AlfalfaGEDB | Msa0468620

M. sativa cultivar zhongmu-4 / Msa0468620

KEGG: K02321
GO: GO:0000082 GO:0000228 GO:0000278 GO:0000428 GO:0000723 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005658 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0019725 GO:0022402 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032991 GO:0032993 GO:0033260 GO:0034641 GO:0034645 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0051276 GO:0055029 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1902494 GO:1903047 GO:1990234
PFAM: PF04042.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468620	XP_003601821.1	97.727	616	14	0	1	616	1	616	0.0	1238

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468620	sp\|Q14181\|DPOA2_HUMAN	35.641	390	209	7	215	600	223	574	4.01e-68	235

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468620	G7JC29	97.727	616	14	0	1	616	1	616	0.0	1238

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001800	Msa0468620	0.804824	1.794554e-49	-8.615850e-47
Msa0005020	Msa0468620	0.833683	4.633376e-56	-8.615850e-47
Msa0015570	Msa0468620	0.832495	9.148517e-56	-8.615850e-47
Msa0016040	Msa0468620	0.871553	6.261030e-67	-8.615850e-47
Msa0016530	Msa0468620	0.866307	3.136921e-65	-8.615850e-47
Msa0018920	Msa0468620	0.838682	2.487212e-57	-8.615850e-47
Msa0019930	Msa0468620	0.836037	1.183288e-56	-8.615850e-47
Msa0020540	Msa0468620	0.871231	8.002251e-67	-8.615850e-47
Msa0027800	Msa0468620	0.856194	3.794062e-62	-8.615850e-47
Msa0030070	Msa0468620	0.857630	1.432219e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468620	MtrunA17_Chr3g0122911	97.727	616	14	0	1	616	1	616	0.0	1238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468620	AT1G67630.1	59.744	626	230	12	3	616	5	620	0.0	743

