AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0620500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620500 MtrunA17_Chr4g0065401 99.727 733 2 0 1 733 1 733 0.0 1517
Msa0620500 MtrunA17_Chr4g0068511 33.792 654 378 10 35 664 216 838 2.47e-106 345
Msa0620500 MtrunA17_Chr4g0035581 35.394 647 361 14 68 685 170 788 5.12e-106 342
Msa0620500 MtrunA17_Chr8g0381871 33.234 671 369 13 39 658 20 662 3.49e-103 335
Msa0620500 MtrunA17_Chr2g0296441 34.091 616 336 12 93 667 76 662 4.15e-100 325
Msa0620500 MtrunA17_Chr4g0052131 34.173 635 340 15 61 648 38 641 8.22e-96 314
Msa0620500 MtrunA17_Chr7g0269941 36.066 549 311 11 124 658 131 653 9.19e-96 312
Msa0620500 MtrunA17_Chr7g0263661 32.727 605 315 16 118 651 124 707 9.15e-83 280
Msa0620500 MtrunA17_Chr2g0279361 30.873 664 403 18 57 696 34 665 1.77e-77 262
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620500 AT2G07690.1 78.581 733 151 2 1 733 1 727 0.0 1189
Msa0620500 AT2G07690.2 78.308 733 151 3 1 733 1 725 0.0 1180
Msa0620500 AT2G16440.1 31.669 701 421 12 35 703 140 814 8.03e-107 345
Msa0620500 AT1G44900.2 33.692 650 380 9 35 661 216 837 2.92e-105 343
Msa0620500 AT1G44900.1 33.692 650 380 9 35 661 218 839 3.33e-105 343
Msa0620500 AT5G44635.1 32.789 674 370 13 39 658 20 664 1.34e-101 331
Msa0620500 AT5G44635.2 32.789 674 370 13 39 658 20 664 1.92e-101 331
Msa0620500 AT5G46280.3 33.022 642 344 14 57 648 28 633 9.13e-101 325
Msa0620500 AT5G46280.1 33.022 642 344 14 57 648 28 633 6.86e-100 325
Msa0620500 AT5G46280.2 33.121 628 334 13 57 634 28 619 2.64e-99 319
Msa0620500 AT4G02060.2 33.486 657 380 15 40 658 14 651 2.63e-97 317
Msa0620500 AT4G02060.1 33.486 657 380 15 40 658 14 651 2.63e-97 317
Msa0620500 AT3G09660.2 31.746 630 345 17 84 651 97 703 1.13e-88 295
Msa0620500 AT3G09660.3 31.898 627 345 17 84 651 97 700 1.36e-88 295
Msa0620500 AT3G09660.1 31.746 630 345 17 84 651 97 703 2.80e-88 295
Msa0620500 AT5G46280.4 32.574 571 303 12 57 577 28 566 1.12e-85 281
Msa0620500 AT2G14050.1 33.725 510 291 12 149 642 131 609 5.66e-71 244
Msa0620500 AT2G14050.2 33.725 510 291 12 149 642 131 609 6.67e-71 244

Find 206 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATCAACGAGAAGATATT+TGG 0.123004 4_2:-72030881 None:intergenic
CCTATTGCTGTTTATACTTC+TGG 0.178036 4_2:+72033504 Msa0620500:CDS
AAGATTGCTCCGTCTATATT+TGG 0.214278 4_2:+72032895 Msa0620500:CDS
TGTATCTCACGGGCCATTTC+AGG 0.220604 4_2:-72035999 None:intergenic
TCCAGCTGCCTTACAGTAAT+TGG 0.220836 4_2:-72034941 None:intergenic
AGAATGCCAAGCTTCATTTA+AGG 0.228020 4_2:+72036716 Msa0620500:three_prime_UTR
TAGATCTCTGATTTGGGGTT+AGG 0.231546 4_2:-72030665 None:intergenic
TACAGACAACTATTCTTTCT+AGG 0.235658 4_2:+72034098 Msa0620500:CDS
TCAGATTCTTCTTACTTCTA+AGG 0.251667 4_2:+72031153 Msa0620500:CDS
TGAGTTCTTCGAGTTATTTA+AGG 0.252849 4_2:+72036748 Msa0620500:three_prime_UTR
CTGATTTGGGGTTAGGGTTT+CGG 0.258519 4_2:-72030658 None:intergenic
AACTGCGGCGGCGCAGGTTT+TGG 0.265279 4_2:+72031066 Msa0620500:CDS
GAGAAAGGCGTGTTGTATTT+CGG 0.296469 4_2:+72036648 Msa0620500:CDS
CAGTTAGACAGCCTTATATC+AGG 0.298824 4_2:+72032419 Msa0620500:CDS
TCGAAGCTTGTTAAAATTGC+TGG 0.301023 4_2:+72031692 Msa0620500:CDS
CAAATATCTTCTCGTTGATA+TGG 0.306777 4_2:+72030882 Msa0620500:CDS
GTTCCGTGTCGGCCAGGACT+TGG 0.311021 4_2:+72031797 Msa0620500:CDS
GACTTACAGTGCTGCTATCT+TGG 0.313274 4_2:-72033566 None:intergenic
ACCTGTGACTTTGCAGTAGA+TGG 0.318792 4_2:-72033125 None:intergenic
TTCTTCTACATGATACCTAA+TGG 0.324040 4_2:-72036697 None:intergenic
AAGAATAAGAGGGAGGGTTT+TGG 0.333172 4_2:-72030586 None:intergenic
CCGTTTCCAAGGAAGAAAAT+TGG 0.334699 4_2:+72034472 Msa0620500:CDS
GTTCAGATAAAGAGAAGAAT+CGG 0.335265 4_2:+72036115 Msa0620500:CDS
CTCTCTGGTGCATGATTAGA+AGG 0.339833 4_2:-72036607 None:intergenic
TTCCGTGTCGGCCAGGACTT+GGG 0.342804 4_2:+72031798 Msa0620500:CDS
ATTCCTACAACCCTGATATA+AGG 0.342845 4_2:-72032430 None:intergenic
CCAGAAGTATAAACAGCAAT+AGG 0.346443 4_2:-72033504 None:intergenic
TGGCCATGATGATGTCAAAA+AGG 0.353386 4_2:+72032915 Msa0620500:CDS
AACGGTTGTTATTCCTGCTT+TGG 0.353473 4_2:-72033884 None:intergenic
ACGAAGGTTGCTGGAGATAC+TGG 0.362908 4_2:+72031100 Msa0620500:CDS
GAATGCCAAGCTTCATTTAA+GGG 0.370794 4_2:+72036717 Msa0620500:three_prime_UTR
CTGTTTCGATGAGATCGCTT+GGG 0.370900 4_2:+72031182 Msa0620500:CDS
AGATCTCTGATTTGGGGTTA+GGG 0.372955 4_2:-72030664 None:intergenic
AAATATAGACGGAGCAATCT+TGG 0.375907 4_2:-72032893 None:intergenic
GATATTTGGGATTGTGAAGA+AGG 0.376760 4_2:-72030867 None:intergenic
CGGAGTTTAGAAGGAAGATC+AGG 0.377014 4_2:-72030925 None:intergenic
GAGGATGGTGTGGTTGGAGA+TGG 0.382041 4_2:-72030779 None:intergenic
GCTGTTTATACTTCTGGAAA+AGG 0.386854 4_2:+72033510 Msa0620500:CDS
CTTACAATTCTTACATATCA+AGG 0.387938 4_2:-72031762 None:intergenic
GTAAGGAAAGACATTGTTAC+CGG 0.388239 4_2:-72030836 None:intergenic
ACGGATAGAAGCAAGTTTCT+AGG 0.389472 4_2:-72032169 None:intergenic
ATGGGAAGAAGAAGAATAAG+AGG 0.390349 4_2:-72030597 None:intergenic
AACAATAAGCCACGGATCAA+TGG 0.390998 4_2:-72031986 None:intergenic
AGTTTGAAGACGAAGGTTGC+TGG 0.391003 4_2:+72031091 Msa0620500:CDS
CTGTTCCATGGCTTCATGAA+TGG 0.399516 4_2:-72033845 None:intergenic
GGAGCAGATCGGAGTTTAGA+AGG 0.399895 4_2:-72030934 None:intergenic
CCAGATGGGGTGAGATTAAG+AGG 0.400870 4_2:+72033074 Msa0620500:CDS
GATAAATCTCTCACCTGAAA+TGG 0.405703 4_2:+72035986 Msa0620500:CDS
CCTCTTAATCTCACCCCATC+TGG 0.406630 4_2:-72033074 None:intergenic
TGCTGGAGATACTGGTGATA+TGG 0.408690 4_2:+72031108 Msa0620500:CDS
TGAAGAAGGCTTTCTCTGTA+AGG 0.411037 4_2:-72030853 None:intergenic
TCAACATACTTGCTCTTGTC+GGG 0.412217 4_2:-72032009 None:intergenic
CAGCCTTATATCAGGGTTGT+AGG 0.413282 4_2:+72032427 Msa0620500:CDS
TGTTATTCCTGCTTTGGCTA+TGG 0.413969 4_2:-72033878 None:intergenic
GATATCAATGTGTTACTTCT+CGG 0.414213 4_2:+72033098 Msa0620500:CDS
GATGGTGTGGTTGGAGATGG+TGG 0.418214 4_2:-72030776 None:intergenic
AGGCGGCAAGCAAATGAAAC+TGG 0.418931 4_2:+72034902 Msa0620500:CDS
ATATCAATGTGTTACTTCTC+GGG 0.421636 4_2:+72033099 Msa0620500:CDS
ACAATGGATGCAGCTAAGTC+TGG 0.421713 4_2:+72035951 Msa0620500:CDS
TCAGTCTTCTTTCTGATATG+TGG 0.422676 4_2:-72036147 None:intergenic
TTCATCCGTAACTTTGAAAC+CGG 0.423579 4_2:+72030817 Msa0620500:CDS
TAACAACCGTTCTTAATTCA+AGG 0.424580 4_2:+72033896 Msa0620500:CDS
ATATCAACGAGAAGATATTT+GGG 0.427630 4_2:-72030880 None:intergenic
TGGTTTACACACCTATCTTC+TGG 0.427654 4_2:-72033748 None:intergenic
TGAAATGGCCCGTGAGATAC+AGG 0.429731 4_2:+72036001 Msa0620500:CDS
GTGCAACGAGGGGCGAGAAC+AGG 0.440941 4_2:+72034445 Msa0620500:CDS
TGTTACCGGTTTCAAAGTTA+CGG 0.442414 4_2:-72030822 None:intergenic
AAGTAGAGTACAAGCGAGAA+AGG 0.446154 4_2:+72036633 Msa0620500:CDS
ATTGATGATCTCGGCAGAAT+GGG 0.446684 4_2:+72036169 Msa0620500:CDS
CTTGAAGTTGCAAGAAAATC+CGG 0.449099 4_2:+72032041 Msa0620500:CDS
GGATATAGTTTGCTGTTCCA+TGG 0.450556 4_2:-72033857 None:intergenic
CGAAGCTTGTTAAAATTGCT+GGG 0.450647 4_2:+72031693 Msa0620500:CDS
GTTTGAAACTGCGGCGGCGC+AGG 0.452541 4_2:+72031060 Msa0620500:intron
