCATTTTGTACAAT+TGG + chr3_1:72543923-72543942 None:intergenic 25.0%
! AATTGTACAAAATGCTGAAA+TGG - chr3_1:72543922-72543941 Msa0373500:intron 25.0%
! CGTGAAAGAAGATATTATTA+AGG - chr3_1:72543973-72543992 Msa0373500:intron 25.0%
! GAAAGAAGATATTATTAAGG+AGG - chr3_1:72543976-72543995 Msa0373500:intron 25.0%
! AAATGTGGAAGAAAATTATC+CGG - chr3_1:72544241-72544260 Msa0373500:intron 25.0%
! AGTAAAAAGATAAGGACTTA+GGG + chr3_1:72544422-72544441 None:intergenic 25.0%
! AAGTAAAAAGATAAGGACTT+AGG + chr3_1:72544423-72544442 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - chr3_1:72545031-72545050 Msa0373500:CDS 25.0%
!! GTTTCTCTAATAGTTTTCTT+AGG + chr3_1:72545156-72545175 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr3_1:72545173-72545192 Msa0373500:intron 25.0%
! AGATACTCTGTGTAAATATT+CGG + chr3_1:72545398-72545417 None:intergenic 25.0%
!! ATATAGTGTTGTTGAGTTAA+AGG - chr3_1:72545531-72545550 Msa0373500:intron 25.0%
!! CTTAAATGATGATGATACAA+AGG - chr3_1:72545590-72545609 Msa0373500:intron 25.0%
!!! TATGGAAATATTTTAGCATC+TGG - chr3_1:72545684-72545703 Msa0373500:intron 25.0%
!! ATGCATACTCATAATTTTGA+TGG - chr3_1:72546147-72546166 Msa0373500:CDS 25.0%
! AAGAGCCAATAAGTAAAATT+TGG + chr3_1:72546188-72546207 None:intergenic 25.0%
!!! AAATTTTACTTATTGGCTCT+TGG - chr3_1:72546187-72546206 Msa0373500:intron 25.0%
! TCTTATCAAATCCAACATAT+TGG + chr3_1:72546491-72546510 None:intergenic 25.0%
! TGTTTAGACAAATACTCTTT+AGG - chr3_1:72546513-72546532 Msa0373500:intron 25.0%
! ATGGATCACAGAATATATTA+TGG + chr3_1:72546630-72546649 None:intergenic 25.0%
! AACATTCCAAAGTAAAACAA+TGG + chr3_1:72546649-72546668 None:intergenic 25.0%
!!! TTTGGAATGTTGACTTATTT+AGG - chr3_1:72546658-72546677 Msa0373500:intron 25.0%
! AATGGATCTTACTTAAATCT+TGG - chr3_1:72546798-72546817 Msa0373500:intron 25.0%
! ATGGATCTTACTTAAATCTT+GGG - chr3_1:72546799-72546818 Msa0373500:intron 25.0%
!! TTGAAAATCAATTTTTCCAC+CGG - chr3_1:72547120-72547139 Msa0373500:intron 25.0%
! CACATTAGCAAACAAAAAAT+GGG + chr3_1:72547603-72547622 None:intergenic 25.0%
! ACACATTAGCAAACAAAAAA+TGG + chr3_1:72547604-72547623 None:intergenic 25.0%
! GCAAGTTCTTCAAATATTAT+CGG - chr3_1:72547825-72547844 Msa0373500:CDS 25.0%
! ACAGAAATACAGTATGTATA+GGG + chr3_1:72547856-72547875 None:intergenic 25.0%
! AACAGAAATACAGTATGTAT+AGG + chr3_1:72547857-72547876 None:intergenic 25.0%
! AAATTGTCTGTTGTAGTAAA+AGG + chr3_1:72547933-72547952 None:intergenic 25.0%
! TTAAAAAGAAAGATGTAGAC+TGG + chr3_1:72548041-72548060 None:intergenic 25.0%
!! GAAGATTATGTAGAAAGTAT+GGG - chr3_1:72548340-72548359 Msa0373500:intron 25.0%
! ATTTCATAACCATATGCTTA+TGG + chr3_1:72548800-72548819 None:intergenic 25.0%
! TATTGACAAATAAGAACTAG+AGG + chr3_1:72548842-72548861 None:intergenic 25.0%
!!! AAGTTTTTTGATCAAGGATT+GGG - chr3_1:72549017-72549036 Msa0373500:intron 25.0%
! GATAACAATATTACCTTTGT+TGG + chr3_1:72549171-72549190 None:intergenic 25.0%
! GAAACTGACATAAAATTGAA+AGG + chr3_1:72549253-72549272 None:intergenic 25.0%
!! ACATTTCCTATTTTCACTTT+TGG + chr3_1:72549548-72549567 None:intergenic 25.0%
! TTTGTAGAACTTGATTATAG+TGG - chr3_1:72549804-72549823 Msa0373500:intron 25.0%
! TTGTAGAACTTGATTATAGT+GGG - chr3_1:72549805-72549824 Msa0373500:intron 25.0%
!!! ATTGAAGCGTTAATTTTATC+GGG + chr3_1:72549834-72549853 None:intergenic 25.0%
!!! TCTTTTTCAACATCAATTCA+AGG + chr3_1:72549956-72549975 None:intergenic 25.0%
TACAAAATGCTGAAATGGAA+GGG - chr3_1:72543927-72543946 Msa0373500:intron 30.0%
GATATTATTAAGGAGGAAAC+TGG - chr3_1:72543983-72544002 Msa0373500:intron 30.0%
! CCTAAAAAACTGCAGATTTT+CGG + chr3_1:72544126-72544145 None:intergenic 30.0%
! AGCTATAAGAGGTATGTAAT+GGG + chr3_1:72544208-72544227 None:intergenic 30.0%
! AAGCTATAAGAGGTATGTAA+TGG + chr3_1:72544209-72544228 None:intergenic 30.0%
TGTTCTTGAACTTATGTATG+AGG - chr3_1:72544318-72544337 Msa0373500:CDS 30.0%
GTTCTTGAACTTATGTATGA+GGG - chr3_1:72544319-72544338 Msa0373500:CDS 30.0%
TTCTTGAACTTATGTATGAG+GGG - chr3_1:72544320-72544339 Msa0373500:CDS 30.0%
TATTGTTATGGGAAAATCTC+CGG + chr3_1:72544380-72544399 None:intergenic 30.0%
!!! TTTAGTTTTGGATGTACTGA+CGG - chr3_1:72544441-72544460 Msa0373500:intron 30.0%
TAGAAACAAGACGGAATATA+TGG - chr3_1:72544600-72544619 Msa0373500:intron 30.0%
TGGAATGTAACTTCAGTAAA+AGG - chr3_1:72544620-72544639 Msa0373500:intron 30.0%
ATATCTAAACCGTGTAACTT+GGG + chr3_1:72544692-72544711 None:intergenic 30.0%
TTACACGGTTTAGATATCTT+GGG - chr3_1:72544695-72544714 Msa0373500:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG + chr3_1:72545027-72545046 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr3_1:72545178-72545197 None:intergenic 30.0%
GTTCTATCAAAGACCATATT+TGG + chr3_1:72545213-72545232 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG - chr3_1:72545217-72545236 Msa0373500:CDS 30.0%
TCTTTGATAGAACATTATGG+CGG - chr3_1:72545220-72545239 Msa0373500:CDS 30.0%
TTCTTGAACTTGTATCTGTT+GGG - chr3_1:72545311-72545330 Msa0373500:intron 30.0%
AAAAACAACCTCAGAGAATA+TGG - chr3_1:72545370-72545389 Msa0373500:intron 30.0%
