AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0923080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0923080 MtrunA17_Chr6g0481301 98.919 370 4 0 11 380 1 370 0.0 755
Msa0923080 MtrunA17_Chr5g0394641 33.673 98 51 4 47 140 19 106 8.14e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0923080 AT1G48405.1 33.459 266 147 3 51 316 7 242 2.02e-39 142
Msa0923080 AT3G17680.1 42.678 239 123 5 55 287 12 242 1.16e-34 130
Msa0923080 AT3G17680.3 42.678 239 123 5 55 287 44 274 2.32e-34 130
Msa0923080 AT3G17680.2 42.128 235 122 5 59 287 60 286 2.36e-32 125
Msa0923080 AT1G03470.2 37.647 85 46 3 44 125 13 93 2.94e-11 63.9
Msa0923080 AT1G03470.3 37.647 85 46 3 44 125 13 93 2.94e-11 63.9
Msa0923080 AT1G03470.1 37.647 85 46 3 44 125 13 93 2.94e-11 63.9
Msa0923080 AT1G03470.4 37.647 85 46 3 44 125 13 93 2.94e-11 63.9

Find 90 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCTTCTCACCAGCATTTC+TGG 0.111146 6_2:+62887257 Msa0923080:CDS
TTGATTTCTTCATGCATAAA+AGG 0.151774 6_2:+62887194 Msa0923080:CDS
GCTAGTAGTAGTAGATTTCT+AGG 0.275860 6_2:+62891606 Msa0923080:three_prime_UTR
GCCTTGTGTAGAGGGCTTAT+AGG 0.315998 6_2:+62887096 Msa0923080:intron
TCTTTCCACTTAAACCTTCT+CGG 0.324114 6_2:-62891375 None:intergenic
CAAAAGGACGTTCAACATTA+AGG 0.329958 6_2:-62891912 None:intergenic
GCCATTGATGAAGGGTTCTA+TGG 0.332474 6_2:+62890861 Msa0923080:CDS
AGAAGAGAGAGTCAAGAAAA+TGG 0.366420 6_2:+62891279 Msa0923080:CDS
GATTAGTTGATATCAGCTAT+TGG 0.376987 6_2:+62891785 Msa0923080:three_prime_UTR
TAGGTTACTAAGCATGTGTT+TGG 0.380988 6_2:+62891625 Msa0923080:three_prime_UTR
ATTAGTTGATATCAGCTATT+GGG 0.386796 6_2:+62891786 Msa0923080:three_prime_UTR
AAAGTAGTTGAGGTCTCTTT+TGG 0.405251 6_2:-62890636 None:intergenic
CAAGTTTCAACTTTGGAAGA+AGG 0.406416 6_2:+62890754 Msa0923080:CDS
TTCATATCCACAATAATGTT+GGG 0.408849 6_2:-62887143 None:intergenic
TCAAGGGCAGATACATGGTT+TGG 0.410594 6_2:+62891221 Msa0923080:CDS
CTTTATAATTTGAAACTGAA+TGG 0.413446 6_2:+62891944 Msa0923080:three_prime_UTR
ACAAATGTTGCCATTGATGA+AGG 0.414356 6_2:+62890852 Msa0923080:CDS
GAAGAGTTTGCTTGAGGTGT+TGG 0.416910 6_2:+62891005 Msa0923080:CDS
AGGATGAAAATGTTGGCAAT+TGG 0.428892 6_2:+62890556 Msa0923080:CDS
CTCTTCACAAGTTTCAACTT+TGG 0.429231 6_2:+62890747 Msa0923080:CDS
TGGTGGTAGATTTGGAAGAA+AGG 0.431166 6_2:+62890536 Msa0923080:intron
GTTCATATCCACAATAATGT+TGG 0.442137 6_2:-62887144 None:intergenic
GATCAAGAAGAAGTTATTAG+TGG 0.443016 6_2:+62890784 Msa0923080:CDS
GAGTTATAGAGTTAATAGTT+TGG 0.443249 6_2:+62891068 Msa0923080:CDS
CCACCAACAACATGCCCTCC+TGG 0.444437 6_2:+62887237 Msa0923080:CDS
TTTGCCTCTAGTATTATAGC+TGG 0.449053 6_2:+62891817 Msa0923080:three_prime_UTR
GAAAGTATTGCGAGTCTTCG+AGG 0.458677 6_2:+62890968 Msa0923080:CDS
TGGTGTGAGTCAAGTTGATT+CGG 0.464121 6_2:+62890804 Msa0923080:CDS
TGATTTCTTCATGCATAAAA+GGG 0.465405 6_2:+62887195 Msa0923080:CDS
GGAAGAAAGGATGAAAATGT+TGG 0.467904 6_2:+62890549 Msa0923080:CDS
TGGTGGTGAAGGGATAGCTT+TGG 0.472422 6_2:+62891329 Msa0923080:CDS
TTTGGAAGTTCATGTTCAAA+TGG 0.473753 6_2:+62891347 Msa0923080:CDS
CAAGAAAATGGCGGTTGTAT+CGG 0.480959 6_2:+62891291 Msa0923080:CDS
ACCATAGAACCCTTCATCAA+TGG 0.481891 6_2:-62890862 None:intergenic
TAAATACATACCAGAAATGC+TGG 0.485585 6_2:-62887267 None:intergenic
GGAAGAAAGGTCATAGTTTG+TGG 0.489302 6_2:+62891430 Msa0923080:CDS
GGTTCATGAGGTTGGAGTCA+TGG 0.496713 6_2:+62890942 Msa0923080:CDS
GCCTCTAGTATTATAGCTGG+TGG 0.499964 6_2:+62891820 Msa0923080:three_prime_UTR
TATAAAGAAGTTGAAACAAA+AGG 0.499966 6_2:-62891928 None:intergenic
AGGAAAATTGAAGATCTTCA+AGG 0.510509 6_2:+62891204 Msa0923080:CDS
AGGTTTAAGTGGAAAGAAGA+AGG 0.511084 6_2:+62891381 Msa0923080:CDS
TGCGCTTGATCTTGATCAGA+CGG 0.511806 6_2:+62891501 Msa0923080:exon
GATCTTCAAGGGCAGATACA+TGG 0.514525 6_2:+62891216 Msa0923080:CDS
CTTCTGCATGATTTGTACAA+TGG 0.516625 6_2:+62890661 Msa0923080:CDS
GGCGGTTGTATCGGCAACAA+AGG 0.518796 6_2:+62891300 Msa0923080:CDS
AAGAAGAAGGAAATTCATCT+AGG 0.520316 6_2:+62891394 Msa0923080:CDS
AGAAATGCTGGTGAGAAGCC+AGG 0.522647 6_2:-62887255 None:intergenic
AGATACATGGTTTGGAGAAG+AGG 0.525980 6_2:+62891229 Msa0923080:CDS
TCTACAATTAGTATATCAAA+AGG 0.529520 6_2:-62891764 None:intergenic
ACAAGTGAAGAAGAAGAAGA+AGG 0.536387 6_2:+62890580 Msa0923080:CDS
AATCGCAGCAAAAGCATGGT+TGG 0.537808 6_2:-62891676 None:intergenic
GCAAAGGATATTGATGGAGA+AGG 0.539636 6_2:+62887118 Msa0923080:CDS
TTATAGGCAAAGGATATTGA+TGG 0.546816 6_2:+62887112 Msa0923080:CDS
AAAGGGAAGAATGGTGGTGA+AGG 0.547748 6_2:+62891318 Msa0923080:CDS
GGAAAATTGAAGATCTTCAA+GGG 0.549055 6_2:+62891205 Msa0923080:CDS
AAGTGTTTGTATATATCGAT+CGG 0.552375 6_2:-62890698 None:intergenic
ATAGAGTTTATCTATTGCAT+AGG 0.555558 6_2:+62891184 Msa0923080:CDS
CAAAGGATATTGATGGAGAA+GGG 0.558379 6_2:+62887119 Msa0923080:CDS
TCTCTTGATGAAAACTGACT+CGG 0.560927 6_2:-62891115 None:intergenic
GATCAAGATCAAGCGCAAGT+TGG 0.564528 6_2:-62891495 None:intergenic
CCAGGAGGGCATGTTGTTGG+TGG 0.564949 6_2:-62887237 None:intergenic
CAAATGTTGCCATTGATGAA+GGG 0.570533 6_2:+62890853 Msa0923080:CDS
AAGCCAGGAGGGCATGTTGT+TGG 0.572709 6_2:-62887240 None:intergenic
AAGGGAAGAATGGTGGTGAA+GGG 0.574928 6_2:+62891319 Msa0923080:CDS
ATCGGCAACAAAGGGAAGAA+TGG 0.575270 6_2:+62891309 Msa0923080:CDS
TGCAGAAGTGAAAGTAGTTG+AGG 0.584459 6_2:-62890646 None:intergenic
AGAAGCCGAGAAGGTTTAAG+TGG 0.585872 6_2:+62891370 Msa0923080:CDS
GCGGTTGTATCGGCAACAAA+GGG 0.593239 6_2:+62891301 Msa0923080:CDS
TTCAAATGGAGAAGCCGAGA+AGG 0.593987 6_2:+62891361 Msa0923080:CDS
AACATGGACTTGTTGCTATG+TGG 0.596720 6_2:+62891465 Msa0923080:CDS
