AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0960770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960770 MtrunA17_Chr6g0479091 83.813 278 15 2 4 251 1 278 3.48e-165 458
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960770 AT4G37110.1 30.196 255 132 9 12 247 29 256 1.69e-16 78.6
Msa0960770 AT4G37110.2 28.685 251 128 9 12 247 29 243 4.88e-13 68.6

Find 59 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGGTAACTGCAGAAAA+TGG 0.213288 6_3:+80837449 Msa0960770:intron
AACAACGTACACCTGTTAAA+AGG 0.219507 6_3:+80836357 Msa0960770:CDS
GAAGGCTAGGTTAGAATCTT+TGG 0.233193 6_3:+80836280 Msa0960770:intron
ACACCTGTTAAAAGGGTTTA+TGG 0.240841 6_3:+80836365 Msa0960770:CDS
CAGTATCTACAATCCAGTTT+TGG 0.310852 6_3:+80837616 Msa0960770:CDS
AGAAAGGAATAAGACCTTAT+TGG 0.336569 6_3:+80839147 Msa0960770:CDS
GTACGTTGTTGTTTCTTAGT+TGG 0.358362 6_3:-80836344 None:intergenic
GACCTTATTGGATATGTAAC+AGG 0.372337 6_3:+80839159 Msa0960770:CDS
AAGGCTAGGTTAGAATCTTT+GGG 0.379877 6_3:+80836281 Msa0960770:intron
CACGGTGGCAGTTGCGGTAC+CGG 0.381418 6_3:-80836432 None:intergenic
AGAAAATGCTCTACATCCTT+CGG 0.383546 6_3:-80837548 None:intergenic
AAACGAAAGATGTCGCCAAC+TGG 0.392964 6_3:+80839346 Msa0960770:CDS
TGGCAGCATATCCCCAAAAC+TGG 0.395004 6_3:-80837629 None:intergenic
GAAAATGCTCTACATCCTTC+GGG 0.396073 6_3:-80837547 None:intergenic
AAAAGGTAACTGCAGAAAAT+GGG 0.406202 6_3:+80837450 Msa0960770:CDS
TGCGCGGCGCTGCGATAGCA+AGG 0.412089 6_3:+80837586 Msa0960770:CDS
ACAACGTACACCTGTTAAAA+GGG 0.463307 6_3:+80836358 Msa0960770:CDS
CATCCTTGATTCGCTGAGAT+CGG 0.480008 6_3:-80836403 None:intergenic
TACCTGTTACATATCCAATA+AGG 0.483081 6_3:-80839161 None:intergenic
GATGTGAATGAACCTTGTTT+AGG 0.485053 6_3:+80838363 Msa0960770:CDS
GTTTCTGAGAGATTCGTAAT+CGG 0.501013 6_3:-80836143 None:intergenic
CCTTTCTCTTCTATGCAATG+TGG 0.502029 6_3:-80839131 None:intergenic
CGCTGCGATAGCAAGGGTAG+AGG 0.503993 6_3:+80837593 Msa0960770:CDS
CGCTCGCATGTCAGAAAACA+AGG 0.512896 6_3:+80836165 Msa0960770:CDS
AAGAAGATTGCAAGAGATGT+GGG 0.513623 6_3:+80838334 Msa0960770:CDS
CTTTCTCTTCTATGCAATGT+GGG 0.517606 6_3:-80839130 None:intergenic
ATTCGCTGAGATCGGCGCAC+TGG 0.525686 6_3:-80836395 None:intergenic
GGTAAGATCGTCGCTGAGGA+AGG 0.529353 6_3:-80836466 None:intergenic
TTGTAACTACTGATGAGAAA+AGG 0.533068 6_3:+80837495 Msa0960770:CDS
GCGCCGATCTCAGCGAATCA+AGG 0.543159 6_3:+80836400 Msa0960770:CDS
GCAGGCAAAAGAAATTGTGC+GGG 0.547067 6_3:+80838310 Msa0960770:intron
AGGTGCGAGAGAACAAGGAA+TGG 0.549633 6_3:+80839102 Msa0960770:CDS
GAGCGTCACGGTGGCAGTTG+CGG 0.550391 6_3:-80836438 None:intergenic
AGAATATGGACCTGCAAAAG+TGG 0.553469 6_3:-80837649 None:intergenic
GAAGAAGATTGCAAGAGATG+TGG 0.555689 6_3:+80838333 Msa0960770:CDS