AACCTATGTTTCATACCAAA+GGG + chr3_1:72545423-72545442 None:intergenic 30.0%
ATAGGTTGTTGATGCATATT+AGG - chr3_1:72545436-72545455 Msa0373500:CDS 30.0%
AAAGATGGTGTATCATGTAT+AGG + chr3_1:72545663-72545682 None:intergenic 30.0%
! TCACCAATGAACATCTTTTT+CGG + chr3_1:72545869-72545888 None:intergenic 30.0%
AGATTGATGCTATAGAAAAC+CGG - chr3_1:72546023-72546042 Msa0373500:intron 30.0%
!!! CTCTTGCATGTTTTTTAATC+CGG + chr3_1:72546045-72546064 None:intergenic 30.0%
! GAGCACCAAATTTTACTTAT+TGG - chr3_1:72546180-72546199 Msa0373500:CDS 30.0%
ATTGAATGTTCTTTGCCTAA+GGG - chr3_1:72546269-72546288 Msa0373500:intron 30.0%
TATTAGTCAAATTTCCCCTT+AGG + chr3_1:72546287-72546306 None:intergenic 30.0%
AACCAAGAACAAATACTCTT+AGG - chr3_1:72546550-72546569 Msa0373500:intron 30.0%
ACCAAGAACAAATACTCTTA+GGG - chr3_1:72546551-72546570 Msa0373500:intron 30.0%
!! TGTGATCCATTGTTTTACTT+TGG - chr3_1:72546640-72546659 Msa0373500:intron 30.0%
TACTATCTTTAGTGCATGTT+TGG - chr3_1:72546684-72546703 Msa0373500:intron 30.0%
!!! TGTTTGGTTTTACATTTGAG+AGG - chr3_1:72546700-72546719 Msa0373500:intron 30.0%
TGGATCTTACTTAAATCTTG+GGG - chr3_1:72546800-72546819 Msa0373500:intron 30.0%
!! TGTTGTATGTATTGATTCTC+CGG + chr3_1:72547142-72547161 None:intergenic 30.0%
GAAACATCGAGTTAAATTGT+AGG - chr3_1:72547333-72547352 Msa0373500:intron 30.0%
AAAGAAGCAAGCTATTGATA+AGG - chr3_1:72547522-72547541 Msa0373500:CDS 30.0%
TAATCAGAGAGAGTTATCAA+TGG - chr3_1:72547570-72547589 Msa0373500:CDS 30.0%
TATTTGAAGAACTTGCAATG+TGG + chr3_1:72547821-72547840 None:intergenic 30.0%
TTGTGCTTAACAGATTATTG+CGG - chr3_1:72547902-72547921 Msa0373500:intron 30.0%
TTAATCACAATTAGTGGCAT+AGG - chr3_1:72548057-72548076 Msa0373500:intron 30.0%
TAATCACAATTAGTGGCATA+GGG - chr3_1:72548058-72548077 Msa0373500:intron 30.0%
! AATTGCATTTTATCTCAGCT+TGG - chr3_1:72548134-72548153 Msa0373500:intron 30.0%
TTCTACATAATCTTCCAACT+GGG + chr3_1:72548335-72548354 None:intergenic 30.0%
TTTCTACATAATCTTCCAAC+TGG + chr3_1:72548336-72548355 None:intergenic 30.0%
GGAAGATTATGTAGAAAGTA+TGG - chr3_1:72548339-72548358 Msa0373500:intron 30.0%
ATGAGATTTATCATTACCTG+AGG + chr3_1:72548427-72548446 None:intergenic 30.0%
TAGCAGAATATCTTTCACTA+TGG - chr3_1:72548600-72548619 Msa0373500:intron 30.0%
AGCAGAATATCTTTCACTAT+GGG - chr3_1:72548601-72548620 Msa0373500:intron 30.0%
GACTCCATATTGTAATATCT+GGG - chr3_1:72548744-72548763 Msa0373500:intron 30.0%
TAAGCCCAGATATTACAATA+TGG + chr3_1:72548751-72548770 None:intergenic 30.0%
CAACATACTGTGTAATAGAA+TGG + chr3_1:72548879-72548898 None:intergenic 30.0%
TCTATTACACAGTATGTTGA+AGG - chr3_1:72548880-72548899 Msa0373500:intron 30.0%
!!! TCTTTTTTCTTTCCACTTAC+TGG - chr3_1:72548927-72548946 Msa0373500:intron 30.0%
TTGAAAAGAAAACCAGTAAG+TGG + chr3_1:72548942-72548961 None:intergenic 30.0%
!! TTTGTTATTTCCTGAATCTG+TGG - chr3_1:72548992-72549011 Msa0373500:intron 30.0%
!!! GAAGTTTTTTGATCAAGGAT+TGG - chr3_1:72549016-72549035 Msa0373500:intron 30.0%
ACCATATTCTTAACCAACAA+AGG - chr3_1:72549155-72549174 Msa0373500:intron 30.0%
! ACCTTTGTTGGTTAAGAATA+TGG + chr3_1:72549159-72549178 None:intergenic 30.0%
TTATAAATGATTTACTGGGC+AGG - chr3_1:72549692-72549711 Msa0373500:intron 30.0%
TGTAGAACTTGATTATAGTG+GGG - chr3_1:72549806-72549825 Msa0373500:intron 30.0%
!! AAATTCCCGCCATTTTCATT+CGG - chr3_1:72543392-72543411 Msa0373500:three_prime_UTR 35.0%
! ACTTTTCTTCTCTTCGTCTA+GGG + chr3_1:72543437-72543456 None:intergenic 35.0%
AATCAGAATTCAAGAAAGCC+AGG - chr3_1:72543485-72543504 Msa0373500:three_prime_UTR 35.0%
GGGAAGCTTATTATCTTAAC+AGG - chr3_1:72543691-72543710 Msa0373500:CDS 35.0%
GTACAAAATGCTGAAATGGA+AGG - chr3_1:72543926-72543945 Msa0373500:intron 35.0%
GGTTTGCATCTTTATTCCAT+CGG - chr3_1:72544004-72544023 Msa0373500:intron 35.0%
TTACATTTCTACATCTCCGA+TGG + chr3_1:72544023-72544042 None:intergenic 35.0%
!!! CCGAAAATCTGCAGTTTTTT+AGG - chr3_1:72544123-72544142 Msa0373500:CDS 35.0%
!!! CTAGCAGAATTTTTTGCAGA+AGG + chr3_1:72544267-72544286 None:intergenic 35.0%
TCTTGAACTTATGTATGAGG+GGG - chr3_1:72544321-72544340 Msa0373500:CDS 35.0%
! GGAGATTTTCCCATAACAAT+AGG - chr3_1:72544379-72544398 Msa0373500:CDS 35.0%
! TCTGCAAAAAGCATACATCT+CGG + chr3_1:72544487-72544506 None:intergenic 35.0%
AACTTCAGTAAAAGGAGAAG+TGG - chr3_1:72544628-72544647 Msa0373500:intron 35.0%
ACTTCAGTAAAAGGAGAAGT+GGG - chr3_1:72544629-72544648 Msa0373500:intron 35.0%
ATATCATACCCCAAGTTACA+CGG - chr3_1:72544680-72544699 Msa0373500:intron 35.0%
TATCTAAACCGTGTAACTTG+GGG + chr3_1:72544691-72544710 None:intergenic 35.0%
GATATCTAAACCGTGTAACT+TGG + chr3_1:72544693-72544712 None:intergenic 35.0%
GTTACACGGTTTAGATATCT+TGG - chr3_1:72544694-72544713 Msa0373500:intron 35.0%
!! TTCTCCGTCATTTTGTACTA+TGG + chr3_1:72544722-72544741 None:intergenic 35.0%
TACATCATCGTATTCAAGCT+GGG - chr3_1:72544755-72544774 Msa0373500:CDS 35.0%
! AAAGTACCACTTAAGCTGAA+AGG - chr3_1:72544820-72544839 Msa0373500:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG + chr3_1:72544829-72544848 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG - chr3_1:72544833-72544852 Msa0373500:intron 35.0%
