Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0016040 | Msa0960770 | 0.811245 | 7.708504e-51 | -8.615850e-47 |
Msa0019930 | Msa0960770 | 0.804366 | 2.235595e-49 | -8.615850e-47 |
Msa0027280 | Msa0960770 | 0.808216 | 3.454382e-50 | -8.615850e-47 |
Msa0034830 | Msa0960770 | 0.802923 | 4.456460e-49 | -8.615850e-47 |
Msa0035140 | Msa0960770 | 0.823380 | 1.429359e-53 | -8.615850e-47 |
Msa0056180 | Msa0960770 | 0.843769 | 1.142818e-58 | -8.615850e-47 |
Msa0067060 | Msa0960770 | 0.802503 | 5.438730e-49 | -8.615850e-47 |
Msa0068150 | Msa0960770 | 0.847948 | 8.372476e-60 | -8.615850e-47 |
Msa0075530 | Msa0960770 | 0.801179 | 1.017519e-48 | -8.615850e-47 |
Msa0091360 | Msa0960770 | 0.813146 | 2.966913e-51 | -8.615850e-47 |
Msa0606100 | Msa0960770 | 0.821398 | 4.123874e-53 | -8.615850e-47 |
Msa0620500 | Msa0960770 | 0.805379 | 1.373353e-49 | -8.615850e-47 |
Msa0621710 | Msa0960770 | 0.821747 | 3.425325e-53 | -8.615850e-47 |
Msa0625620 | Msa0960770 | 0.816041 | 6.782831e-52 | -8.615850e-47 |
Msa0647050 | Msa0960770 | 0.814869 | 1.236377e-51 | -8.615850e-47 |
Msa0659150 | Msa0960770 | 0.829916 | 3.938461e-55 | -8.615850e-47 |
Msa0666700 | Msa0960770 | 0.823067 | 1.690538e-53 | -8.615850e-47 |
Msa0668900 | Msa0960770 | 0.800761 | 1.238145e-48 | -8.615850e-47 |
Msa0698730 | Msa0960770 | 0.836739 | 7.843001e-57 | -8.615850e-47 |
Msa0703600 | Msa0960770 | 0.801974 | 6.988126e-49 | -8.615850e-47 |
Msa0709200 | Msa0960770 | 0.801701 | 7.951065e-49 | -8.615850e-47 |
Msa0709440 | Msa0960770 | 0.805621 | 1.222053e-49 | -8.615850e-47 |
Msa0716480 | Msa0960770 | 0.815056 | 1.123786e-51 | -8.615850e-47 |
Msa0717900 | Msa0960770 | 0.806437 | 8.230151e-50 | -8.615850e-47 |
Msa0718040 | Msa0960770 | 0.815286 | 9.991390e-52 | -8.615850e-47 |
Msa0735780 | Msa0960770 | 0.801653 | 8.136077e-49 | -8.615850e-47 |
Msa0740710 | Msa0960770 | 0.833158 | 6.261870e-56 | -8.615850e-47 |
Msa0773630 | Msa0960770 | 0.811042 | 8.532744e-51 | -8.615850e-47 |
Msa0778600 | Msa0960770 | 0.803302 | 3.719303e-49 | -8.615850e-47 |
Msa0780910 | Msa0960770 | 0.829512 | 4.938121e-55 | -8.615850e-47 |
Msa0811020 | Msa0960770 | 0.814016 | 1.909630e-51 | -8.615850e-47 |
Msa0821160 | Msa0960770 | 0.833255 | 5.923549e-56 | -8.615850e-47 |
Msa0837460 | Msa0960770 | 0.813994 | 1.930606e-51 | -8.615850e-47 |
Msa0122330 | Msa0960770 | 0.810860 | 9.342334e-51 | -8.615850e-47 |
Msa0127680 | Msa0960770 | 0.809779 | 1.598433e-50 | -8.615850e-47 |
Msa0140380 | Msa0960770 | 0.814378 | 1.588208e-51 | -8.615850e-47 |
Msa0156050 | Msa0960770 | 0.800487 | 1.408248e-48 | -8.615850e-47 |
Msa0159590 | Msa0960770 | 0.810425 | 1.160263e-50 | -8.615850e-47 |
Msa0190570 | Msa0960770 | 0.809835 | 1.554800e-50 | -8.615850e-47 |
Msa0194630 | Msa0960770 | 0.811143 | 8.111799e-51 | -8.615850e-47 |
Msa0373500 | Msa0960770 | 0.835756 | 1.394419e-56 | -8.615850e-47 |
Msa0383000 | Msa0960770 | 0.812911 | 3.340334e-51 | -8.615850e-47 |
Msa0422050 | Msa0960770 | 0.841607 | 4.288836e-58 | -8.615850e-47 |
Msa0433150 | Msa0960770 | 0.816033 | 6.811199e-52 | -8.615850e-47 |
Msa0456670 | Msa0960770 | 0.816918 | 4.316167e-52 | -8.615850e-47 |
Msa0468620 | Msa0960770 | 0.822274 | 2.585745e-53 | -8.615850e-47 |
Msa0468700 | Msa0960770 | 0.817626 | 2.991073e-52 | -8.615850e-47 |
Msa0481890 | Msa0960770 | 0.807021 | 6.194362e-50 | -8.615850e-47 |
Msa0269210 | Msa0960770 | 0.802693 | 4.969763e-49 | -8.615850e-47 |
Msa0507020 | Msa0960770 | 0.813838 | 2.090241e-51 | -8.615850e-47 |
Msa0507920 | Msa0960770 | 0.802580 | 5.244295e-49 | -8.615850e-47 |
Msa0514500 | Msa0960770 | 0.824404 | 8.220171e-54 | -8.615850e-47 |
Msa0514580 | Msa0960770 | 0.811324 | 7.410390e-51 | -8.615850e-47 |
Msa0524520 | Msa0960770 | 0.812769 | 3.587993e-51 | -8.615850e-47 |