TCAATGAGAGGTGCATTCGC+AGG 0.556862 6_3:-80837518 None:intergenic
GGAGGAGGTGCGAGAGAACA+AGG 0.559477 6_3:+80839097 Msa0960770:CDS
TGCAGAAAATGGGGAAGAAG+AGG 0.565772 6_3:+80837460 Msa0960770:CDS
TCTTTCTGATGCAGAAATGG+AGG 0.571930 6_3:+80839079 Msa0960770:intron
TACGCCGTTACGCCAAAACA+AGG 0.575617 6_3:+80836509 Msa0960770:CDS
CCACATTGCATAGAAGAGAA+AGG 0.579806 6_3:+80839131 Msa0960770:CDS
AACGAAAGATGTCGCCAACT+GGG 0.580211 6_3:+80839347 Msa0960770:CDS
GCGCGGCGCTGCGATAGCAA+GGG 0.581578 6_3:+80837587 Msa0960770:CDS
TTCTGATGCAGAAATGGAGG+AGG 0.588072 6_3:+80839082 Msa0960770:intron
CGAATCAAGGATGTTTCCGC+CGG 0.595951 6_3:+80836413 Msa0960770:CDS
AGGAAGGTCTTCGAGCGTCA+CGG 0.599369 6_3:-80836450 None:intergenic
TGCAGGCAAAAGAAATTGTG+CGG 0.602252 6_3:+80838309 Msa0960770:intron
AAAGGTAACTGCAGAAAATG+GGG 0.611139 6_3:+80837451 Msa0960770:CDS
TTCGGGTTCAGTTCAATGAG+AGG 0.620452 6_3:-80837530 None:intergenic
GGTGGCAGTTGCGGTACCGG+CGG 0.628714 6_3:-80836429 None:intergenic
AATCAAATCTTACCTAAACA+AGG 0.650664 6_3:-80838375 None:intergenic
GTGTGTATTGCAATCCCAGT+TGG 0.660496 6_3:-80839361 None:intergenic
TCTCATTGAACTGAACCCGA+AGG 0.675873 6_3:+80837532 Msa0960770:CDS
TATGCAGCTCAATATGCATG+AGG 0.683395 6_3:+80839323 Msa0960770:intron
AAACGGTAAGATCGTCGCTG+AGG 0.683773 6_3:-80836470 None:intergenic
ACTGGGATTGCAATACACAC+AGG 0.706206 6_3:+80839364 Msa0960770:CDS
CAGGCAAAAGAAATTGTGCG+GGG 0.721318 6_3:+80838311 Msa0960770:intron
AAGGTCTTCGAGCGTCACGG+TGG 0.749237 6_3:-80836447 None:intergenic
TTTCAGAAGAGATTTCTGCG+CGG 0.814056 6_3:+80837570 Msa0960770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCACAAAAAAAAAAAAAAA+TGG + chr6_3:80836090-80836109 Msa0960770:exon 10.0%
!! TCACAAAAAAAAAAAAAAAT+GGG + chr6_3:80836091-80836110 Msa0960770:exon 10.0%
!! TTTGAAAAATATATATTACA+TGG + chr6_3:80836609-80836628 Msa0960770:intron 10.0%
!! AATGTTTGTTTAAAAAAATT+AGG + chr6_3:80836716-80836735 Msa0960770:intron 10.0%
!! CACAAAAAAAAAAAAAAATG+GGG + chr6_3:80836092-80836111 Msa0960770:exon 15.0%
!! TAATAATAATGAAGAGTTTA+GGG - chr6_3:80836206-80836225 None:intergenic 15.0%
!! ATAATAATAATGAAGAGTTT+AGG - chr6_3:80836207-80836226 None:intergenic 15.0%
!!! TGATTTTATCAAATTATTAG+CGG - chr6_3:80836801-80836820 None:intergenic 15.0%
!! AAAATTAAAAGAACATCTAA+TGG - chr6_3:80837093-80837112 None:intergenic 15.0%
!! CTAATCTAAATATTAACAAT+TGG - chr6_3:80837322-80837341 None:intergenic 15.0%
!!! CAATTTAGTTGATTTTTAAA+TGG - chr6_3:80838168-80838187 None:intergenic 15.0%
!!! TCTATTTTTTGTTATAAAAC+TGG + chr6_3:80838740-80838759 Msa0960770:intron 15.0%
!! TATCAATTAAGGTAATAAAA+TGG - chr6_3:80839305-80839324 None:intergenic 15.0%