AGACTAGACATGATAGGATT+AGG - chr3_1:72544968-72544987 Msa0373500:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG - chr3_1:72545020-72545039 Msa0373500:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr3_1:72545040-72545059 Msa0373500:CDS 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr3_1:72545045-72545064 Msa0373500:CDS 35.0%
TTGATCTACTCTTCTTACCA+CGG + chr3_1:72545097-72545116 None:intergenic 35.0%
GGTAAGAAGAGTAGATCAAA+TGG - chr3_1:72545098-72545117 Msa0373500:CDS 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr3_1:72545101-72545120 Msa0373500:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr3_1:72545185-72545204 Msa0373500:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr3_1:72545197-72545216 Msa0373500:intron 35.0%
GTTCTTGAACTTGTATCTGT+TGG - chr3_1:72545310-72545329 Msa0373500:intron 35.0%
ATCCCTTTGGTATGAAACAT+AGG - chr3_1:72545418-72545437 Msa0373500:intron 35.0%
CAACCTATGTTTCATACCAA+AGG + chr3_1:72545424-72545443 None:intergenic 35.0%
GCATATTAGGATAGACTACT+AGG - chr3_1:72545449-72545468 Msa0373500:CDS 35.0%
TGATGAAAATCCTTGTATGC+AGG - chr3_1:72545565-72545584 Msa0373500:intron 35.0%
! CATTTAAGATCCTGCATACA+AGG + chr3_1:72545578-72545597 None:intergenic 35.0%
ACATCTTGACGATTATTCGT+TGG + chr3_1:72545633-72545652 None:intergenic 35.0%
CATGATACACCATCTTTGTA+TGG - chr3_1:72545666-72545685 Msa0373500:intron 35.0%
!!! TATTTTAGCATCTGGAAAGC+CGG - chr3_1:72545692-72545711 Msa0373500:intron 35.0%
! TGGTTACACCCTTTTCAAAA+CGG - chr3_1:72545721-72545740 Msa0373500:intron 35.0%
!!! CTATCTGTCCGTTTTGAAAA+GGG + chr3_1:72545732-72545751 None:intergenic 35.0%
! TGTTTTCCATTTTCTACGTC+AGG + chr3_1:72545786-72545805 None:intergenic 35.0%
AAGCCGAAAAAGATGTTCAT+TGG - chr3_1:72545863-72545882 Msa0373500:CDS 35.0%
! AGATGTTCATTGGTGATTCA+TGG - chr3_1:72545873-72545892 Msa0373500:CDS 35.0%
GTTGCAGATTCATGTATGAT+AGG - chr3_1:72545913-72545932 Msa0373500:CDS 35.0%
ATTCATGTATGATAGGACTG+AGG - chr3_1:72545920-72545939 Msa0373500:CDS 35.0%
! GTTTGTTGATACCTGATTAC+TGG - chr3_1:72545995-72546014 Msa0373500:CDS 35.0%
AATGGATGCATTAAACTCAC+CGG + chr3_1:72546121-72546140 None:intergenic 35.0%
ATGAGTATGCATGAGAGAAA+TGG + chr3_1:72546139-72546158 None:intergenic 35.0%
CATTGAATGTTCTTTGCCTA+AGG - chr3_1:72546268-72546287 Msa0373500:intron 35.0%
TTGAATGTTCTTTGCCTAAG+GGG - chr3_1:72546270-72546289 Msa0373500:intron 35.0%
TGACAGACTTCTCATTAAGA+CGG + chr3_1:72546378-72546397 None:intergenic 35.0%
TCCATCTATTGCCAATATGT+TGG - chr3_1:72546477-72546496 Msa0373500:intron 35.0%
TCCAACATATTGGCAATAGA+TGG + chr3_1:72546481-72546500 None:intergenic 35.0%
CCAAGAACAAATACTCTTAG+GGG - chr3_1:72546552-72546571 Msa0373500:intron 35.0%
! TTAGGTCTTATGTCAACTCA+AGG - chr3_1:72546600-72546619 Msa0373500:intron 35.0%
! TAGGTCTTATGTCAACTCAA+GGG - chr3_1:72546601-72546620 Msa0373500:intron 35.0%
AATTGAACAGTCACATGTGT+TGG - chr3_1:72546922-72546941 Msa0373500:intron 35.0%
TCTTGATAGGTAGTTGGAAT+TGG - chr3_1:72547409-72547428 Msa0373500:CDS 35.0%
TTGCCTAGTTGCATCTAAAT+TGG - chr3_1:72547453-72547472 Msa0373500:intron 35.0%
!! TCAATAGCTTGCTTCTTTGA+AGG + chr3_1:72547520-72547539 None:intergenic 35.0%
TGATTACAAAGCAGTTCAGT+TGG + chr3_1:72547556-72547575 None:intergenic 35.0%
! TGTTTGCTAATGTGTTATCC+TGG - chr3_1:72547609-72547628 Msa0373500:CDS 35.0%
! TAGTGCAGAATTTAGTTTCC+AGG + chr3_1:72547630-72547649 None:intergenic 35.0%
AGATAGGATGTTACTGAGTT+AGG + chr3_1:72547740-72547759 None:intergenic 35.0%
CACTTCCTATGATTATTCCT+AGG + chr3_1:72547769-72547788 None:intergenic 35.0%
ATTACCAATACAAGCAACTG+TGG + chr3_1:72548005-72548024 None:intergenic 35.0%
AGAAAGATGTAGACTGGTAT+AGG + chr3_1:72548035-72548054 None:intergenic 35.0%
GGGTGTTCAGAATCAATAAA+TGG + chr3_1:72548161-72548180 None:intergenic 35.0%
TATTTCGTTTGGAAGTCTTG+AGG - chr3_1:72548222-72548241 Msa0373500:intron 35.0%
TTCTCCTTGTACCATGTATA+CGG - chr3_1:72548377-72548396 Msa0373500:intron 35.0%
CCTGAGGAAAAACAAAATCA+TGG + chr3_1:72548411-72548430 None:intergenic 35.0%
!!! CCATGATTTTGTTTTTCCTC+AGG - chr3_1:72548408-72548427 Msa0373500:intron 35.0%
ATTTGATATCAGTCAACCTC+AGG - chr3_1:72548524-72548543 Msa0373500:intron 35.0%
AATCATTATACCTGAACCTG+AGG + chr3_1:72548543-72548562 None:intergenic 35.0%
!!! GCAAATGAGGTATTGCATTT+TGG - chr3_1:72548693-72548712 Msa0373500:intron 35.0%
!! TTTTGGATAACCGACTCTTA+TGG - chr3_1:72548710-72548729 Msa0373500:intron 35.0%
ATCAAACAAGCCATAAGAGT+CGG + chr3_1:72548723-72548742 None:intergenic 35.0%
GGACTCCATATTGTAATATC+TGG - chr3_1:72548743-72548762 Msa0373500:intron 35.0%
AAAAACTTCTCCACAGATTC+AGG + chr3_1:72549005-72549024 None:intergenic 35.0%
!!! GTGGAGAAGTTTTTTGATCA+AGG - chr3_1:72549011-72549030 Msa0373500:intron 35.0%
TTTCTATCCACTTTATCCAC+CGG - chr3_1:72549269-72549288 Msa0373500:intron 35.0%
GAAGGTAAGATAAGAACATC+TGG + chr3_1:72549354-72549373 None:intergenic 35.0%
! TTACCTTGACAAAGTACTTG+AGG + chr3_1:72549380-72549399 None:intergenic 35.0%