Msa0531960 | Msa0960770 | 0.822874 | 1.875688e-53 | -8.615850e-47 |
Msa0550590 | Msa0960770 | 0.811521 | 6.717405e-51 | -8.615850e-47 |
Msa0561560 | Msa0960770 | 0.809914 | 1.495407e-50 | -8.615850e-47 |
Msa0563740 | Msa0960770 | 0.800284 | 1.549271e-48 | -8.615850e-47 |
Msa0567170 | Msa0960770 | 0.804718 | 1.888022e-49 | -8.615850e-47 |
Msa0580200 | Msa0960770 | 0.809881 | 1.519977e-50 | -8.615850e-47 |
Msa0900760 | Msa0960770 | 0.801343 | 9.416620e-49 | -8.615850e-47 |
Msa0909760 | Msa0960770 | 0.830160 | 3.434209e-55 | -8.615850e-47 |
Msa0921980 | Msa0960770 | 0.848145 | 7.386916e-60 | -8.615850e-47 |
Msa0960770 | Msa0966320 | 0.808353 | 3.229497e-50 | -8.615850e-47 |
Msa0960770 | Msa0966480 | 0.817190 | 3.748824e-52 | -8.615850e-47 |
Msa0960770 | Msa1008670 | 0.811329 | 7.393312e-51 | -8.615850e-47 |
Msa0960770 | Msa1033920 | 0.821599 | 3.707108e-53 | -8.615850e-47 |
Msa0960770 | Msa1035650 | 0.814142 | 1.790963e-51 | -8.615850e-47 |
Msa0960770 | Msa1037540 | 0.803459 | 3.451855e-49 | -8.615850e-47 |
Msa0960770 | Msa1081390 | 0.801545 | 8.559111e-49 | -8.615850e-47 |
Msa0960770 | Msa1082380 | 0.805649 | 1.205443e-49 | -8.615850e-47 |
Msa0960770 | Msa1084530 | 0.808426 | 3.115880e-50 | -8.615850e-47 |
Msa0960770 | Msa1090140 | 0.800146 | 1.652519e-48 | -8.615850e-47 |
Msa0960770 | Msa1116190 | 0.834498 | 2.895251e-56 | -8.615850e-47 |
Msa0960770 | Msa1116220 | 0.803491 | 3.398639e-49 | -8.615850e-47 |
Msa0960770 | Msa1116660 | 0.843757 | 1.151361e-58 | -8.615850e-47 |
Msa0960770 | Msa1116740 | 0.834097 | 3.649921e-56 | -8.615850e-47 |
Msa0960770 | Msa1125820 | 0.809226 | 2.100971e-50 | -8.615850e-47 |
Msa0960770 | Msa1125990 | 0.809813 | 1.571807e-50 | -8.615850e-47 |
Msa0960770 | Msa1127280 | 0.817410 | 3.346190e-52 | -8.615850e-47 |
Msa0960770 | Msa1130420 | 0.806652 | 7.411863e-50 | -8.615850e-47 |
Msa0960770 | Msa1162880 | 0.843318 | 1.508074e-58 | -8.615850e-47 |
Msa0960770 | Msa1165480 | 0.816731 | 4.754897e-52 | -8.615850e-47 |
Msa0960770 | Msa1171290 | 0.804146 | 2.485303e-49 | -8.615850e-47 |
Msa0960770 | Msa1190390 | 0.818756 | 1.660528e-52 | -8.615850e-47 |
Msa0960770 | Msa1215980 | 0.804753 | 1.856507e-49 | -8.615850e-47 |
Msa0960770 | Msa1218820 | 0.808266 | 3.369754e-50 | -8.615850e-47 |
Msa0960770 | Msa1244240 | 0.830133 | 3.486536e-55 | -8.615850e-47 |
Msa0960770 | Msa1254540 | 0.817057 | 4.017084e-52 | -8.615850e-47 |
Msa0960770 | Msa1263780 | 0.808440 | 3.093370e-50 | -8.615850e-47 |
Msa0960770 | Msa1308820 | 0.813393 | 2.618967e-51 | -8.615850e-47 |
Msa0960770 | Msa1338210 | 0.813398 | 2.611780e-51 | -8.615850e-47 |
Msa0960770 | Msa1343180 | 0.829131 | 6.111314e-55 | -8.615850e-47 |
Msa0960770 | Msa1364410 | 0.803138 | 4.022379e-49 | -8.615850e-47 |
Msa0960770 | Msa1387440 | 0.811716 | 6.092034e-51 | -8.615850e-47 |
Msa0960770 | Msa1426110 | 0.807771 | 4.294195e-50 | -8.615850e-47 |
Msa0960770 | Msa1446100 | 0.806929 | 6.478626e-50 | -8.615850e-47 |
Msa0960770 | Msa1447170 | 0.815743 | 7.906119e-52 | -8.615850e-47 |
Msa0960770 | Msa1450190 | 0.827018 | 1.972721e-54 | -8.615850e-47 |
Msa0960770 | Msa1454010 | 0.855425 | 6.362813e-62 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0960770 | MtrunA17_Chr6g0479091 | 83.813 | 278 | 15 | 2 | 4 | 251 | 1 | 278 | 3.48e-165 | 458 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0960770 | AT4G37110.1 | 30.196 | 255 | 132 | 9 | 12 | 247 | 29 | 256 | 1.69e-16 | 78.6 |
Msa0960770 | AT4G37110.2 | 28.685 | 251 | 128 | 9 | 12 | 247 | 29 | 243 | 4.88e-13 | 68.6 |
Find 59 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAAGGTAACTGCAGAAAA+TGG | 0.213288 | 6_3:+80837449 | Msa0960770:intron |
AACAACGTACACCTGTTAAA+AGG | 0.219507 | 6_3:+80836357 | Msa0960770:CDS |
