AlfalfaGEDB | Msa0923080

M. sativa cultivar zhongmu-4 / Msa0923080

KEGG: -
GO: -
PFAM: PF07765.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0923080	XP_013452832.2	98.919	370	4	0	11	380	1	370	0.0	755

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0923080	sp\|Q9SX73\|KIP1L_ARATH	33.459	266	147	3	51	316	7	242	1.99e-38	142

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0140280	Msa0923080	0.807896	4.041096e-50	-8.615850e-47
Msa0209980	Msa0923080	0.803240	3.830406e-49	-8.615850e-47
Msa0367520	Msa0923080	0.800609	1.329814e-48	-8.615850e-47
Msa0380670	Msa0923080	0.810339	1.210823e-50	-8.615850e-47
Msa0430300	Msa0923080	0.807442	5.044387e-50	-8.615850e-47
Msa0567170	Msa0923080	0.808400	3.156004e-50	-8.615850e-47
Msa0606100	Msa0923080	0.806868	6.673708e-50	-8.615850e-47
Msa0703600	Msa0923080	0.800348	1.503512e-48	-8.615850e-47
Msa0824450	Msa0923080	0.811358	7.285872e-51	-8.615850e-47
Msa0923080	Msa1215870	0.819728	9.973663e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0923080	MtrunA17_Chr6g0481301	98.919	370	4	0	11	380	1	370	0.0	755
Msa0923080	MtrunA17_Chr5g0394641	33.673	98	51	4	47	140	19	106	8.14e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0923080	AT1G48405.1	33.459	266	147	3	51	316	7	242	2.02e-39	142
Msa0923080	AT3G17680.1	42.678	239	123	5	55	287	12	242	1.16e-34	130
Msa0923080	AT3G17680.3	42.678	239	123	5	55	287	44	274	2.32e-34	130
Msa0923080	AT3G17680.2	42.128	235	122	5	59	287	60	286	2.36e-32	125
Msa0923080	AT1G03470.2	37.647	85	46	3	44	125	13	93	2.94e-11	63.9
Msa0923080	AT1G03470.3	37.647	85	46	3	44	125	13	93	2.94e-11	63.9
Msa0923080	AT1G03470.1	37.647	85	46	3	44	125	13	93	2.94e-11	63.9
Msa0923080	AT1G03470.4	37.647	85	46	3	44	125	13	93	2.94e-11	63.9

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Find 90 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGAAGAATGGTGGTGA+AGG	0.547748	6_2:+62891318	Msa0923080:CDS
AAAGTAGTTGAGGTCTCTTT+TGG	0.405251	6_2:-62890636	None:intergenic
AACATGGACTTGTTGCTATG+TGG	0.596720	6_2:+62891465	Msa0923080:CDS
AAGAAGAAGGAAATTCATCT+AGG	0.520316	6_2:+62891394	Msa0923080:CDS
AAGCCAGGAGGGCATGTTGT+TGG	0.572709	6_2:-62887240	None:intergenic
AAGGGAAGAATGGTGGTGAA+GGG	0.574928	6_2:+62891319	Msa0923080:CDS
AAGTGTTTGTATATATCGAT+CGG	0.552375	6_2:-62890698	None:intergenic
AATCGCAGCAAAAGCATGGT+TGG	0.537808	6_2:-62891676	None:intergenic
AATGCTGGTGAGAAGCCAGG+AGG	0.697605	6_2:-62887252	None:intergenic
ACAAATGTTGCCATTGATGA+AGG	0.414356	6_2:+62890852	Msa0923080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTGATCTATTTCCTAACA+TGG	-	chr6_2:62883519-62883538	None:intergenic	30.0%
ATTAGCCGAAAACAATGAAA+AGG	+	chr6_2:62883661-62883680	Msa0923080:intron	30.0%
TTATATCTTGGTCACACTTA+AGG	+	chr6_2:62883788-62883807	Msa0923080:intron	30.0%
TCAAATTCATCACACAACAA+AGG	+	chr6_2:62883909-62883928	Msa0923080:intron	30.0%
CAAATTCATCACACAACAAA+GGG	+	chr6_2:62883910-62883929	Msa0923080:intron	30.0%
TCAAATTCATCACACAACAA+AGG	+	chr6_2:62883909-62883928	Msa0923080:intron	30.0%
CAAATTCATCACACAACAAA+GGG	+	chr6_2:62883910-62883929	Msa0923080:intron	30.0%
TCAAATTCATCACACAACAA+AGG	+	chr6_2:62883909-62883928	Msa0923080:intron	30.0%
CAAATTCATCACACAACAAA+GGG	+	chr6_2:62883910-62883929	Msa0923080:intron	30.0%
CTTGGAAAATAAGTGAATGA+GGG	+	chr6_2:62884610-62884629	Msa0923080:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	62883354	62891985	62883354	ID=Msa0923080;Name=Msa0923080
chr6_2	mRNA	62883354	62891985	62883354	ID=Msa0923080-mRNA-1;Parent=Msa0923080;Name=Msa0923080-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.5\|0.33\|0.66\|0.5\|1\|3\|476\|380
chr6_2	exon	62883354	62883359	62883354	ID=Msa0923080-mRNA-1:exon:9784;Parent=Msa0923080-mRNA-1
chr6_2	exon	62887107	62887278	62887107	ID=Msa0923080-mRNA-1:exon:9785;Parent=Msa0923080-mRNA-1
chr6_2	exon	62890545	62891985	62890545	ID=Msa0923080-mRNA-1:exon:9786;Parent=Msa0923080-mRNA-1
chr6_2	CDS	62883354	62883359	62883354	ID=Msa0923080-mRNA-1:cds;Parent=Msa0923080-mRNA-1
chr6_2	CDS	62887107	62887278	62887107	ID=Msa0923080-mRNA-1:cds;Parent=Msa0923080-mRNA-1
chr6_2	CDS	62890545	62891509	62890545	ID=Msa0923080-mRNA-1:cds;Parent=Msa0923080-mRNA-1
chr6_2	three_prime_UTR	62891510	62891985	62891510	ID=Msa0923080-mRNA-1:three_prime_utr;Parent=Msa0923080-mRNA-1

