AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380670 MtrunA17_Chr3g0134261 95.143 350 11 3 3 351 4 348 0.0 678
Msa0380670 MtrunA17_Chr4g0053381 53.892 334 141 6 22 347 12 340 8.19e-112 330
Msa0380670 MtrunA17_Chr1g0208231 56.766 303 119 6 52 347 66 363 1.29e-110 327
Msa0380670 MtrunA17_Chr5g0412471 34.528 307 170 8 32 322 37 328 2.76e-46 160
Msa0380670 MtrunA17_Chr4g0041721 36.626 243 135 8 87 320 91 323 2.15e-43 153
Msa0380670 MtrunA17_Chr5g0414271 43.137 204 103 3 87 284 76 272 9.56e-42 148
Msa0380670 MtrunA17_Chr3g0133211 44.578 166 92 0 87 252 96 261 1.88e-40 145
Msa0380670 MtrunA17_Chr8g0364521 38.498 213 118 3 86 292 92 297 1.39e-37 138
Msa0380670 MtrunA17_Chr5g0427191 32.323 297 193 5 59 348 55 350 6.85e-36 133
Msa0380670 MtrunA17_Chr8g0367661 33.210 271 166 8 88 350 108 371 8.29e-32 123
Msa0380670 MtrunA17_Chr5g0401271 36.364 187 110 4 84 268 99 278 1.66e-30 119
Msa0380670 MtrunA17_Chr2g0280941 31.760 233 143 7 84 313 37 256 1.62e-27 108
Msa0380670 MtrunA17_Chr3g0134781 46.154 130 65 2 79 204 54 182 2.15e-27 109
Msa0380670 MtrunA17_Chr2g0323361 31.140 228 137 8 65 281 26 244 8.45e-23 97.1
Msa0380670 MtrunA17_Chr4g0054011 27.778 252 156 8 88 334 68 298 2.27e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380670 AT5G67260.1 47.025 353 167 9 2 347 9 348 2.09e-92 281
Msa0380670 AT5G67260.2 47.025 353 167 9 2 347 9 348 7.04e-92 281
Msa0380670 AT4G34160.1 51.812 276 123 4 9 284 17 282 1.17e-91 279
Msa0380670 AT3G50070.1 46.452 310 138 7 7 309 13 301 8.43e-84 258
Msa0380670 AT1G70210.1 40.086 232 130 5 57 281 47 276 2.66e-46 161
Msa0380670 AT2G22490.1 38.197 233 135 4 86 313 95 323 8.14e-44 155
Msa0380670 AT2G22490.2 38.197 233 136 3 86 313 95 324 7.44e-43 152
Msa0380670 AT5G65420.4 41.317 167 92 2 84 247 74 237 5.88e-34 126
Msa0380670 AT5G65420.1 34.322 236 135 5 84 316 74 292 7.00e-34 127
Msa0380670 AT5G65420.2 40.523 153 90 1 84 235 74 226 3.54e-33 124
Msa0380670 AT5G65420.3 32.927 246 135 6 84 316 74 302 8.27e-32 122
Msa0380670 AT5G10440.1 36.735 196 114 5 59 247 36 228 3.97e-28 111
Msa0380670 AT5G10440.2 35.294 187 116 4 59 240 36 222 5.81e-28 109
Msa0380670 AT4G03270.1 30.620 258 160 6 78 330 48 291 5.80e-23 97.8
Msa0380670 AT4G03270.2 30.620 258 159 7 78 330 48 290 1.93e-21 93.6
Msa0380670 AT4G37630.2 38.136 118 72 1 91 208 75 191 1.67e-20 90.1
Msa0380670 AT4G37630.3 39.669 121 68 3 91 208 75 193 1.96e-20 90.1