TCCGTGTCGGCCAGGACTTG+GGG 0.453112 4_2:+72031799 Msa0620500:CDS
TAAAGAGAAGAATCGGGATT+GGG 0.454048 4_2:+72036122 Msa0620500:CDS
TCTTCTACATGATACCTAAT+GGG 0.456395 4_2:-72036696 None:intergenic
ACCAATTACTGTAAGGCAGC+TGG 0.457399 4_2:+72034940 Msa0620500:CDS
AGACACGGTGAAAAGCCTTA+TGG 0.460557 4_2:-72035928 None:intergenic
TGTACTCTACTTCGTCTCTC+TGG 0.460659 4_2:-72036622 None:intergenic
TCTAATGTCAATCTTATTGT+GGG 0.462673 4_2:+72036872 Msa0620500:three_prime_UTR
AATAGCTAGTCATATCATAA+AGG 0.465357 4_2:+72034407 Msa0620500:CDS
TTCATGTGATCATGTTCCTC+AGG 0.467813 4_2:+72031838 Msa0620500:CDS
GATTGATGATCTCGGCAGAA+TGG 0.467916 4_2:+72036168 Msa0620500:CDS
ATAAAGAGAAGAATCGGGAT+TGG 0.469531 4_2:+72036121 Msa0620500:CDS
TCTGTTTCGATGAGATCGCT+TGG 0.471927 4_2:+72031181 Msa0620500:CDS
ATCAACATACTTGCTCTTGT+CGG 0.473145 4_2:-72032010 None:intergenic
TCCTGCCGATATTCTTCCTC+TGG 0.474302 4_2:+72030954 Msa0620500:CDS
TGAAGGAGGAGCCATGGTCT+TGG 0.475981 4_2:+72033681 Msa0620500:CDS
CGCAGTGGGACCTCGAGACT+TGG 0.476032 4_2:-72032470 None:intergenic
GCAAGCAGCATTTGCCAGAT+GGG 0.480137 4_2:+72033060 Msa0620500:intron
ATAAGATGAGACCAGAAGAT+AGG 0.481347 4_2:+72033737 Msa0620500:CDS
GGTGGGAAAACTGACAAGTT+AGG 0.483332 4_2:-72036675 None:intergenic
ATCTAATGTCAATCTTATTG+TGG 0.484927 4_2:+72036871 Msa0620500:three_prime_UTR
GGCTTCTTGCACATTGTCCT+CGG 0.485618 4_2:-72035907 None:intergenic
AAGCAAGTTCCGTGTCGGCC+AGG 0.487155 4_2:+72031791 Msa0620500:CDS
ACAATAAGCCACGGATCAAT+GGG 0.489065 4_2:-72031985 None:intergenic
CAGAATGTACGAACAAGATA+AGG 0.491874 4_2:+72034150 Msa0620500:CDS
CAGGTGAGAGATTTATCTGT+TGG 0.492731 4_2:-72035980 None:intergenic
CGTCGTCCCATGAGTGTGCT+TGG 0.492954 4_2:-72030732 None:intergenic
AATTACCAGAGGAAGAATAT+CGG 0.493469 4_2:-72030959 None:intergenic
GGAAAAGTGTAGTGGGTGCG+TGG 0.495558 4_2:-72030547 None:intergenic
AGGGCGTTATGATGACCTTA+AGG 0.497343 4_2:+72033951 Msa0620500:CDS
TGCAAGCAGCATTTGCCAGA+TGG 0.508045 4_2:+72033059 Msa0620500:intron
GATATGTAAGAATTGTAAGA+AGG 0.509211 4_2:+72031766 Msa0620500:CDS
ATATGTAAGAATTGTAAGAA+GGG 0.510915 4_2:+72031767 Msa0620500:CDS
TCCATCTACTGCAAAGTCAC+AGG 0.516239 4_2:+72033124 Msa0620500:CDS
ATGGGACAAGGTTCTTCTCC+AGG 0.516636 4_2:-72031967 None:intergenic
TTCAGATAAAGAGAAGAATC+GGG 0.516845 4_2:+72036116 Msa0620500:CDS
AATAACTCGAAGAACTCAAT+CGG 0.517477 4_2:-72036743 None:intergenic
GGCTCAAGATTAACAATCGT+TGG 0.518736 4_2:+72032223 Msa0620500:CDS
ACGATTGTTAATCTTGAGCC+AGG 0.521348 4_2:-72032220 None:intergenic
CACTCATGGGACGACGGCCG+TGG 0.521865 4_2:+72030739 Msa0620500:CDS
GTGGTTGGAGATGGTGGCAT+CGG 0.523372 4_2:-72030770 None:intergenic
AACTCACGATGTAGAAGAGT+TGG 0.523786 4_2:-72032269 None:intergenic
CTGCAATACCAATTACTGTA+AGG 0.524353 4_2:+72034933 Msa0620500:CDS
TTTATTTGGAGGGTCGAGAA+AGG 0.525220 4_2:+72032951 Msa0620500:CDS
GGAAAAGGATCATCAGCTGC+TGG 0.525321 4_2:+72033525 Msa0620500:CDS
AATTGCTGCATCGAGGACTA+AGG 0.527556 4_2:+72031721 Msa0620500:CDS
ACAGCGACCAAGCACACTCA+TGG 0.529247 4_2:+72030725 Msa0620500:CDS
AGAAGACTGATTGATGATCT+CGG 0.532446 4_2:+72036160 Msa0620500:CDS
AGGAAGAAAATTGGCTGAAG+AGG 0.535236 4_2:+72034481 Msa0620500:CDS
GGTCATCATAACGCCCTGAT+GGG 0.536805 4_2:-72033945 None:intergenic
AGGTCATCATAACGCCCTGA+TGG 0.538183 4_2:-72033946 None:intergenic
CTTGTTCAAACTGTAGTGCC+TGG 0.539191 4_2:+72032202 Msa0620500:CDS
GGCAGCTGGAAGCTATTGTA+AGG 0.539565 4_2:+72034954 Msa0620500:CDS
ACAATGTGCAAGAAGCCATA+AGG 0.541102 4_2:+72035913 Msa0620500:CDS
GGAGCCATGGTCTTGGCAGA+TGG 0.545202 4_2:+72033688 Msa0620500:CDS
TTTCTAGGAAGCTCTCCAGT+TGG 0.550986 4_2:-72032154 None:intergenic
ACTATATCCATAGCCAAAGC+AGG 0.554265 4_2:+72033871 Msa0620500:CDS
TCACGATGTAGAAGAGTTGG+AGG 0.555343 4_2:-72032266 None:intergenic
GATATGGAAGATGCTGCTCC+TGG 0.556873 4_2:+72031124 Msa0620500:CDS
TCTTCATTTGTAAACGCAGT+GGG 0.560112 4_2:-72032484 None:intergenic
AGTTAGACAGCCTTATATCA+GGG 0.561967 4_2:+72032420 Msa0620500:CDS
CGACCCTCCAAATAAAAGAC+AGG 0.564378 4_2:-72032944 None:intergenic
TGAATGCCACCCTCGTCTAT+CGG 0.564691 4_2:+72034608 Msa0620500:CDS
ACCAGAGGAAGAATATCGGC+AGG 0.566555 4_2:-72030955 None:intergenic
TTATCTTGAAGGAGGAGCCA+TGG 0.566964 4_2:+72033675 Msa0620500:CDS
TTTGGTGAGTTTGAAGACGA+AGG 0.568540 4_2:+72031084 Msa0620500:CDS
GAACAGGACTCCCGTTTCCA+AGG 0.569413 4_2:+72034461 Msa0620500:CDS
CACGACAAACCTGTATCTCA+CGG 0.571503 4_2:-72036010 None:intergenic
GGATGCCCTTAAATGAAGCT+TGG 0.572015 4_2:-72036722 None:intergenic
AGGGTTGTAGGAATAGAAGA+TGG 0.573206 4_2:+72032439 Msa0620500:CDS
TTCATCAGCTAGTGCAACGA+GGG 0.574875 4_2:+72034434 Msa0620500:CDS
TGGCATCGGTTTCGCCGCCA+CGG 0.575788 4_2:-72030756 None:intergenic
AAGAAGAAGAATAAGAGGGA+GGG 0.579155 4_2:-72030592 None:intergenic
TGTTTCGATGAGATCGCTTG+GGG 0.579790 4_2:+72031183 Msa0620500:CDS
GATTCTTCTTACTTCTAAGG+AGG 0.580034 4_2:+72031156 Msa0620500:CDS
TCATGGGACGACGGCCGTGG+CGG 0.583602 4_2:+72030742 Msa0620500:CDS
GAAAAGTGTAGTGGGTGCGT+GGG 0.585703 4_2:-72030546 None:intergenic
TTTGGCGGGAATGTTGTGGC+GGG 0.587640 4_2:-72030568 None:intergenic
TAGTGGGTGCGTGGGAGCGT+AGG 0.588934 4_2:-72030538 None:intergenic
TGGGAAGAAGAAGAATAAGA+GGG 0.590980 4_2:-72030596 None:intergenic
AGAAGAATCTGAACATCACC+AGG 0.592820 4_2:-72031142 None:intergenic
GAAGAAGAAGAATAAGAGGG+AGG 0.595697 4_2:-72030593 None:intergenic
TAATTATGTGAATATCAGAC+AGG 0.597312 4_2:+72034656 Msa0620500:CDS
AGCAAATGAAACTGGAGAAG+CGG 0.600677 4_2:+72034910 Msa0620500:CDS
CAAGCAGCATTTGCCAGATG+GGG 0.602806 4_2:+72033061 Msa0620500:intron
TCTACATGATACCTAATGGG+TGG 0.604704 4_2:-72036693 None:intergenic
CAGCGACCAAGCACACTCAT+GGG 0.605684 4_2:+72030726 Msa0620500:CDS
AGAAGTCCTTGAATTAAGAA+CGG 0.607422 4_2:-72033902 None:intergenic
GGTTGCCATTCATGAAGCCA+TGG 0.607570 4_2:+72033840 Msa0620500:CDS
CTACATGATACCTAATGGGT+GGG 0.608345 4_2:-72036692 None:intergenic
TTCTTCATTTGTAAACGCAG+TGG 0.608401 4_2:-72032485 None:intergenic
GTCATCATAACGCCCTGATG+GGG 0.610509 4_2:-72033944 None:intergenic
AAAATGTCAGGTTGGGACGA+AGG 0.611384 4_2:+72030691 Msa0620500:exon
CCGTGTCGGCCAGGACTTGG+GGG 0.613588 4_2:+72031800 Msa0620500:CDS
AACCTTGTCCCATTGATCCG+TGG 0.613642 4_2:+72031977 Msa0620500:CDS
TATGTAAGAATTGTAAGAAG+GGG 0.613683 4_2:+72031768 Msa0620500:CDS
GCCATGGTCTTGGCAGATGG+AGG 0.614872 4_2:+72033691 Msa0620500:CDS
ACGACAAACCTGTATCTCAC+GGG 0.614925 4_2:-72036009 None:intergenic
ACCTCCATCTGCCAAGACCA+TGG 0.616041 4_2:-72033692 None:intergenic
GAATATCGGCAGGAGCAGAT+CGG 0.620076 4_2:-72030945 None:intergenic
AATGTTTCTCCAGACTGCAC+AGG 0.622699 4_2:+72034063 Msa0620500:intron
TTGTGGCGGGAAAAGTGTAG+TGG 0.625630 4_2:-72030555 None:intergenic
AGCTGCATCCATTGTAGACA+CGG 0.626896 4_2:-72035943 None:intergenic
TTGAACAAGATGTCGATCAA+CGG 0.632238 4_2:-72032188 None:intergenic
AACCATGTACTCCAAAACCA+TGG 0.632906 4_2:+72036842 Msa0620500:three_prime_UTR
GCTAACATCGAGTCTTACAA+AGG 0.634962 4_2:-72036783 None:intergenic
TCATCATGGCCAAATATAGA+CGG 0.635047 4_2:-72032904 None:intergenic