Gene Sequence

>Msa0923080

ATGAAAAGGGCTTATAGGCAAAGGATATTGATGGAGAAGGGACCCAACATTATTGTGGATATGAACAAAGACAAAGTGATTTCAAATTCTCAATTGATTTCTTCATGCATAAAAGGGTTTAAAGACAAGAACATCACCACCAACAACATGCCCTCCTGGCTTCTCACCAGCATTTCTGATTTGGAAGAAAGGATGAAAATGTTGGCAATTGGAACAAGTGAAGAAGAAGAAGAAGGTGACACTTTTGCTGAAAGAGCAGAAACTTACTACCAAAAGAGACCTCAACTACTTTCACTTCTGCATGATTTGTACAATGGCTATGTCACTTTATCCGATCGATATATACAAACACTTGCAAAGCATAAGCATCATAGTAGACACTCTTCACAAGTTTCAACTTTGGAAGAAGGATTTTCTGATCAAGAAGAAGTTATTAGTGGTGTGAGTCAAGTTGATTCGGATATCGAAAGTTCAATCTCTTATCAACAAATGTTGCCATTGATGAAGGGTTCTATGGTTGATGTTGATGCAATTGTAGCTGAGCTTGTGATGAAGAATGTAATGTGTGATTTTTTGGTTCATGAGGTTGGAGTCATGGAGAGAAAGTATTGCGAGTCTTCGAGGAAAAGTGAGTTACAGAAGAGTTTGCTTGAGGTGTTGGAATCTGAGAGACTTGTATTGTTGAATGAGAATGCTGGTTTGAGTTATAGAGTTAATAGTTTGGTTGAAGAGAACAAAGAGCTTGCGTCCGAGTCAGTTTTCATCAAGAGAAAAGCCGGTGAGTTAGCTAAGTGTGTGCTGAAGATGAGGGAGGATCATAGAGTTTATCTATTGCATAGGAAAATTGAAGATCTTCAAGGGCAGATACATGGTTTGGAGAAGAGGAACAAGGAGTATTATGAGAGGCTTTTGAGAAGAGAGAGTCAAGAAAATGGCGGTTGTATCGGCAACAAAGGGAAGAATGGTGGTGAAGGGATAGCTTTGGAAGTTCATGTTCAAATGGAGAAGCCGAGAAGGTTTAAGTGGAAAGAAGAAGGAAATTCATCTAGGAAGAATTTTGCTGGGAAGAAAGGTCATAGTTTGTGGAAAAAGTTGAAGAACATGGACTTGTTGCTATGTGGGACAAATCCAACTTGCGCTTGA

Protein sequence

>Msa0923080

MKRAYRQRILMEKGPNIIVDMNKDKVISNSQLISSCIKGFKDKNITTNNMPSWLLTSISDLEERMKMLAIGTSEEEEEGDTFAERAETYYQKRPQLLSLLHDLYNGYVTLSDRYIQTLAKHKHHSRHSSQVSTLEEGFSDQEEVISGVSQVDSDIESSISYQQMLPLMKGSMVDVDAIVAELVMKNVMCDFLVHEVGVMERKYCESSRKSELQKSLLEVLESERLVLLNENAGLSYRVNSLVEENKELASESVFIKRKAGELAKCVLKMREDHRVYLLHRKIEDLQGQIHGLEKRNKEYYERLLRRESQENGGCIGNKGKNGGEGIALEVHVQMEKPRRFKWKEEGNSSRKNFAGKKGHSLWKKLKNMDLLLCGTNPTCA*