CTAAGTGTGTGCTGAAGATG+AGG 0.598254 6_2:+62891154 Msa0923080:CDS
GAAGGGACCCAACATTATTG+TGG 0.599311 6_2:+62887136 Msa0923080:CDS
TAGAAATCGCAGCAAAAGCA+TGG 0.604612 6_2:-62891680 None:intergenic
ACATGGACTTGTTGCTATGT+GGG 0.605405 6_2:+62891466 Msa0923080:CDS
TGTAGAGGGCTTATAGGCAA+AGG 0.606312 6_2:+62887102 Msa0923080:intron
GTTACAGAAGAGTTTGCTTG+AGG 0.610285 6_2:+62890999 Msa0923080:CDS
TTGATCAGACGGTTCAGATG+TGG 0.617813 6_2:+62891512 Msa0923080:three_prime_UTR
GTATTGTTGAATGAGAATGC+TGG 0.620386 6_2:+62891042 Msa0923080:CDS
ATGCTGGTGAGAAGCCAGGA+GGG 0.624757 6_2:-62887251 None:intergenic
CACACACTTAGCTAACTCAC+CGG 0.626155 6_2:-62891142 None:intergenic
ACCACGTGATTGTACGTAGT+CGG 0.637839 6_2:-62891535 None:intergenic
ACCACCAGCTATAATACTAG+AGG 0.659287 6_2:-62891821 None:intergenic
GGAACAAGGAGTATTATGAG+AGG 0.665037 6_2:+62891250 Msa0923080:CDS
GGCAACAAAGGGAAGAATGG+TGG 0.678048 6_2:+62891312 Msa0923080:CDS
AATGCTGGTGAGAAGCCAGG+AGG 0.697605 6_2:-62887252 None:intergenic
TGGTTTGGAGAAGAGGAACA+AGG 0.704148 6_2:+62891236 Msa0923080:CDS
GCCGACTACGTACAATCACG+TGG 0.714108 6_2:+62891534 Msa0923080:three_prime_UTR
AGAGAGAGTCAAGAAAATGG+CGG 0.718855 6_2:+62891282 Msa0923080:CDS
GTGTGTGCTGAAGATGAGGG+AGG 0.735654 6_2:+62891158 Msa0923080:CDS
TAAGTGTGTGCTGAAGATGA+GGG 0.745974 6_2:+62891155 Msa0923080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTGAAATTTAAATAAA+CGG - chr6_2:62885286-62885305 None:intergenic 10.0%
!!! TATACATTTTTTTGTTTTTT+GGG - chr6_2:62885329-62885348 None:intergenic 10.0%
!!! TTATACATTTTTTTGTTTTT+TGG - chr6_2:62885330-62885349 None:intergenic 10.0%
!! AATAGTATCAATAATATTAA+AGG + chr6_2:62888503-62888522 Msa0923080:intron 10.0%
!! ATAGTATCAATAATATTAAA+GGG + chr6_2:62888504-62888523 Msa0923080:intron 10.0%
!!! AAATTTTGAAAAACAAAAAT+TGG - chr6_2:62889669-62889688 None:intergenic 10.0%
!!! AAAAGTTGTATTTTTTATTA+TGG + chr6_2:62890355-62890374 Msa0923080:intron 10.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr6_2:62884815-62884834 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr6_2:62884816-62884835 None:intergenic 15.0%
!!! CATACATGTTTTTTTTTTTT+TGG + chr6_2:62884970-62884989 Msa0923080:intron 15.0%
!!! TAAGATTCTTGTTTTAAATT+TGG + chr6_2:62885052-62885071 Msa0923080:intron 15.0%
!! AATAATGAATATGATAGAAT+AGG - chr6_2:62885711-62885730 None:intergenic 15.0%
!! ATATTGTATTTGATCTTTAA+TGG + chr6_2:62886142-62886161 Msa0923080:intron 15.0%
!! TATTGTATTTGATCTTTAAT+GGG + chr6_2:62886143-62886162 Msa0923080:intron 15.0%
!!! TTTTCTTATTATTCTTGTAT+TGG + chr6_2:62886266-62886285 Msa0923080:intron 15.0%
!!! TTTTGAACATATTGATTATT+AGG - chr6_2:62886816-62886835 None:intergenic 15.0%
!!! AATTAAGATTGTGTTTTTTT+AGG - chr6_2:62886850-62886869 None:intergenic 15.0%
!!! AAATTATACATTTTGTTTCA+TGG - chr6_2:62886939-62886958 None:intergenic 15.0%
!! AAAAAAAAAAAATGGCAATA+AGG - chr6_2:62887588-62887607 None:intergenic 15.0%
!! TTTAAATGGTTAATAAACTT+TGG - chr6_2:62888244-62888263 None:intergenic 15.0%
!! GTAAGAAAAAAAAATCAATT+TGG - chr6_2:62888333-62888352 None:intergenic 15.0%
!! AATTTCTCATTTAATACTAT+AGG - chr6_2:62888443-62888462 None:intergenic 15.0%
!!! TATTTTTCTTTTTCCATTTA+AGG - chr6_2:62888479-62888498 None:intergenic 15.0%
!! TTAAATTCATATATCAATCT+AGG - chr6_2:62888830-62888849 None:intergenic 15.0%
!!! GGTTTAAAATACTAAATTAT+AGG - chr6_2:62889225-62889244 None:intergenic 15.0%
!!! AATAGTTATGTTTTTTTTCA+TGG + chr6_2:62890448-62890467 Msa0923080:intron 15.0%
!! AATCTAAAAAGAGAAAGAAA+AGG + chr6_2:62883413-62883432 Msa0923080:intron 20.0%
!!! GAGTTGTTTTTTTTTTACTA+TGG + chr6_2:62883729-62883748 Msa0923080:intron 20.0%
!! CAATTGTTTATTGAATCAAT+TGG + chr6_2:62884275-62884294 Msa0923080:intron 20.0%
!!! TTATTGAATCAATTGGTTTA+TGG + chr6_2:62884282-62884301 Msa0923080:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr6_2:62884746-62884765 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr6_2:62884856-62884875 None:intergenic 20.0%
!!! AAGAAAAGTGTATAAATGAA+GGG - chr6_2:62884880-62884899 None:intergenic 20.0%
!!! TAAGAAAAGTGTATAAATGA+AGG - chr6_2:62884881-62884900 None:intergenic 20.0%
!! ATTAATGAATGTATTCTTCT+TGG + chr6_2:62885790-62885809 Msa0923080:intron 20.0%
!!! AAACTGTTATTGTTTTATTC+TGG + chr6_2:62885968-62885987 Msa0923080:intron 20.0%
!!! AACTGTTATTGTTTTATTCT+GGG + chr6_2:62885969-62885988 Msa0923080:intron 20.0%
!! AAATTAGATTCAAAATGCAT+TGG + chr6_2:62886388-62886407 Msa0923080:intron 20.0%
!! AATTAGATTCAAAATGCATT+GGG + chr6_2:62886389-62886408 Msa0923080:intron 20.0%
!!! CATATTGATTATTAGGTTAA+AGG - chr6_2:62886809-62886828 None:intergenic 20.0%
!! TGAAGAAATTAAAATAGGTA+CGG - chr6_2:62887303-62887322 None:intergenic 20.0%
!! CATCATGAAGAAATTAAAAT+AGG - chr6_2:62887308-62887327 None:intergenic 20.0%
!! ACAAATTGAAAGACATAAAT+TGG + chr6_2:62887459-62887478 Msa0923080:intron 20.0%
!!! TAACTATGTTACAGATTTTA+AGG - chr6_2:62887486-62887505 None:intergenic 20.0%
!! ATGACAATAAAAACTAAAAG+TGG + chr6_2:62887842-62887861 Msa0923080:intron 20.0%
!! TTAGGTTAATAATTCTCATA+CGG + chr6_2:62887870-62887889 Msa0923080:intron 20.0%
!!! GTCATAATTGGAATTTTTTT+TGG + chr6_2:62887893-62887912 Msa0923080:intron 20.0%
!! AGAAAAAAAATCTATTCTTG+AGG + chr6_2:62887926-62887945 Msa0923080:intron 20.0%
!! ACTAGTTATCTGAATTTAAA+TGG - chr6_2:62888258-62888277 None:intergenic 20.0%
!! TAGAAAAATGTTGTATTGTA+AGG - chr6_2:62888601-62888620 None:intergenic 20.0%
!!! ATTTTTCTATCAATCATCAA+TGG + chr6_2:62888612-62888631 Msa0923080:intron 20.0%