GAAGGCTAGGTTAGAATCTT+TGG | 0.233193 | 6_3:+80836280 | Msa0960770:intron |
ACACCTGTTAAAAGGGTTTA+TGG | 0.240841 | 6_3:+80836365 | Msa0960770:CDS |
CAGTATCTACAATCCAGTTT+TGG | 0.310852 | 6_3:+80837616 | Msa0960770:CDS |
AGAAAGGAATAAGACCTTAT+TGG | 0.336569 | 6_3:+80839147 | Msa0960770:CDS |
GTACGTTGTTGTTTCTTAGT+TGG | 0.358362 | 6_3:-80836344 | None:intergenic |
GACCTTATTGGATATGTAAC+AGG | 0.372337 | 6_3:+80839159 | Msa0960770:CDS |
AAGGCTAGGTTAGAATCTTT+GGG | 0.379877 | 6_3:+80836281 | Msa0960770:intron |
CACGGTGGCAGTTGCGGTAC+CGG | 0.381418 | 6_3:-80836432 | None:intergenic |
AGAAAATGCTCTACATCCTT+CGG | 0.383546 | 6_3:-80837548 | None:intergenic |
AAACGAAAGATGTCGCCAAC+TGG | 0.392964 | 6_3:+80839346 | Msa0960770:CDS |
TGGCAGCATATCCCCAAAAC+TGG | 0.395004 | 6_3:-80837629 | None:intergenic |
GAAAATGCTCTACATCCTTC+GGG | 0.396073 | 6_3:-80837547 | None:intergenic |
AAAAGGTAACTGCAGAAAAT+GGG | 0.406202 | 6_3:+80837450 | Msa0960770:CDS |
TGCGCGGCGCTGCGATAGCA+AGG | 0.412089 | 6_3:+80837586 | Msa0960770:CDS |
ACAACGTACACCTGTTAAAA+GGG | 0.463307 | 6_3:+80836358 | Msa0960770:CDS |
CATCCTTGATTCGCTGAGAT+CGG | 0.480008 | 6_3:-80836403 | None:intergenic |
TACCTGTTACATATCCAATA+AGG | 0.483081 | 6_3:-80839161 | None:intergenic |
GATGTGAATGAACCTTGTTT+AGG | 0.485053 | 6_3:+80838363 | Msa0960770:CDS |
GTTTCTGAGAGATTCGTAAT+CGG | 0.501013 | 6_3:-80836143 | None:intergenic |
CCTTTCTCTTCTATGCAATG+TGG | 0.502029 | 6_3:-80839131 | None:intergenic |
CGCTGCGATAGCAAGGGTAG+AGG | 0.503993 | 6_3:+80837593 | Msa0960770:CDS |
CGCTCGCATGTCAGAAAACA+AGG | 0.512896 | 6_3:+80836165 | Msa0960770:CDS |
AAGAAGATTGCAAGAGATGT+GGG | 0.513623 | 6_3:+80838334 | Msa0960770:CDS |
CTTTCTCTTCTATGCAATGT+GGG | 0.517606 | 6_3:-80839130 | None:intergenic |
ATTCGCTGAGATCGGCGCAC+TGG | 0.525686 | 6_3:-80836395 | None:intergenic |
GGTAAGATCGTCGCTGAGGA+AGG | 0.529353 | 6_3:-80836466 | None:intergenic |
TTGTAACTACTGATGAGAAA+AGG | 0.533068 | 6_3:+80837495 | Msa0960770:CDS |
GCGCCGATCTCAGCGAATCA+AGG | 0.543159 | 6_3:+80836400 | Msa0960770:CDS |
GCAGGCAAAAGAAATTGTGC+GGG | 0.547067 | 6_3:+80838310 | Msa0960770:intron |
AGGTGCGAGAGAACAAGGAA+TGG | 0.549633 | 6_3:+80839102 | Msa0960770:CDS |
GAGCGTCACGGTGGCAGTTG+CGG | 0.550391 | 6_3:-80836438 | None:intergenic |
AGAATATGGACCTGCAAAAG+TGG | 0.553469 | 6_3:-80837649 | None:intergenic |
GAAGAAGATTGCAAGAGATG+TGG | 0.555689 | 6_3:+80838333 | Msa0960770:CDS |
TCAATGAGAGGTGCATTCGC+AGG | 0.556862 | 6_3:-80837518 | None:intergenic |
GGAGGAGGTGCGAGAGAACA+AGG | 0.559477 | 6_3:+80839097 | Msa0960770:CDS |
TGCAGAAAATGGGGAAGAAG+AGG | 0.565772 | 6_3:+80837460 | Msa0960770:CDS |
TCTTTCTGATGCAGAAATGG+AGG | 0.571930 | 6_3:+80839079 | Msa0960770:intron |
TACGCCGTTACGCCAAAACA+AGG | 0.575617 | 6_3:+80836509 | Msa0960770:CDS |
CCACATTGCATAGAAGAGAA+AGG | 0.579806 | 6_3:+80839131 | Msa0960770:CDS |
AACGAAAGATGTCGCCAACT+GGG | 0.580211 | 6_3:+80839347 | Msa0960770:CDS |
GCGCGGCGCTGCGATAGCAA+GGG | 0.581578 | 6_3:+80837587 | Msa0960770:CDS |
TTCTGATGCAGAAATGGAGG+AGG | 0.588072 | 6_3:+80839082 | Msa0960770:intron |
CGAATCAAGGATGTTTCCGC+CGG | 0.595951 | 6_3:+80836413 | Msa0960770:CDS |
AGGAAGGTCTTCGAGCGTCA+CGG | 0.599369 | 6_3:-80836450 | None:intergenic |
TGCAGGCAAAAGAAATTGTG+CGG | 0.602252 | 6_3:+80838309 | Msa0960770:intron |
AAAGGTAACTGCAGAAAATG+GGG | 0.611139 | 6_3:+80837451 | Msa0960770:CDS |
TTCGGGTTCAGTTCAATGAG+AGG | 0.620452 | 6_3:-80837530 | None:intergenic |
GGTGGCAGTTGCGGTACCGG+CGG | 0.628714 | 6_3:-80836429 | None:intergenic |
AATCAAATCTTACCTAAACA+AGG | 0.650664 | 6_3:-80838375 | None:intergenic |
GTGTGTATTGCAATCCCAGT+TGG | 0.660496 | 6_3:-80839361 | None:intergenic |
TCTCATTGAACTGAACCCGA+AGG | 0.675873 | 6_3:+80837532 | Msa0960770:CDS |
TATGCAGCTCAATATGCATG+AGG | 0.683395 | 6_3:+80839323 | Msa0960770:intron |