!!! TTTTTTTTTTGTGATGTGTT+GGG - chr6_3:80836085-80836104 None:intergenic 20.0%
!!! TTTTTTTTTTTGTGATGTGT+TGG - chr6_3:80836086-80836105 None:intergenic 20.0%
!! ATTTAGTGTAATAATATGTG+TGG + chr6_3:80836825-80836844 Msa0960770:intron 20.0%
!! TTTAGTGTAATAATATGTGT+GGG + chr6_3:80836826-80836845 Msa0960770:intron 20.0%
!! TAAGATATATGTGAAAATGA+AGG + chr6_3:80837284-80837303 Msa0960770:intron 20.0%
!! TTAGATTAGATATAGATTAG+AGG + chr6_3:80837333-80837352 Msa0960770:intron 20.0%
!! TACAAAATATTGTCAAATAG+AGG + chr6_3:80837905-80837924 Msa0960770:intron 20.0%
!! TGATAACATCAATGTATATA+AGG + chr6_3:80838074-80838093 Msa0960770:intron 20.0%
!!! ACTCTTTTAACATGTTATTT+AGG - chr6_3:80838214-80838233 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAT+TGG + chr6_3:80838808-80838827 Msa0960770:intron 20.0%
!!! TTAAGTTGTTTATCCAAATT+GGG + chr6_3:80838809-80838828 Msa0960770:intron 20.0%
!!! ATGTGTATAGAATGTTTTAA+AGG + chr6_3:80839246-80839265 Msa0960770:intron 20.0%
!! TATGTTGATGAATGAATTGA+AGG + chr6_3:80836262-80836281 Msa0960770:intron 25.0%
!!! GCAAAATAAAAACCTTGTTT+TGG - chr6_3:80836524-80836543 None:intergenic 25.0%
! AAACAGAGACAAGAAAATTA+GGG - chr6_3:80836546-80836565 None:intergenic 25.0%
! TCTTTGCATTAGCATATTAA+GGG + chr6_3:80836632-80836651 Msa0960770:intron 25.0%
!!! TCTACTTTTGTGTAGAAAAA+GGG - chr6_3:80837687-80837706 None:intergenic 25.0%
!!! ATCTACTTTTGTGTAGAAAA+AGG - chr6_3:80837688-80837707 None:intergenic 25.0%
! TATAATGACCTAGTATTCTT+TGG + chr6_3:80837711-80837730 Msa0960770:intron 25.0%
!! GTAACAAACTTAGACATTTT+GGG - chr6_3:80837738-80837757 None:intergenic 25.0%
!! AGTAACAAACTTAGACATTT+TGG - chr6_3:80837739-80837758 None:intergenic 25.0%
!!! AAAATGTCTAAGTTTGTTAC+TGG + chr6_3:80837738-80837757 Msa0960770:intron 25.0%
!!! AAATGTCTAAGTTTGTTACT+GGG + chr6_3:80837739-80837758 Msa0960770:intron 25.0%
! ATAACACTGTTGTTAAATAG+TGG + chr6_3:80837804-80837823 Msa0960770:intron 25.0%
!!! TTAAACATAACCGCTATTTT+TGG + chr6_3:80837967-80837986 Msa0960770:intron 25.0%
!! TAGCATTTTACCAAAAATAG+CGG - chr6_3:80837980-80837999 None:intergenic 25.0%
! AAATGCTATTGACAAAATTG+AGG + chr6_3:80837992-80838011 Msa0960770:intron 25.0%
! AATCAAATCTTACCTAAACA+AGG - chr6_3:80838378-80838397 None:intergenic 25.0%
! AGACATGCTCAAATAAATAA+AGG + chr6_3:80838557-80838576 Msa0960770:intron 25.0%
!! CAAATAAATAAAGGCATGTT+AGG + chr6_3:80838566-80838585 Msa0960770:intron 25.0%
! TGATGGTATCTAAATTCAAA+AGG - chr6_3:80839212-80839231 None:intergenic 25.0%
!! AGCTGAAACTACTTTTCAAA+CGG - chr6_3:80836490-80836509 None:intergenic 30.0%
CAAACAGAGACAAGAAAATT+AGG - chr6_3:80836547-80836566 None:intergenic 30.0%
GTCTTTGCATTAGCATATTA+AGG + chr6_3:80836631-80836650 Msa0960770:intron 30.0%