CAAGCACACTCATGGGACGA+CGG 0.635542 4_2:+72030733 Msa0620500:CDS
TCATCATAACGCCCTGATGG+GGG 0.637899 4_2:-72033943 None:intergenic
TATCGGAAGCTGCAGCAACA+AGG 0.639095 4_2:+72034625 Msa0620500:CDS
CGTGGGAGCGTAGGATATCG+TGG 0.642852 4_2:-72030529 None:intergenic
AGGGGAAGCAAGTTCCGTGT+CGG 0.645373 4_2:+72031786 Msa0620500:CDS
TCTCTGGTGCATGATTAGAA+GGG 0.649766 4_2:-72036606 None:intergenic
TTTGTAGTTTGAAACTGCGG+CGG 0.651828 4_2:+72031054 Msa0620500:intron
TTGTCGGGAACAATAAGCCA+CGG 0.652093 4_2:-72031994 None:intergenic
TATCAATGTGTTACTTCTCG+GGG 0.652386 4_2:+72033100 Msa0620500:CDS
CTAATGTCAATCTTATTGTG+GGG 0.655683 4_2:+72036873 Msa0620500:three_prime_UTR
GGAAATGAAGCCAAGTCTCG+AGG 0.655979 4_2:+72032460 Msa0620500:CDS
GCTGCAGCTTCCGATAGACG+AGG 0.659463 4_2:-72034618 None:intergenic
GGAGTTTAGAAGGAAGATCA+GGG 0.662361 4_2:-72030924 None:intergenic
CAGATCTAATCATGCTACCG+AGG 0.663347 4_2:+72035890 Msa0620500:intron
ATGTCAGGTTGGGACGAAGG+AGG 0.674877 4_2:+72030694 Msa0620500:CDS
CTGCAGCTTCCGATAGACGA+GGG 0.675030 4_2:-72034617 None:intergenic
TGTGGCGGGAAAAGTGTAGT+GGG 0.681312 4_2:-72030554 None:intergenic
CTTGGATTACAGAGGCTGTG+AGG 0.684123 4_2:-72033548 None:intergenic
TTGATGATCTCGGCAGAATG+GGG 0.686544 4_2:+72036170 Msa0620500:CDS
ATTCATCAGCTAGTGCAACG+AGG 0.690555 4_2:+72034433 Msa0620500:CDS
GCTGCTATCTTGGATTACAG+AGG 0.692274 4_2:-72033556 None:intergenic
AGCCACGGATCAATGGGACA+AGG 0.695865 4_2:-72031979 None:intergenic
GGATAACAATTGCTGCATCG+AGG 0.699806 4_2:+72031714 Msa0620500:CDS
TCATCAGCTAGTGCAACGAG+GGG 0.709012 4_2:+72034435 Msa0620500:CDS
CAGCTTCCGATAGACGAGGG+TGG 0.710744 4_2:-72034614 None:intergenic
GGAACATGATCACATGAACG+TGG 0.719167 4_2:-72031833 None:intergenic
GAAGTTGCAAGAAAATCCGG+AGG 0.735071 4_2:+72032044 Msa0620500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTCACAAATTATTAT+TGG + chr4_2:72031350-72031369 Msa0620500:intron 10.0%
!!! ATTTAATTATTTTTAAACCT+AGG + chr4_2:72032740-72032759 Msa0620500:intron 10.0%
!!! TATTTTATTTTTTTCTTCTG+TGG - chr4_2:72030636-72030655 None:intergenic 15.0%
!!! ATTTTTAAACCAACTTTATT+AGG + chr4_2:72032626-72032645 Msa0620500:intron 15.0%
!!! TGGAAAAATAATTACATTTT+TGG - chr4_2:72033300-72033319 None:intergenic 15.0%
!! AAAAAAAAAAAAAAAGAGAG+AGG - chr4_2:72033996-72034015 None:intergenic 15.0%
!!! CTAGATAATTTTTTCAAAAA+AGG - chr4_2:72034238-72034257 None:intergenic 15.0%
!! ATGTAAAATATATTTATGCA+TGG - chr4_2:72034330-72034349 None:intergenic 15.0%
!!! TAAATTTTTTTCACAAGAAA+AGG - chr4_2:72034875-72034894 None:intergenic 15.0%
!!! TTTTCTTGTGAAAAAAATTT+AGG + chr4_2:72034874-72034893 Msa0620500:intron 15.0%
!! TTAAAAAAAGACTTGTAAAA+AGG + chr4_2:72035554-72035573 Msa0620500:intron 15.0%
!! TAAAAAAAGACTTGTAAAAA+GGG + chr4_2:72035555-72035574 Msa0620500:intron 15.0%
!!! TTTTGTATATCTATATCAAT+TGG + chr4_2:72035640-72035659 Msa0620500:intron 15.0%
!!! TAAAAGATACACATTTTAAA+CGG + chr4_2:72036291-72036310 Msa0620500:intron 15.0%
!! TATAATTCAAGAGAAAAAAA+AGG - chr4_2:72036487-72036506 None:intergenic 15.0%
!!! TTTTTTTAGATCTCTGATTT+GGG - chr4_2:72030674-72030693 None:intergenic 20.0%
!!! TTTTTTTTAGATCTCTGATT+TGG - chr4_2:72030675-72030694 None:intergenic 20.0%
!!! CTTATTTAATTTTGAGCATT+TGG + chr4_2:72031573-72031592 Msa0620500:intron 20.0%
!!! TATCTTTTTATCATTTTCGT+AGG + chr4_2:72031658-72031677 Msa0620500:intron 20.0%
!! ATATGTAAGAATTGTAAGAA+GGG + chr4_2:72031767-72031786 Msa0620500:CDS 20.0%
!! TATACATTTGATATGACAAA+AGG + chr4_2:72032073-72032092 Msa0620500:intron 20.0%
!!! GTTTAAAAATTTAGTTTCAC+GGG - chr4_2:72032616-72032635 None:intergenic 20.0%
!!! GGTTTAAAAATTTAGTTTCA+CGG - chr4_2:72032617-72032636 None:intergenic 20.0%
!! AATCTAAGCATTATTATATG+TGG - chr4_2:72033323-72033342 None:intergenic 20.0%
!!! TCTATTTTTACAATTTAGCT+TGG + chr4_2:72033373-72033392 Msa0620500:intron 20.0%
!!! TGAAAAAAATTTAGGATATG+AGG + chr4_2:72034882-72034901 Msa0620500:intron 20.0%
!! AAAGAAAGACATTGAAATTA+GGG - chr4_2:72035434-72035453 None:intergenic 20.0%
!! AAAAGAAAGACATTGAAATT+AGG - chr4_2:72035435-72035454 None:intergenic 20.0%
!! GAAAAAATGTCTTATATTCA+TGG + chr4_2:72035590-72035609 Msa0620500:intron 20.0%
!! GTTCAATAATTCAATAGTTA+TGG + chr4_2:72035662-72035681 Msa0620500:intron 20.0%
!!! TTTTAAAAGTTTGAACCAAA+TGG - chr4_2:72036276-72036295 None:intergenic 20.0%
!!! AAAAGATACACATTTTAAAC+GGG + chr4_2:72036292-72036311 Msa0620500:intron 20.0%
!!! TTCTGTAGTCTAAATATTTT+TGG - chr4_2:72036376-72036395 None:intergenic 20.0%
!!! ATATATACATGTAAGCTTTT+GGG - chr4_2:72036537-72036556 None:intergenic 20.0%
!!! AATATATACATGTAAGCTTT+TGG - chr4_2:72036538-72036557 None:intergenic 20.0%
!! TTCATATATAACAACATTTC+AGG + chr4_2:72036574-72036593 Msa0620500:intron 20.0%
!!! TTTTTTTCTTCTGTGGTTTT+GGG - chr4_2:72030629-72030648 None:intergenic 25.0%
!!! ATTTTTTTCTTCTGTGGTTT+TGG - chr4_2:72030630-72030649 None:intergenic 25.0%
!!! TTTTTTAGATCTCTGATTTG+GGG - chr4_2:72030673-72030692 None:intergenic 25.0%
! AGAGATCTAAAAAAAATGTC+AGG + chr4_2:72030679-72030698 Msa0620500:exon 25.0%
! ATCTAAAAAAAATGTCAGGT+TGG + chr4_2:72030683-72030702 Msa0620500:exon 25.0%
! TCTAAAAAAAATGTCAGGTT+GGG + chr4_2:72030684-72030703 Msa0620500:exon 25.0%
!!! TGAATTCTTTGAATTTTTGG+AGG - chr4_2:72030801-72030820 None:intergenic 25.0%
!! GGATGAATTCTTTGAATTTT+TGG - chr4_2:72030804-72030823 None:intergenic 25.0%
! ATATCAACGAGAAGATATTT+GGG - chr4_2:72030883-72030902 None:intergenic 25.0%
! AAATCAACAAATTCATCAAC+TGG - chr4_2:72031006-72031025 None:intergenic 25.0%
!!! TTTTTTGTAGTTTGAAACTG+CGG + chr4_2:72031051-72031070 Msa0620500:intron 25.0%
! TTGTGTTTATGAAGTTGTTT+AGG + chr4_2:72031226-72031245 Msa0620500:intron 25.0%
! TGTGTTTATGAAGTTGTTTA+GGG + chr4_2:72031227-72031246 Msa0620500:intron 25.0%
! CAGATATCAAATATCTCAAT+TGG - chr4_2:72031263-72031282 None:intergenic 25.0%
! CTTACAATTCTTACATATCA+AGG - chr4_2:72031765-72031784 None:intergenic 25.0%
! GATATGTAAGAATTGTAAGA+AGG + chr4_2:72031766-72031785 Msa0620500:CDS 25.0%
! TATGTAAGAATTGTAAGAAG+GGG + chr4_2:72031768-72031787 Msa0620500:CDS 25.0%
!!! TTCTTTATTTTGCGTTTTTG+AGG + chr4_2:72031908-72031927 Msa0620500:intron 25.0%
!! TGGAATCTATAGTATTTTTC+AGG + chr4_2:72032243-72032262 Msa0620500:CDS 25.0%
!! TGAATACTCATGTATTTTGT+TGG + chr4_2:72032988-72033007 Msa0620500:intron 25.0%
! AAATATCCAAACTTTCAACA+TGG + chr4_2:72033011-72033030 Msa0620500:intron 25.0%
!!! TTTGCATTTTTCCTTTAGAA+TGG + chr4_2:72033218-72033237 Msa0620500:intron 25.0%
!!! ATTTTTACAATTTAGCTTGG+CGG + chr4_2:72033376-72033395 Msa0620500:intron 25.0%
!! CTTTGGTAATTTATCATTGT+TGG + chr4_2:72033783-72033802 Msa0620500:intron 25.0%
!! TTTCACTGTATCTTTTATGT+AGG + chr4_2:72033818-72033837 Msa0620500:intron 25.0%
!! TTCACTGTATCTTTTATGTA+GGG + chr4_2:72033819-72033838 Msa0620500:intron 25.0%
! AAAAAAAAAAAGAGAGAGGA+GGG - chr4_2:72033992-72034011 None:intergenic 25.0%
! AAAAAAAAAAAAGAGAGAGG+AGG - chr4_2:72033993-72034012 None:intergenic 25.0%