GTAGAACTTGATTATAGTGG+GGG - chr3_1:72549807-72549826 Msa0373500:intron 35.0%
TTGAGGTTGCCGAATGAAAA+TGG + chr3_1:72543404-72543423 None:intergenic 40.0%
! CACTTTTCTTCTCTTCGTCT+AGG + chr3_1:72543438-72543457 None:intergenic 40.0%
TTCTTCTTCGAAATCGAACC+TGG + chr3_1:72543506-72543525 None:intergenic 40.0%
ACAGTGATGCAAGCTATAAG+AGG + chr3_1:72544219-72544238 None:intergenic 40.0%
CTTGCATCACTGTGTAAATG+TGG - chr3_1:72544226-72544245 Msa0373500:intron 40.0%
!!! CAGAATTTTTTGCAGAAGGC+CGG + chr3_1:72544263-72544282 None:intergenic 40.0%
TGGTGCAGTCCTATTGTTAT+GGG + chr3_1:72544391-72544410 None:intergenic 40.0%
TTGGTGCAGTCCTATTGTTA+TGG + chr3_1:72544392-72544411 None:intergenic 40.0%
ATAACAATAGGACTGCACCA+AGG - chr3_1:72544391-72544410 Msa0373500:intron 40.0%
TAACAATAGGACTGCACCAA+GGG - chr3_1:72544392-72544411 Msa0373500:intron 40.0%
!! ATTCCGTCTTGTTTCTACTC+AGG + chr3_1:72544597-72544616 None:intergenic 40.0%
TCTACCTTAGAGGTGAAAGT+TGG - chr3_1:72544652-72544671 Msa0373500:intron 40.0%
ATCTCCAACTTTCACCTCTA+AGG + chr3_1:72544659-72544678 None:intergenic 40.0%
GGGTCCATAGTACAAAATGA+CGG - chr3_1:72544715-72544734 Msa0373500:intron 40.0%
GTACATCATCGTATTCAAGC+TGG - chr3_1:72544754-72544773 Msa0373500:CDS 40.0%
GTGGTAAGACTAGACATGAT+AGG - chr3_1:72544962-72544981 Msa0373500:intron 40.0%
TGACATCATTAGAGAGAGAG+TGG - chr3_1:72544993-72545012 Msa0373500:intron 40.0%
GACATCATTAGAGAGAGAGT+GGG - chr3_1:72544994-72545013 Msa0373500:intron 40.0%
ACATCATTAGAGAGAGAGTG+GGG - chr3_1:72544995-72545014 Msa0373500:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr3_1:72545126-72545145 Msa0373500:intron 40.0%
TTGTATCTGTTGGGTCGTAA+GGG - chr3_1:72545320-72545339 Msa0373500:intron 40.0%
! ACACAGAGTATCTATCCCTT+TGG - chr3_1:72545405-72545424 Msa0373500:intron 40.0%
!!! CCTATCTGTCCGTTTTGAAA+AGG + chr3_1:72545733-72545752 None:intergenic 40.0%
! CCTTTTCAAAACGGACAGAT+AGG - chr3_1:72545730-72545749 Msa0373500:intron 40.0%
ACCATACCTGACGTAGAAAA+TGG - chr3_1:72545777-72545796 Msa0373500:intron 40.0%
! TCCATTTTCTACGTCAGGTA+TGG + chr3_1:72545781-72545800 None:intergenic 40.0%
! TCATTGGTGATTCATGGATC+AGG - chr3_1:72545879-72545898 Msa0373500:CDS 40.0%
! CATTGGTGATTCATGGATCA+GGG - chr3_1:72545880-72545899 Msa0373500:CDS 40.0%
ATGAATCTGCAACCTGGTTT+CGG + chr3_1:72545906-72545925 None:intergenic 40.0%
TCATACATGAATCTGCAACC+TGG + chr3_1:72545912-72545931 None:intergenic 40.0%
GTATGATAGGACTGAGGATA+AGG - chr3_1:72545926-72545945 Msa0373500:CDS 40.0%
CAATCTACATGCCAGTAATC+AGG + chr3_1:72546009-72546028 None:intergenic 40.0%
!!! CAGAGAAGCTTTTTTTCCGT+TGG - chr3_1:72546328-72546347 Msa0373500:intron 40.0%
GTCACAACAAATCATGCCAA+CGG + chr3_1:72546347-72546366 None:intergenic 40.0%
!! GTTGGCATGATTTGTTGTGA+CGG - chr3_1:72546346-72546365 Msa0373500:intron 40.0%
!! ATGATTTGTTGTGACGGAGA+AGG - chr3_1:72546352-72546371 Msa0373500:intron 40.0%
CATATCCATTGTCTCTTCTC+AGG - chr3_1:72546450-72546469 Msa0373500:intron 40.0%
!! CCCCTAAGAGTATTTGTTCT+TGG + chr3_1:72546555-72546574 None:intergenic 40.0%
GTGTGAATGCTTCATAGGTT+TGG + chr3_1:72546841-72546860 None:intergenic 40.0%
TGTCTGTGTGAATGCTTCAT+AGG + chr3_1:72546846-72546865 None:intergenic 40.0%
!! ACATGTGTTGGTGTTGTGTT+TGG - chr3_1:72546934-72546953 Msa0373500:intron 40.0%
!! CATGTGTTGGTGTTGTGTTT+GGG - chr3_1:72546935-72546954 Msa0373500:intron 40.0%
!! TGTATGTATTGATTCTCCGG+TGG + chr3_1:72547139-72547158 None:intergenic 40.0%
CAGAATGCTCAATACTGTTG+AGG + chr3_1:72547243-72547262 None:intergenic 40.0%
! CTCAACAGTATTGAGCATTC+TGG - chr3_1:72547241-72547260 Msa0373500:intron 40.0%
! AACAGTATTGAGCATTCTGG+AGG - chr3_1:72547244-72547263 Msa0373500:intron 40.0%
! ACAGTATTGAGCATTCTGGA+GGG - chr3_1:72547245-72547264 Msa0373500:intron 40.0%
TTAAACGTTGCAAGTCAAGG+CGG + chr3_1:72547279-72547298 None:intergenic 40.0%
! AGCCATTATTCAGTTTTCCC+TGG - chr3_1:72547298-72547317 Msa0373500:intron 40.0%
GACCAGGGAAAACTGAATAA+TGG + chr3_1:72547303-72547322 None:intergenic 40.0%
! TTATTCAGTTTTCCCTGGTC+AGG - chr3_1:72547303-72547322 Msa0373500:intron 40.0%
GCTTCATCTTGATAGGTAGT+TGG - chr3_1:72547403-72547422 Msa0373500:CDS 40.0%
TGATAGGTAGTTGGAATTGG+AGG - chr3_1:72547412-72547431 Msa0373500:intron 40.0%
GATAGGTAGTTGGAATTGGA+GGG - chr3_1:72547413-72547432 Msa0373500:intron 40.0%
CCACCAATTTAGATGCAACT+AGG + chr3_1:72547459-72547478 None:intergenic 40.0%
CCTAGTTGCATCTAAATTGG+TGG - chr3_1:72547456-72547475 Msa0373500:intron 40.0%
TGAAGGATTCAAATCCTCCT+TGG + chr3_1:72547503-72547522 None:intergenic 40.0%
! TATTCCTAGGCTAGCTAGAT+AGG + chr3_1:72547756-72547775 None:intergenic 40.0%
! GCTAGCCTAGGAATAATCAT+AGG - chr3_1:72547761-72547780 Msa0373500:CDS 40.0%
CAGTTCCTTTCTTGATGTCT+GGG + chr3_1:72548181-72548200 None:intergenic 40.0%
ACAGTTCCTTTCTTGATGTC+TGG + chr3_1:72548182-72548201 None:intergenic 40.0%
AGACATCAAGAAAGGAACTG+TGG - chr3_1:72548181-72548200 Msa0373500:intron 40.0%
TCTCCTTGTACCATGTATAC+GGG - chr3_1:72548378-72548397 Msa0373500:intron 40.0%
GGTTGACTGATATCAAATGC+AGG + chr3_1:72548522-72548541 None:intergenic 40.0%