Msa0380670 AT4G37630.1 39.669 121 68 3 91 208 75 193 4.92e-20 89.7
Msa0380670 AT5G02110.1 32.099 162 105 3 84 244 74 231 3.60e-17 82.0
Msa0380670 AT5G02110.2 35.200 125 76 3 121 244 82 202 3.66e-13 69.7

Find 80 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAGCTTCTTGGTATTCT+TGG 0.183134 3_1:+82490650 Msa0380670:CDS
GTTTATTGTTGTGTTGTTTA+AGG 0.198020 3_1:-82489798 None:intergenic
GACATTTCCATTACACCTTT+TGG 0.225762 3_1:-82490903 None:intergenic
TCTTTCTCTTGCTGCTAAAA+TGG 0.227658 3_1:+82490108 Msa0380670:CDS
CTATAACCCAATGTTACTTT+TGG 0.238967 3_1:+82489700 Msa0380670:CDS
TGTTAGAAACCGACATGTTT+TGG 0.243497 3_1:+82489837 Msa0380670:CDS
CAATGCAACAAACGCAAGTT+TGG 0.256632 3_1:+82490864 Msa0380670:CDS
TTCTCTTTATTGAGACAAAT+TGG 0.258321 3_1:-82489591 None:intergenic
TCTTGAAACCAACCCTGTTT+TGG 0.259066 3_1:+82489919 Msa0380670:CDS
GAAGCATTATGCTCTTATTA+TGG 0.259300 3_1:+82489611 Msa0380670:five_prime_UTR
AAAGTGGAAGTGGATTTATT+TGG 0.277922 3_1:-82491362 None:intergenic
CTTCGAGCAGTTTCCAAAAC+AGG 0.289915 3_1:-82489932 None:intergenic
AGTCTTTCATGATTGATAAC+TGG 0.339927 3_1:-82491197 None:intergenic
GAGTTATCTACCTTCTGTTT+TGG 0.348297 3_1:+82490565 Msa0380670:CDS
GAATATCAAATCCAGCTTCT+TGG 0.360410 3_1:+82490641 Msa0380670:CDS
ATGAAGAGTTTAATAGAAAC+TGG 0.368473 3_1:-82491025 None:intergenic
TTGCTGTCAACTATCTTGAT+AGG 0.370220 3_1:+82490020 Msa0380670:CDS
AATAAATACACTAATTGATA+TGG 0.377674 3_1:-82491322 None:intergenic
CTTCTCTCTGTCATTAGATC+AGG 0.392447 3_1:+82490434 Msa0380670:CDS
ATAAAAGAAAGAGGTGTTGC+TGG 0.406180 3_1:-82490338 None:intergenic
GATTGAAAGATCATCTTTGT+TGG 0.408339 3_1:+82490384 Msa0380670:CDS
TAGGCCCATCTCAGGATTCA+TGG 0.410227 3_1:-82491222 None:intergenic
TTATTTATTTATTTATTGGT+TGG 0.410943 3_1:-82489508 None:intergenic
GTGATAATTCCAATGATTCA+TGG 0.412862 3_1:+82490934 Msa0380670:CDS
AACAGCGTGGAGCCTAGTTT+AGG 0.414590 3_1:+82490614 Msa0380670:CDS
AGCTGTAGAGGGAGAGGAGA+AGG 0.426296 3_1:-82489565 None:intergenic
GAATCCTGAGATGGGCCTAT+AGG 0.426399 3_1:+82491226 Msa0380670:three_prime_UTR
GATCTCTGCTGTGGTCCTAT+AGG 0.429582 3_1:-82491241 None:intergenic
ATTGAAAGATCATCTTTGTT+GGG 0.438979 3_1:+82490385 Msa0380670:CDS
AATGCAACAAACGCAAGTTT+GGG 0.445846 3_1:+82490865 Msa0380670:CDS
AGAAGCTGATGTTGAAACTA+TGG 0.448803 3_1:+82490820 Msa0380670:CDS
TTTAGATGTATCATATAAAG+TGG 0.455994 3_1:-82491378 None:intergenic