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Find 165 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGACAGATAGGTTCG+CGG	0.616408	3_3:-70306103	Msa0468620:CDS
AAAATATTTCCATACAAAGA+TGG	0.522271	3_3:+70306165	None:intergenic
AAAGAAGCAAGCTATTGATA+AGG	0.484721	3_3:-70304308	Msa0468620:CDS
AAAGATGGTGTATCATGTAT+AGG	0.449011	3_3:+70306180	None:intergenic
AAATGCATTGCCGTAAATCC+GGG	0.513156	3_3:-70302082	Msa0468620:CDS
AAATTGTCTGTTGTAGTAAA+AGG	0.318473	3_3:+70303900	None:intergenic
AACAGTATTGAGCATTCTGG+AGG	0.602568	3_3:-70304586	Msa0468620:intron
AAGGGAACACTTTCCGCCGG+TGG	0.577945	3_3:+70302546	None:intergenic
AAGGGTGTAACCAGATCAGC+CGG	0.571145	3_3:+70306129	None:intergenic
AAGTCTACTCAAGCGATCAA+TGG	0.478977	3_3:+70302703	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACAAAATGCTGAAATGGAA+GGG	-	chr3_3:70302332-70302351	Msa0468620:intron	30.0%
GATATTATTAAGGAGGAAAC+TGG	-	chr3_3:70302388-70302407	Msa0468620:intron	30.0%
TTCTTGAACTTGTATCTGTT+GGG	-	chr3_3:70302724-70302743	Msa0468620:CDS	30.0%
AAAAACAACCTCAGAGAATA+TGG	-	chr3_3:70302783-70302802	Msa0468620:CDS	30.0%
AACCTATGTTTCATACCAAA+GGG	+	chr3_3:70302836-70302855	None:intergenic	30.0%
ATAGGTTGTTGATGCATATT+AGG	-	chr3_3:70302849-70302868	Msa0468620:intron	30.0%
AAAGATGGTGTATCATGTAT+AGG	+	chr3_3:70303076-70303095	None:intergenic	30.0%
AGATTGATGCTATAGAAAAC+CGG	-	chr3_3:70303436-70303455	Msa0468620:CDS	30.0%
ATTGAATGTTCTTTGCCTAA+GGG	-	chr3_3:70303682-70303701	Msa0468620:CDS	30.0%
TATTAGTCAAATTTCCCCTT+AGG	+	chr3_3:70303700-70303719	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	70301794	70307481	70301794	ID=Msa0468620;Name=Msa0468620
chr3_3	mRNA	70301794	70307481	70301794	ID=Msa0468620-mRNA-1;Parent=Msa0468620;Name=Msa0468620-mRNA-1;_AED=0.05;_eAED=0.05;_QI=80\|1\|1\|1\|1\|1\|16\|194\|616
chr3_3	exon	70301794	70302140	70301794	ID=Msa0468620-mRNA-1:exon:16993;Parent=Msa0468620-mRNA-1
chr3_3	exon	70302458	70302584	70302458	ID=Msa0468620-mRNA-1:exon:16992;Parent=Msa0468620-mRNA-1
chr3_3	exon	70302677	70302807	70302677	ID=Msa0468620-mRNA-1:exon:16991;Parent=Msa0468620-mRNA-1
chr3_3	exon	70303152	70303193	70303152	ID=Msa0468620-mRNA-1:exon:16990;Parent=Msa0468620-mRNA-1
chr3_3	exon	70303302	70303334	70303302	ID=Msa0468620-mRNA-1:exon:16989;Parent=Msa0468620-mRNA-1
chr3_3	exon	70303424	70303516	70303424	ID=Msa0468620-mRNA-1:exon:16988;Parent=Msa0468620-mRNA-1
chr3_3	exon	70303606	70303701	70303606	ID=Msa0468620-mRNA-1:exon:16987;Parent=Msa0468620-mRNA-1
chr3_3	exon	70303833	70303937	70303833	ID=Msa0468620-mRNA-1:exon:16986;Parent=Msa0468620-mRNA-1
chr3_3	exon	70304261	70304434	70304261	ID=Msa0468620-mRNA-1:exon:16985;Parent=Msa0468620-mRNA-1
chr3_3	exon	70304528	70304603	70304528	ID=Msa0468620-mRNA-1:exon:16984;Parent=Msa0468620-mRNA-1
chr3_3	exon	70305452	70305531	70305452	ID=Msa0468620-mRNA-1:exon:16983;Parent=Msa0468620-mRNA-1
chr3_3	exon	70305742	70305837	70305742	ID=Msa0468620-mRNA-1:exon:16982;Parent=Msa0468620-mRNA-1
chr3_3	exon	70305915	70306275	70305915	ID=Msa0468620-mRNA-1:exon:16981;Parent=Msa0468620-mRNA-1
chr3_3	exon	70306832	70306963	70306832	ID=Msa0468620-mRNA-1:exon:16980;Parent=Msa0468620-mRNA-1
chr3_3	exon	70307158	70307233	70307158	ID=Msa0468620-mRNA-1:exon:16979;Parent=Msa0468620-mRNA-1
chr3_3	exon	70307326	70307481	70307326	ID=Msa0468620-mRNA-1:exon:16978;Parent=Msa0468620-mRNA-1
chr3_3	five_prime_UTR	70307402	70307481	70307402	ID=Msa0468620-mRNA-1:five_prime_utr;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70307326	70307401	70307326	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70307158	70307233	70307158	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70306832	70306963	70306832	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70305915	70306275	70305915	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70305742	70305837	70305742	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70305452	70305531	70305452	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70304528	70304603	70304528	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70304261	70304434	70304261	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70303833	70303937	70303833	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70303606	70303701	70303606	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70303424	70303516	70303424	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70303302	70303334	70303302	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70303152	70303193	70303152	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70302677	70302807	70302677	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70302458	70302584	70302458	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	CDS	70301988	70302140	70301988	ID=Msa0468620-mRNA-1:cds;Parent=Msa0468620-mRNA-1
chr3_3	three_prime_UTR	70301794	70301987	70301794	ID=Msa0468620-mRNA-1:three_prime_utr;Parent=Msa0468620-mRNA-1