AAACGGTAAGATCGTCGCTG+AGG | 0.683773 | 6_3:-80836470 | None:intergenic |
ACTGGGATTGCAATACACAC+AGG | 0.706206 | 6_3:+80839364 | Msa0960770:CDS |
CAGGCAAAAGAAATTGTGCG+GGG | 0.721318 | 6_3:+80838311 | Msa0960770:intron |
AAGGTCTTCGAGCGTCACGG+TGG | 0.749237 | 6_3:-80836447 | None:intergenic |
TTTCAGAAGAGATTTCTGCG+CGG | 0.814056 | 6_3:+80837570 | Msa0960770:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCACAAAAAAAAAAAAAAA+TGG | + | chr6_3:80836090-80836109 | Msa0960770:exon | 10.0% |
!! | TCACAAAAAAAAAAAAAAAT+GGG | + | chr6_3:80836091-80836110 | Msa0960770:exon | 10.0% |
!! | TTTGAAAAATATATATTACA+TGG | + | chr6_3:80836609-80836628 | Msa0960770:intron | 10.0% |
!! | AATGTTTGTTTAAAAAAATT+AGG | + | chr6_3:80836716-80836735 | Msa0960770:intron | 10.0% |
!! | CACAAAAAAAAAAAAAAATG+GGG | + | chr6_3:80836092-80836111 | Msa0960770:exon | 15.0% |
!! | TAATAATAATGAAGAGTTTA+GGG | - | chr6_3:80836206-80836225 | None:intergenic | 15.0% |
!! | ATAATAATAATGAAGAGTTT+AGG | - | chr6_3:80836207-80836226 | None:intergenic | 15.0% |
!!! | TGATTTTATCAAATTATTAG+CGG | - | chr6_3:80836801-80836820 | None:intergenic | 15.0% |
!! | AAAATTAAAAGAACATCTAA+TGG | - | chr6_3:80837093-80837112 | None:intergenic | 15.0% |
!! | CTAATCTAAATATTAACAAT+TGG | - | chr6_3:80837322-80837341 | None:intergenic | 15.0% |
!!! | CAATTTAGTTGATTTTTAAA+TGG | - | chr6_3:80838168-80838187 | None:intergenic | 15.0% |
!!! | TCTATTTTTTGTTATAAAAC+TGG | + | chr6_3:80838740-80838759 | Msa0960770:intron | 15.0% |
!! | TATCAATTAAGGTAATAAAA+TGG | - | chr6_3:80839305-80839324 | None:intergenic | 15.0% |
!!! | TTTTTTTTTTGTGATGTGTT+GGG | - | chr6_3:80836085-80836104 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTTGTGATGTGT+TGG | - | chr6_3:80836086-80836105 | None:intergenic | 20.0% |
!! | ATTTAGTGTAATAATATGTG+TGG | + | chr6_3:80836825-80836844 | Msa0960770:intron | 20.0% |
!! | TTTAGTGTAATAATATGTGT+GGG | + | chr6_3:80836826-80836845 | Msa0960770:intron | 20.0% |
!! | TAAGATATATGTGAAAATGA+AGG | + | chr6_3:80837284-80837303 | Msa0960770:intron | 20.0% |
!! | TTAGATTAGATATAGATTAG+AGG | + | chr6_3:80837333-80837352 | Msa0960770:intron | 20.0% |
!! | TACAAAATATTGTCAAATAG+AGG | + | chr6_3:80837905-80837924 | Msa0960770:intron | 20.0% |
!! | TGATAACATCAATGTATATA+AGG | + | chr6_3:80838074-80838093 | Msa0960770:intron | 20.0% |
!!! | ACTCTTTTAACATGTTATTT+AGG | - | chr6_3:80838214-80838233 | None:intergenic | 20.0% |
!!! | ATTAAGTTGTTTATCCAAAT+TGG | + | chr6_3:80838808-80838827 | Msa0960770:intron | 20.0% |
!!! | TTAAGTTGTTTATCCAAATT+GGG | + | chr6_3:80838809-80838828 | Msa0960770:intron | 20.0% |
!!! | ATGTGTATAGAATGTTTTAA+AGG | + | chr6_3:80839246-80839265 | Msa0960770:intron | 20.0% |
!! | TATGTTGATGAATGAATTGA+AGG | + | chr6_3:80836262-80836281 | Msa0960770:intron | 25.0% |
!!! | GCAAAATAAAAACCTTGTTT+TGG | - | chr6_3:80836524-80836543 | None:intergenic | 25.0% |
! | AAACAGAGACAAGAAAATTA+GGG | - | chr6_3:80836546-80836565 | None:intergenic | 25.0% |
! | TCTTTGCATTAGCATATTAA+GGG | + | chr6_3:80836632-80836651 | Msa0960770:intron | 25.0% |
!!! | TCTACTTTTGTGTAGAAAAA+GGG | - | chr6_3:80837687-80837706 | None:intergenic | 25.0% |
!!! | ATCTACTTTTGTGTAGAAAA+AGG | - | chr6_3:80837688-80837707 | None:intergenic | 25.0% |
! | TATAATGACCTAGTATTCTT+TGG | + | chr6_3:80837711-80837730 | Msa0960770:intron | 25.0% |
!! | GTAACAAACTTAGACATTTT+GGG | - | chr6_3:80837738-80837757 | None:intergenic | 25.0% |
!! | AGTAACAAACTTAGACATTT+TGG | - | chr6_3:80837739-80837758 | None:intergenic | 25.0% |
!!! | AAAATGTCTAAGTTTGTTAC+TGG | + | chr6_3:80837738-80837757 | Msa0960770:intron | 25.0% |
!!! | AAATGTCTAAGTTTGTTACT+GGG | + | chr6_3:80837739-80837758 | Msa0960770:intron | 25.0% |
! | ATAACACTGTTGTTAAATAG+TGG | + | chr6_3:80837804-80837823 | Msa0960770:intron | 25.0% |