TGGAAAAGCTGTAGAGGGAG+AGG 0.460441 3_1:-82489571 None:intergenic
GTTTCAAGAAAGATGTAAAG+TGG 0.463002 3_1:-82489905 None:intergenic
ATGGCTTCTCATTCTGAAAA+CGG 0.471458 3_1:-82490057 None:intergenic
TTCATGATTGATAACTGGTT+TGG 0.472099 3_1:-82491192 None:intergenic
AAGTAGTCCAAAAGGTGTAA+TGG 0.473331 3_1:+82490896 Msa0380670:CDS
CTCGAAGAGAATCTATTGAA+TGG 0.475440 3_1:+82489948 Msa0380670:CDS
TGATATTCATCTCCTAAACT+AGG 0.476214 3_1:-82490626 None:intergenic
TTCCAAGAATACCAAGAAGC+TGG 0.476633 3_1:-82490652 None:intergenic
AACGTATCCAAAAGTAACAT+TGG 0.480126 3_1:-82489707 None:intergenic
TGCTATAGCCCATGAATCAT+TGG 0.482213 3_1:-82490943 None:intergenic
ACTTGAAGATCTAGCAAAAG+AGG 0.483959 3_1:-82490145 None:intergenic
CTGATGTTGAAACTATGGTC+AGG 0.487634 3_1:+82490825 Msa0380670:CDS
ATGACTATCTCTCATGCCTA+TGG 0.495562 3_1:+82491166 Msa0380670:three_prime_UTR
TGTATCATATAAAGTGGAAG+TGG 0.501083 3_1:-82491372 None:intergenic
TGGTCCTATAGGCCCATCTC+AGG 0.502257 3_1:-82491230 None:intergenic
TTTCAAGAAAGATGTAAAGT+GGG 0.508769 3_1:-82489904 None:intergenic
GTTCTGATCTTCTTAGACAA+AGG 0.512885 3_1:-82490996 None:intergenic
ACGTATCCAAAAGTAACATT+GGG 0.515111 3_1:-82489706 None:intergenic
GTACTGTTCAGAAGAACATT+GGG 0.522194 3_1:+82489730 Msa0380670:CDS
ACAAAATCAATAAAAGAAAG+AGG 0.523440 3_1:-82490347 None:intergenic
ACAAATTGGAAAAGCTGTAG+AGG 0.524330 3_1:-82489577 None:intergenic
TGATAATTCCAATGATTCAT+GGG 0.525327 3_1:+82490935 Msa0380670:CDS
TCAATTCCAAGTAGTCCAAA+AGG 0.525691 3_1:+82490888 Msa0380670:CDS
ATCTTCTTAGACAAAGGCTC+TGG 0.533638 3_1:-82490990 None:intergenic
TGTACTGTTCAGAAGAACAT+TGG 0.536203 3_1:+82489729 Msa0380670:CDS
TGATACTTTCAACTCTTGGA+TGG 0.538072 3_1:+82490306 Msa0380670:CDS
AGCAGTTTCCAAAACAGGGT+TGG 0.546697 3_1:-82489927 None:intergenic
GAGTTTCTTAAGAGATGTGA+AGG 0.552834 3_1:+82490407 Msa0380670:CDS
TTCGAGCAGTTTCCAAAACA+GGG 0.563113 3_1:-82489931 None:intergenic
CTCATCTCATATATCTAACA+TGG 0.566897 3_1:+82489670 Msa0380670:exon
ACTATCCATGAATCCTGAGA+TGG 0.568095 3_1:+82491217 Msa0380670:three_prime_UTR
ATCTAGCAAAAGAGGAACAT+GGG 0.578857 3_1:-82490137 None:intergenic
ATAACTGGTTTGGTGACCAT+AGG 0.580281 3_1:-82491182 None:intergenic
CTATGGTCAGGGTATGAAGA+GGG 0.582499 3_1:+82490837 Msa0380670:CDS
GATCTAGCAAAAGAGGAACA+TGG 0.582627 3_1:-82490138 None:intergenic
CTATCCATGAATCCTGAGAT+GGG 0.584232 3_1:+82491218 Msa0380670:three_prime_UTR
GTAGCAGTTGCCAAAACAGA+AGG 0.597534 3_1:-82490575 None:intergenic