! AATAGCTAGTCATATCATAA+AGG + chr4_2:72034407-72034426 Msa0620500:CDS 25.0%
! CTTTGAGCTGTTATATAAAT+AGG + chr4_2:72034565-72034584 Msa0620500:intron 25.0%
! TAATTATGTGAATATCAGAC+AGG + chr4_2:72034656-72034675 Msa0620500:CDS 25.0%
! ATGACATCCAACAATAAAAA+AGG - chr4_2:72034785-72034804 None:intergenic 25.0%
! TTTATTAGTTCAGCATTCAA+AGG - chr4_2:72034824-72034843 None:intergenic 25.0%
!! AAAAAATTTAGGATATGAGG+CGG + chr4_2:72034885-72034904 Msa0620500:intron 25.0%
!! AATTTTTATGAAAATGCACC+AGG - chr4_2:72035055-72035074 None:intergenic 25.0%
! AGATAAGTAATGTAAGTATG+AGG - chr4_2:72035185-72035204 None:intergenic 25.0%
! TGATAAGGTCATAATGAAAT+CGG - chr4_2:72035256-72035275 None:intergenic 25.0%
!! ATAACTCATATAACTTGTCA+TGG + chr4_2:72035291-72035310 Msa0620500:intron 25.0%
!! ATAACTCATATAACTTGTCA+TGG + chr4_2:72035291-72035310 Msa0620500:intron 25.0%
!!! TTCTTTTTTCTTGTGAAGAT+TGG - chr4_2:72035471-72035490 None:intergenic 25.0%
!! CCTTAAAAGCTTATGTTTTT+GGG + chr4_2:72035696-72035715 Msa0620500:intron 25.0%
!! ATTAAGGATTTTACATGCAA+TGG - chr4_2:72035735-72035754 None:intergenic 25.0%
! TCTTTAAGCAATGCATATTA+AGG - chr4_2:72035751-72035770 None:intergenic 25.0%
! GCATTATGACAAAAAAATCA+TGG - chr4_2:72035849-72035868 None:intergenic 25.0%
!! AAAGATACACATTTTAAACG+GGG + chr4_2:72036293-72036312 Msa0620500:intron 25.0%
! ATCTAATGTCAATCTTATTG+TGG + chr4_2:72036871-72036890 Msa0620500:three_prime_UTR 25.0%
! TCTAATGTCAATCTTATTGT+GGG + chr4_2:72036872-72036891 Msa0620500:three_prime_UTR 25.0%
!!! TTTTTTCTTCTGTGGTTTTG+GGG - chr4_2:72030628-72030647 None:intergenic 30.0%
!! TTCTTTGAATTTTTGGAGGA+TGG - chr4_2:72030797-72030816 None:intergenic 30.0%
CATATCAACGAGAAGATATT+TGG - chr4_2:72030884-72030903 None:intergenic 30.0%
CAAATATCTTCTCGTTGATA+TGG + chr4_2:72030882-72030901 Msa0620500:CDS 30.0%
AATTACCAGAGGAAGAATAT+CGG - chr4_2:72030962-72030981 None:intergenic 30.0%
AGTTTAGAAGAAATTACCAG+AGG - chr4_2:72030973-72030992 None:intergenic 30.0%
TCAGATTCTTCTTACTTCTA+AGG + chr4_2:72031153-72031172 Msa0620500:CDS 30.0%
! CACACTTCAATTAAAAGTGT+CGG - chr4_2:72031291-72031310 None:intergenic 30.0%
!! ACTTTTAATTGAAGTGTGAC+CGG + chr4_2:72031293-72031312 Msa0620500:intron 30.0%
ATTATTGAAACTCAAGTGCT+TGG + chr4_2:72031443-72031462 Msa0620500:intron 30.0%
TTATTGAAACTCAAGTGCTT+GGG + chr4_2:72031444-72031463 Msa0620500:intron 30.0%
! AGCATAATCAACTTGTTTCA+TGG - chr4_2:72031496-72031515 None:intergenic 30.0%
TTGTCTTTCTTTCAAGAGAT+TGG + chr4_2:72031609-72031628 Msa0620500:intron 30.0%
TCAAGAGATTGGTATATTTG+AGG + chr4_2:72031620-72031639 Msa0620500:intron 30.0%
GATGTCTCTTACATGATAAA+AGG + chr4_2:72031930-72031949 Msa0620500:intron 30.0%
!!! AAGGTTTTTTTTTTGTAGCC+TGG + chr4_2:72031949-72031968 Msa0620500:intron 30.0%
CAAATGTATATTACTACCTC+CGG - chr4_2:72032063-72032082 None:intergenic 30.0%
TAATCATGACATCTTTATGC+TGG + chr4_2:72032116-72032135 Msa0620500:intron 30.0%
TATTGACATCAACTGTAGAT+TGG - chr4_2:72032357-72032376 None:intergenic 30.0%
! CAAAGTAGTCAATTGATAGT+TGG - chr4_2:72032522-72032541 None:intergenic 30.0%
TACTTTGCTTTATACCTTGT+TGG + chr4_2:72032535-72032554 Msa0620500:intron 30.0%
CTAAAACGTGATATTAAAGG+AGG - chr4_2:72032564-72032583 None:intergenic 30.0%
CAGCTAAAACGTGATATTAA+AGG - chr4_2:72032567-72032586 None:intergenic 30.0%
CACTGATAACCTAATAAAGT+TGG - chr4_2:72032638-72032657 None:intergenic 30.0%
TAGAACTGAGAAATCATAGA+CGG - chr4_2:72032698-72032717 None:intergenic 30.0%
!! GATATCAATGTGTTACTTCT+CGG + chr4_2:72033098-72033117 Msa0620500:CDS 30.0%
!! ATATCAATGTGTTACTTCTC+GGG + chr4_2:72033099-72033118 Msa0620500:CDS 30.0%
! TTTGCAATTTTCCTTTAGAC+TGG + chr4_2:72033154-72033173 Msa0620500:intron 30.0%
TAACTAAAGAACCAGTCTAA+AGG - chr4_2:72033168-72033187 None:intergenic 30.0%
!! TTTCCTTTAGAATGGTTCTT+TGG + chr4_2:72033226-72033245 Msa0620500:intron 30.0%
TAACCAAAGAACCATTCTAA+AGG - chr4_2:72033232-72033251 None:intergenic 30.0%
CTAAGCATTATTATATGTGG+TGG - chr4_2:72033320-72033339 None:intergenic 30.0%
GCAAACAATGCATTAAGTAA+AGG - chr4_2:72033591-72033610 None:intergenic 30.0%
ACTTAATGCATTGTTTGCAT+TGG + chr4_2:72033593-72033612 Msa0620500:intron 30.0%
AACCATTTCTTGTTACTCTT+TGG + chr4_2:72033766-72033785 Msa0620500:intron 30.0%
TACCAAAGAGTAACAAGAAA+TGG - chr4_2:72033771-72033790 None:intergenic 30.0%
TAACAACCGTTCTTAATTCA+AGG + chr4_2:72033896-72033915 Msa0620500:CDS 30.0%
AGAAGTCCTTGAATTAAGAA+CGG - chr4_2:72033905-72033924 None:intergenic 30.0%
ATATATAGCAGTTGACCTTA+AGG - chr4_2:72033969-72033988 None:intergenic 30.0%
TACAGACAACTATTCTTTCT+AGG + chr4_2:72034098-72034117 Msa0620500:CDS 30.0%
!! TTAGTAGTTGATGATGATGT+TGG + chr4_2:72034743-72034762 Msa0620500:intron 30.0%
ATAAAAAAGGCAAAACCGAT+CGG - chr4_2:72034772-72034791 None:intergenic 30.0%
!! GGTTTTGCCTTTTTTATTGT+TGG + chr4_2:72034775-72034794 Msa0620500:intron 30.0%
! TATCGCTGTTATTCTTTTCT+GGG + chr4_2:72035011-72035030 Msa0620500:intron 30.0%
CACAGACTGATATAGATTAT+AGG + chr4_2:72035081-72035100 Msa0620500:intron 30.0%
AGACTGATATAGATTATAGG+AGG + chr4_2:72035084-72035103 Msa0620500:intron 30.0%
GTCACATAGTCTGATTAATA+TGG + chr4_2:72035109-72035128 Msa0620500:intron 30.0%
TGAGTTATCCATGAATTAGT+CGG - chr4_2:72035336-72035355 None:intergenic 30.0%
AATAATTACAAGGGCAATCT+TGG - chr4_2:72035407-72035426 None:intergenic 30.0%
TAGGGTGACAATAATTACAA+GGG - chr4_2:72035416-72035435 None:intergenic 30.0%
TTAGGGTGACAATAATTACA+AGG - chr4_2:72035417-72035436 None:intergenic 30.0%
! GCCTTAAAAGCTTATGTTTT+TGG + chr4_2:72035695-72035714 Msa0620500:intron 30.0%
! CCCAAAAACATAAGCTTTTA+AGG - chr4_2:72035699-72035718 None:intergenic 30.0%
CTGGTAAGAGTTAATTAAAG+AGG - chr4_2:72035873-72035892 None:intergenic 30.0%
! TTCTCTTTTTCCTTCCATAT+AGG + chr4_2:72036045-72036064 Msa0620500:intron 30.0%
ATCAGCATATGAAACCTATA+TGG - chr4_2:72036062-72036081 None:intergenic 30.0%
GTTCAGATAAAGAGAAGAAT+CGG + chr4_2:72036115-72036134 Msa0620500:CDS 30.0%
TTCAGATAAAGAGAAGAATC+GGG + chr4_2:72036116-72036135 Msa0620500:CDS 30.0%
! ATTTTAAACGGGGTTATGTT+GGG + chr4_2:72036303-72036322 Msa0620500:intron 30.0%
!!! AACAGTTTTGAACAGTGTTA+CGG - chr4_2:72036441-72036460 None:intergenic 30.0%
TCTTCTACATGATACCTAAT+GGG - chr4_2:72036699-72036718 None:intergenic 30.0%
TTCTTCTACATGATACCTAA+TGG - chr4_2:72036700-72036719 None:intergenic 30.0%
AATAACTCGAAGAACTCAAT+CGG - chr4_2:72036746-72036765 None:intergenic 30.0%
! TGAGTTCTTCGAGTTATTTA+AGG + chr4_2:72036748-72036767 Msa0620500:three_prime_UTR 30.0%
! TAGATTCTTTTCCATGGTTT+TGG - chr4_2:72036856-72036875 None:intergenic 30.0%
! TGACATTAGATTCTTTTCCA+TGG - chr4_2:72036862-72036881 None:intergenic 30.0%
CTAATGTCAATCTTATTGTG+GGG + chr4_2:72036873-72036892 Msa0620500:three_prime_UTR 30.0%
AAGAAGAAGAATAAGAGGGA+GGG - chr4_2:72030595-72030614 None:intergenic 35.0%
TGGGAAGAAGAAGAATAAGA+GGG - chr4_2:72030599-72030618 None:intergenic 35.0%
ATGGGAAGAAGAAGAATAAG+AGG - chr4_2:72030600-72030619 None:intergenic 35.0%