!!! TTTTTCTATCAATCATCAAT+GGG + chr6_2:62888613-62888632 Msa0923080:intron 20.0%
!! ATATAATGTGGTTATAGTAT+AGG + chr6_2:62889011-62889030 Msa0923080:intron 20.0%
!! TATAATGTGGTTATAGTATA+GGG + chr6_2:62889012-62889031 Msa0923080:intron 20.0%
!! AGACAATATAATATTACTTG+TGG - chr6_2:62889049-62889068 None:intergenic 20.0%
!! AATCATATAAATCACATCAT+TGG - chr6_2:62889136-62889155 None:intergenic 20.0%
!! AATTAATCACAAATTAGACA+CGG - chr6_2:62889286-62889305 None:intergenic 20.0%
!! AAAATTGGTATGTAAAGTTA+TGG - chr6_2:62889654-62889673 None:intergenic 20.0%
!! TATAATAAAGTTCACTTCAT+TGG - chr6_2:62889696-62889715 None:intergenic 20.0%
!!! AGTGAACTTTATTATAGTTT+TGG + chr6_2:62889700-62889719 Msa0923080:intron 20.0%
!! CTTTACATTATCTGATTAAA+AGG - chr6_2:62889899-62889918 None:intergenic 20.0%
!! ATAATGTTGTAGAATAGTAT+AGG - chr6_2:62890023-62890042 None:intergenic 20.0%
!! ACAAAAACCATAAATAATTC+TGG - chr6_2:62890111-62890130 None:intergenic 20.0%
!!! TTATTATGGTTTTGTACATA+TGG + chr6_2:62890369-62890388 Msa0923080:intron 20.0%
!! AGAAAAAAAAATCTCTTACA+TGG - chr6_2:62890406-62890425 None:intergenic 20.0%
!! ATATGAACATGGTTTATTTA+TGG + chr6_2:62890516-62890535 Msa0923080:intron 20.0%
!!! AGATTTATATGTGTACTTTT+TGG + chr6_2:62891574-62891593 Msa0923080:three_prime_UTR 20.0%
!! TCTACAATTAGTATATCAAA+AGG - chr6_2:62891767-62891786 None:intergenic 20.0%
!! TATAAAGAAGTTGAAACAAA+AGG - chr6_2:62891931-62891950 None:intergenic 20.0%
!!! CTTTATAATTTGAAACTGAA+TGG + chr6_2:62891944-62891963 Msa0923080:three_prime_UTR 20.0%
!! GTGAGAAAAATAGATTTTCT+CGG + chr6_2:62883371-62883390 Msa0923080:intron 25.0%
!! TGAGAAAAATAGATTTTCTC+GGG + chr6_2:62883372-62883391 Msa0923080:intron 25.0%
! ATCAAAGTTCTTTGTATTGA+TGG + chr6_2:62883532-62883551 Msa0923080:intron 25.0%
! CAAAATAGTATCTCTAATAG+TGG + chr6_2:62883622-62883641 Msa0923080:intron 25.0%
!! TTGAACCTTTTCATTGTTTT+CGG - chr6_2:62883669-62883688 None:intergenic 25.0%
! AAAACAATGAAAAGGTTCAA+TGG + chr6_2:62883669-62883688 Msa0923080:intron 25.0%
! GAACTTCAATCTTTATATCT+TGG + chr6_2:62883776-62883795 Msa0923080:intron 25.0%
! AAAGTAGTATTTCAAACATG+TGG + chr6_2:62883937-62883956 Msa0923080:intron 25.0%
! AAGTAGTATTTCAAACATGT+GGG + chr6_2:62883938-62883957 Msa0923080:intron 25.0%
! AAAGTAGTATTTCAAACATG+TGG + chr6_2:62883937-62883956 Msa0923080:intron 25.0%
! AAGTAGTATTTCAAACATGT+GGG + chr6_2:62883938-62883957 Msa0923080:intron 25.0%
! AAAGTAGTATTTCAAACATG+TGG + chr6_2:62883937-62883956 Msa0923080:intron 25.0%
! AAGTAGTATTTCAAACATGT+GGG + chr6_2:62883938-62883957 Msa0923080:intron 25.0%
! AATGTCTATACAATACATCT+AGG - chr6_2:62884320-62884339 None:intergenic 25.0%
! TGTATTGTATAGACATTGTT+TGG + chr6_2:62884323-62884342 Msa0923080:intron 25.0%
! AAAAGTTACAAAGCAAAACA+AGG - chr6_2:62884458-62884477 None:intergenic 25.0%
!!! TTGTTTTGCTTTGTAACTTT+TGG + chr6_2:62884457-62884476 Msa0923080:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr6_2:62884747-62884766 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr6_2:62884768-62884787 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr6_2:62884769-62884788 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr6_2:62884857-62884876 None:intergenic 25.0%
!! AGAAAAGTGTATAAATGAAG+GGG - chr6_2:62884879-62884898 None:intergenic 25.0%
!!! TTTTTTGGTAGATACATACA+TGG + chr6_2:62884985-62885004 Msa0923080:intron 25.0%
!! GTTAACTTTGAAGATATCAT+AGG - chr6_2:62885032-62885051 None:intergenic 25.0%
!!! GTTTTTTGGGTGTATAATTA+TGG - chr6_2:62885316-62885335 None:intergenic 25.0%
! AAATGAAATCACCTAAAATC+CGG - chr6_2:62885446-62885465 None:intergenic 25.0%
!!! TTGTTTTGAATATAAGGGTA+GGG - chr6_2:62885551-62885570 None:intergenic 25.0%
!! AATGATAGTGAAATGAAACA+GGG - chr6_2:62885630-62885649 None:intergenic 25.0%
!! AAATGATAGTGAAATGAAAC+AGG - chr6_2:62885631-62885650 None:intergenic 25.0%
!!! ATTGATAGTGAAATGAAACA+GGG - chr6_2:62885662-62885681 None:intergenic 25.0%
! TGAATATGATAGAATAGGAA+GGG - chr6_2:62885706-62885725 None:intergenic 25.0%
! ATGAATATGATAGAATAGGA+AGG - chr6_2:62885707-62885726 None:intergenic 25.0%
! TCTATAGCATTTATTCTTCT+TGG + chr6_2:62885751-62885770 Msa0923080:intron 25.0%
! ATGATTGATTAAGATTGTTG+AGG + chr6_2:62886088-62886107 Msa0923080:intron 25.0%
!!! AGGAGAATGTAATGTTTTTT+TGG + chr6_2:62886108-62886127 Msa0923080:intron 25.0%
!!! TTCATCTTTTTTTGAAACAG+AGG - chr6_2:62886232-62886251 None:intergenic 25.0%
!! AAAGATGAATTTTTGCTTCA+TGG + chr6_2:62886243-62886262 Msa0923080:intron 25.0%
!!! ATTATTCTTGTATTGGTTTC+TGG + chr6_2:62886273-62886292 Msa0923080:intron 25.0%
!!! TTATTCTTGTATTGGTTTCT+GGG + chr6_2:62886274-62886293 Msa0923080:intron 25.0%
!! ACAACATCGACATATTTTAT+TGG + chr6_2:62886735-62886754 Msa0923080:intron 25.0%
! CCTTTGTATTTAAGAATAAG+TGG - chr6_2:62886995-62887014 None:intergenic 25.0%
! CCACTTATTCTTAAATACAA+AGG + chr6_2:62886992-62887011 Msa0923080:intron 25.0%
! ATACAAAGGACTATTATTTC+TGG + chr6_2:62887006-62887025 Msa0923080:intron 25.0%
! TCTGAATGGAAACTATAAAA+AGG - chr6_2:62887040-62887059 None:intergenic 25.0%
! TTCATATCCACAATAATGTT+GGG - chr6_2:62887146-62887165 None:intergenic 25.0%
! TTGATTTCTTCATGCATAAA+AGG + chr6_2:62887194-62887213 Msa0923080:CDS 25.0%
! TGATTTCTTCATGCATAAAA+GGG + chr6_2:62887195-62887214 Msa0923080:CDS 25.0%
!! GTTAAATTAGCCCTTTTATA+AGG + chr6_2:62887502-62887521 Msa0923080:intron 25.0%
!!! CAGATTTTGACCTTATAAAA+GGG - chr6_2:62887515-62887534 None:intergenic 25.0%
!!! ACAGATTTTGACCTTATAAA+AGG - chr6_2:62887516-62887535 None:intergenic 25.0%