GCTGCAAGCTGAGTCATCCA+TGG 0.601969 3_1:-82490076 None:intergenic
TTCTAACAAAGAACAAGTAG+TGG 0.615213 3_1:-82489822 None:intergenic
AGGACCACAGCAGAGATCGT+TGG 0.616799 3_1:+82491246 Msa0380670:three_prime_UTR
TGATGTTGAAACTATGGTCA+GGG 0.619871 3_1:+82490826 Msa0380670:CDS
CAAATTGGAAAAGCTGTAGA+GGG 0.627441 3_1:-82489576 None:intergenic
TTCATCGTCCCAAAACATGT+CGG 0.630209 3_1:-82489846 None:intergenic
CTGTTCAGAAGAACATTGGG+AGG 0.651953 3_1:+82489733 Msa0380670:CDS
AATGCCAACGATCTCTGCTG+TGG 0.662412 3_1:-82491250 None:intergenic
ACTATGGTCAGGGTATGAAG+AGG 0.670130 3_1:+82490836 Msa0380670:CDS
TATGGTCAGGGTATGAAGAG+GGG 0.674081 3_1:+82490838 Msa0380670:CDS
ATAATGGTTACAGGACAAGG+TGG 0.720472 3_1:+82490788 Msa0380670:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATTTATTTATTGGT+TGG - chr3_1:82489511-82489530 None:intergenic 10.0%
!! TTATTTATTTATTTATTGGT+TGG - chr3_1:82489511-82489530 None:intergenic 10.0%
!!! TTGTTTTTGAAATTTTGTTT+AGG + chr3_1:82490229-82490248 Msa0380670:intron 15.0%
!! TTAATATTAATGTGGAATAA+TGG + chr3_1:82490772-82490791 Msa0380670:intron 15.0%
!!! TTTTTTTGCATAATGAAATA+GGG - chr3_1:82491078-82491097 None:intergenic 15.0%
!!! TTTTTTTTGCATAATGAAAT+AGG - chr3_1:82491079-82491098 None:intergenic 15.0%
!! AATAAATACACTAATTGATA+TGG - chr3_1:82491325-82491344 None:intergenic 15.0%
!!! TTGTTTTTGAAATTTTGTTT+AGG + chr3_1:82490229-82490248 Msa0380670:intron 15.0%
!! TTAATATTAATGTGGAATAA+TGG + chr3_1:82490772-82490791 Msa0380670:intron 15.0%
!!! TTTTTTTGCATAATGAAATA+GGG - chr3_1:82491078-82491097 None:intergenic 15.0%
!!! TTTTTTTTGCATAATGAAAT+AGG - chr3_1:82491079-82491098 None:intergenic 15.0%
!! AATAAATACACTAATTGATA+TGG - chr3_1:82491325-82491344 None:intergenic 15.0%
!! ACAAAATCAATAAAAGAAAG+AGG - chr3_1:82490350-82490369 None:intergenic 20.0%
!!! ATGAAGTATTTTTCTTTTTG+AGG + chr3_1:82491125-82491144 Msa0380670:three_prime_UTR 20.0%
!!! TGAAGTATTTTTCTTTTTGA+GGG + chr3_1:82491126-82491145 Msa0380670:three_prime_UTR 20.0%
!! TTTAGATGTATCATATAAAG+TGG - chr3_1:82491381-82491400 None:intergenic 20.0%
!! ACAAAATCAATAAAAGAAAG+AGG - chr3_1:82490350-82490369 None:intergenic 20.0%
!!! ATGAAGTATTTTTCTTTTTG+AGG + chr3_1:82491125-82491144 Msa0380670:three_prime_UTR 20.0%
!!! TGAAGTATTTTTCTTTTTGA+GGG + chr3_1:82491126-82491145 Msa0380670:three_prime_UTR 20.0%
!! TTTAGATGTATCATATAAAG+TGG - chr3_1:82491381-82491400 None:intergenic 20.0%