!!! | TTAAACATAACCGCTATTTT+TGG | + | chr6_3:80837967-80837986 | Msa0960770:intron | 25.0% |
!! | TAGCATTTTACCAAAAATAG+CGG | - | chr6_3:80837980-80837999 | None:intergenic | 25.0% |
! | AAATGCTATTGACAAAATTG+AGG | + | chr6_3:80837992-80838011 | Msa0960770:intron | 25.0% |
! | AATCAAATCTTACCTAAACA+AGG | - | chr6_3:80838378-80838397 | None:intergenic | 25.0% |
! | AGACATGCTCAAATAAATAA+AGG | + | chr6_3:80838557-80838576 | Msa0960770:intron | 25.0% |
!! | CAAATAAATAAAGGCATGTT+AGG | + | chr6_3:80838566-80838585 | Msa0960770:intron | 25.0% |
! | TGATGGTATCTAAATTCAAA+AGG | - | chr6_3:80839212-80839231 | None:intergenic | 25.0% |
!! | AGCTGAAACTACTTTTCAAA+CGG | - | chr6_3:80836490-80836509 | None:intergenic | 30.0% |
CAAACAGAGACAAGAAAATT+AGG | - | chr6_3:80836547-80836566 | None:intergenic | 30.0% | |
GTCTTTGCATTAGCATATTA+AGG | + | chr6_3:80836631-80836650 | Msa0960770:intron | 30.0% | |
! | TAGCATATTAAGGGTATGTT+TGG | + | chr6_3:80836641-80836660 | Msa0960770:intron | 30.0% |
! | ATATTAAGGGTATGTTTGGT+TGG | + | chr6_3:80836645-80836664 | Msa0960770:intron | 30.0% |
TATCAAATTATTAGCGGTGA+CGG | - | chr6_3:80836795-80836814 | None:intergenic | 30.0% | |
TTCAATGTAATCGCAAGTAT+CGG | - | chr6_3:80837004-80837023 | None:intergenic | 30.0% | |
!!! | AACCTTTTTTTGTTGTTGCA+TGG | + | chr6_3:80837375-80837394 | Msa0960770:intron | 30.0% |
!!! | ACCTTTTTTTGTTGTTGCAT+GGG | + | chr6_3:80837376-80837395 | Msa0960770:intron | 30.0% |
ACTGAATTACGTTACAGAAA+AGG | + | chr6_3:80837433-80837452 | Msa0960770:intron | 30.0% | |
AAAAGGTAACTGCAGAAAAT+GGG | + | chr6_3:80837450-80837469 | Msa0960770:CDS | 30.0% | |
TTGTAACTACTGATGAGAAA+AGG | + | chr6_3:80837495-80837514 | Msa0960770:CDS | 30.0% | |
! | AGTATCTACAATCCAGTTTT+GGG | + | chr6_3:80837617-80837636 | Msa0960770:CDS | 30.0% |
!! | AATGTCTAAGTTTGTTACTG+GGG | + | chr6_3:80837740-80837759 | Msa0960770:intron | 30.0% |
!!! | AACTGCTATTTTCTGAAATC+CGG | + | chr6_3:80838048-80838067 | Msa0960770:intron | 30.0% |
TACATTGATGTTATCAATGC+CGG | - | chr6_3:80838070-80838089 | None:intergenic | 30.0% | |
AATCGTAAAGAGTCTATTAC+AGG | - | chr6_3:80838104-80838123 | None:intergenic | 30.0% | |
!!! | GACTAGCTTGTTTTTTCAAA+AGG | - | chr6_3:80838192-80838211 | None:intergenic | 30.0% |
GCAATGAAAAACATAAATGC+AGG | + | chr6_3:80838292-80838311 | Msa0960770:intron | 30.0% | |
AGTCTCAGAAATGTTTATGT+CGG | - | chr6_3:80838615-80838634 | None:intergenic | 30.0% | |
!! | TAAACATTTCTGAGACTGTT+TGG | + | chr6_3:80838618-80838637 | Msa0960770:intron | 30.0% |
!! | AAACATTTCTGAGACTGTTT+GGG | + | chr6_3:80838619-80838638 | Msa0960770:intron | 30.0% |
TTGATCTGTTTACACTGTTT+AGG | - | chr6_3:80838844-80838863 | None:intergenic | 30.0% | |
ATCAAATAAACGTGACATCT+AGG | - | chr6_3:80838909-80838928 | None:intergenic | 30.0% | |
ATATATTCAAAGAGAGAGCA+TGG | + | chr6_3:80838959-80838978 | Msa0960770:intron | 30.0% | |
TTATCTTTCTGATGCAGAAA+TGG | + | chr6_3:80839076-80839095 | Msa0960770:intron | 30.0% | |
AGAAAGGAATAAGACCTTAT+TGG | + | chr6_3:80839147-80839166 | Msa0960770:CDS | 30.0% | |
TACCTGTTACATATCCAATA+AGG | - | chr6_3:80839164-80839183 | None:intergenic | 30.0% | |
CATTTATGTCTGCATATTGA+TGG | - | chr6_3:80839229-80839248 | None:intergenic | 30.0% | |
ATTGAGCTGCATATCAATTA+AGG | - | chr6_3:80839316-80839335 | None:intergenic | 30.0% | |
! | GTTTCTGAGAGATTCGTAAT+CGG | - | chr6_3:80836146-80836165 | None:intergenic | 35.0% |
TGATGAATGAATTGAAGGCT+AGG | + | chr6_3:80836267-80836286 | Msa0960770:intron | 35.0% | |
AAGGCTAGGTTAGAATCTTT+GGG | + | chr6_3:80836281-80836300 | Msa0960770:intron | 35.0% | |
!! | GTACGTTGTTGTTTCTTAGT+TGG | - | chr6_3:80836347-80836366 | None:intergenic | 35.0% |
AACAACGTACACCTGTTAAA+AGG | + | chr6_3:80836357-80836376 | Msa0960770:CDS | 35.0% | |