!! GACTCTTATGGCTTGTTTGA+TGG - chr3_1:72548722-72548741 Msa0373500:intron 40.0%
GCTTATCTAGACGAAAAACC+TGG - chr3_1:72548766-72548785 Msa0373500:intron 40.0%
TTGATCAAGGATTGGGTTTC+AGG - chr3_1:72549024-72549043 Msa0373500:intron 40.0%
! ATTGGGTTTCAGGTCAAAGT+TGG - chr3_1:72549034-72549053 Msa0373500:intron 40.0%
GATGTTCTCAAACAGATCAG+TGG - chr3_1:72549070-72549089 Msa0373500:intron 40.0%
AGTCTACTCAAGCGATCAAT+GGG + chr3_1:72549130-72549149 None:intergenic 40.0%
AAGTCTACTCAAGCGATCAA+TGG + chr3_1:72549131-72549150 None:intergenic 40.0%
TGGAACCAGTGATAGTTGAA+GGG + chr3_1:72549334-72549353 None:intergenic 40.0%
! ACAAAGTACTTGAGGTCTGA+AGG + chr3_1:72549372-72549391 None:intergenic 40.0%
AGACCTCAAGTACTTTGTCA+AGG - chr3_1:72549374-72549393 Msa0373500:intron 40.0%
ATGTAATATGCCTGTGAGCA+GGG - chr3_1:72549623-72549642 Msa0373500:intron 40.0%
GAAATGCATTGCCGTAAATC+CGG - chr3_1:72549749-72549768 Msa0373500:CDS 40.0%
AAATGCATTGCCGTAAATCC+GGG - chr3_1:72549750-72549769 Msa0373500:CDS 40.0%
ACCTACTTGCTTTCGAAACT+CGG - chr3_1:72549901-72549920 Msa0373500:intron 40.0%
AGGTTGCCGAATGAAAATGG+CGG + chr3_1:72543401-72543420 None:intergenic 45.0%
! TCTAGGGTTTCTCTGAGTTG+AGG + chr3_1:72543421-72543440 None:intergenic 45.0%
GGTGATATTTGACAGACAGC+TGG - chr3_1:72543892-72543911 Msa0373500:intron 45.0%
!! TACATCTCGGTGCTAACTCT+TGG + chr3_1:72544474-72544493 None:intergenic 45.0%
! GCAGATGATGTAGTCTTGCT+TGG - chr3_1:72544502-72544521 Msa0373500:intron 45.0%
ATCATCGTATTCAAGCTGGG+TGG - chr3_1:72544758-72544777 Msa0373500:CDS 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG - chr3_1:72544767-72544786 Msa0373500:CDS 45.0%
TTGAAATGGAGAAGAGCCTC+AGG - chr3_1:72544781-72544800 Msa0373500:intron 45.0%
CTTATCGCACAAAACACCTG+AGG + chr3_1:72544800-72544819 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG - chr3_1:72544867-72544886 Msa0373500:intron 45.0%
TCCGTACCATACAACATTGC+CGG + chr3_1:72544871-72544890 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG - chr3_1:72544875-72544894 Msa0373500:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG - chr3_1:72544876-72544895 Msa0373500:intron 45.0%
CGCTTACTTTACTCTCGTGT+TGG + chr3_1:72544912-72544931 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG - chr3_1:72544915-72544934 Msa0373500:CDS 45.0%
CATCATTAGAGAGAGAGTGG+GGG - chr3_1:72544996-72545015 Msa0373500:intron 45.0%
GGTTTGGACATGTAGAGAGA+AGG - chr3_1:72545061-72545080 Msa0373500:CDS 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr3_1:72545110-72545129 Msa0373500:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr3_1:72545120-72545139 Msa0373500:intron 45.0%
AACGCCTTATCCCACTAAGT+GGG + chr3_1:72545267-72545286 None:intergenic 45.0%
CTTGTATCTGTTGGGTCGTA+AGG - chr3_1:72545319-72545338 Msa0373500:intron 45.0%
!! ATTCGGTGCCATATTCTCTG+AGG + chr3_1:72545381-72545400 None:intergenic 45.0%
GGATAGACTACTAGGTACAG+TGG - chr3_1:72545457-72545476 Msa0373500:CDS 45.0%
CGATTATTCGTTGGTGTGCT+GGG + chr3_1:72545624-72545643 None:intergenic 45.0%
ACGATTATTCGTTGGTGTGC+TGG + chr3_1:72545625-72545644 None:intergenic 45.0%
AAAACGGACAGATAGGTTCG+CGG - chr3_1:72545737-72545756 Msa0373500:intron 45.0%
ATGCATTAAACTCACCGGTG+AGG + chr3_1:72546116-72546135 None:intergenic 45.0%
ATCGACCTGAGAAGAGACAA+TGG + chr3_1:72546458-72546477 None:intergenic 45.0%
!! TGTTGGTGTTGTGTTTGGGT+TGG - chr3_1:72546939-72546958 Msa0373500:intron 45.0%
!! GTTGGTGTTGTGTTTGGGTT+GGG - chr3_1:72546940-72546959 Msa0373500:intron 45.0%
! CAGTATTGAGCATTCTGGAG+GGG - chr3_1:72547246-72547265 Msa0373500:intron 45.0%
GGCTTAAACGTTGCAAGTCA+AGG + chr3_1:72547282-72547301 None:intergenic 45.0%
GTTTCTTACTCACCTGACCA+GGG + chr3_1:72547318-72547337 None:intergenic 45.0%
TGTTTCTTACTCACCTGACC+AGG + chr3_1:72547319-72547338 None:intergenic 45.0%
CGGAAAGGCTTCATCTTGAT+AGG - chr3_1:72547396-72547415 Msa0373500:CDS 45.0%
TATACCTACCTCTGTTGCCA+AGG - chr3_1:72547483-72547502 Msa0373500:intron 45.0%
! ACATCCTATCTAGCTAGCCT+AGG - chr3_1:72547749-72547768 Msa0373500:CDS 45.0%
GCTTAACAGATTATTGCGGC+TGG - chr3_1:72547906-72547925 Msa0373500:intron 45.0%
TATGCCAGCAGTTCTACAAG+AGG + chr3_1:72547966-72547985 None:intergenic 45.0%
ACCACCACAGTTGCTTGTAT+TGG - chr3_1:72547998-72548017 Msa0373500:intron 45.0%
ACCAATACAAGCAACTGTGG+TGG + chr3_1:72548002-72548021 None:intergenic 45.0%
GAACACCCAGACATCAAGAA+AGG - chr3_1:72548173-72548192 Msa0373500:intron 45.0%
TCAAGAAAGGAACTGTGGAC+AGG - chr3_1:72548186-72548205 Msa0373500:intron 45.0%
CAAGAAAGGAACTGTGGACA+GGG - chr3_1:72548187-72548206 Msa0373500:intron 45.0%
TCGTTTGGAAGTCTTGAGGA+AGG - chr3_1:72548226-72548245 Msa0373500:intron 45.0%
AAGGTGGAGGTTAGAACTTG+GGG + chr3_1:72548297-72548316 None:intergenic 45.0%
CAAGGTGGAGGTTAGAACTT+GGG + chr3_1:72548298-72548317 None:intergenic 45.0%
TCAAGGTGGAGGTTAGAACT+TGG + chr3_1:72548299-72548318 None:intergenic 45.0%
CATCCCGTATACATGGTACA+AGG + chr3_1:72548384-72548403 None:intergenic 45.0%
TGGTTAGCATCCCGTATACA+TGG + chr3_1:72548391-72548410 None:intergenic 45.0%