!! TTCATCCGTAACTTTGAAAC+CGG + chr4_2:72030817-72030836 Msa0620500:CDS 35.0%
!! TGTTACCGGTTTCAAAGTTA+CGG - chr4_2:72030825-72030844 None:intergenic 35.0%
GTAAGGAAAGACATTGTTAC+CGG - chr4_2:72030839-72030858 None:intergenic 35.0%
! GATATTTGGGATTGTGAAGA+AGG - chr4_2:72030870-72030889 None:intergenic 35.0%
! GATTCTTCTTACTTCTAAGG+AGG + chr4_2:72031156-72031175 Msa0620500:CDS 35.0%
!! ACTTCAATTAAAAGTGTCGG+TGG - chr4_2:72031288-72031307 None:intergenic 35.0%
TATTGAAACTCAAGTGCTTG+GGG + chr4_2:72031445-72031464 Msa0620500:intron 35.0%
! AGATATTTGCTAGTTGCAAC+AGG + chr4_2:72031539-72031558 Msa0620500:intron 35.0%
!! TCGAAGCTTGTTAAAATTGC+TGG + chr4_2:72031692-72031711 Msa0620500:CDS 35.0%
!! CGAAGCTTGTTAAAATTGCT+GGG + chr4_2:72031693-72031712 Msa0620500:CDS 35.0%
!!! GTCTTTTGCTTATTTTGCAG+TGG + chr4_2:72031874-72031893 Msa0620500:intron 35.0%
ATCAACATACTTGCTCTTGT+CGG - chr4_2:72032013-72032032 None:intergenic 35.0%
CTTGAAGTTGCAAGAAAATC+CGG + chr4_2:72032041-72032060 Msa0620500:CDS 35.0%
!!! ATCTTTATGCTGGCTTTTGA+AGG + chr4_2:72032126-72032145 Msa0620500:intron 35.0%
TTGAACAAGATGTCGATCAA+CGG - chr4_2:72032191-72032210 None:intergenic 35.0%
! TGTGTTTTATGCAGCAACAA+AGG + chr4_2:72032388-72032407 Msa0620500:intron 35.0%
! AGTTAGACAGCCTTATATCA+GGG + chr4_2:72032420-72032439 Msa0620500:CDS 35.0%
ATTCCTACAACCCTGATATA+AGG - chr4_2:72032433-72032452 None:intergenic 35.0%
TCTTCATTTGTAAACGCAGT+GGG - chr4_2:72032487-72032506 None:intergenic 35.0%
TTCTTCATTTGTAAACGCAG+TGG - chr4_2:72032488-72032507 None:intergenic 35.0%
GTGAATGTTAACAGTGTTTG+TGG + chr4_2:72032588-72032607 Msa0620500:intron 35.0%
! AGACGGTATCTAGTATTGAA+AGG - chr4_2:72032681-72032700 None:intergenic 35.0%
TAGGAATGAAAATTCAGCCT+AGG - chr4_2:72032760-72032779 None:intergenic 35.0%
GATGAGGAATATGTAACAGT+AGG - chr4_2:72032779-72032798 None:intergenic 35.0%
AAGATACCATTATTAGCACC+AGG - chr4_2:72032812-72032831 None:intergenic 35.0%
AAATATAGACGGAGCAATCT+TGG - chr4_2:72032896-72032915 None:intergenic 35.0%
AAGATTGCTCCGTCTATATT+TGG + chr4_2:72032895-72032914 Msa0620500:CDS 35.0%
TCATCATGGCCAAATATAGA+CGG - chr4_2:72032907-72032926 None:intergenic 35.0%
! TAGCCTTTTTGACATCATCA+TGG - chr4_2:72032921-72032940 None:intergenic 35.0%
! TGATGATGTCAAAAAGGCTA+TGG + chr4_2:72032921-72032940 Msa0620500:CDS 35.0%
!! TATCAATGTGTTACTTCTCG+GGG + chr4_2:72033100-72033119 Msa0620500:CDS 35.0%
!! TTAAAAACAAGTGCCACTTG+TGG + chr4_2:72033271-72033290 Msa0620500:intron 35.0%
!! ACATTTTTGGATACCACAAG+TGG - chr4_2:72033287-72033306 None:intergenic 35.0%
CTACGATGCGAATGAAATAA+TGG - chr4_2:72033417-72033436 None:intergenic 35.0%
AACTGTAAAATGTAACCGTC+AGG - chr4_2:72033459-72033478 None:intergenic 35.0%
! CCAGAAGTATAAACAGCAAT+AGG - chr4_2:72033507-72033526 None:intergenic 35.0%
!! CCTATTGCTGTTTATACTTC+TGG + chr4_2:72033504-72033523 Msa0620500:CDS 35.0%
! GCTGTTTATACTTCTGGAAA+AGG + chr4_2:72033510-72033529 Msa0620500:CDS 35.0%
ATAAGATGAGACCAGAAGAT+AGG + chr4_2:72033737-72033756 Msa0620500:CDS 35.0%
CAGAATGTACGAACAAGATA+AGG + chr4_2:72034150-72034169 Msa0620500:CDS 35.0%
!!! TTCGATAGTTTTCAAGTCAG+TGG + chr4_2:72034361-72034380 Msa0620500:intron 35.0%
! CAATTTTCTTCCTTGGAAAC+GGG - chr4_2:72034474-72034493 None:intergenic 35.0%
! CCAATTTTCTTCCTTGGAAA+CGG - chr4_2:72034475-72034494 None:intergenic 35.0%
CTAATAACCATATCGAGACT+AGG - chr4_2:72034727-72034746 None:intergenic 35.0%
CTGCAATACCAATTACTGTA+AGG + chr4_2:72034933-72034952 Msa0620500:CDS 35.0%
! GTATCGCTGTTATTCTTTTC+TGG + chr4_2:72035010-72035029 Msa0620500:intron 35.0%
! TTTTATGAAAATGCACCAGG+AGG - chr4_2:72035052-72035071 None:intergenic 35.0%
ATGTGTCTCAATGTACAGTA+AGG - chr4_2:72035161-72035180 None:intergenic 35.0%
CCATGAATTCAGATGTGATA+AGG - chr4_2:72035271-72035290 None:intergenic 35.0%
CCTTATCACATCTGAATTCA+TGG + chr4_2:72035268-72035287 Msa0620500:intron 35.0%
! CAAATATGCCGACTAATTCA+TGG + chr4_2:72035325-72035344 Msa0620500:intron 35.0%
GATAAATCTCTCACCTGAAA+TGG + chr4_2:72035986-72036005 Msa0620500:CDS 35.0%
GCATATGAAACCTATATGGA+AGG - chr4_2:72036058-72036077 None:intergenic 35.0%
ATAAAGAGAAGAATCGGGAT+TGG + chr4_2:72036121-72036140 Msa0620500:CDS 35.0%
TAAAGAGAAGAATCGGGATT+GGG + chr4_2:72036122-72036141 Msa0620500:CDS 35.0%
TCAGTCTTCTTTCTGATATG+TGG - chr4_2:72036150-72036169 None:intergenic 35.0%
! AGAAGACTGATTGATGATCT+CGG + chr4_2:72036160-72036179 Msa0620500:CDS 35.0%
! CATTTTAAACGGGGTTATGT+TGG + chr4_2:72036302-72036321 Msa0620500:intron 35.0%
AGAATGCCAAGCTTCATTTA+AGG + chr4_2:72036716-72036735 Msa0620500:three_prime_UTR 35.0%
GAATGCCAAGCTTCATTTAA+GGG + chr4_2:72036717-72036736 Msa0620500:three_prime_UTR 35.0%
! AAGAATAAGAGGGAGGGTTT+TGG - chr4_2:72030589-72030608 None:intergenic 40.0%
GAAGAAGAAGAATAAGAGGG+AGG - chr4_2:72030596-72030615 None:intergenic 40.0%
!!! TGTGGTTTTGGGGAAGAAAT+GGG - chr4_2:72030618-72030637 None:intergenic 40.0%
!! AGATCTCTGATTTGGGGTTA+GGG - chr4_2:72030667-72030686 None:intergenic 40.0%
!! TAGATCTCTGATTTGGGGTT+AGG - chr4_2:72030668-72030687 None:intergenic 40.0%
!! TGAATTTTTGGAGGATGGTG+TGG - chr4_2:72030792-72030811 None:intergenic 40.0%
TGAAGAAGGCTTTCTCTGTA+AGG - chr4_2:72030856-72030875 None:intergenic 40.0%
GGAGTTTAGAAGGAAGATCA+GGG - chr4_2:72030927-72030946 None:intergenic 40.0%
! TTTGTAGTTTGAAACTGCGG+CGG + chr4_2:72031054-72031073 Msa0620500:intron 40.0%
TTTGGTGAGTTTGAAGACGA+AGG + chr4_2:72031084-72031103 Msa0620500:CDS 40.0%
AGAAGAATCTGAACATCACC+AGG - chr4_2:72031145-72031164 None:intergenic 40.0%
ATGAAGTTGTTTAGGGAGCT+AGG + chr4_2:72031234-72031253 Msa0620500:intron 40.0%
TGAAGTTGTTTAGGGAGCTA+GGG + chr4_2:72031235-72031254 Msa0620500:intron 40.0%
TTTGTCTTGTGTCCATGTGT+GGG + chr4_2:72031381-72031400 Msa0620500:intron 40.0%
AATACTATGAAGCCCACACA+TGG - chr4_2:72031396-72031415 None:intergenic 40.0%
TTCATGTGATCATGTTCCTC+AGG + chr4_2:72031838-72031857 Msa0620500:CDS 40.0%
ACAATAAGCCACGGATCAAT+GGG - chr4_2:72031988-72032007 None:intergenic 40.0%
AACAATAAGCCACGGATCAA+TGG - chr4_2:72031989-72032008 None:intergenic 40.0%
TCAACATACTTGCTCTTGTC+GGG - chr4_2:72032012-72032031 None:intergenic 40.0%
! CGGATTTTCTTGCAACTTCA+AGG - chr4_2:72032043-72032062 None:intergenic 40.0%
ACGGATAGAAGCAAGTTTCT+AGG - chr4_2:72032172-72032191 None:intergenic 40.0%
ACGATTGTTAATCTTGAGCC+AGG - chr4_2:72032223-72032242 None:intergenic 40.0%
GGCTCAAGATTAACAATCGT+TGG + chr4_2:72032223-72032242 Msa0620500:CDS 40.0%
AACTCACGATGTAGAAGAGT+TGG - chr4_2:72032272-72032291 None:intergenic 40.0%
! CAGTTAGACAGCCTTATATC+AGG + chr4_2:72032419-72032438 Msa0620500:CDS 40.0%
AGGGTTGTAGGAATAGAAGA+TGG + chr4_2:72032439-72032458 Msa0620500:CDS 40.0%
! GATGTTCCTGGTGCTAATAA+TGG + chr4_2:72032803-72032822 Msa0620500:intron 40.0%
! TGGCCATGATGATGTCAAAA+AGG + chr4_2:72032915-72032934 Msa0620500:CDS 40.0%
! GCTATGGCCTGTCTTTTATT+TGG + chr4_2:72032937-72032956 Msa0620500:CDS 40.0%
!! ATGGCCTGTCTTTTATTTGG+AGG + chr4_2:72032940-72032959 Msa0620500:CDS 40.0%