! TAGCATATTAAGGGTATGTT+TGG + chr6_3:80836641-80836660 Msa0960770:intron 30.0%
! ATATTAAGGGTATGTTTGGT+TGG + chr6_3:80836645-80836664 Msa0960770:intron 30.0%
TATCAAATTATTAGCGGTGA+CGG - chr6_3:80836795-80836814 None:intergenic 30.0%
TTCAATGTAATCGCAAGTAT+CGG - chr6_3:80837004-80837023 None:intergenic 30.0%
!!! AACCTTTTTTTGTTGTTGCA+TGG + chr6_3:80837375-80837394 Msa0960770:intron 30.0%
!!! ACCTTTTTTTGTTGTTGCAT+GGG + chr6_3:80837376-80837395 Msa0960770:intron 30.0%
ACTGAATTACGTTACAGAAA+AGG + chr6_3:80837433-80837452 Msa0960770:intron 30.0%
AAAAGGTAACTGCAGAAAAT+GGG + chr6_3:80837450-80837469 Msa0960770:CDS 30.0%
TTGTAACTACTGATGAGAAA+AGG + chr6_3:80837495-80837514 Msa0960770:CDS 30.0%
! AGTATCTACAATCCAGTTTT+GGG + chr6_3:80837617-80837636 Msa0960770:CDS 30.0%
!! AATGTCTAAGTTTGTTACTG+GGG + chr6_3:80837740-80837759 Msa0960770:intron 30.0%
!!! AACTGCTATTTTCTGAAATC+CGG + chr6_3:80838048-80838067 Msa0960770:intron 30.0%
TACATTGATGTTATCAATGC+CGG - chr6_3:80838070-80838089 None:intergenic 30.0%
AATCGTAAAGAGTCTATTAC+AGG - chr6_3:80838104-80838123 None:intergenic 30.0%
!!! GACTAGCTTGTTTTTTCAAA+AGG - chr6_3:80838192-80838211 None:intergenic 30.0%
GCAATGAAAAACATAAATGC+AGG + chr6_3:80838292-80838311 Msa0960770:intron 30.0%
AGTCTCAGAAATGTTTATGT+CGG - chr6_3:80838615-80838634 None:intergenic 30.0%
!! TAAACATTTCTGAGACTGTT+TGG + chr6_3:80838618-80838637 Msa0960770:intron 30.0%
!! AAACATTTCTGAGACTGTTT+GGG + chr6_3:80838619-80838638 Msa0960770:intron 30.0%
TTGATCTGTTTACACTGTTT+AGG - chr6_3:80838844-80838863 None:intergenic 30.0%
ATCAAATAAACGTGACATCT+AGG - chr6_3:80838909-80838928 None:intergenic 30.0%
ATATATTCAAAGAGAGAGCA+TGG + chr6_3:80838959-80838978 Msa0960770:intron 30.0%
TTATCTTTCTGATGCAGAAA+TGG + chr6_3:80839076-80839095 Msa0960770:intron 30.0%
AGAAAGGAATAAGACCTTAT+TGG + chr6_3:80839147-80839166 Msa0960770:CDS 30.0%
TACCTGTTACATATCCAATA+AGG - chr6_3:80839164-80839183 None:intergenic 30.0%
CATTTATGTCTGCATATTGA+TGG - chr6_3:80839229-80839248 None:intergenic 30.0%
ATTGAGCTGCATATCAATTA+AGG - chr6_3:80839316-80839335 None:intergenic 30.0%
! GTTTCTGAGAGATTCGTAAT+CGG - chr6_3:80836146-80836165 None:intergenic 35.0%
TGATGAATGAATTGAAGGCT+AGG + chr6_3:80836267-80836286 Msa0960770:intron 35.0%
AAGGCTAGGTTAGAATCTTT+GGG + chr6_3:80836281-80836300 Msa0960770:intron 35.0%
!! GTACGTTGTTGTTTCTTAGT+TGG - chr6_3:80836347-80836366 None:intergenic 35.0%
AACAACGTACACCTGTTAAA+AGG + chr6_3:80836357-80836376 Msa0960770:CDS 35.0%
ACAACGTACACCTGTTAAAA+GGG + chr6_3:80836358-80836377 Msa0960770:CDS 35.0%
ACACCTGTTAAAAGGGTTTA+TGG + chr6_3:80836365-80836384 Msa0960770:CDS 35.0%
! AGACCATAAACCCTTTTAAC+AGG - chr6_3:80836371-80836390 None:intergenic 35.0%