TATCAGTCAACCTCAGGTTC+AGG - chr3_1:72548530-72548549 Msa0373500:intron 45.0%
ATAGCCAGTCTCACTAATCC+TGG - chr3_1:72548660-72548679 Msa0373500:intron 45.0%
! GATTCCAGGATTAGTGAGAC+TGG + chr3_1:72548667-72548686 None:intergenic 45.0%
CACTAATCCTGGAATCTTCG+AGG - chr3_1:72548671-72548690 Msa0373500:intron 45.0%
TCATTTGCCTCGAAGATTCC+AGG + chr3_1:72548681-72548700 None:intergenic 45.0%
TGGAATCTTCGAGGCAAATG+AGG - chr3_1:72548680-72548699 Msa0373500:intron 45.0%
! CAAAGTTGGTTGCTGCACTT+TGG - chr3_1:72549048-72549067 Msa0373500:intron 45.0%
TCTCAAACAGATCAGTGGAG+AGG - chr3_1:72549075-72549094 Msa0373500:intron 45.0%
! TGTTCCCTTGGACTTTTCTC+TGG - chr3_1:72549299-72549318 Msa0373500:intron 45.0%
AGTGATAGTTGAAGGGCTTC+TGG + chr3_1:72549327-72549346 None:intergenic 45.0%
AGAAGCCCTTCAACTATCAC+TGG - chr3_1:72549326-72549345 Msa0373500:intron 45.0%
CTGGAACCAGTGATAGTTGA+AGG + chr3_1:72549335-72549354 None:intergenic 45.0%
CATGTAATATGCCTGTGAGC+AGG - chr3_1:72549622-72549641 Msa0373500:intron 45.0%
!! GGGCAGGTTCTTGATAATGA+AGG - chr3_1:72549708-72549727 Msa0373500:intron 45.0%
GGCAATGCATTTCATGCTGT+TGG + chr3_1:72549742-72549761 None:intergenic 45.0%
GGCTAATCTTCCCGGATTTA+CGG + chr3_1:72549763-72549782 None:intergenic 45.0%
! AATCCGGGAAGATTAGCCAA+AGG - chr3_1:72549765-72549784 Msa0373500:CDS 45.0%
! ATCCGGGAAGATTAGCCAAA+GGG - chr3_1:72549766-72549785 Msa0373500:CDS 45.0%
CCTACTTGCTTTCGAAACTC+GGG - chr3_1:72549902-72549921 Msa0373500:intron 45.0%
!!! TTTATTTCAAAATTTTATTT+TGG + chr3_1:72547096-72547115 None:intergenic 5.0%
GGTTGCCGAATGAAAATGGC+GGG + chr3_1:72543400-72543419 None:intergenic 50.0%
AGCTTGAGACGAGATCGGAA+GGG + chr3_1:72543671-72543690 None:intergenic 50.0%
TTCCGATCTCGTCTCAAGCT+GGG - chr3_1:72543671-72543690 Msa0373500:CDS 50.0%
TTCCCAGCTTGAGACGAGAT+CGG + chr3_1:72543676-72543695 None:intergenic 50.0%
AAGGACTTAGGGTTGACCCT+TGG + chr3_1:72544411-72544430 None:intergenic 50.0%
! TAGTCTTGCTTGGTGAGTCG+AGG - chr3_1:72544512-72544531 Msa0373500:intron 50.0%
! AGTCTTGCTTGGTGAGTCGA+GGG - chr3_1:72544513-72544532 Msa0373500:intron 50.0%
GAGTCGAGGGAGGAGTTAAA+CGG - chr3_1:72544526-72544545 Msa0373500:intron 50.0%
AGTCGAGGGAGGAGTTAAAC+GGG - chr3_1:72544527-72544546 Msa0373500:intron 50.0%
TAAACGGGAGGCTAGAGACT+TGG - chr3_1:72544542-72544561 Msa0373500:intron 50.0%
! AGGCAAGCCTTAGAAGCGTA+CGG - chr3_1:72544565-72544584 Msa0373500:intron 50.0%
!! CCGTCTTGTTTCTACTCAGG+CGG + chr3_1:72544594-72544613 None:intergenic 50.0%
CCGCCTGAGTAGAAACAAGA+CGG - chr3_1:72544591-72544610 Msa0373500:intron 50.0%
GAGAAGTGGGTCTACCTTAG+AGG - chr3_1:72544642-72544661 Msa0373500:intron 50.0%
GTCAGACCGGCAATGTTGTA+TGG - chr3_1:72544862-72544881 Msa0373500:intron 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG - chr3_1:72544923-72544942 Msa0373500:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG - chr3_1:72544943-72544962 Msa0373500:intron 50.0%
TCTTCTTACCACGGCGTCTA+CGG + chr3_1:72545088-72545107 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr3_1:72545262-72545281 None:intergenic 50.0%
ACGCCTTATCCCACTAAGTG+GGG + chr3_1:72545266-72545285 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG + chr3_1:72545268-72545287 None:intergenic 50.0%
! AAGGGTGTAACCAGATCAGC+CGG + chr3_1:72545714-72545733 None:intergenic 50.0%
!! CAAGAGCACTTGTAGCCTCT+GGG - chr3_1:72546059-72546078 Msa0373500:intron 50.0%
TGGTTCTTCATAGAGCCCAG+AGG + chr3_1:72546077-72546096 None:intergenic 50.0%
GAGGCAATTGAAGGGTCTGT+TGG + chr3_1:72546097-72546116 None:intergenic 50.0%
AGACCCTTCAATTGCCTCAC+CGG - chr3_1:72546099-72546118 Msa0373500:intron 50.0%
TCACCGGTGAGGCAATTGAA+GGG + chr3_1:72546105-72546124 None:intergenic 50.0%
AGTCTGTCATGTTGCAGAGC+AGG - chr3_1:72546389-72546408 Msa0373500:intron 50.0%
!! CTCTGTAGCACCGACTCTTA+CGG + chr3_1:72546981-72547000 None:intergenic 50.0%
! ATTGGAGGGCATAATCCCAG+TGG - chr3_1:72547427-72547446 Msa0373500:intron 50.0%
! TTGGAGGGCATAATCCCAGT+GGG - chr3_1:72547428-72547447 Msa0373500:intron 50.0%
CAAATCCTCCTTGGCAACAG+AGG + chr3_1:72547494-72547513 None:intergenic 50.0%
TGAGCCTCTTGTAGAACTGC+TGG - chr3_1:72547959-72547978 Msa0373500:intron 50.0%
GAACAGCAAGTGCATCAAGG+TGG + chr3_1:72548313-72548332 None:intergenic 50.0%
TGGGAACAGCAAGTGCATCA+AGG + chr3_1:72548316-72548335 None:intergenic 50.0%
!! ATGCACTTGCTGTTCCCAGT+TGG - chr3_1:72548318-72548337 Msa0373500:intron 50.0%
GCTGACACGCCATAAGCATA+TGG - chr3_1:72548788-72548807 Msa0373500:intron 50.0%
CTATCCACTTTATCCACCGG+CGG - chr3_1:72549272-72549291 Msa0373500:intron 50.0%
! TCCGGGAAGATTAGCCAAAG+GGG - chr3_1:72549767-72549786 Msa0373500:CDS 50.0%
TCCCCTTTGGCTAATCTTCC+CGG + chr3_1:72549771-72549790 None:intergenic 50.0%
! GGAAGATTAGCCAAAGGGGA+AGG - chr3_1:72549771-72549790 Msa0373500:CDS 50.0%
! AGATTAGCCAAAGGGGAAGG+CGG - chr3_1:72549774-72549793 Msa0373500:CDS 50.0%
CCCGAGTTTCGAAAGCAAGT+AGG + chr3_1:72549905-72549924 None:intergenic 50.0%
GCTTGAGACGAGATCGGAAG+GGG + chr3_1:72543670-72543689 None:intergenic 55.0%