!! TGGCCTGTCTTTTATTTGGA+GGG + chr4_2:72032941-72032960 Msa0620500:CDS 40.0%
TTTATTTGGAGGGTCGAGAA+AGG + chr4_2:72032951-72032970 Msa0620500:CDS 40.0%
ATTCTCAATCAAGATACGCG+AGG - chr4_2:72033619-72033638 None:intergenic 40.0%
TGGTTTACACACCTATCTTC+TGG - chr4_2:72033751-72033770 None:intergenic 40.0%
!! GGATATAGTTTGCTGTTCCA+TGG - chr4_2:72033860-72033879 None:intergenic 40.0%
ACTATATCCATAGCCAAAGC+AGG + chr4_2:72033871-72033890 Msa0620500:CDS 40.0%
TGTTATTCCTGCTTTGGCTA+TGG - chr4_2:72033881-72033900 None:intergenic 40.0%
! AACGGTTGTTATTCCTGCTT+TGG - chr4_2:72033887-72033906 None:intergenic 40.0%
!! TGCCTCTTGATTTGTGTGTT+TGG + chr4_2:72034281-72034300 Msa0620500:intron 40.0%
TGCCAAACACACAAATCAAG+AGG - chr4_2:72034286-72034305 None:intergenic 40.0%
! AGTCAGTGGTTGACGTATTT+TGG + chr4_2:72034375-72034394 Msa0620500:intron 40.0%
CCGTTTCCAAGGAAGAAAAT+TGG + chr4_2:72034472-72034491 Msa0620500:CDS 40.0%
! CTTCAGCCAATTTTCTTCCT+TGG - chr4_2:72034481-72034500 None:intergenic 40.0%
AGGAAGAAAATTGGCTGAAG+AGG + chr4_2:72034481-72034500 Msa0620500:CDS 40.0%
! ATGTTAGCCTAGTCTCGATA+TGG + chr4_2:72034717-72034736 Msa0620500:intron 40.0%
AGCAAATGAAACTGGAGAAG+CGG + chr4_2:72034910-72034929 Msa0620500:CDS 40.0%
! TTGTCCTTTTCATGCGTAAG+AGG + chr4_2:72035494-72035513 Msa0620500:intron 40.0%
CTATCCTCTTACGCATGAAA+AGG - chr4_2:72035501-72035520 None:intergenic 40.0%
ACCAACAAAAGAGCGGAAAA+AGG - chr4_2:72035826-72035845 None:intergenic 40.0%
ATCATGGACCAACAAAAGAG+CGG - chr4_2:72035833-72035852 None:intergenic 40.0%
ACAATGTGCAAGAAGCCATA+AGG + chr4_2:72035913-72035932 Msa0620500:CDS 40.0%
CAGGTGAGAGATTTATCTGT+TGG - chr4_2:72035983-72036002 None:intergenic 40.0%
! ATTGATGATCTCGGCAGAAT+GGG + chr4_2:72036169-72036188 Msa0620500:CDS 40.0%
TGACTTTCTTCTCAGCTAAG+TGG - chr4_2:72036226-72036245 None:intergenic 40.0%
CAAATGGCGTCATCAAATTC+TGG - chr4_2:72036260-72036279 None:intergenic 40.0%
!! CAGAATTTGATGACGCCATT+TGG + chr4_2:72036258-72036277 Msa0620500:intron 40.0%
GGTGTTTGTGTGCTTATGAT+GGG - chr4_2:72036355-72036374 None:intergenic 40.0%
TGGTGTTTGTGTGCTTATGA+TGG - chr4_2:72036356-72036375 None:intergenic 40.0%
TCACATTGTTGCAGTGACAA+AGG + chr4_2:72036403-72036422 Msa0620500:intron 40.0%
CACATTGTTGCAGTGACAAA+GGG + chr4_2:72036404-72036423 Msa0620500:intron 40.0%
ACATTGTTGCAGTGACAAAG+GGG + chr4_2:72036405-72036424 Msa0620500:intron 40.0%
TCTCTGGTGCATGATTAGAA+GGG - chr4_2:72036609-72036628 None:intergenic 40.0%
AAGTAGAGTACAAGCGAGAA+AGG + chr4_2:72036633-72036652 Msa0620500:CDS 40.0%
! GAGAAAGGCGTGTTGTATTT+CGG + chr4_2:72036648-72036667 Msa0620500:CDS 40.0%
! CTACATGATACCTAATGGGT+GGG - chr4_2:72036695-72036714 None:intergenic 40.0%
TCTACATGATACCTAATGGG+TGG - chr4_2:72036696-72036715 None:intergenic 40.0%
GCTAACATCGAGTCTTACAA+AGG - chr4_2:72036786-72036805 None:intergenic 40.0%
AACCATGTACTCCAAAACCA+TGG + chr4_2:72036842-72036861 Msa0620500:three_prime_UTR 40.0%
!!! TTCCATGGTTTTGGAGTACA+TGG - chr4_2:72036847-72036866 None:intergenic 40.0%
!! AATAAGAGGGAGGGTTTTGG+CGG - chr4_2:72030586-72030605 None:intergenic 45.0%
!!! CTGTGGTTTTGGGGAAGAAA+TGG - chr4_2:72030619-72030638 None:intergenic 45.0%
!! CTGATTTGGGGTTAGGGTTT+CGG - chr4_2:72030661-72030680 None:intergenic 45.0%
!! AAAATGTCAGGTTGGGACGA+AGG + chr4_2:72030691-72030710 Msa0620500:exon 45.0%
!! TTTTTGGAGGATGGTGTGGT+TGG - chr4_2:72030788-72030807 None:intergenic 45.0%
CGGAGTTTAGAAGGAAGATC+AGG - chr4_2:72030928-72030947 None:intergenic 45.0%
AGTTTGAAGACGAAGGTTGC+TGG + chr4_2:72031091-72031110 Msa0620500:CDS 45.0%
TGCTGGAGATACTGGTGATA+TGG + chr4_2:72031108-72031127 Msa0620500:CDS 45.0%
TCTGTTTCGATGAGATCGCT+TGG + chr4_2:72031181-72031200 Msa0620500:CDS 45.0%
CTGTTTCGATGAGATCGCTT+GGG + chr4_2:72031182-72031201 Msa0620500:CDS 45.0%
TGTTTCGATGAGATCGCTTG+GGG + chr4_2:72031183-72031202 Msa0620500:CDS 45.0%
GTTTGTCTTGTGTCCATGTG+TGG + chr4_2:72031380-72031399 Msa0620500:intron 45.0%
!! ATGCTGACTCTCGAATGCTT+AGG + chr4_2:72031511-72031530 Msa0620500:intron 45.0%
GGATAACAATTGCTGCATCG+AGG + chr4_2:72031714-72031733 Msa0620500:CDS 45.0%
AATTGCTGCATCGAGGACTA+AGG + chr4_2:72031721-72031740 Msa0620500:CDS 45.0%
GGAACATGATCACATGAACG+TGG - chr4_2:72031836-72031855 None:intergenic 45.0%
GACAGCACAAACTAAACCTG+AGG - chr4_2:72031857-72031876 None:intergenic 45.0%
TTGTCGGGAACAATAAGCCA+CGG - chr4_2:72031997-72032016 None:intergenic 45.0%
GAAGTTGCAAGAAAATCCGG+AGG + chr4_2:72032044-72032063 Msa0620500:CDS 45.0%
!! CTTTTGAAGGACGTTCCAAC+TGG + chr4_2:72032139-72032158 Msa0620500:intron 45.0%
! TTTCTAGGAAGCTCTCCAGT+TGG - chr4_2:72032157-72032176 None:intergenic 45.0%
CTTGTTCAAACTGTAGTGCC+TGG + chr4_2:72032202-72032221 Msa0620500:CDS 45.0%
TCACGATGTAGAAGAGTTGG+AGG - chr4_2:72032269-72032288 None:intergenic 45.0%
! CAGCCTTATATCAGGGTTGT+AGG + chr4_2:72032427-72032446 Msa0620500:CDS 45.0%
ATTAAAGGAGGCAGCCAACA+AGG - chr4_2:72032552-72032571 None:intergenic 45.0%
TCCTCATCTGTAGATGTTCC+TGG + chr4_2:72032791-72032810 Msa0620500:intron 45.0%
ACCAGGAACATCTACAGATG+AGG - chr4_2:72032795-72032814 None:intergenic 45.0%
CGACCCTCCAAATAAAAGAC+AGG - chr4_2:72032947-72032966 None:intergenic 45.0%
CAGCAGCCATGTTGAAAGTT+TGG - chr4_2:72033020-72033039 None:intergenic 45.0%
CAACATGGCTGCTGATCATA+TGG + chr4_2:72033026-72033045 Msa0620500:intron 45.0%
TCCATCTACTGCAAAGTCAC+AGG + chr4_2:72033124-72033143 Msa0620500:CDS 45.0%
ACCTGTGACTTTGCAGTAGA+TGG - chr4_2:72033128-72033147 None:intergenic 45.0%
CATTTCCCTACATTGCCTGA+CGG + chr4_2:72033441-72033460 Msa0620500:intron 45.0%
TGTAACCGTCAGGCAATGTA+GGG - chr4_2:72033449-72033468 None:intergenic 45.0%
ATGTAACCGTCAGGCAATGT+AGG - chr4_2:72033450-72033469 None:intergenic 45.0%
GCTGCTATCTTGGATTACAG+AGG - chr4_2:72033559-72033578 None:intergenic 45.0%
! GACTTACAGTGCTGCTATCT+TGG - chr4_2:72033569-72033588 None:intergenic 45.0%
!! CAGCGCGAGTTTTATCTTGA+AGG + chr4_2:72033664-72033683 Msa0620500:intron 45.0%
!! CGCGAGTTTTATCTTGAAGG+AGG + chr4_2:72033667-72033686 Msa0620500:CDS 45.0%
TTATCTTGAAGGAGGAGCCA+TGG + chr4_2:72033675-72033694 Msa0620500:CDS 45.0%
CTGTTCCATGGCTTCATGAA+TGG - chr4_2:72033848-72033867 None:intergenic 45.0%
! AGGGCGTTATGATGACCTTA+AGG + chr4_2:72033951-72033970 Msa0620500:CDS 45.0%
AATGTTTCTCCAGACTGCAC+AGG + chr4_2:72034063-72034082 Msa0620500:intron 45.0%
CAATATTGTCCTGTGCAGTC+TGG - chr4_2:72034075-72034094 None:intergenic 45.0%
CACATGCTGAAAGCTGAGAA+CGG - chr4_2:72034197-72034216 None:intergenic 45.0%
ATTCATCAGCTAGTGCAACG+AGG + chr4_2:72034433-72034452 Msa0620500:CDS 45.0%
TTCATCAGCTAGTGCAACGA+GGG + chr4_2:72034434-72034453 Msa0620500:CDS 45.0%
! TGATGATGTTGGAGACCGAT+CGG + chr4_2:72034754-72034773 Msa0620500:intron 45.0%
ACCAATTACTGTAAGGCAGC+TGG + chr4_2:72034940-72034959 Msa0620500:CDS 45.0%
TCCAGCTGCCTTACAGTAAT+TGG - chr4_2:72034944-72034963 None:intergenic 45.0%
TGAAAATGCACCAGGAGGTA+TGG - chr4_2:72035047-72035066 None:intergenic 45.0%
! GCCTTTTTCCGCTCTTTTGT+TGG + chr4_2:72035822-72035841 Msa0620500:intron 45.0%