!!! AAAACCTTGTTTTGGCGTAA+CGG - chr6_3:80836516-80836535 None:intergenic 35.0%
TAAACTCGTAAGTCCTGTTT+GGG - chr6_3:80837159-80837178 None:intergenic 35.0%
ATACTAAGAAACAGGTTTGG+AGG - chr6_3:80837217-80837236 None:intergenic 35.0%
ACCAATGTGGAAAAATAGTG+TGG - chr6_3:80837241-80837260 None:intergenic 35.0%
CTTGAAAACTTGAACCAATG+TGG - chr6_3:80837254-80837273 None:intergenic 35.0%
!!! CACATTGGTTCAAGTTTTCA+AGG + chr6_3:80837252-80837271 Msa0960770:intron 35.0%
TCCCATGCAACAACAAAAAA+AGG - chr6_3:80837380-80837399 None:intergenic 35.0%
!! TGTTTTTCTGTGAGTTCTGA+TGG + chr6_3:80837407-80837426 Msa0960770:intron 35.0%
GAAAAGGTAACTGCAGAAAA+TGG + chr6_3:80837449-80837468 Msa0960770:intron 35.0%
AAAGGTAACTGCAGAAAATG+GGG + chr6_3:80837451-80837470 Msa0960770:CDS 35.0%
AGAAAATGCTCTACATCCTT+CGG - chr6_3:80837551-80837570 None:intergenic 35.0%
! CAGTATCTACAATCCAGTTT+TGG + chr6_3:80837616-80837635 Msa0960770:CDS 35.0%
! GTATCTACAATCCAGTTTTG+GGG + chr6_3:80837618-80837637 Msa0960770:CDS 35.0%
!!! TTTTGGGACCAAAGAATACT+AGG - chr6_3:80837722-80837741 None:intergenic 35.0%
!! ATGTCTAAGTTTGTTACTGG+GGG + chr6_3:80837741-80837760 Msa0960770:intron 35.0%
! TTGTTACACGATACGCTTTT+TGG + chr6_3:80837882-80837901 Msa0960770:intron 35.0%
AAGAAGATTGCAAGAGATGT+GGG + chr6_3:80838334-80838353 Msa0960770:CDS 35.0%
! GATGTGAATGAACCTTGTTT+AGG + chr6_3:80838363-80838382 Msa0960770:CDS 35.0%
TGTAAGCTTAAAACAGCTTG+TGG - chr6_3:80838682-80838701 None:intergenic 35.0%
TTACACTGTTTAGGTGACTT+TGG - chr6_3:80838835-80838854 None:intergenic 35.0%
CTTTCTCTTCTATGCAATGT+GGG - chr6_3:80839133-80839152 None:intergenic 35.0%
GACCTTATTGGATATGTAAC+AGG + chr6_3:80839159-80839178 Msa0960770:CDS 35.0%
GAAGGCTAGGTTAGAATCTT+TGG + chr6_3:80836280-80836299 Msa0960770:intron 40.0%
TATGTTTGGTTGGAGTTGGA+GGG + chr6_3:80836655-80836674 Msa0960770:intron 40.0%
CTAAACTCGTAAGTCCTGTT+TGG - chr6_3:80837160-80837179 None:intergenic 40.0%
GGCATACTAAGAAACAGGTT+TGG - chr6_3:80837220-80837239 None:intergenic 40.0%
AGTGTGGCATACTAAGAAAC+AGG - chr6_3:80837225-80837244 None:intergenic 40.0%
!! GCCACACTATTTTTCCACAT+TGG + chr6_3:80837237-80837256 Msa0960770:intron 40.0%
GAAAATGCTCTACATCCTTC+GGG - chr6_3:80837550-80837569 None:intergenic 40.0%
TTTCAGAAGAGATTTCTGCG+CGG + chr6_3:80837570-80837589 Msa0960770:CDS 40.0%
AGAATATGGACCTGCAAAAG+TGG - chr6_3:80837652-80837671 None:intergenic 40.0%
GGTAAGAGAGCAAGAGAATA+TGG - chr6_3:80837666-80837685 None:intergenic 40.0%
TGTCAAATAGAGGCTATAGC+AGG + chr6_3:80837915-80837934 Msa0960770:intron 40.0%
GTCAAATAGAGGCTATAGCA+GGG + chr6_3:80837916-80837935 Msa0960770:intron 40.0%
TGCGTGTGTATGTATGTATG+TGG + chr6_3:80838251-80838270 Msa0960770:intron 40.0%