Gene Sequence

>Msa0468620

ATGAAAGAAGAAATCAAATCAGAATTCAAGAAAGCCAGGTTCGATTTCGAAGAAGAAGAAGAGATTCTTAGCAAATGTCTCACTTTTTGCGTCAACTACAGTCTCACCCCTTCCGATCTCGTCTCAAGCTGGGAAGCTTATTATCTTAACAGACAGCTGGATGAACCAATTGTACAAAATGCTGAAATGGAAGGGTTTCTGTTGCATCTGCAAAATAATGTGAAAGAAGATATTATTAAGGAGGAAACTGGTTTGCATCTTTATTCCATCGGAGATGTAGAAATGATCTTAAATGATGATGATACAAAGGACGATACTCCCAGCACACCAACGAATAATCGTCAAGATGTTTATTCGCCTATACATGATACACCATCTTTGTATGGAAATATTTTAGCATCTGGAAAGCCGGCTGATCTGGTTACACCCTTTTCAAAACGGACAGATAGGTTCGCGGTGAAGTTCAGCATCAATACCATACCTGACGTAGAAAATGGAAAACAAGAACTTAATCACGAGAATGAAGAGAATGACGAGTACAATATTGTTTCGAAAATTGTAAGCCGAAAAAGATGTTCATTGGTGATTCATGGATCAGGGCCGAAACCAGGTTGCAGATTCATGTATGATAGGACTGAGGATAAGATTGATGCTATAGAAAACCGGATTAAAAAACATGCAAGAGCACTTGTAGCCTCTGGGCTCTATGAAGAACCAACAGACCCTTCAATTGCCTCACCGAGAAGCTTTTTTTCCGTTGGCATGATTTGTTGTGACGGAGAAGGCCGTCTTAATGAGAAGTCTGTCATGTTGCAGAGCAGTATTGAGCATTCTGGAGGGGAATGTGTCCGCCTTGACTTGCAACGTTTAAGCCATTATTCAGTTTTCCCTGGTCAGGTAGTTGGAATTGGAGGGCATAATCCCAGTGGGCATTGCCTAGTTGCATCTAAATTGGTGGATTATATACCTACCTCTGTTGCCAAGGAGGATTTGAATCCTTCAAAGAAGCAAGCTATTGATAAGGAGAATCAGCCAACTGAACTGCTTTGTAATCAGAGAGAGTTATCAATGATTATTGCGGCTGGTCCTTTTACTACAACAGACAATTTGTTTTTTGAGCCTCTTGTAGAACTGCTGGCATATGCAAAGCGAAGACCACCACAGTTGCTTGTATTGCTTGGACCATTTATTGATTCTGAACACCCAGACATCAAGAAAGGAACTGTGGACAGGGATTTTGATGAAATATTTCGTTTGGAAGTCTTGAGGAAGTTGGAAGATTATGTAGAAAGTATGGGTTCAACAGTACGTGTTCTCCTTGTACCATCTATACGGGATGCTAACCATGATTTTGTTTTTCCTCAGCCTGCATTTGATATCAGTCAACCTCAGGTTCAGATAGCCAGTCTCACTAATCCTGGAATCTTCGAGGCAAATGAGGTCAAAGTTGGTTGCTGCACTTTGGATGTTCTCAAACAGATCAGTGGAGAGGAGATATCACGAATTTCAGCAGATAGAAAACCCATTGATCGCTTGAGTAGACTTGCAAACCATATTCTTAACCAACAAAGTTTCTATCCACTTTATCCACCGGCGGAAAGTGTTCCCTTGGACTTTTCTCTGGCGCCAGAAGCCCTTCAACTATCACTGGTTCCAGATGTTCTTATCTTACCTTCAGACCTCAAGTACTTTGTCAAGGTTCTTGATAATGAAGGCGAAGAGACCAACAGCATGAAATGCATTGCCGTAAATCCGGGAAGATTAGCCAAAGGGGAAGGCGGAGGCACTTTTGTAGAACTTGATTATAGTGGGGGTCCCGATAAAATTAACGCTTCAATTTTGGCCATTTGA

Protein sequence

>Msa0468620

MKEEIKSEFKKARFDFEEEEEILSKCLTFCVNYSLTPSDLVSSWEAYYLNRQLDEPIVQNAEMEGFLLHLQNNVKEDIIKEETGLHLYSIGDVEMILNDDDTKDDTPSTPTNNRQDVYSPIHDTPSLYGNILASGKPADLVTPFSKRTDRFAVKFSINTIPDVENGKQELNHENEENDEYNIVSKIVSRKRCSLVIHGSGPKPGCRFMYDRTEDKIDAIENRIKKHARALVASGLYEEPTDPSIASPRSFFSVGMICCDGEGRLNEKSVMLQSSIEHSGGECVRLDLQRLSHYSVFPGQVVGIGGHNPSGHCLVASKLVDYIPTSVAKEDLNPSKKQAIDKENQPTELLCNQRELSMIIAAGPFTTTDNLFFEPLVELLAYAKRRPPQLLVLLGPFIDSEHPDIKKGTVDRDFDEIFRLEVLRKLEDYVESMGSTVRVLLVPSIRDANHDFVFPQPAFDISQPQVQIASLTNPGIFEANEVKVGCCTLDVLKQISGEEISRISADRKPIDRLSRLANHILNQQSFYPLYPPAESVPLDFSLAPEALQLSLVPDVLILPSDLKYFVKVLDNEGEETNSMKCIAVNPGRLAKGEGGGTFVELDYSGGPDKINASILAI*