! TGGGTTAATAATTCTCATAA+GGG - chr6_2:62887625-62887644 None:intergenic 25.0%
! TTGGGTTAATAATTCTCATA+AGG - chr6_2:62887626-62887645 None:intergenic 25.0%
! AAACTAAAAGTGGATCATTT+AGG + chr6_2:62887852-62887871 Msa0923080:intron 25.0%
! TAGGTTAATAATTCTCATAC+GGG + chr6_2:62887871-62887890 Msa0923080:intron 25.0%
!!! TGGAATTTTTTTTGGCAATA+AGG + chr6_2:62887901-62887920 Msa0923080:intron 25.0%
! GTTAAGTAAACAAACAGAAA+TGG - chr6_2:62888051-62888070 None:intergenic 25.0%
! TTTCAACCAATATTTGATCT+CGG + chr6_2:62888192-62888211 Msa0923080:intron 25.0%
! GTGAAGAAATCTGAATTAAA+TGG + chr6_2:62888539-62888558 Msa0923080:intron 25.0%
! TGAGTAAAAATGTAGTAACA+TGG - chr6_2:62888771-62888790 None:intergenic 25.0%
!!! CATGTAAGAATCTTTTTCAT+AGG + chr6_2:62889461-62889480 Msa0923080:intron 25.0%
! TGTACTACCAGAATTATTTA+TGG + chr6_2:62890101-62890120 Msa0923080:intron 25.0%
! TACTAACTCAAATATGAACA+TGG + chr6_2:62890505-62890524 Msa0923080:intron 25.0%
! TTTATTTATGGTGGTAGATT+TGG + chr6_2:62890528-62890547 Msa0923080:intron 25.0%
! AAGTGTTTGTATATATCGAT+CGG - chr6_2:62890701-62890720 None:intergenic 25.0%
!!! GAATGTAATGTGTGATTTTT+TGG + chr6_2:62890921-62890940 Msa0923080:CDS 25.0%
! GAGTTATAGAGTTAATAGTT+TGG + chr6_2:62891068-62891087 Msa0923080:CDS 25.0%
! ATAGAGTTTATCTATTGCAT+AGG + chr6_2:62891184-62891203 Msa0923080:CDS 25.0%
!! AAAATCAAGCTTTTAAGCTA+TGG + chr6_2:62891712-62891731 Msa0923080:three_prime_UTR 25.0%
!! ATTAGTTGATATCAGCTATT+GGG + chr6_2:62891786-62891805 Msa0923080:three_prime_UTR 25.0%
! TTTTCTCAAAGAAAATGCAG+CGG + chr6_2:62883454-62883473 Msa0923080:intron 30.0%
CTTTGATCTATTTCCTAACA+TGG - chr6_2:62883519-62883538 None:intergenic 30.0%
ATTAGCCGAAAACAATGAAA+AGG + chr6_2:62883661-62883680 Msa0923080:intron 30.0%
TTATATCTTGGTCACACTTA+AGG + chr6_2:62883788-62883807 Msa0923080:intron 30.0%
TCAAATTCATCACACAACAA+AGG + chr6_2:62883909-62883928 Msa0923080:intron 30.0%
CAAATTCATCACACAACAAA+GGG + chr6_2:62883910-62883929 Msa0923080:intron 30.0%
TCAAATTCATCACACAACAA+AGG + chr6_2:62883909-62883928 Msa0923080:intron 30.0%
CAAATTCATCACACAACAAA+GGG + chr6_2:62883910-62883929 Msa0923080:intron 30.0%
TCAAATTCATCACACAACAA+AGG + chr6_2:62883909-62883928 Msa0923080:intron 30.0%
CAAATTCATCACACAACAAA+GGG + chr6_2:62883910-62883929 Msa0923080:intron 30.0%
! TTGAATCAATTGGTTTATGG+CGG + chr6_2:62884285-62884304 Msa0923080:intron 30.0%
!!! AAAGCAGCATTTTTAGTCTT+AGG - chr6_2:62884523-62884542 None:intergenic 30.0%
CTTGGAAAATAAGTGAATGA+GGG + chr6_2:62884610-62884629 Msa0923080:intron 30.0%
TTGGAAAATAAGTGAATGAG+GGG + chr6_2:62884611-62884630 Msa0923080:intron 30.0%
AATGAAATCACCTAAAATCC+GGG - chr6_2:62885445-62885464 None:intergenic 30.0%
!!! GTTGTTTTGAATATAAGGGT+AGG - chr6_2:62885552-62885571 None:intergenic 30.0%
!!! GGACGTTGTTTTGAATATAA+GGG - chr6_2:62885556-62885575 None:intergenic 30.0%
! ATGATAGTGAAATGAAACAG+GGG - chr6_2:62885629-62885648 None:intergenic 30.0%
!! TTGATAGTGAAATGAAACAG+GGG - chr6_2:62885661-62885680 None:intergenic 30.0%
!! GATTGATAGTGAAATGAAAC+AGG - chr6_2:62885663-62885682 None:intergenic 30.0%
AATATGATAGAATAGGAAGG+GGG - chr6_2:62885704-62885723 None:intergenic 30.0%
GAATATGATAGAATAGGAAG+GGG - chr6_2:62885705-62885724 None:intergenic 30.0%
! ATGGTATTTGTTGAAAACAG+AGG + chr6_2:62886034-62886053 Msa0923080:intron 30.0%
ACAGAGGAATAATGAGATAA+AGG - chr6_2:62886216-62886235 None:intergenic 30.0%
GATACTAAGATCAAAGAGAA+TGG + chr6_2:62886343-62886362 Msa0923080:intron 30.0%
! AGAGAATGGAATTTTCTCAA+TGG + chr6_2:62886357-62886376 Msa0923080:intron 30.0%
ATTCAAAATGCATTGGGATT+AGG + chr6_2:62886395-62886414 Msa0923080:intron 30.0%
TTCAAAATGCATTGGGATTA+GGG + chr6_2:62886396-62886415 Msa0923080:intron 30.0%
!!! TGGGATTAGGGTTATTTTAA+TGG + chr6_2:62886408-62886427 Msa0923080:intron 30.0%
TATTGCTATGTGTTTCTTCA+TGG + chr6_2:62886518-62886537 Msa0923080:intron 30.0%
TTTCATGTTACAGTCTCAAA+GGG + chr6_2:62886606-62886625 Msa0923080:intron 30.0%
TGACACAATCAATACAATCA+TGG - chr6_2:62886657-62886676 None:intergenic 30.0%
!! CATTTTGTTTCATGGTAAGT+TGG - chr6_2:62886931-62886950 None:intergenic 30.0%
TTATAGGCAAAGGATATTGA+TGG + chr6_2:62887112-62887131 Msa0923080:CDS 30.0%
GTTCATATCCACAATAATGT+TGG - chr6_2:62887147-62887166 None:intergenic 30.0%
TAAATACATACCAGAAATGC+TGG - chr6_2:62887270-62887289 None:intergenic 30.0%
ATGATGAAATTGTTTGAGTG+TGG + chr6_2:62887322-62887341 Msa0923080:intron 30.0%
TTCATTACAGCCAAATGAAA+TGG + chr6_2:62887680-62887699 Msa0923080:intron 30.0%
TTTAAAAAAAACGGCTGCTT+AGG + chr6_2:62887764-62887783 Msa0923080:intron 30.0%
CTATTCTTGAGGTACAATAT+TGG + chr6_2:62887937-62887956 Msa0923080:intron 30.0%
GAACAAATTCACACATCAAT+TGG - chr6_2:62888146-62888165 None:intergenic 30.0%
! ATTGATGTGTGAATTTGTTC+TGG + chr6_2:62888146-62888165 Msa0923080:intron 30.0%
ATGAATCCGAGATCAAATAT+TGG - chr6_2:62888201-62888220 None:intergenic 30.0%
! ATGACATCAAATTGGTCTAA+AGG - chr6_2:62888381-62888400 None:intergenic 30.0%
CTATGTCAATGACATCAAAT+TGG - chr6_2:62888389-62888408 None:intergenic 30.0%
CAATTTGATGTCATTGACAT+AGG + chr6_2:62888387-62888406 Msa0923080:intron 30.0%
TTTCAAAAGCTTGCCTTAAA+TGG + chr6_2:62888463-62888482 Msa0923080:intron 30.0%
CATTTCAGTATCATACAGTA+TGG - chr6_2:62888672-62888691 None:intergenic 30.0%
ACATGGTATACAATGATGTA+CGG - chr6_2:62888754-62888773 None:intergenic 30.0%
! GACACATTGTTTTCTAATAC+TGG + chr6_2:62888937-62888956 Msa0923080:intron 30.0%
!! TTGAAGTGTTGCTAATAGAT+TGG + chr6_2:62888982-62889001 Msa0923080:intron 30.0%