TGCAGGCAAAAGAAATTGTG+CGG + chr6_3:80838309-80838328 Msa0960770:intron 40.0%
GAAGAAGATTGCAAGAGATG+TGG + chr6_3:80838333-80838352 Msa0960770:CDS 40.0%
TCTCTGATCTAACAGATTCG+CGG + chr6_3:80838430-80838449 Msa0960770:intron 40.0%
TCTTTCTGATGCAGAAATGG+AGG + chr6_3:80839079-80839098 Msa0960770:intron 40.0%
CCTTTCTCTTCTATGCAATG+TGG - chr6_3:80839134-80839153 None:intergenic 40.0%
CCACATTGCATAGAAGAGAA+AGG + chr6_3:80839131-80839150 Msa0960770:CDS 40.0%
TATGCAGCTCAATATGCATG+AGG + chr6_3:80839323-80839342 Msa0960770:intron 40.0%
! CATCCTTGATTCGCTGAGAT+CGG - chr6_3:80836406-80836425 None:intergenic 45.0%
AGGGTATGTTTGGTTGGAGT+TGG + chr6_3:80836651-80836670 Msa0960770:intron 45.0%
GTATGTTTGGTTGGAGTTGG+AGG + chr6_3:80836654-80836673 Msa0960770:intron 45.0%
TTGGAGTTGGAGGGTTTAGT+TGG + chr6_3:80836664-80836683 Msa0960770:intron 45.0%
TGGAGTTGGAGGGTTTAGTT+GGG + chr6_3:80836665-80836684 Msa0960770:intron 45.0%
GATGAAGCACAAACACTCCT+CGG - chr6_3:80836900-80836919 None:intergenic 45.0%
!! GTAATCGCAAGTATCGGTGT+CGG - chr6_3:80836998-80837017 None:intergenic 45.0%
!!! GTTTGGGTTGAGGTTTTGGA+GGG - chr6_3:80837143-80837162 None:intergenic 45.0%
!!! TGTTTGGGTTGAGGTTTTGG+AGG - chr6_3:80837144-80837163 None:intergenic 45.0%
TCCAAAACCTCAACCCAAAC+AGG + chr6_3:80837143-80837162 Msa0960770:intron 45.0%
!!! TCCTGTTTGGGTTGAGGTTT+TGG - chr6_3:80837147-80837166 None:intergenic 45.0%
TGCAGAAAATGGGGAAGAAG+AGG + chr6_3:80837460-80837479 Msa0960770:CDS 45.0%
! TTCGGGTTCAGTTCAATGAG+AGG - chr6_3:80837533-80837552 None:intergenic 45.0%
TCTCATTGAACTGAACCCGA+AGG + chr6_3:80837532-80837551 Msa0960770:CDS 45.0%
!! AGTTTGTTACTGGGGGTAGA+AGG + chr6_3:80837748-80837767 Msa0960770:intron 45.0%
GCAGGCAAAAGAAATTGTGC+GGG + chr6_3:80838310-80838329 Msa0960770:intron 45.0%
CAGGCAAAAGAAATTGTGCG+GGG + chr6_3:80838311-80838330 Msa0960770:intron 45.0%
ATTCGCGGCATATTCGTAAC+AGG + chr6_3:80838445-80838464 Msa0960770:intron 45.0%
! TTTTTGTCGAGCCTGTCTCA+AGG + chr6_3:80838507-80838526 Msa0960770:intron 45.0%
ACCATAACGAACCTTGAGAC+AGG - chr6_3:80838521-80838540 None:intergenic 45.0%
CTCAAGGTTCGTTATGGTGA+AGG + chr6_3:80838523-80838542 Msa0960770:intron 45.0%
AGACTGTTTGGGAGAGCTTA+TGG + chr6_3:80838630-80838649 Msa0960770:intron 45.0%
TAGGTGACTTTGGCCCAATT+TGG - chr6_3:80838825-80838844 None:intergenic 45.0%
TTCTGATGCAGAAATGGAGG+AGG + chr6_3:80839082-80839101 Msa0960770:intron 45.0%
AAACGAAAGATGTCGCCAAC+TGG + chr6_3:80839346-80839365 Msa0960770:CDS 45.0%
AACGAAAGATGTCGCCAACT+GGG + chr6_3:80839347-80839366 Msa0960770:CDS 45.0%
GTGTGTATTGCAATCCCAGT+TGG - chr6_3:80839364-80839383 None:intergenic 45.0%
ACTGGGATTGCAATACACAC+AGG + chr6_3:80839364-80839383 Msa0960770:CDS 45.0%