CAGCTTGAGACGAGATCGGA+AGG + chr3_1:72543672-72543691 None:intergenic 55.0%
CTTCCGATCTCGTCTCAAGC+TGG - chr3_1:72543670-72543689 Msa0373500:CDS 55.0%
TTCGACTAGTGTGAGGACGC+AGG - chr3_1:72544345-72544364 Msa0373500:CDS 55.0%
ACTAGTGTGAGGACGCAGGA+TGG - chr3_1:72544349-72544368 Msa0373500:CDS 55.0%
CTAGTGTGAGGACGCAGGAT+GGG - chr3_1:72544350-72544369 Msa0373500:CDS 55.0%
TAGTGTGAGGACGCAGGATG+GGG - chr3_1:72544351-72544370 Msa0373500:CDS 55.0%
GCGGAAACCGTACGCTTCTA+AGG + chr3_1:72544575-72544594 None:intergenic 55.0%
CTATCGGACAGCAGTCAGAC+CGG - chr3_1:72544849-72544868 Msa0373500:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG - chr3_1:72544935-72544954 Msa0373500:intron 55.0%
CTTCTTACCACGGCGTCTAC+GGG + chr3_1:72545087-72545106 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr3_1:72545254-72545273 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr3_1:72545253-72545272 Msa0373500:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr3_1:72545254-72545273 Msa0373500:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr3_1:72545260-72545279 Msa0373500:CDS 55.0%
TCCCAATGTGATGATCCCCC+GGG + chr3_1:72545349-72545368 None:intergenic 55.0%
GTCCCAATGTGATGATCCCC+CGG + chr3_1:72545350-72545369 None:intergenic 55.0%
ATCTGGAAAGCCGGCTGATC+TGG - chr3_1:72545701-72545720 Msa0373500:intron 55.0%
!! GCAAGAGCACTTGTAGCCTC+TGG - chr3_1:72546058-72546077 Msa0373500:intron 55.0%
CTCACCGGTGAGGCAATTGA+AGG + chr3_1:72546106-72546125 None:intergenic 55.0%
GTGTCAACGTGTCAGTGTCG+TGG + chr3_1:72546874-72546893 None:intergenic 55.0%
!! GTTGTGTTTGGGTTGGGCAC+CGG - chr3_1:72546946-72546965 Msa0373500:intron 55.0%
! ACTCTTACGGAAGGCGTGTC+CGG + chr3_1:72546968-72546987 None:intergenic 55.0%
GACACGCCTTCCGTAAGAGT+CGG - chr3_1:72546968-72546987 Msa0373500:intron 55.0%
!! GTAGCACCGACTCTTACGGA+AGG + chr3_1:72546977-72546996 None:intergenic 55.0%
GCAACTAGGCAATGCCCACT+GGG + chr3_1:72547445-72547464 None:intergenic 55.0%
TGCAACTAGGCAATGCCCAC+TGG + chr3_1:72547446-72547465 None:intergenic 55.0%
ACCTACCTCTGTTGCCAAGG+AGG - chr3_1:72547486-72547505 Msa0373500:intron 55.0%
TCCTCCTTGGCAACAGAGGT+AGG + chr3_1:72547490-72547509 None:intergenic 55.0%
CAGCAAGTGCATCAAGGTGG+AGG + chr3_1:72548310-72548329 None:intergenic 55.0%
ATGCTTATGGCGTGTCAGCC+AGG + chr3_1:72548787-72548806 None:intergenic 55.0%
CTTTCCGCCGGTGGATAAAG+TGG + chr3_1:72549279-72549298 None:intergenic 55.0%
TCCAAGGGAACACTTTCCGC+CGG + chr3_1:72549291-72549310 None:intergenic 55.0%
GGCGCCAGAGAAAAGTCCAA+GGG + chr3_1:72549306-72549325 None:intergenic 55.0%
TGGCGCCAGAGAAAAGTCCA+AGG + chr3_1:72549307-72549326 None:intergenic 55.0%
AGGGGGCTTCGACTAGTGTG+AGG - chr3_1:72544338-72544357 Msa0373500:CDS 60.0%
AGGACGCAGGATGGGGATAC+CGG - chr3_1:72544358-72544377 Msa0373500:CDS 60.0%
! CTTGCTTGGTGAGTCGAGGG+AGG - chr3_1:72544516-72544535 Msa0373500:intron 60.0%
CGAGGGAGGAGTTAAACGGG+AGG - chr3_1:72544530-72544549 Msa0373500:intron 60.0%
ACGGGAGGCTAGAGACTTGG+AGG - chr3_1:72544545-72544564 Msa0373500:intron 60.0%
GTTGGGTCGTAAGGGAAGCC+CGG - chr3_1:72545328-72545347 Msa0373500:intron 60.0%
TTGGGTCGTAAGGGAAGCCC+GGG - chr3_1:72545329-72545348 Msa0373500:intron 60.0%
AGCCCGGGGGATCATCACAT+TGG - chr3_1:72545344-72545363 Msa0373500:intron 60.0%
GCCCGGGGGATCATCACATT+GGG - chr3_1:72545345-72545364 Msa0373500:intron 60.0%
CATGGATCAGGGCCGAAACC+AGG - chr3_1:72545891-72545910 Msa0373500:CDS 60.0%
AAGGGAACACTTTCCGCCGG+TGG + chr3_1:72549288-72549307 None:intergenic 60.0%
!! ACCGGCGGAAAGTGTTCCCT+TGG - chr3_1:72549287-72549306 Msa0373500:intron 60.0%
TGTTCAGCGACCCTGCTCAC+AGG + chr3_1:72549636-72549655 None:intergenic 60.0%
TTAGCCAAAGGGGAAGGCGG+AGG - chr3_1:72549777-72549796 Msa0373500:CDS 60.0%
TGGGTCGTAAGGGAAGCCCG+GGG - chr3_1:72545330-72545349 Msa0373500:intron 65.0%
AGTGCCTCCGCCTTCCCCTT+TGG + chr3_1:72549784-72549803 None:intergenic 65.0%
GAGAAGGCCCGTAGACGCCG+TGG - chr3_1:72545077-72545096 Msa0373500:CDS 70.0%
GGGTCGTAAGGGAAGCCCGG+GGG - chr3_1:72545331-72545350 Msa0373500:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72543389 72550065 72543389 ID=Msa0373500;Name=Msa0373500
chr3_1 mRNA 72543389 72550065 72543389 ID=Msa0373500-mRNA-1;Parent=Msa0373500;Name=Msa0373500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=80|1|1|1|1|1|16|199|616
chr3_1 exon 72543389 72543740 72543389 ID=Msa0373500-mRNA-1:exon:16285;Parent=Msa0373500-mRNA-1
chr3_1 exon 72544059 72544185 72544059 ID=Msa0373500-mRNA-1:exon:16284;Parent=Msa0373500-mRNA-1
chr3_1 exon 72544278 72544408 72544278 ID=Msa0373500-mRNA-1:exon:16283;Parent=Msa0373500-mRNA-1
chr3_1 exon 72544753 72544794 72544753 ID=Msa0373500-mRNA-1:exon:16282;Parent=Msa0373500-mRNA-1
chr3_1 exon 72544903 72544935 72544903 ID=Msa0373500-mRNA-1:exon:16281;Parent=Msa0373500-mRNA-1
chr3_1 exon 72545025 72545117 72545025 ID=Msa0373500-mRNA-1:exon:16280;Parent=Msa0373500-mRNA-1
chr3_1 exon 72545207 72545302 72545207 ID=Msa0373500-mRNA-1:exon:16279;Parent=Msa0373500-mRNA-1