! GATTGGTGGTTAATATAATG+TGG + chr6_2:62888999-62889018 Msa0923080:intron 30.0%
TCACAAAACAAACACATTGT+AGG - chr6_2:62889261-62889280 None:intergenic 30.0%
AACATGTGCTAAGAAAAAGT+TGG + chr6_2:62889433-62889452 Msa0923080:intron 30.0%
AATCTTGGTTGAAATCAGAT+TGG - chr6_2:62889547-62889566 None:intergenic 30.0%
TTATGGCAAAGGTTAAAGAA+AGG - chr6_2:62889637-62889656 None:intergenic 30.0%
GTACTTCAAATATGTTGATG+TGG - chr6_2:62889727-62889746 None:intergenic 30.0%
TGGGAAATGTGTAATTCTAA+CGG - chr6_2:62889789-62889808 None:intergenic 30.0%
ACAAGACATGAGGATAAAAT+GGG - chr6_2:62889808-62889827 None:intergenic 30.0%
GACATTTGCATTCAAAACTA+AGG + chr6_2:62889961-62889980 Msa0923080:intron 30.0%
GTTGTAGAATAGTATAGGTT+AGG - chr6_2:62890018-62890037 None:intergenic 30.0%
! CAAACAAAGGCACAATAAAA+GGG - chr6_2:62890141-62890160 None:intergenic 30.0%
ATATAGACCAGATCTCAATA+GGG - chr6_2:62890202-62890221 None:intergenic 30.0%
AATATAGACCAGATCTCAAT+AGG - chr6_2:62890203-62890222 None:intergenic 30.0%
! GGTCTATATTAACCTTCTTT+TGG + chr6_2:62890213-62890232 Msa0923080:intron 30.0%
!!! AAGTTGTGCTTTTTTCTTCA+TGG + chr6_2:62890261-62890280 Msa0923080:intron 30.0%
!!! TTTTCATGGTTTTGAAGCAA+TGG + chr6_2:62890462-62890481 Msa0923080:intron 30.0%
TGAACATGGTTTATTTATGG+TGG + chr6_2:62890519-62890538 Msa0923080:intron 30.0%
GATCAAGAAGAAGTTATTAG+TGG + chr6_2:62890784-62890803 Msa0923080:CDS 30.0%
AGGAAAATTGAAGATCTTCA+AGG + chr6_2:62891204-62891223 Msa0923080:CDS 30.0%
GGAAAATTGAAGATCTTCAA+GGG + chr6_2:62891205-62891224 Msa0923080:CDS 30.0%
TTTGGAAGTTCATGTTCAAA+TGG + chr6_2:62891347-62891366 Msa0923080:CDS 30.0%
AAGAAGAAGGAAATTCATCT+AGG + chr6_2:62891394-62891413 Msa0923080:CDS 30.0%
! GATTAGTTGATATCAGCTAT+TGG + chr6_2:62891785-62891804 Msa0923080:three_prime_UTR 30.0%
ATTTCCTAACATGGTATCAG+AGG - chr6_2:62883510-62883529 None:intergenic 35.0%
TGAGAAAGTTATCCCACTAA+TGG + chr6_2:62883573-62883592 Msa0923080:intron 35.0%
GAGAAAGTTATCCCACTAAT+GGG + chr6_2:62883574-62883593 Msa0923080:intron 35.0%
AGAAAGTTATCCCACTAATG+GGG + chr6_2:62883575-62883594 Msa0923080:intron 35.0%
CTTGTAATATCCCCATTAGT+GGG - chr6_2:62883588-62883607 None:intergenic 35.0%
ACTTGTAATATCCCCATTAG+TGG - chr6_2:62883589-62883608 None:intergenic 35.0%
AGGTTCAATGGACAACAAAA+TGG + chr6_2:62883681-62883700 Msa0923080:intron 35.0%
GGTTCAATGGACAACAAAAT+GGG + chr6_2:62883682-62883701 Msa0923080:intron 35.0%
AACATGTGGGAAAATGTTGT+TGG + chr6_2:62883951-62883970 Msa0923080:intron 35.0%
GAAAATGTTGTTGGAGGAAA+AGG + chr6_2:62883960-62883979 Msa0923080:intron 35.0%
AACATGTGGGAAAATGTTGT+TGG + chr6_2:62883951-62883970 Msa0923080:intron 35.0%
GAAAATGTTGTTGGAGGAAA+AGG + chr6_2:62883960-62883979 Msa0923080:intron 35.0%
AACATGTGGGAAAATGTTGT+TGG + chr6_2:62883951-62883970 Msa0923080:intron 35.0%
GAAAATGTTGTTGGAGGAAA+AGG + chr6_2:62883960-62883979 Msa0923080:intron 35.0%
CAGACACAAAGTTTGATGTT+AGG + chr6_2:62884389-62884408 Msa0923080:intron 35.0%
TGCTTCAATTTCACCTTTGT+TGG + chr6_2:62884412-62884431 Msa0923080:intron 35.0%
!! TTAGTGGTTTGTTGAGTATC+TGG + chr6_2:62884494-62884513 Msa0923080:intron 35.0%
!! AATGAAAGTGTTCTTGAGCT+TGG + chr6_2:62884592-62884611 Msa0923080:intron 35.0%
GCTTGGAAAATAAGTGAATG+AGG + chr6_2:62884609-62884628 Msa0923080:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr6_2:62884733-62884752 None:intergenic 35.0%
TGTATAAATGAAGGGGAAAG+TGG - chr6_2:62884872-62884891 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr6_2:62884902-62884921 Msa0923080:intron 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr6_2:62884915-62884934 Msa0923080:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG + chr6_2:62884916-62884935 Msa0923080:intron 35.0%
CTTTCGTTACGTCATGTTTA+AGG - chr6_2:62885078-62885097 None:intergenic 35.0%
CTTAAACATGACGTAACGAA+AGG + chr6_2:62885076-62885095 Msa0923080:intron 35.0%
!! GGGATAAGGATAGTTTTACA+CGG - chr6_2:62885425-62885444 None:intergenic 35.0%
GTGTAAAACTATCCTTATCC+CGG + chr6_2:62885424-62885443 Msa0923080:intron 35.0%
!!! GGGACGTTGTTTTGAATATA+AGG - chr6_2:62885557-62885576 None:intergenic 35.0%
GAGAAAATGAGAAGAAGAGA+GGG - chr6_2:62885577-62885596 None:intergenic 35.0%
TGAGAAAATGAGAAGAAGAG+AGG - chr6_2:62885578-62885597 None:intergenic 35.0%
! GTTTCTTCATGGAGTGATTT+TGG + chr6_2:62886529-62886548 Msa0923080:intron 35.0%
GTTTCATGTTACAGTCTCAA+AGG + chr6_2:62886605-62886624 Msa0923080:intron 35.0%
GTAGGTTAAAAGCAACTTGA+AGG - chr6_2:62886696-62886715 None:intergenic 35.0%
GCAAAATCTCAATCTCTGAA+TGG - chr6_2:62887054-62887073 None:intergenic 35.0%
! AATTTTGTTGCCTTGTGTAG+AGG + chr6_2:62887087-62887106 Msa0923080:intron 35.0%
! ATTTTGTTGCCTTGTGTAGA+GGG + chr6_2:62887088-62887107 Msa0923080:intron 35.0%
CAAAGGATATTGATGGAGAA+GGG + chr6_2:62887119-62887138 Msa0923080:CDS 35.0%
TCAAAATCTGTCCTAAACGA+TGG + chr6_2:62887525-62887544 Msa0923080:intron 35.0%
CAAAATCTGTCCTAAACGAT+GGG + chr6_2:62887526-62887545 Msa0923080:intron 35.0%
TCAAATCAAACCCATCGTTT+AGG - chr6_2:62887539-62887558 None:intergenic 35.0%
AACCTTACAGTAGGTCATTT+GGG - chr6_2:62887644-62887663 None:intergenic 35.0%
AAACCTTACAGTAGGTCATT+TGG - chr6_2:62887645-62887664 None:intergenic 35.0%
!!! TTTTTTTTAAACAGCTGCCC+AGG - chr6_2:62887755-62887774 None:intergenic 35.0%
GGGCAGCTGTTTAAAAAAAA+CGG + chr6_2:62887755-62887774 Msa0923080:intron 35.0%
GTTTCAGCCAAATGAAATGA+CGG - chr6_2:62887813-62887832 None:intergenic 35.0%
ATTCTCATACGGGTCATAAT+TGG + chr6_2:62887881-62887900 Msa0923080:intron 35.0%
! GTGAATTTGTTCTGGCAATT+CGG + chr6_2:62888154-62888173 Msa0923080:intron 35.0%