CGCTCGCATGTCAGAAAACA+AGG + chr6_3:80836165-80836184 Msa0960770:CDS 50.0%
CGAATCAAGGATGTTTCCGC+CGG + chr6_3:80836413-80836432 Msa0960770:CDS 50.0%
AAACGGTAAGATCGTCGCTG+AGG - chr6_3:80836473-80836492 None:intergenic 50.0%
TACGCCGTTACGCCAAAACA+AGG + chr6_3:80836509-80836528 Msa0960770:CDS 50.0%
GGAGTTGGAGGGTTTAGTTG+GGG + chr6_3:80836666-80836685 Msa0960770:intron 50.0%
TTGGAGGGTTTAGTTGGGGA+AGG + chr6_3:80836670-80836689 Msa0960770:intron 50.0%
TGGAGGGTTTAGTTGGGGAA+GGG + chr6_3:80836671-80836690 Msa0960770:intron 50.0%
CATCGACGTGTGTCTATCAC+CGG + chr6_3:80836867-80836886 Msa0960770:intron 50.0%
ATCGACGTGTGTCTATCACC+GGG + chr6_3:80836868-80836887 Msa0960770:intron 50.0%
AACACTCCTCGGATTACTCC+CGG - chr6_3:80836889-80836908 None:intergenic 50.0%
ACACGACACATGTCGGACAT+CGG - chr6_3:80836975-80836994 None:intergenic 50.0%
!! CGTAAGTCCTGTTTGGGTTG+AGG - chr6_3:80837153-80837172 None:intergenic 50.0%
! TCAATGAGAGGTGCATTCGC+AGG - chr6_3:80837521-80837540 None:intergenic 50.0%
TGGCAGCATATCCCCAAAAC+TGG - chr6_3:80837632-80837651 None:intergenic 50.0%
!!! GGATATGCTGCCACTTTTGC+AGG + chr6_3:80837639-80837658 Msa0960770:CDS 50.0%
! TCAGCGTGTCACTCAAGCAA+TGG + chr6_3:80838481-80838500 Msa0960770:intron 50.0%
GCCTGTCTCAAGGTTCGTTA+TGG + chr6_3:80838517-80838536 Msa0960770:intron 50.0%
AGGTGCGAGAGAACAAGGAA+TGG + chr6_3:80839102-80839121 Msa0960770:CDS 50.0%
AGGAAGGTCTTCGAGCGTCA+CGG - chr6_3:80836453-80836472 None:intergenic 55.0%
GGTAAGATCGTCGCTGAGGA+AGG - chr6_3:80836469-80836488 None:intergenic 55.0%
AGGGTTTAGTTGGGGAAGGG+AGG + chr6_3:80836674-80836693 Msa0960770:intron 55.0%
GGGTTTAGTTGGGGAAGGGA+GGG + chr6_3:80836675-80836694 Msa0960770:intron 55.0%
! TGTGGGTGTCGTGTCGATGT+CGG + chr6_3:80836843-80836862 Msa0960770:intron 55.0%
CTATCACCGGGAGTAATCCG+AGG + chr6_3:80836880-80836899 Msa0960770:intron 55.0%
CACGACACATGTCGGACATC+GGG - chr6_3:80836974-80836993 None:intergenic 55.0%
GTGTCGGACACGACACATGT+CGG - chr6_3:80836982-80837001 None:intergenic 55.0%
ATTCGCTGAGATCGGCGCAC+TGG - chr6_3:80836398-80836417 None:intergenic 60.0%
! GCGCCGATCTCAGCGAATCA+AGG + chr6_3:80836400-80836419 Msa0960770:CDS 60.0%
AAGGTCTTCGAGCGTCACGG+TGG - chr6_3:80836450-80836469 None:intergenic 60.0%
CGCTGCGATAGCAAGGGTAG+AGG + chr6_3:80837593-80837612 Msa0960770:CDS 60.0%
! GGAGGAGGTGCGAGAGAACA+AGG + chr6_3:80839097-80839116 Msa0960770:CDS 60.0%
CACGGTGGCAGTTGCGGTAC+CGG - chr6_3:80836435-80836454 None:intergenic 65.0%
GAGCGTCACGGTGGCAGTTG+CGG - chr6_3:80836441-80836460 None:intergenic 65.0%
! GGTGGCAGTTGCGGTACCGG+CGG - chr6_3:80836432-80836451 None:intergenic 70.0%
TGCGCGGCGCTGCGATAGCA+AGG + chr6_3:80837586-80837605 Msa0960770:CDS 70.0%