chr3_1 exon 72545435 72545539 72545435 ID=Msa0373500-mRNA-1:exon:16278;Parent=Msa0373500-mRNA-1
chr3_1 exon 72545863 72546036 72545863 ID=Msa0373500-mRNA-1:exon:16277;Parent=Msa0373500-mRNA-1
chr3_1 exon 72546130 72546205 72546130 ID=Msa0373500-mRNA-1:exon:16276;Parent=Msa0373500-mRNA-1
chr3_1 exon 72547044 72547123 72547044 ID=Msa0373500-mRNA-1:exon:16275;Parent=Msa0373500-mRNA-1
chr3_1 exon 72547334 72547429 72547334 ID=Msa0373500-mRNA-1:exon:16274;Parent=Msa0373500-mRNA-1
chr3_1 exon 72547507 72547867 72547507 ID=Msa0373500-mRNA-1:exon:16273;Parent=Msa0373500-mRNA-1
chr3_1 exon 72549416 72549547 72549416 ID=Msa0373500-mRNA-1:exon:16272;Parent=Msa0373500-mRNA-1
chr3_1 exon 72549742 72549817 72549742 ID=Msa0373500-mRNA-1:exon:16271;Parent=Msa0373500-mRNA-1
chr3_1 exon 72549910 72550065 72549910 ID=Msa0373500-mRNA-1:exon:16270;Parent=Msa0373500-mRNA-1
chr3_1 five_prime_UTR 72549986 72550065 72549986 ID=Msa0373500-mRNA-1:five_prime_utr;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72549910 72549985 72549910 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72549742 72549817 72549742 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72549416 72549547 72549416 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72547507 72547867 72547507 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72547334 72547429 72547334 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72547044 72547123 72547044 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72546130 72546205 72546130 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72545863 72546036 72545863 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72545435 72545539 72545435 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72545207 72545302 72545207 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72545025 72545117 72545025 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72544903 72544935 72544903 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72544753 72544794 72544753 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72544278 72544408 72544278 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72544059 72544185 72544059 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 CDS 72543588 72543740 72543588 ID=Msa0373500-mRNA-1:cds;Parent=Msa0373500-mRNA-1
chr3_1 three_prime_UTR 72543389 72543587 72543389 ID=Msa0373500-mRNA-1:three_prime_utr;Parent=Msa0373500-mRNA-1
Gene Sequence

>Msa0373500

ATGAAAGAAGAAATCAAATCAGAATTCAAGAAAGCCAGGTTCGATTTCGAAGAAGAAGAAGAGATTCTCAGCAAATGTCTCACTTTTTGCGTCAACTACAGTCTCACCCCTTCCGATCTCGTCTCAAGCTGGGAAGCTTATTATCTTAACAGACAGCTGGATGAACCAATTGTACAAAATGCTGAAATGGAAGGGTTTCTGTTGCATCTGCAAAATAACGTGAAAGAAGATATTATTAAGGAGGAAACTGGTTTGCATCTTTATTCCATCGGAGATGTAGAAATGATCTTAAATGATGATGATACAAAGGACGATACTCCCAGCACACCAACGAATAATCGTCAAGATGTTTATTCGCCTATACATGATACACCATCTTTGTATGGAAATATTTTAGCATCTGGAAAGCCGGCTGATCTGGTTACACCCTTTTCAAAACGGACAGATAGGTTCGCGGTGAAGTTCAGCATCAATACCATACCTGACGTAGAAAATGGAAAACAAGAACTTAATCACGAGAATGAAGAGAATGACGAGTACAATATTGTTTCGAAAATTGTAAGCCGAAAAAGATGTTCATTGGTGATTCATGGATCAGGGCCGAAACCAGGTTGCAGATTCATGTATGATAGGACTGAGGATAAGATTGATGCTATAGAAAACCGGATTAAAAAACATGCAAGAGCACTTGTAGCCTCTGGGCTCTATGAAGAACCAACAGACCCTTCAATTGCCTCACCGAGAAGCTTTTTTTCCGTTGGCATGATTTGTTGTGACGGAGAAGGCCGTCTTAATGAGAAGTCTGTCATGTTGCAGAGCAGTATTGAGCATTCTGGAGGGGAATGTGTCCGCCTTGACTTGCAACGTTTAAGCCATTATTCAGTTTTCCCTGGTCAGGTAGTTGGAATTGGAGGGCATAATCCCAGTGGGCATTGCCTAGTTGCATCTAAATTGGTGGATTATATACCTACCTCTGTTGCCAAGGAGGATTTGAATCCTTCAAAGAAGCAAGCTATTGATAAGGAGAATCAGCCAACTGAACTGCTTTGTAATCAGAGAGAGTTATCAATGATTATTGCGGCTGGTCCTTTTACTACAACAGACAATTTGTTTTTTGAGCCTCTTGTAGAACTGCTGGCATATGCAAAGCGAAGACCACCACAGTTGCTTGTATTGCTTGGACCATTTATTGATTCTGAACACCCAGACATCAAGAAAGGAACTGTGGACAGGGATTTTGATGAAATATTTCGTTTGGAAGTCTTGAGGAAGTTGGAAGATTATGTAGAAAGTATGGGTTCAACAGTACGTGTTCTCCTTGTACCATGTATACGGGATGCTAACCATGATTTTGTTTTTCCTCAGCCTGCATTTGATATCAGTCAACCTCAGGTTCAGATAGCCAGTCTCACTAATCCTGGAATCTTCGAGGCAAATGAGGTCAAAGTTGGTTGCTGCACTTTGGATGTTCTCAAACAGATCAGTGGAGAGGAGATATCACGAATTTCAGCAGATAGAAAACCCATTGATCGCTTGAGTAGACTTGCAAACCATATTCTTAACCAACAAAGTTTCTATCCACTTTATCCACCGGCGGAAAGTGTTCCCTTGGACTTTTCTCTGGCGCCAGAAGCCCTTCAACTATCACTGGTTCCAGATGTTCTTATCTTACCTTCAGACCTCAAGTACTTTGTCAAGGTTCTTGATAATGAAGGCGAAGAGACCAACAGCATGAAATGCATTGCCGTAAATCCGGGAAGATTAGCCAAAGGGGAAGGCGGAGGCACTTTTGTAGAACTTGATTATAGTGGGGGTCCCGATAAAATTAACGCTTCAATTTTGGCCATTTGA
Protein sequence

>Msa0373500

MKEEIKSEFKKARFDFEEEEEILSKCLTFCVNYSLTPSDLVSSWEAYYLNRQLDEPIVQNAEMEGFLLHLQNNVKEDIIKEETGLHLYSIGDVEMILNDDDTKDDTPSTPTNNRQDVYSPIHDTPSLYGNILASGKPADLVTPFSKRTDRFAVKFSINTIPDVENGKQELNHENEENDEYNIVSKIVSRKRCSLVIHGSGPKPGCRFMYDRTEDKIDAIENRIKKHARALVASGLYEEPTDPSIASPRSFFSVGMICCDGEGRLNEKSVMLQSSIEHSGGECVRLDLQRLSHYSVFPGQVVGIGGHNPSGHCLVASKLVDYIPTSVAKEDLNPSKKQAIDKENQPTELLCNQRELSMIIAAGPFTTTDNLFFEPLVELLAYAKRRPPQLLVLLGPFIDSEHPDIKKGTVDRDFDEIFRLEVLRKLEDYVESMGSTVRVLLVPCIRDANHDFVFPQPAFDISQPQVQIASLTNPGIFEANEVKVGCCTLDVLKQISGEEISRISADRKPIDRLSRLANHILNQQSFYPLYPPAESVPLDFSLAPEALQLSLVPDVLILPSDLKYFVKVLDNEGEETNSMKCIAVNPGRLAKGEGGGTFVELDYSGGPDKINASILAI*