ACAACGTACACCTGTTAAAA+GGG | + | chr6_3:80836358-80836377 | Msa0960770:CDS | 35.0% | |
ACACCTGTTAAAAGGGTTTA+TGG | + | chr6_3:80836365-80836384 | Msa0960770:CDS | 35.0% | |
! | AGACCATAAACCCTTTTAAC+AGG | - | chr6_3:80836371-80836390 | None:intergenic | 35.0% |
!!! | AAAACCTTGTTTTGGCGTAA+CGG | - | chr6_3:80836516-80836535 | None:intergenic | 35.0% |
TAAACTCGTAAGTCCTGTTT+GGG | - | chr6_3:80837159-80837178 | None:intergenic | 35.0% | |
ATACTAAGAAACAGGTTTGG+AGG | - | chr6_3:80837217-80837236 | None:intergenic | 35.0% | |
ACCAATGTGGAAAAATAGTG+TGG | - | chr6_3:80837241-80837260 | None:intergenic | 35.0% | |
CTTGAAAACTTGAACCAATG+TGG | - | chr6_3:80837254-80837273 | None:intergenic | 35.0% | |
!!! | CACATTGGTTCAAGTTTTCA+AGG | + | chr6_3:80837252-80837271 | Msa0960770:intron | 35.0% |
TCCCATGCAACAACAAAAAA+AGG | - | chr6_3:80837380-80837399 | None:intergenic | 35.0% | |
!! | TGTTTTTCTGTGAGTTCTGA+TGG | + | chr6_3:80837407-80837426 | Msa0960770:intron | 35.0% |
GAAAAGGTAACTGCAGAAAA+TGG | + | chr6_3:80837449-80837468 | Msa0960770:intron | 35.0% | |
AAAGGTAACTGCAGAAAATG+GGG | + | chr6_3:80837451-80837470 | Msa0960770:CDS | 35.0% | |
AGAAAATGCTCTACATCCTT+CGG | - | chr6_3:80837551-80837570 | None:intergenic | 35.0% | |
! | CAGTATCTACAATCCAGTTT+TGG | + | chr6_3:80837616-80837635 | Msa0960770:CDS | 35.0% |
! | GTATCTACAATCCAGTTTTG+GGG | + | chr6_3:80837618-80837637 | Msa0960770:CDS | 35.0% |
!!! | TTTTGGGACCAAAGAATACT+AGG | - | chr6_3:80837722-80837741 | None:intergenic | 35.0% |
!! | ATGTCTAAGTTTGTTACTGG+GGG | + | chr6_3:80837741-80837760 | Msa0960770:intron | 35.0% |
! | TTGTTACACGATACGCTTTT+TGG | + | chr6_3:80837882-80837901 | Msa0960770:intron | 35.0% |
AAGAAGATTGCAAGAGATGT+GGG | + | chr6_3:80838334-80838353 | Msa0960770:CDS | 35.0% | |
! | GATGTGAATGAACCTTGTTT+AGG | + | chr6_3:80838363-80838382 | Msa0960770:CDS | 35.0% |
TGTAAGCTTAAAACAGCTTG+TGG | - | chr6_3:80838682-80838701 | None:intergenic | 35.0% | |
TTACACTGTTTAGGTGACTT+TGG | - | chr6_3:80838835-80838854 | None:intergenic | 35.0% | |
CTTTCTCTTCTATGCAATGT+GGG | - | chr6_3:80839133-80839152 | None:intergenic | 35.0% | |
GACCTTATTGGATATGTAAC+AGG | + | chr6_3:80839159-80839178 | Msa0960770:CDS | 35.0% | |
GAAGGCTAGGTTAGAATCTT+TGG | + | chr6_3:80836280-80836299 | Msa0960770:intron | 40.0% | |
TATGTTTGGTTGGAGTTGGA+GGG | + | chr6_3:80836655-80836674 | Msa0960770:intron | 40.0% | |
CTAAACTCGTAAGTCCTGTT+TGG | - | chr6_3:80837160-80837179 | None:intergenic | 40.0% | |
GGCATACTAAGAAACAGGTT+TGG | - | chr6_3:80837220-80837239 | None:intergenic | 40.0% | |
AGTGTGGCATACTAAGAAAC+AGG | - | chr6_3:80837225-80837244 | None:intergenic | 40.0% | |
!! | GCCACACTATTTTTCCACAT+TGG | + | chr6_3:80837237-80837256 | Msa0960770:intron | 40.0% |
GAAAATGCTCTACATCCTTC+GGG | - | chr6_3:80837550-80837569 | None:intergenic | 40.0% | |
TTTCAGAAGAGATTTCTGCG+CGG | + | chr6_3:80837570-80837589 | Msa0960770:CDS | 40.0% | |
AGAATATGGACCTGCAAAAG+TGG | - | chr6_3:80837652-80837671 | None:intergenic | 40.0% | |
GGTAAGAGAGCAAGAGAATA+TGG | - | chr6_3:80837666-80837685 | None:intergenic | 40.0% | |
TGTCAAATAGAGGCTATAGC+AGG | + | chr6_3:80837915-80837934 | Msa0960770:intron | 40.0% | |
GTCAAATAGAGGCTATAGCA+GGG | + | chr6_3:80837916-80837935 | Msa0960770:intron | 40.0% | |
TGCGTGTGTATGTATGTATG+TGG | + | chr6_3:80838251-80838270 | Msa0960770:intron | 40.0% | |
TGCAGGCAAAAGAAATTGTG+CGG | + | chr6_3:80838309-80838328 | Msa0960770:intron | 40.0% | |
GAAGAAGATTGCAAGAGATG+TGG | + | chr6_3:80838333-80838352 | Msa0960770:CDS | 40.0% | |
TCTCTGATCTAACAGATTCG+CGG | + | chr6_3:80838430-80838449 | Msa0960770:intron | 40.0% | |
TCTTTCTGATGCAGAAATGG+AGG | + | chr6_3:80839079-80839098 | Msa0960770:intron | 40.0% | |
CCTTTCTCTTCTATGCAATG+TGG | - | chr6_3:80839134-80839153 | None:intergenic | 40.0% | |