GCGCGGCGCTGCGATAGCAA+GGG + chr6_3:80837587-80837606 Msa0960770:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 80836043 80839390 80836043 ID=Msa0960770;Name=Msa0960770
chr6_3 mRNA 80836043 80839390 80836043 ID=Msa0960770-mRNA-1;Parent=Msa0960770;Name=Msa0960770-mRNA-1;_AED=0.07;_eAED=0.07;_QI=66|0.8|0.83|1|1|1|6|0|251
chr6_3 exon 80836043 80836186 80836043 ID=Msa0960770-mRNA-1:exon:14504;Parent=Msa0960770-mRNA-1
chr6_3 exon 80836284 80836530 80836284 ID=Msa0960770-mRNA-1:exon:14505;Parent=Msa0960770-mRNA-1
chr6_3 exon 80837450 80837660 80837450 ID=Msa0960770-mRNA-1:exon:14506;Parent=Msa0960770-mRNA-1
chr6_3 exon 80838314 80838384 80838314 ID=Msa0960770-mRNA-1:exon:14507;Parent=Msa0960770-mRNA-1
chr6_3 exon 80839093 80839180 80839093 ID=Msa0960770-mRNA-1:exon:14508;Parent=Msa0960770-mRNA-1
chr6_3 exon 80839330 80839390 80839330 ID=Msa0960770-mRNA-1:exon:14509;Parent=Msa0960770-mRNA-1
chr6_3 five_prime_UTR 80836043 80836108 80836043 ID=Msa0960770-mRNA-1:five_prime_utr;Parent=Msa0960770-mRNA-1
chr6_3 CDS 80836109 80836186 80836109 ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1
chr6_3 CDS 80836284 80836530 80836284 ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1
chr6_3 CDS 80837450 80837660 80837450 ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1
chr6_3 CDS 80838314 80838384 80838314 ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1
chr6_3 CDS 80839093 80839180 80839093 ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1
chr6_3 CDS 80839330 80839390 80839330 ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1
Gene Sequence

>Msa0960770

ATGGGGAAAATGAAAATGAAAGAAACTTCAAAATCCGATTACGAATCTCTCAGAAACGCTCGCATGTCAGAAAACAAGGCTAGGTTAGAATCTTTGGGTATTTTGAATAAAGTTTCGAATCTTCGAGAAGCTTCTACTCCAACTAAGAAACAACAACGTACACCTGTTAAAAGGGTTTATGGTCTTACTCCAGTGCGCCGATCTCAGCGAATCAAGGATGTTTCCGCCGGTACCGCAACTGCCACCGTGACGCTCGAAGACCTTCCTCAGCGACGATCTTACCGTTTGAAAAGTAGTTTCAGCTACGCCGTTACGCCAAAACAAGAAAAGGTAACTGCAGAAAATGGGGAAGAAGAGGAGAAGAGCTGTATTGTAACTACTGATGAGAAAAGGCCTGCGAATGCACCTCTCATTGAACTGAACCCGAAGGATGTAGAGCATTTTCTTTCAGAAGAGATTTCTGCGCGGCGCTGCGATAGCAAGGGTAGAGGCAGTATCTACAATCCAGTTTTGGGGATATGCTGCCACTTTTGCAGGCAAAAGAAATTGTGCGGGGAAGAAGATTGCAAGAGATGTGGGAATTGTGATGTGAATGAACCTTGTTTAGAAATGGAGGAGGTGCGAGAGAACAAGGAATGGATGTGCCCACATTGCATAGAAGAGAAAGGAATAAGACCTTATTGGATATGTAACAGCTCAATATGCATGAGGAAACGAAAGATGTCGCCAACTGGGATTGCAATACACACAGGTTAG

Protein sequence

>Msa0960770

MGKMKMKETSKSDYESLRNARMSENKARLESLGILNKVSNLREASTPTKKQQRTPVKRVYGLTPVRRSQRIKDVSAGTATATVTLEDLPQRRSYRLKSSFSYAVTPKQEKVTAENGEEEEKSCIVTTDEKRPANAPLIELNPKDVEHFLSEEISARRCDSKGRGSIYNPVLGICCHFCRQKKLCGEEDCKRCGNCDVNEPCLEMEEVRENKEWMCPHCIEEKGIRPYWICNSSICMRKRKMSPTGIAIHTG*