AAAGGAAAGTGACACCTATT+TGG - chr6_2:62888363-62888382 None:intergenic 35.0%
ATCAATCATCAATGGGAAGA+AGG + chr6_2:62888620-62888639 Msa0923080:intron 35.0%
TCAATCATCAATGGGAAGAA+GGG + chr6_2:62888621-62888640 Msa0923080:intron 35.0%
TTCAGTATCATACAGTATGG+AGG - chr6_2:62888669-62888688 None:intergenic 35.0%
CAATGTGTCTTCGATACATA+TGG - chr6_2:62888926-62888945 None:intergenic 35.0%
! AAGTGTTGCTAATAGATTGG+TGG + chr6_2:62888985-62889004 Msa0923080:intron 35.0%
ATTGTAGGACAACAAAGGTA+AGG - chr6_2:62889246-62889265 None:intergenic 35.0%
AACACATTGTAGGACAACAA+AGG - chr6_2:62889251-62889270 None:intergenic 35.0%
AACAGATTGACACCATCATA+GGG - chr6_2:62889508-62889527 None:intergenic 35.0%
AAACAGATTGACACCATCAT+AGG - chr6_2:62889509-62889528 None:intergenic 35.0%
GTTGAAATCAGATTGGAGAT+TGG - chr6_2:62889540-62889559 None:intergenic 35.0%
! TGACAATGGATTTGGAATCT+TGG - chr6_2:62889562-62889581 None:intergenic 35.0%
! CAGAACAATGACAATGGATT+TGG - chr6_2:62889570-62889589 None:intergenic 35.0%
CAAATCCATTGTCATTGTTC+TGG + chr6_2:62889568-62889587 Msa0923080:intron 35.0%
GGTATGTAAAGTTATGGCAA+AGG - chr6_2:62889648-62889667 None:intergenic 35.0%
CACAAGACATGAGGATAAAA+TGG - chr6_2:62889809-62889828 None:intergenic 35.0%
TATAAAGTGCACAAGACATG+AGG - chr6_2:62889818-62889837 None:intergenic 35.0%
! CCAAACAAAGGCACAATAAA+AGG - chr6_2:62890142-62890161 None:intergenic 35.0%
! CCTTTTATTGTGCCTTTGTT+TGG + chr6_2:62890139-62890158 Msa0923080:intron 35.0%
GCTATGAACTTGAGTAAATC+AGG + chr6_2:62890291-62890310 Msa0923080:intron 35.0%
GGAAGAAAGGATGAAAATGT+TGG + chr6_2:62890549-62890568 Msa0923080:CDS 35.0%
AGGATGAAAATGTTGGCAAT+TGG + chr6_2:62890556-62890575 Msa0923080:CDS 35.0%
ACAAGTGAAGAAGAAGAAGA+AGG + chr6_2:62890580-62890599 Msa0923080:CDS 35.0%
! AAAGTAGTTGAGGTCTCTTT+TGG - chr6_2:62890639-62890658 None:intergenic 35.0%
! CTTCTGCATGATTTGTACAA+TGG + chr6_2:62890661-62890680 Msa0923080:CDS 35.0%
CTCTTCACAAGTTTCAACTT+TGG + chr6_2:62890747-62890766 Msa0923080:CDS 35.0%
! CAAGTTTCAACTTTGGAAGA+AGG + chr6_2:62890754-62890773 Msa0923080:CDS 35.0%
ACAAATGTTGCCATTGATGA+AGG + chr6_2:62890852-62890871 Msa0923080:CDS 35.0%
CAAATGTTGCCATTGATGAA+GGG + chr6_2:62890853-62890872 Msa0923080:CDS 35.0%
!!! GTGTGATTTTTTGGTTCATG+AGG + chr6_2:62890930-62890949 Msa0923080:CDS 35.0%
!!! GATTTTTTGGTTCATGAGGT+TGG + chr6_2:62890934-62890953 Msa0923080:CDS 35.0%
GTATTGTTGAATGAGAATGC+TGG + chr6_2:62891042-62891061 Msa0923080:CDS 35.0%
TCTCTTGATGAAAACTGACT+CGG - chr6_2:62891118-62891137 None:intergenic 35.0%
! GTTTTCATCAAGAGAAAAGC+CGG + chr6_2:62891123-62891142 Msa0923080:CDS 35.0%
AGAAGAGAGAGTCAAGAAAA+TGG + chr6_2:62891279-62891298 Msa0923080:CDS 35.0%
TCTTTCCACTTAAACCTTCT+CGG - chr6_2:62891378-62891397 None:intergenic 35.0%
AGGTTTAAGTGGAAAGAAGA+AGG + chr6_2:62891381-62891400 Msa0923080:CDS 35.0%
! TCATCTAGGAAGAATTTTGC+TGG + chr6_2:62891408-62891427 Msa0923080:CDS 35.0%
! CATCTAGGAAGAATTTTGCT+GGG + chr6_2:62891409-62891428 Msa0923080:CDS 35.0%
! AAGAATTTTGCTGGGAAGAA+AGG + chr6_2:62891417-62891436 Msa0923080:CDS 35.0%
GTGGAAAAAGTTGAAGAACA+TGG + chr6_2:62891449-62891468 Msa0923080:CDS 35.0%
GCTAGTAGTAGTAGATTTCT+AGG + chr6_2:62891606-62891625 Msa0923080:three_prime_UTR 35.0%
TAGGTTACTAAGCATGTGTT+TGG + chr6_2:62891625-62891644 Msa0923080:three_prime_UTR 35.0%
TTTGCCTCTAGTATTATAGC+TGG + chr6_2:62891817-62891836 Msa0923080:three_prime_UTR 35.0%
CAAAAGGACGTTCAACATTA+AGG - chr6_2:62891915-62891934 None:intergenic 35.0%
GTTTCCTCTGATACCATGTT+AGG + chr6_2:62883503-62883522 Msa0923080:intron 40.0%
!! CAACAAAATGGGCTGCATAT+AGG + chr6_2:62883693-62883712 Msa0923080:intron 40.0%
ATGTGGGAAAATGTTGTTGG+AGG + chr6_2:62883954-62883973 Msa0923080:intron 40.0%
ATGTGGGAAAATGTTGTTGG+AGG + chr6_2:62883954-62883973 Msa0923080:intron 40.0%
ATGTGGGAAAATGTTGTTGG+AGG + chr6_2:62883954-62883973 Msa0923080:intron 40.0%
TCACCTTTGTTGGATGTGTT+CGG + chr6_2:62884422-62884441 Msa0923080:intron 40.0%
GGTGCATTGTCAATTGTTAG+TGG + chr6_2:62884478-62884497 Msa0923080:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr6_2:62884732-62884751 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG - chr6_2:62884918-62884937 None:intergenic 40.0%
! CTATCCTTATCCCGGATTTT+AGG + chr6_2:62885432-62885451 Msa0923080:intron 40.0%
ATCACCTAAAATCCGGGATA+AGG - chr6_2:62885439-62885458 None:intergenic 40.0%
CATACTCCTACTCCTTTACT+AGG + chr6_2:62885520-62885539 Msa0923080:intron 40.0%
GTGAAAACAGAGGAAGTTGA+TGG - chr6_2:62885604-62885623 None:intergenic 40.0%
ATAGTGAAATGAAACAGGGG+AGG - chr6_2:62885626-62885645 None:intergenic 40.0%
ATAGTGAAATGAAACAGGGG+AGG - chr6_2:62885626-62885645 None:intergenic 40.0%
!! TGGTTTCTGGGATTTCAGAT+AGG + chr6_2:62886286-62886305 Msa0923080:intron 40.0%
! TCTGGGATTTCAGATAGGTA+TGG + chr6_2:62886291-62886310 Msa0923080:intron 40.0%
TGTCGATGTTGTATCAGTGT+CGG - chr6_2:62886727-62886746 None:intergenic 40.0%
CGATGTGTTTATGTCGTGTA+CGG + chr6_2:62886761-62886780 Msa0923080:intron 40.0%
GCAAAGGATATTGATGGAGA+AGG + chr6_2:62887118-62887137 Msa0923080:CDS 40.0%
!! AGTGTGGACTAGAGAAATGT+GGG + chr6_2:62887338-62887357 Msa0923080:intron 40.0%
AACCCAAATGACCTACTGTA+AGG + chr6_2:62887639-62887658 Msa0923080:intron 40.0%
! GACCTACTGTAAGGTTTGTT+TGG + chr6_2:62887648-62887667 Msa0923080:intron 40.0%
GACCAAACAAACCTTACAGT+AGG - chr6_2:62887653-62887672 None:intergenic 40.0%
GCCAAATGAAATGGCTGTAA+TGG + chr6_2:62887689-62887708 Msa0923080:intron 40.0%
GCCATTACAGCCATTTCATT+TGG - chr6_2:62887693-62887712 None:intergenic 40.0%