! TTCTCTTTATTGAGACAAAT+TGG - chr3_1:82489594-82489613 None:intergenic 25.0%
!!! GTTTATTGTTGTGTTGTTTA+AGG - chr3_1:82489801-82489820 None:intergenic 25.0%
! TTTCAAGAAAGATGTAAAGT+GGG - chr3_1:82489907-82489926 None:intergenic 25.0%
!!! ATTTTGATACTTTCAACTCT+TGG + chr3_1:82490302-82490321 Msa0380670:CDS 25.0%
! ATTGAAAGATCATCTTTGTT+GGG + chr3_1:82490385-82490404 Msa0380670:CDS 25.0%
! TACTTCTATAGTTGAAACTA+TGG + chr3_1:82490739-82490758 Msa0380670:intron 25.0%
! TGATAATTCCAATGATTCAT+GGG + chr3_1:82490935-82490954 Msa0380670:CDS 25.0%
! ATGAAGAGTTTAATAGAAAC+TGG - chr3_1:82491028-82491047 None:intergenic 25.0%
! TTCTCTTTATTGAGACAAAT+TGG - chr3_1:82489594-82489613 None:intergenic 25.0%
!!! GTTTATTGTTGTGTTGTTTA+AGG - chr3_1:82489801-82489820 None:intergenic 25.0%
! TTTCAAGAAAGATGTAAAGT+GGG - chr3_1:82489907-82489926 None:intergenic 25.0%
!!! ATTTTGATACTTTCAACTCT+TGG + chr3_1:82490302-82490321 Msa0380670:CDS 25.0%
! ATTGAAAGATCATCTTTGTT+GGG + chr3_1:82490385-82490404 Msa0380670:CDS 25.0%
! TACTTCTATAGTTGAAACTA+TGG + chr3_1:82490739-82490758 Msa0380670:intron 25.0%
! TGATAATTCCAATGATTCAT+GGG + chr3_1:82490935-82490954 Msa0380670:CDS 25.0%
! ATGAAGAGTTTAATAGAAAC+TGG - chr3_1:82491028-82491047 None:intergenic 25.0%
! GAAGCATTATGCTCTTATTA+TGG + chr3_1:82489611-82489630 Msa0380670:five_prime_UTR 30.0%
CTCATCTCATATATCTAACA+TGG + chr3_1:82489670-82489689 Msa0380670:exon 30.0%
!!! CTATAACCCAATGTTACTTT+TGG + chr3_1:82489700-82489719 Msa0380670:CDS 30.0%
ACGTATCCAAAAGTAACATT+GGG - chr3_1:82489709-82489728 None:intergenic 30.0%
AACGTATCCAAAAGTAACAT+TGG - chr3_1:82489710-82489729 None:intergenic 30.0%
TTCTAACAAAGAACAAGTAG+TGG - chr3_1:82489825-82489844 None:intergenic 30.0%
GTTTCAAGAAAGATGTAAAG+TGG - chr3_1:82489908-82489927 None:intergenic 30.0%
!! TTTTGTTTCTTTCAAGAGCT+AGG - chr3_1:82490180-82490199 None:intergenic 30.0%
AGCAAAGACGATTAAAAAGA+TGG + chr3_1:82490277-82490296 Msa0380670:CDS 30.0%
! GATTTTGTCATAAGAAGACT+TGG + chr3_1:82490362-82490381 Msa0380670:CDS 30.0%
GATTGAAAGATCATCTTTGT+TGG + chr3_1:82490384-82490403 Msa0380670:CDS 30.0%
TGATATTCATCTCCTAAACT+AGG - chr3_1:82490629-82490648 None:intergenic 30.0%
TAATGTGGAATAATGGTTAC+AGG + chr3_1:82490779-82490798 Msa0380670:intron 30.0%
GTGATAATTCCAATGATTCA+TGG + chr3_1:82490934-82490953 Msa0380670:CDS 30.0%
!! ATTTTTCTTTTTGAGGGACA+AGG + chr3_1:82491132-82491151 Msa0380670:three_prime_UTR 30.0%