CTCGGTAGCATGATTAGATC+TGG - chr4_2:72035892-72035911 None:intergenic 45.0%
CAGATCTAATCATGCTACCG+AGG + chr4_2:72035890-72035909 Msa0620500:intron 45.0%
AGACACGGTGAAAAGCCTTA+TGG - chr4_2:72035931-72035950 None:intergenic 45.0%
! GCTTTTCACCGTGTCTACAA+TGG + chr4_2:72035935-72035954 Msa0620500:CDS 45.0%
AGCTGCATCCATTGTAGACA+CGG - chr4_2:72035946-72035965 None:intergenic 45.0%
ACAATGGATGCAGCTAAGTC+TGG + chr4_2:72035951-72035970 Msa0620500:CDS 45.0%
ACGACAAACCTGTATCTCAC+GGG - chr4_2:72036012-72036031 None:intergenic 45.0%
CACGACAAACCTGTATCTCA+CGG - chr4_2:72036013-72036032 None:intergenic 45.0%
! GATTGATGATCTCGGCAGAA+TGG + chr4_2:72036168-72036187 Msa0620500:CDS 45.0%
! TTGATGATCTCGGCAGAATG+GGG + chr4_2:72036170-72036189 Msa0620500:CDS 45.0%
CTCTCTGGTGCATGATTAGA+AGG - chr4_2:72036610-72036629 None:intergenic 45.0%
TGTACTCTACTTCGTCTCTC+TGG - chr4_2:72036625-72036644 None:intergenic 45.0%
GGTGGGAAAACTGACAAGTT+AGG - chr4_2:72036678-72036697 None:intergenic 45.0%
! TGTCAGTTTTCCCACCCATT+AGG + chr4_2:72036682-72036701 Msa0620500:three_prime_UTR 45.0%
GGATGCCCTTAAATGAAGCT+TGG - chr4_2:72036725-72036744 None:intergenic 45.0%
!! GAAAAGTGTAGTGGGTGCGT+GGG - chr4_2:72030549-72030568 None:intergenic 50.0%
! TGTGGCGGGAAAAGTGTAGT+GGG - chr4_2:72030557-72030576 None:intergenic 50.0%
! TTGTGGCGGGAAAAGTGTAG+TGG - chr4_2:72030558-72030577 None:intergenic 50.0%
! TTTTGGCGGGAATGTTGTGG+CGG - chr4_2:72030572-72030591 None:intergenic 50.0%
!! ATAAGAGGGAGGGTTTTGGC+GGG - chr4_2:72030585-72030604 None:intergenic 50.0%
GGAGCAGATCGGAGTTTAGA+AGG - chr4_2:72030937-72030956 None:intergenic 50.0%
GAATATCGGCAGGAGCAGAT+CGG - chr4_2:72030948-72030967 None:intergenic 50.0%
TCCTGCCGATATTCTTCCTC+TGG + chr4_2:72030954-72030973 Msa0620500:CDS 50.0%
ACCAGAGGAAGAATATCGGC+AGG - chr4_2:72030958-72030977 None:intergenic 50.0%
ACGAAGGTTGCTGGAGATAC+TGG + chr4_2:72031100-72031119 Msa0620500:CDS 50.0%
GATATGGAAGATGCTGCTCC+TGG + chr4_2:72031124-72031143 Msa0620500:CDS 50.0%
TCACATGTGTCGTGTCAGAC+CGG - chr4_2:72031315-72031334 None:intergenic 50.0%
ATGGGACAAGGTTCTTCTCC+AGG - chr4_2:72031970-72031989 None:intergenic 50.0%
AACCTTGTCCCATTGATCCG+TGG + chr4_2:72031977-72031996 Msa0620500:CDS 50.0%
GGAAATGAAGCCAAGTCTCG+AGG + chr4_2:72032460-72032479 Msa0620500:CDS 50.0%
! TCTGGCAAATGCTGCTTGCA+AGG - chr4_2:72033059-72033078 None:intergenic 50.0%
TGCAAGCAGCATTTGCCAGA+TGG + chr4_2:72033059-72033078 Msa0620500:intron 50.0%
GCAAGCAGCATTTGCCAGAT+GGG + chr4_2:72033060-72033079 Msa0620500:intron 50.0%
CAAGCAGCATTTGCCAGATG+GGG + chr4_2:72033061-72033080 Msa0620500:intron 50.0%
CCTCTTAATCTCACCCCATC+TGG - chr4_2:72033077-72033096 None:intergenic 50.0%
CCAGATGGGGTGAGATTAAG+AGG + chr4_2:72033074-72033093 Msa0620500:CDS 50.0%
GGAAAAGGATCATCAGCTGC+TGG + chr4_2:72033525-72033544 Msa0620500:CDS 50.0%
CTTGGATTACAGAGGCTGTG+AGG - chr4_2:72033551-72033570 None:intergenic 50.0%
GGTTGCCATTCATGAAGCCA+TGG + chr4_2:72033840-72033859 Msa0620500:CDS 50.0%
TCATCATAACGCCCTGATGG+GGG - chr4_2:72033946-72033965 None:intergenic 50.0%
GTCATCATAACGCCCTGATG+GGG - chr4_2:72033947-72033966 None:intergenic 50.0%
GGTCATCATAACGCCCTGAT+GGG - chr4_2:72033948-72033967 None:intergenic 50.0%
AGGTCATCATAACGCCCTGA+TGG - chr4_2:72033949-72033968 None:intergenic 50.0%
TCATCAGCTAGTGCAACGAG+GGG + chr4_2:72034435-72034454 Msa0620500:CDS 50.0%
TGAATGCCACCCTCGTCTAT+CGG + chr4_2:72034608-72034627 Msa0620500:CDS 50.0%
TATCGGAAGCTGCAGCAACA+AGG + chr4_2:72034625-72034644 Msa0620500:CDS 50.0%
AGGCGGCAAGCAAATGAAAC+TGG + chr4_2:72034902-72034921 Msa0620500:CDS 50.0%
GGCAGCTGGAAGCTATTGTA+AGG + chr4_2:72034954-72034973 Msa0620500:CDS 50.0%
! CACCTTTTGTCCATACCTCC+TGG + chr4_2:72035034-72035053 Msa0620500:intron 50.0%
! CACCAGGAGGTATGGACAAA+AGG - chr4_2:72035039-72035058 None:intergenic 50.0%
GGCTTCTTGCACATTGTCCT+CGG - chr4_2:72035910-72035929 None:intergenic 50.0%
TGTATCTCACGGGCCATTTC+AGG - chr4_2:72036002-72036021 None:intergenic 50.0%
TGAAATGGCCCGTGAGATAC+AGG + chr4_2:72036001-72036020 Msa0620500:CDS 50.0%
!! GGAAAAGTGTAGTGGGTGCG+TGG - chr4_2:72030550-72030569 None:intergenic 55.0%
TTTGGCGGGAATGTTGTGGC+GGG - chr4_2:72030571-72030590 None:intergenic 55.0%
!! GGGTTTTGGCGGGAATGTTG+TGG - chr4_2:72030575-72030594 None:intergenic 55.0%
!! ATGTCAGGTTGGGACGAAGG+AGG + chr4_2:72030694-72030713 Msa0620500:CDS 55.0%
ACAGCGACCAAGCACACTCA+TGG + chr4_2:72030725-72030744 Msa0620500:CDS 55.0%
CAGCGACCAAGCACACTCAT+GGG + chr4_2:72030726-72030745 Msa0620500:CDS 55.0%
CAAGCACACTCATGGGACGA+CGG + chr4_2:72030733-72030752 Msa0620500:CDS 55.0%
! GTGGTTGGAGATGGTGGCAT+CGG - chr4_2:72030773-72030792 None:intergenic 55.0%
GATGGTGTGGTTGGAGATGG+TGG - chr4_2:72030779-72030798 None:intergenic 55.0%
GAGGATGGTGTGGTTGGAGA+TGG - chr4_2:72030782-72030801 None:intergenic 55.0%
AGGGGAAGCAAGTTCCGTGT+CGG + chr4_2:72031786-72031805 Msa0620500:CDS 55.0%
AGCCACGGATCAATGGGACA+AGG - chr4_2:72031982-72032001 None:intergenic 55.0%
TGAAGGAGGAGCCATGGTCT+TGG + chr4_2:72033681-72033700 Msa0620500:CDS 55.0%
ACCTCCATCTGCCAAGACCA+TGG - chr4_2:72033695-72033714 None:intergenic 55.0%
ATAACGCCCTGATGGGGGAT+TGG - chr4_2:72033941-72033960 None:intergenic 55.0%
GAACAGGACTCCCGTTTCCA+AGG + chr4_2:72034461-72034480 Msa0620500:CDS 55.0%
CTGCAGCTTCCGATAGACGA+GGG - chr4_2:72034620-72034639 None:intergenic 55.0%
! CGTGGGAGCGTAGGATATCG+TGG - chr4_2:72030532-72030551 None:intergenic 60.0%
CGTCGTCCCATGAGTGTGCT+TGG - chr4_2:72030735-72030754 None:intergenic 60.0%
! AAGCAAGTTCCGTGTCGGCC+AGG + chr4_2:72031791-72031810 Msa0620500:CDS 60.0%
! TTCCGTGTCGGCCAGGACTT+GGG + chr4_2:72031798-72031817 Msa0620500:CDS 60.0%
ACAACTGCTCCCCCAAGTCC+TGG - chr4_2:72031812-72031831 None:intergenic 60.0%
! GGAGCCATGGTCTTGGCAGA+TGG + chr4_2:72033688-72033707 Msa0620500:CDS 60.0%
! GCCATGGTCTTGGCAGATGG+AGG + chr4_2:72033691-72033710 Msa0620500:CDS 60.0%
CTGCTGCCAATCCCCCATCA+GGG + chr4_2:72033932-72033951 Msa0620500:CDS 60.0%
CAGCTTCCGATAGACGAGGG+TGG - chr4_2:72034617-72034636 None:intergenic 60.0%
GCTGCAGCTTCCGATAGACG+AGG - chr4_2:72034621-72034640 None:intergenic 60.0%
! TAGTGGGTGCGTGGGAGCGT+AGG - chr4_2:72030541-72030560 None:intergenic 65.0%
!! TGGCATCGGTTTCGCCGCCA+CGG - chr4_2:72030759-72030778 None:intergenic 65.0%
! GTTTGAAACTGCGGCGGCGC+AGG + chr4_2:72031060-72031079 Msa0620500:intron 65.0%
! AACTGCGGCGGCGCAGGTTT+TGG + chr4_2:72031066-72031085 Msa0620500:CDS 65.0%
! GTTCCGTGTCGGCCAGGACT+TGG + chr4_2:72031797-72031816 Msa0620500:CDS 65.0%
! TCCGTGTCGGCCAGGACTTG+GGG + chr4_2:72031799-72031818 Msa0620500:CDS 65.0%
CGCAGTGGGACCTCGAGACT+TGG - chr4_2:72032473-72032492 None:intergenic 65.0%
GCTGCTGCCAATCCCCCATC+AGG + chr4_2:72033931-72033950 Msa0620500:CDS 65.0%
GTGCAACGAGGGGCGAGAAC+AGG + chr4_2:72034445-72034464 Msa0620500:CDS 65.0%
CACTCATGGGACGACGGCCG+TGG + chr4_2:72030739-72030758 Msa0620500:CDS 70.0%
TCATGGGACGACGGCCGTGG+CGG + chr4_2:72030742-72030761 Msa0620500:CDS 70.0%