! AATTTGTTCTGGCAATTCGG+AGG + chr6_2:62888157-62888176 Msa0923080:intron 40.0%
ACAAACGTCCAAGTCTTCTT+TGG + chr6_2:62888716-62888735 Msa0923080:intron 40.0%
!! TGCTGTTTCCAAAGAAGACT+TGG - chr6_2:62888727-62888746 None:intergenic 40.0%
GTGCTAAGAAAAAGTTGGCA+TGG + chr6_2:62889438-62889457 Msa0923080:intron 40.0%
TTTCATAGGCTGCTATTGAC+AGG + chr6_2:62889475-62889494 Msa0923080:intron 40.0%
ACAGATTGACACCATCATAG+GGG - chr6_2:62889507-62889526 None:intergenic 40.0%
ATGAGCCAGAACAATGACAA+TGG - chr6_2:62889576-62889595 None:intergenic 40.0%
AGTGACATGTCACCAAACAA+AGG - chr6_2:62890154-62890173 None:intergenic 40.0%
TCATCAACCCTATTGAGATC+TGG + chr6_2:62890192-62890211 Msa0923080:intron 40.0%
CCAATGAGAACACCAAAAGA+AGG - chr6_2:62890228-62890247 None:intergenic 40.0%
!!! CCTTCTTTTGGTGTTCTCAT+TGG + chr6_2:62890225-62890244 Msa0923080:intron 40.0%
TGGTGGTAGATTTGGAAGAA+AGG + chr6_2:62890536-62890555 Msa0923080:intron 40.0%
TGCAGAAGTGAAAGTAGTTG+AGG - chr6_2:62890649-62890668 None:intergenic 40.0%
!! TGGTGTGAGTCAAGTTGATT+CGG + chr6_2:62890804-62890823 Msa0923080:CDS 40.0%
ACCATAGAACCCTTCATCAA+TGG - chr6_2:62890865-62890884 None:intergenic 40.0%
! GTTACAGAAGAGTTTGCTTG+AGG + chr6_2:62890999-62891018 Msa0923080:CDS 40.0%
TAAGTGTGTGCTGAAGATGA+GGG + chr6_2:62891155-62891174 Msa0923080:CDS 40.0%
! AGATACATGGTTTGGAGAAG+AGG + chr6_2:62891229-62891248 Msa0923080:CDS 40.0%
!! GGAACAAGGAGTATTATGAG+AGG + chr6_2:62891250-62891269 Msa0923080:CDS 40.0%
AGAGAGAGTCAAGAAAATGG+CGG + chr6_2:62891282-62891301 Msa0923080:CDS 40.0%
CAAGAAAATGGCGGTTGTAT+CGG + chr6_2:62891291-62891310 Msa0923080:CDS 40.0%
GGAAGAAAGGTCATAGTTTG+TGG + chr6_2:62891430-62891449 Msa0923080:CDS 40.0%
!! AACATGGACTTGTTGCTATG+TGG + chr6_2:62891465-62891484 Msa0923080:CDS 40.0%
!! ACATGGACTTGTTGCTATGT+GGG + chr6_2:62891466-62891485 Msa0923080:CDS 40.0%
TAGAAATCGCAGCAAAAGCA+TGG - chr6_2:62891683-62891702 None:intergenic 40.0%
ACCACCAGCTATAATACTAG+AGG - chr6_2:62891824-62891843 None:intergenic 40.0%
GCAGCGGAAAATATCCTTCA+AGG + chr6_2:62883470-62883489 Msa0923080:intron 45.0%
GCGGAAAATATCCTTCAAGG+TGG + chr6_2:62883473-62883492 Msa0923080:intron 45.0%
TATCCTTCAAGGTGGATACC+AGG + chr6_2:62883481-62883500 Msa0923080:intron 45.0%
AAACCTGGTATCCACCTTGA+AGG - chr6_2:62883487-62883506 None:intergenic 45.0%
ACATGGTATCAGAGGAAACC+TGG - chr6_2:62883502-62883521 None:intergenic 45.0%
TGGGCTGCATATAGGATAAC+TGG + chr6_2:62883701-62883720 Msa0923080:intron 45.0%
TGAGACACTAAGACAACACG+AGG + chr6_2:62884546-62884565 Msa0923080:intron 45.0%
ACTAAGACAACACGAGGAAG+AGG + chr6_2:62884552-62884571 Msa0923080:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG + chr6_2:62884920-62884939 Msa0923080:intron 45.0%
! CGTTGCGTCATGTTTAAGAC+TGG - chr6_2:62885240-62885259 None:intergenic 45.0%
CTCCTACTCCTTTACTAGGT+AGG + chr6_2:62885524-62885543 Msa0923080:intron 45.0%
GTCCTACCTAGTAAAGGAGT+AGG - chr6_2:62885529-62885548 None:intergenic 45.0%
TGTGTTTATGTCGTGTACGG+TGG + chr6_2:62886764-62886783 Msa0923080:intron 45.0%
TGTAGAGGGCTTATAGGCAA+AGG + chr6_2:62887102-62887121 Msa0923080:intron 45.0%
GAAGGGACCCAACATTATTG+TGG + chr6_2:62887136-62887155 Msa0923080:CDS 45.0%
!! GAGTGTGGACTAGAGAAATG+TGG + chr6_2:62887337-62887356 Msa0923080:intron 45.0%
!! GTGTGGACTAGAGAAATGTG+GGG + chr6_2:62887339-62887358 Msa0923080:intron 45.0%
!!! TGTTCTGGGCAGCCATTTTT+TGG + chr6_2:62887726-62887745 Msa0923080:intron 45.0%
!!! CAGCCATTTTTTGGTGTCCT+GGG + chr6_2:62887735-62887754 Msa0923080:intron 45.0%
GCCATTGCCGTCATTTCATT+TGG + chr6_2:62887803-62887822 Msa0923080:intron 45.0%
GCCAAATGAAATGACGGCAA+TGG - chr6_2:62887807-62887826 None:intergenic 45.0%
ATCAATGGGAAGAAGGGATG+AGG + chr6_2:62888627-62888646 Msa0923080:intron 45.0%
ACAGGTATCTACCCCTATGA+TGG + chr6_2:62889493-62889512 Msa0923080:intron 45.0%
GCACTTAGCACATACATCTC+AGG + chr6_2:62889922-62889941 Msa0923080:intron 45.0%
GCCATTGATGAAGGGTTCTA+TGG + chr6_2:62890861-62890880 Msa0923080:CDS 45.0%
!! GAAAGTATTGCGAGTCTTCG+AGG + chr6_2:62890968-62890987 Msa0923080:CDS 45.0%
! GAAGAGTTTGCTTGAGGTGT+TGG + chr6_2:62891005-62891024 Msa0923080:CDS 45.0%
CACACACTTAGCTAACTCAC+CGG - chr6_2:62891145-62891164 None:intergenic 45.0%
CTAAGTGTGTGCTGAAGATG+AGG + chr6_2:62891154-62891173 Msa0923080:CDS 45.0%
GATCTTCAAGGGCAGATACA+TGG + chr6_2:62891216-62891235 Msa0923080:CDS 45.0%
TCAAGGGCAGATACATGGTT+TGG + chr6_2:62891221-62891240 Msa0923080:CDS 45.0%
! TGGTTTGGAGAAGAGGAACA+AGG + chr6_2:62891236-62891255 Msa0923080:CDS 45.0%
ATCGGCAACAAAGGGAAGAA+TGG + chr6_2:62891309-62891328 Msa0923080:CDS 45.0%
! AAAGGGAAGAATGGTGGTGA+AGG + chr6_2:62891318-62891337 Msa0923080:CDS 45.0%
! AAGGGAAGAATGGTGGTGAA+GGG + chr6_2:62891319-62891338 Msa0923080:CDS 45.0%
TTCAAATGGAGAAGCCGAGA+AGG + chr6_2:62891361-62891380 Msa0923080:CDS 45.0%
AGAAGCCGAGAAGGTTTAAG+TGG + chr6_2:62891370-62891389 Msa0923080:CDS 45.0%
GATCAAGATCAAGCGCAAGT+TGG - chr6_2:62891498-62891517 None:intergenic 45.0%
TGCGCTTGATCTTGATCAGA+CGG + chr6_2:62891501-62891520 Msa0923080:exon 45.0%
TTGATCAGACGGTTCAGATG+TGG + chr6_2:62891512-62891531 Msa0923080:three_prime_UTR 45.0%
ACCACGTGATTGTACGTAGT+CGG - chr6_2:62891538-62891557 None:intergenic 45.0%
! AATCGCAGCAAAAGCATGGT+TGG - chr6_2:62891679-62891698 None:intergenic 45.0%
GCCTCTAGTATTATAGCTGG+TGG + chr6_2:62891820-62891839 Msa0923080:three_prime_UTR 45.0%
!!! AAATTAAAACTAAATTTTTA+TGG + chr6_2:62886015-62886034 Msa0923080:intron 5.0%
!!! TTTTGTTTATTTATTTATTT+TGG + chr6_2:62886957-62886976 Msa0923080:intron 5.0%