CCACATTGCATAGAAGAGAA+AGG | + | chr6_3:80839131-80839150 | Msa0960770:CDS | 40.0% | |
TATGCAGCTCAATATGCATG+AGG | + | chr6_3:80839323-80839342 | Msa0960770:intron | 40.0% | |
! | CATCCTTGATTCGCTGAGAT+CGG | - | chr6_3:80836406-80836425 | None:intergenic | 45.0% |
AGGGTATGTTTGGTTGGAGT+TGG | + | chr6_3:80836651-80836670 | Msa0960770:intron | 45.0% | |
GTATGTTTGGTTGGAGTTGG+AGG | + | chr6_3:80836654-80836673 | Msa0960770:intron | 45.0% | |
TTGGAGTTGGAGGGTTTAGT+TGG | + | chr6_3:80836664-80836683 | Msa0960770:intron | 45.0% | |
TGGAGTTGGAGGGTTTAGTT+GGG | + | chr6_3:80836665-80836684 | Msa0960770:intron | 45.0% | |
GATGAAGCACAAACACTCCT+CGG | - | chr6_3:80836900-80836919 | None:intergenic | 45.0% | |
!! | GTAATCGCAAGTATCGGTGT+CGG | - | chr6_3:80836998-80837017 | None:intergenic | 45.0% |
!!! | GTTTGGGTTGAGGTTTTGGA+GGG | - | chr6_3:80837143-80837162 | None:intergenic | 45.0% |
!!! | TGTTTGGGTTGAGGTTTTGG+AGG | - | chr6_3:80837144-80837163 | None:intergenic | 45.0% |
TCCAAAACCTCAACCCAAAC+AGG | + | chr6_3:80837143-80837162 | Msa0960770:intron | 45.0% | |
!!! | TCCTGTTTGGGTTGAGGTTT+TGG | - | chr6_3:80837147-80837166 | None:intergenic | 45.0% |
TGCAGAAAATGGGGAAGAAG+AGG | + | chr6_3:80837460-80837479 | Msa0960770:CDS | 45.0% | |
! | TTCGGGTTCAGTTCAATGAG+AGG | - | chr6_3:80837533-80837552 | None:intergenic | 45.0% |
TCTCATTGAACTGAACCCGA+AGG | + | chr6_3:80837532-80837551 | Msa0960770:CDS | 45.0% | |
!! | AGTTTGTTACTGGGGGTAGA+AGG | + | chr6_3:80837748-80837767 | Msa0960770:intron | 45.0% |
GCAGGCAAAAGAAATTGTGC+GGG | + | chr6_3:80838310-80838329 | Msa0960770:intron | 45.0% | |
CAGGCAAAAGAAATTGTGCG+GGG | + | chr6_3:80838311-80838330 | Msa0960770:intron | 45.0% | |
ATTCGCGGCATATTCGTAAC+AGG | + | chr6_3:80838445-80838464 | Msa0960770:intron | 45.0% | |
! | TTTTTGTCGAGCCTGTCTCA+AGG | + | chr6_3:80838507-80838526 | Msa0960770:intron | 45.0% |
ACCATAACGAACCTTGAGAC+AGG | - | chr6_3:80838521-80838540 | None:intergenic | 45.0% | |
CTCAAGGTTCGTTATGGTGA+AGG | + | chr6_3:80838523-80838542 | Msa0960770:intron | 45.0% | |
AGACTGTTTGGGAGAGCTTA+TGG | + | chr6_3:80838630-80838649 | Msa0960770:intron | 45.0% | |
TAGGTGACTTTGGCCCAATT+TGG | - | chr6_3:80838825-80838844 | None:intergenic | 45.0% | |
TTCTGATGCAGAAATGGAGG+AGG | + | chr6_3:80839082-80839101 | Msa0960770:intron | 45.0% | |
AAACGAAAGATGTCGCCAAC+TGG | + | chr6_3:80839346-80839365 | Msa0960770:CDS | 45.0% | |
AACGAAAGATGTCGCCAACT+GGG | + | chr6_3:80839347-80839366 | Msa0960770:CDS | 45.0% | |
GTGTGTATTGCAATCCCAGT+TGG | - | chr6_3:80839364-80839383 | None:intergenic | 45.0% | |
ACTGGGATTGCAATACACAC+AGG | + | chr6_3:80839364-80839383 | Msa0960770:CDS | 45.0% | |
CGCTCGCATGTCAGAAAACA+AGG | + | chr6_3:80836165-80836184 | Msa0960770:CDS | 50.0% | |
CGAATCAAGGATGTTTCCGC+CGG | + | chr6_3:80836413-80836432 | Msa0960770:CDS | 50.0% | |
AAACGGTAAGATCGTCGCTG+AGG | - | chr6_3:80836473-80836492 | None:intergenic | 50.0% | |
TACGCCGTTACGCCAAAACA+AGG | + | chr6_3:80836509-80836528 | Msa0960770:CDS | 50.0% | |
GGAGTTGGAGGGTTTAGTTG+GGG | + | chr6_3:80836666-80836685 | Msa0960770:intron | 50.0% | |
TTGGAGGGTTTAGTTGGGGA+AGG | + | chr6_3:80836670-80836689 | Msa0960770:intron | 50.0% | |
TGGAGGGTTTAGTTGGGGAA+GGG | + | chr6_3:80836671-80836690 | Msa0960770:intron | 50.0% | |
CATCGACGTGTGTCTATCAC+CGG | + | chr6_3:80836867-80836886 | Msa0960770:intron | 50.0% | |
ATCGACGTGTGTCTATCACC+GGG | + | chr6_3:80836868-80836887 | Msa0960770:intron | 50.0% | |
AACACTCCTCGGATTACTCC+CGG | - | chr6_3:80836889-80836908 | None:intergenic | 50.0% | |
ACACGACACATGTCGGACAT+CGG | - | chr6_3:80836975-80836994 | None:intergenic | 50.0% | |
!! | CGTAAGTCCTGTTTGGGTTG+AGG | - | chr6_3:80837153-80837172 | None:intergenic | 50.0% |
! | TCAATGAGAGGTGCATTCGC+AGG | - | chr6_3:80837521-80837540 | None:intergenic | 50.0% |