CCCCCAAGTCCTGGCCGACA+CGG - chr4_2:72031803-72031822 None:intergenic 70.0%
! CCGTGTCGGCCAGGACTTGG+GGG + chr4_2:72031800-72031819 Msa0620500:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 72030527 72036958 72030527 ID=Msa0620500;Name=Msa0620500
chr4_2 mRNA 72030527 72036958 72030527 ID=Msa0620500-mRNA-1;Parent=Msa0620500;Name=Msa0620500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=167|1|1|1|1|1|18|279|733
chr4_2 exon 72030527 72030975 72030527 ID=Msa0620500-mRNA-1:exon:21363;Parent=Msa0620500-mRNA-1
chr4_2 exon 72031061 72031204 72031061 ID=Msa0620500-mRNA-1:exon:21364;Parent=Msa0620500-mRNA-1
chr4_2 exon 72031680 72031859 72031680 ID=Msa0620500-mRNA-1:exon:21365;Parent=Msa0620500-mRNA-1
chr4_2 exon 72031967 72032065 72031967 ID=Msa0620500-mRNA-1:exon:21366;Parent=Msa0620500-mRNA-1
chr4_2 exon 72032148 72032284 72032148 ID=Msa0620500-mRNA-1:exon:21367;Parent=Msa0620500-mRNA-1
chr4_2 exon 72032402 72032507 72032402 ID=Msa0620500-mRNA-1:exon:21368;Parent=Msa0620500-mRNA-1
chr4_2 exon 72032838 72032972 72032838 ID=Msa0620500-mRNA-1:exon:21369;Parent=Msa0620500-mRNA-1
chr4_2 exon 72033068 72033145 72033068 ID=Msa0620500-mRNA-1:exon:21370;Parent=Msa0620500-mRNA-1
chr4_2 exon 72033477 72033581 72033477 ID=Msa0620500-mRNA-1:exon:21371;Parent=Msa0620500-mRNA-1
chr4_2 exon 72033667 72033758 72033667 ID=Msa0620500-mRNA-1:exon:21372;Parent=Msa0620500-mRNA-1
chr4_2 exon 72033840 72033972 72033840 ID=Msa0620500-mRNA-1:exon:21373;Parent=Msa0620500-mRNA-1
chr4_2 exon 72034076 72034171 72034076 ID=Msa0620500-mRNA-1:exon:21374;Parent=Msa0620500-mRNA-1
chr4_2 exon 72034405 72034502 72034405 ID=Msa0620500-mRNA-1:exon:21375;Parent=Msa0620500-mRNA-1
chr4_2 exon 72034587 72034677 72034587 ID=Msa0620500-mRNA-1:exon:21376;Parent=Msa0620500-mRNA-1
chr4_2 exon 72034896 72035005 72034896 ID=Msa0620500-mRNA-1:exon:21377;Parent=Msa0620500-mRNA-1
chr4_2 exon 72035893 72036022 72035893 ID=Msa0620500-mRNA-1:exon:21378;Parent=Msa0620500-mRNA-1
chr4_2 exon 72036106 72036207 72036106 ID=Msa0620500-mRNA-1:exon:21379;Parent=Msa0620500-mRNA-1
chr4_2 exon 72036596 72036958 72036596 ID=Msa0620500-mRNA-1:exon:21380;Parent=Msa0620500-mRNA-1
chr4_2 five_prime_UTR 72030527 72030693 72030527 ID=Msa0620500-mRNA-1:five_prime_utr;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72030694 72030975 72030694 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72031061 72031204 72031061 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72031680 72031859 72031680 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72031967 72032065 72031967 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72032148 72032284 72032148 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72032402 72032507 72032402 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72032838 72032972 72032838 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72033068 72033145 72033068 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72033477 72033581 72033477 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72033667 72033758 72033667 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72033840 72033972 72033840 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72034076 72034171 72034076 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72034405 72034502 72034405 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72034587 72034677 72034587 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72034896 72035005 72034896 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72035893 72036022 72035893 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72036106 72036207 72036106 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 CDS 72036596 72036679 72036596 ID=Msa0620500-mRNA-1:cds;Parent=Msa0620500-mRNA-1
chr4_2 three_prime_UTR 72036680 72036958 72036680 ID=Msa0620500-mRNA-1:three_prime_utr;Parent=Msa0620500-mRNA-1
Gene Sequence

>Msa0620500

ATGTCAGGTTGGGACGAAGGAGGCGTATACTACAGCGACCAAGCACACTCATGGGACGACGGCCGTGGCGGCGAAACCGATGCCACCATCTCCAACCACACCATCCTCCAAAAATTCAAAGAATTCATCCGTAACTTTGAAACCGGTAACAATGTCTTTCCTTACAGAGAAAGCCTTCTTCACAATCCCAAATATCTTCTCGTTGATATGGAAGATCTCGACTCTTTTGACCCTGATCTTCCTTCTAAACTCCGATCTGCTCCTGCCGATATTCTTCCTCTGTTTGAAACTGCGGCGGCGCAGGTTTTGGTGAGTTTGAAGACGAAGGTTGCTGGAGATACTGGTGATATGGAAGATGCTGCTCCTGGTGATGTTCAGATTCTTCTTACTTCTAAGGAGGATTCTGTTTCGATGAGATCGCTTGGGGCTCAATACATTTCGAAGCTTGTTAAAATTGCTGGGATAACAATTGCTGCATCGAGGACTAAGGCAAAAGCAACATATGTGACCTTGATATGTAAGAATTGTAAGAAGGGGAAGCAAGTTCCGTGTCGGCCAGGACTTGGGGGAGCAGTTGTTCCACGTTCATGTGATCATGTTCCTCAGCCTGGAGAAGAACCTTGTCCCATTGATCCGTGGCTTATTGTTCCCGACAAGAGCAAGTATGTTGATCAACAAACCTTGAAGTTGCAAGAAAATCCGGAGGACGTTCCAACTGGAGAGCTTCCTAGAAACTTGCTTCTATCCGTTGATCGACATCTTGTTCAAACTGTAGTGCCTGGCTCAAGATTAACAATCGTTGGAATCTATAGTATTTTTCAGGCCTCCAACTCTTCTACATCCAACAAAGGAGCAGTTGCAGTTAGACAGCCTTATATCAGGGTTGTAGGAATAGAAGATGGAAATGAAGCCAAGTCTCGAGGTCCCACTGCGTTTACAAATGAAGAAATTGAAGAGTTCAAAAAATTTGCAGCTGATCATGATGTATACAAAAATATATGCTCCAAGATTGCTCCGTCTATATTTGGCCATGATGATGTCAAAAAGGCTATGGCCTGTCTTTTATTTGGAGGGTCGAGAAAGCATTTGCCAGATGGGGTGAGATTAAGAGGTGATATCAATGTGTTACTTCTCGGGGATCCATCTACTGCAAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACTGCACCTATTGCTGTTTATACTTCTGGAAAAGGATCATCAGCTGCTGGCCTCACAGCCTCTGTAATCCAAGATAGCAGCACTCGCGAGTTTTATCTTGAAGGAGGAGCCATGGTCTTGGCAGATGGAGGTGTTGTCTGCATTGATGAGTTTGATAAGATGAGACCAGAAGATAGGGTTGCCATTCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACAACCGTTCTTAATTCAAGGACTTCTGTTCTTGCTGCTGCCAATCCCCCATCAGGGCGTTATGATGACCTTAAGACTGCACAGGACAATATTGATTTACAGACAACTATTCTTTCTAGGTTTGATTTAATCTTCATAGTGAAAGACATCAGAATGTACGAACAAGATAAGATAATAGCTAGTCATATCATAAAGGTTCATTCATCAGCTAGTGCAACGAGGGGCGAGAACAGGACTCCCGTTTCCAAGGAAGAAAATTGGCTGAAGAGGTACTTGCAATATTGTCGAACTGAATGCCACCCTCGTCTATCGGAAGCTGCAGCAACAAGGCTGCAAAATAATTATGTGAATATCAGACAGGATATGAGGCGGCAAGCAAATGAAACTGGAGAAGCGGCTGCAATACCAATTACTGTAAGGCAGCTGGAAGCTATTGTAAGGTTGAGTGAGTCACTTGCAAAGATGAAACTATCTAATCATGCTACCGAGGACAATGTGCAAGAAGCCATAAGGCTTTTCACCGTGTCTACAATGGATGCAGCTAAGTCTGGAATAAACCAACAGATAAATCTCTCACCTGAAATGGCCCGTGAGATACAGCAAGCAGAAGTTCAGATAAAGAGAAGAATCGGGATTGGGAACCACATATCAGAAAGAAGACTGATTGATGATCTCGGCAGAATGGGGATGAATGAATCTATTGTAAGAAGAGCCCTTCTAATCATGCACCAGAGAGACGAAGTAGAGTACAAGCGAGAAAGGCGTGTTGTATTTCGGAAAGCCTAA
Protein sequence

>Msa0620500

MSGWDEGGVYYSDQAHSWDDGRGGETDATISNHTILQKFKEFIRNFETGNNVFPYRESLLHNPKYLLVDMEDLDSFDPDLPSKLRSAPADILPLFETAAAQVLVSLKTKVAGDTGDMEDAAPGDVQILLTSKEDSVSMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAVVPRSCDHVPQPGEEPCPIDPWLIVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTIVGIYSIFQASNSSTSNKGAVAVRQPYIRVVGIEDGNEAKSRGPTAFTNEEIEEFKKFAADHDVYKNICSKIAPSIFGHDDVKKAMACLLFGGSRKHLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYEQDKIIASHIIKVHSSASATRGENRTPVSKEENWLKRYLQYCRTECHPRLSEAAATRLQNNYVNIRQDMRRQANETGEAAAIPITVRQLEAIVRLSESLAKMKLSNHATEDNVQEAIRLFTVSTMDAAKSGINQQINLSPEMAREIQQAEVQIKRRIGIGNHISERRLIDDLGRMGMNESIVRRALLIMHQRDEVEYKRERRVVFRKA*