!! ATGAAAAAAAAAAAAAAAAA+TGG - chr6_2:62887596-62887615 None:intergenic 5.0%
CGACCGAACACATCCAACAA+AGG - chr6_2:62884428-62884447 None:intergenic 50.0%
GGACGGAGGGAGTAAAGATA+TGG - chr6_2:62884711-62884730 None:intergenic 50.0%
TATCTTTACTCCCTCCGTCC+CGG + chr6_2:62884711-62884730 Msa0923080:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr6_2:62884728-62884747 None:intergenic 50.0%
GTCAATTATACCGGGACGGA+GGG + chr6_2:62884924-62884943 Msa0923080:intron 50.0%
TGATTATACTCCCTCCGTCC+CGG - chr6_2:62884937-62884956 None:intergenic 50.0%
GGTAGGGTCCTACCTAGTAA+AGG - chr6_2:62885535-62885554 None:intergenic 50.0%
AACAGGGGAGGTGAAAACAG+AGG - chr6_2:62885614-62885633 None:intergenic 50.0%
! TCAGTGTCGGACACGTTTGT+AGG - chr6_2:62886714-62886733 None:intergenic 50.0%
GCCTTGTGTAGAGGGCTTAT+AGG + chr6_2:62887096-62887115 Msa0923080:intron 50.0%
GCCTATAAGCCCTCTACACA+AGG - chr6_2:62887100-62887119 None:intergenic 50.0%
AGAAATGCTGGTGAGAAGCC+AGG - chr6_2:62887258-62887277 None:intergenic 50.0%
TGGCTTCTCACCAGCATTTC+TGG + chr6_2:62887257-62887276 Msa0923080:CDS 50.0%
CAGAACACGACACGTGTTCT+GGG + chr6_2:62887712-62887731 Msa0923080:intron 50.0%
!!! GCAGCCATTTTTTGGTGTCC+TGG + chr6_2:62887734-62887753 Msa0923080:intron 50.0%
CTGCCCAGGACACCAAAAAA+TGG - chr6_2:62887741-62887760 None:intergenic 50.0%
TGTTCTGGCAATTCGGAGGT+CGG + chr6_2:62888161-62888180 Msa0923080:intron 50.0%
ATGGGAAGAAGGGATGAGGA+AGG + chr6_2:62888631-62888650 Msa0923080:intron 50.0%
GAAGAAGGGATGAGGAAGGA+AGG + chr6_2:62888635-62888654 Msa0923080:intron 50.0%
! AAGAGAAGCGCGTGACAACA+TGG - chr6_2:62888799-62888818 None:intergenic 50.0%
GGTTCATGAGGTTGGAGTCA+TGG + chr6_2:62890942-62890961 Msa0923080:CDS 50.0%
! GCGGTTGTATCGGCAACAAA+GGG + chr6_2:62891301-62891320 Msa0923080:CDS 50.0%
GGCAACAAAGGGAAGAATGG+TGG + chr6_2:62891312-62891331 Msa0923080:CDS 50.0%
! TGGTGGTGAAGGGATAGCTT+TGG + chr6_2:62891329-62891348 Msa0923080:CDS 50.0%
GTCAGTTATTCCGGGACGGA+GGG - chr6_2:62884724-62884743 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG + chr6_2:62884923-62884942 Msa0923080:intron 55.0%
! AAGCCAGGAGGGCATGTTGT+TGG - chr6_2:62887243-62887262 None:intergenic 55.0%
ATGCTGGTGAGAAGCCAGGA+GGG - chr6_2:62887254-62887273 None:intergenic 55.0%
AATGCTGGTGAGAAGCCAGG+AGG - chr6_2:62887255-62887274 None:intergenic 55.0%
GCAGAACACGACACGTGTTC+TGG + chr6_2:62887711-62887730 Msa0923080:intron 55.0%
GTTCTGGCAATTCGGAGGTC+GGG + chr6_2:62888162-62888181 Msa0923080:intron 55.0%
GTGTGTGCTGAAGATGAGGG+AGG + chr6_2:62891158-62891177 Msa0923080:CDS 55.0%
! GGCGGTTGTATCGGCAACAA+AGG + chr6_2:62891300-62891319 Msa0923080:CDS 55.0%
GCCGACTACGTACAATCACG+TGG + chr6_2:62891534-62891553 Msa0923080:three_prime_UTR 55.0%
GGTCAGTTATTCCGGGACGG+AGG - chr6_2:62884725-62884744 None:intergenic 60.0%
! CCAGGAGGGCATGTTGTTGG+TGG - chr6_2:62887240-62887259 None:intergenic 60.0%
CCACCAACAACATGCCCTCC+TGG + chr6_2:62887237-62887256 Msa0923080:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 62883354 62891985 62883354 ID=Msa0923080;Name=Msa0923080
chr6_2 mRNA 62883354 62891985 62883354 ID=Msa0923080-mRNA-1;Parent=Msa0923080;Name=Msa0923080-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.33|0.66|0.5|1|3|476|380
chr6_2 exon 62883354 62883359 62883354 ID=Msa0923080-mRNA-1:exon:9784;Parent=Msa0923080-mRNA-1
chr6_2 exon 62887107 62887278 62887107 ID=Msa0923080-mRNA-1:exon:9785;Parent=Msa0923080-mRNA-1
chr6_2 exon 62890545 62891985 62890545 ID=Msa0923080-mRNA-1:exon:9786;Parent=Msa0923080-mRNA-1
chr6_2 CDS 62883354 62883359 62883354 ID=Msa0923080-mRNA-1:cds;Parent=Msa0923080-mRNA-1
chr6_2 CDS 62887107 62887278 62887107 ID=Msa0923080-mRNA-1:cds;Parent=Msa0923080-mRNA-1
chr6_2 CDS 62890545 62891509 62890545 ID=Msa0923080-mRNA-1:cds;Parent=Msa0923080-mRNA-1
chr6_2 three_prime_UTR 62891510 62891985 62891510 ID=Msa0923080-mRNA-1:three_prime_utr;Parent=Msa0923080-mRNA-1
Gene Sequence

>Msa0923080

ATGAAAAGGGCTTATAGGCAAAGGATATTGATGGAGAAGGGACCCAACATTATTGTGGATATGAACAAAGACAAAGTGATTTCAAATTCTCAATTGATTTCTTCATGCATAAAAGGGTTTAAAGACAAGAACATCACCACCAACAACATGCCCTCCTGGCTTCTCACCAGCATTTCTGATTTGGAAGAAAGGATGAAAATGTTGGCAATTGGAACAAGTGAAGAAGAAGAAGAAGGTGACACTTTTGCTGAAAGAGCAGAAACTTACTACCAAAAGAGACCTCAACTACTTTCACTTCTGCATGATTTGTACAATGGCTATGTCACTTTATCCGATCGATATATACAAACACTTGCAAAGCATAAGCATCATAGTAGACACTCTTCACAAGTTTCAACTTTGGAAGAAGGATTTTCTGATCAAGAAGAAGTTATTAGTGGTGTGAGTCAAGTTGATTCGGATATCGAAAGTTCAATCTCTTATCAACAAATGTTGCCATTGATGAAGGGTTCTATGGTTGATGTTGATGCAATTGTAGCTGAGCTTGTGATGAAGAATGTAATGTGTGATTTTTTGGTTCATGAGGTTGGAGTCATGGAGAGAAAGTATTGCGAGTCTTCGAGGAAAAGTGAGTTACAGAAGAGTTTGCTTGAGGTGTTGGAATCTGAGAGACTTGTATTGTTGAATGAGAATGCTGGTTTGAGTTATAGAGTTAATAGTTTGGTTGAAGAGAACAAAGAGCTTGCGTCCGAGTCAGTTTTCATCAAGAGAAAAGCCGGTGAGTTAGCTAAGTGTGTGCTGAAGATGAGGGAGGATCATAGAGTTTATCTATTGCATAGGAAAATTGAAGATCTTCAAGGGCAGATACATGGTTTGGAGAAGAGGAACAAGGAGTATTATGAGAGGCTTTTGAGAAGAGAGAGTCAAGAAAATGGCGGTTGTATCGGCAACAAAGGGAAGAATGGTGGTGAAGGGATAGCTTTGGAAGTTCATGTTCAAATGGAGAAGCCGAGAAGGTTTAAGTGGAAAGAAGAAGGAAATTCATCTAGGAAGAATTTTGCTGGGAAGAAAGGTCATAGTTTGTGGAAAAAGTTGAAGAACATGGACTTGTTGCTATGTGGGACAAATCCAACTTGCGCTTGA
Protein sequence

>Msa0923080

MKRAYRQRILMEKGPNIIVDMNKDKVISNSQLISSCIKGFKDKNITTNNMPSWLLTSISDLEERMKMLAIGTSEEEEEGDTFAERAETYYQKRPQLLSLLHDLYNGYVTLSDRYIQTLAKHKHHSRHSSQVSTLEEGFSDQEEVISGVSQVDSDIESSISYQQMLPLMKGSMVDVDAIVAELVMKNVMCDFLVHEVGVMERKYCESSRKSELQKSLLEVLESERLVLLNENAGLSYRVNSLVEENKELASESVFIKRKAGELAKCVLKMREDHRVYLLHRKIEDLQGQIHGLEKRNKEYYERLLRRESQENGGCIGNKGKNGGEGIALEVHVQMEKPRRFKWKEEGNSSRKNFAGKKGHSLWKKLKNMDLLLCGTNPTCA*