TGGCAGCATATCCCCAAAAC+TGG | - | chr6_3:80837632-80837651 | None:intergenic | 50.0% | |
!!! | GGATATGCTGCCACTTTTGC+AGG | + | chr6_3:80837639-80837658 | Msa0960770:CDS | 50.0% |
! | TCAGCGTGTCACTCAAGCAA+TGG | + | chr6_3:80838481-80838500 | Msa0960770:intron | 50.0% |
GCCTGTCTCAAGGTTCGTTA+TGG | + | chr6_3:80838517-80838536 | Msa0960770:intron | 50.0% | |
AGGTGCGAGAGAACAAGGAA+TGG | + | chr6_3:80839102-80839121 | Msa0960770:CDS | 50.0% | |
AGGAAGGTCTTCGAGCGTCA+CGG | - | chr6_3:80836453-80836472 | None:intergenic | 55.0% | |
GGTAAGATCGTCGCTGAGGA+AGG | - | chr6_3:80836469-80836488 | None:intergenic | 55.0% | |
AGGGTTTAGTTGGGGAAGGG+AGG | + | chr6_3:80836674-80836693 | Msa0960770:intron | 55.0% | |
GGGTTTAGTTGGGGAAGGGA+GGG | + | chr6_3:80836675-80836694 | Msa0960770:intron | 55.0% | |
! | TGTGGGTGTCGTGTCGATGT+CGG | + | chr6_3:80836843-80836862 | Msa0960770:intron | 55.0% |
CTATCACCGGGAGTAATCCG+AGG | + | chr6_3:80836880-80836899 | Msa0960770:intron | 55.0% | |
CACGACACATGTCGGACATC+GGG | - | chr6_3:80836974-80836993 | None:intergenic | 55.0% | |
GTGTCGGACACGACACATGT+CGG | - | chr6_3:80836982-80837001 | None:intergenic | 55.0% | |
ATTCGCTGAGATCGGCGCAC+TGG | - | chr6_3:80836398-80836417 | None:intergenic | 60.0% | |
! | GCGCCGATCTCAGCGAATCA+AGG | + | chr6_3:80836400-80836419 | Msa0960770:CDS | 60.0% |
AAGGTCTTCGAGCGTCACGG+TGG | - | chr6_3:80836450-80836469 | None:intergenic | 60.0% | |
CGCTGCGATAGCAAGGGTAG+AGG | + | chr6_3:80837593-80837612 | Msa0960770:CDS | 60.0% | |
! | GGAGGAGGTGCGAGAGAACA+AGG | + | chr6_3:80839097-80839116 | Msa0960770:CDS | 60.0% |
CACGGTGGCAGTTGCGGTAC+CGG | - | chr6_3:80836435-80836454 | None:intergenic | 65.0% | |
GAGCGTCACGGTGGCAGTTG+CGG | - | chr6_3:80836441-80836460 | None:intergenic | 65.0% | |
! | GGTGGCAGTTGCGGTACCGG+CGG | - | chr6_3:80836432-80836451 | None:intergenic | 70.0% |
TGCGCGGCGCTGCGATAGCA+AGG | + | chr6_3:80837586-80837605 | Msa0960770:CDS | 70.0% | |
GCGCGGCGCTGCGATAGCAA+GGG | + | chr6_3:80837587-80837606 | Msa0960770:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 80836043 | 80839390 | 80836043 | ID=Msa0960770;Name=Msa0960770 |
chr6_3 | mRNA | 80836043 | 80839390 | 80836043 | ID=Msa0960770-mRNA-1;Parent=Msa0960770;Name=Msa0960770-mRNA-1;_AED=0.07;_eAED=0.07;_QI=66|0.8|0.83|1|1|1|6|0|251 |
chr6_3 | exon | 80836043 | 80836186 | 80836043 | ID=Msa0960770-mRNA-1:exon:14504;Parent=Msa0960770-mRNA-1 |
chr6_3 | exon | 80836284 | 80836530 | 80836284 | ID=Msa0960770-mRNA-1:exon:14505;Parent=Msa0960770-mRNA-1 |
chr6_3 | exon | 80837450 | 80837660 | 80837450 | ID=Msa0960770-mRNA-1:exon:14506;Parent=Msa0960770-mRNA-1 |
chr6_3 | exon | 80838314 | 80838384 | 80838314 | ID=Msa0960770-mRNA-1:exon:14507;Parent=Msa0960770-mRNA-1 |
chr6_3 | exon | 80839093 | 80839180 | 80839093 | ID=Msa0960770-mRNA-1:exon:14508;Parent=Msa0960770-mRNA-1 |
chr6_3 | exon | 80839330 | 80839390 | 80839330 | ID=Msa0960770-mRNA-1:exon:14509;Parent=Msa0960770-mRNA-1 |
chr6_3 | five_prime_UTR | 80836043 | 80836108 | 80836043 | ID=Msa0960770-mRNA-1:five_prime_utr;Parent=Msa0960770-mRNA-1 |
chr6_3 | CDS | 80836109 | 80836186 | 80836109 | ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1 |
chr6_3 | CDS | 80836284 | 80836530 | 80836284 | ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1 |
chr6_3 | CDS | 80837450 | 80837660 | 80837450 | ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1 |
chr6_3 | CDS | 80838314 | 80838384 | 80838314 | ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1 |
chr6_3 | CDS | 80839093 | 80839180 | 80839093 | ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1 |
chr6_3 | CDS | 80839330 | 80839390 | 80839330 | ID=Msa0960770-mRNA-1:cds;Parent=Msa0960770-mRNA-1 |
Gene Sequence |
Protein sequence |