! TTCATGATTGATAACTGGTT+TGG - chr3_1:82491195-82491214 None:intergenic 30.0%
! AGTCTTTCATGATTGATAAC+TGG - chr3_1:82491200-82491219 None:intergenic 30.0%
! AAAGTGGAAGTGGATTTATT+TGG - chr3_1:82491365-82491384 None:intergenic 30.0%
TGTATCATATAAAGTGGAAG+TGG - chr3_1:82491375-82491394 None:intergenic 30.0%
! GAAGCATTATGCTCTTATTA+TGG + chr3_1:82489611-82489630 Msa0380670:five_prime_UTR 30.0%
CTCATCTCATATATCTAACA+TGG + chr3_1:82489670-82489689 Msa0380670:exon 30.0%
!!! CTATAACCCAATGTTACTTT+TGG + chr3_1:82489700-82489719 Msa0380670:CDS 30.0%
ACGTATCCAAAAGTAACATT+GGG - chr3_1:82489709-82489728 None:intergenic 30.0%
AACGTATCCAAAAGTAACAT+TGG - chr3_1:82489710-82489729 None:intergenic 30.0%
TTCTAACAAAGAACAAGTAG+TGG - chr3_1:82489825-82489844 None:intergenic 30.0%
GTTTCAAGAAAGATGTAAAG+TGG - chr3_1:82489908-82489927 None:intergenic 30.0%
!! TTTTGTTTCTTTCAAGAGCT+AGG - chr3_1:82490180-82490199 None:intergenic 30.0%
AGCAAAGACGATTAAAAAGA+TGG + chr3_1:82490277-82490296 Msa0380670:CDS 30.0%
! GATTTTGTCATAAGAAGACT+TGG + chr3_1:82490362-82490381 Msa0380670:CDS 30.0%
GATTGAAAGATCATCTTTGT+TGG + chr3_1:82490384-82490403 Msa0380670:CDS 30.0%
TGATATTCATCTCCTAAACT+AGG - chr3_1:82490629-82490648 None:intergenic 30.0%
TAATGTGGAATAATGGTTAC+AGG + chr3_1:82490779-82490798 Msa0380670:intron 30.0%
GTGATAATTCCAATGATTCA+TGG + chr3_1:82490934-82490953 Msa0380670:CDS 30.0%
!! ATTTTTCTTTTTGAGGGACA+AGG + chr3_1:82491132-82491151 Msa0380670:three_prime_UTR 30.0%
! TTCATGATTGATAACTGGTT+TGG - chr3_1:82491195-82491214 None:intergenic 30.0%
! AGTCTTTCATGATTGATAAC+TGG - chr3_1:82491200-82491219 None:intergenic 30.0%
! AAAGTGGAAGTGGATTTATT+TGG - chr3_1:82491365-82491384 None:intergenic 30.0%
TGTATCATATAAAGTGGAAG+TGG - chr3_1:82491375-82491394 None:intergenic 30.0%
CAAATTGGAAAAGCTGTAGA+GGG - chr3_1:82489579-82489598 None:intergenic 35.0%
ACAAATTGGAAAAGCTGTAG+AGG - chr3_1:82489580-82489599 None:intergenic 35.0%
TGTACTGTTCAGAAGAACAT+TGG + chr3_1:82489729-82489748 Msa0380670:CDS 35.0%
GTACTGTTCAGAAGAACATT+GGG + chr3_1:82489730-82489749 Msa0380670:CDS 35.0%
! TGTTAGAAACCGACATGTTT+TGG + chr3_1:82489837-82489856 Msa0380670:CDS 35.0%
! GTTAGAAACCGACATGTTTT+GGG + chr3_1:82489838-82489857 Msa0380670:CDS 35.0%
CTCGAAGAGAATCTATTGAA+TGG + chr3_1:82489948-82489967 Msa0380670:CDS 35.0%
TTGCTGTCAACTATCTTGAT+AGG + chr3_1:82490020-82490039 Msa0380670:CDS 35.0%
! ATGGCTTCTCATTCTGAAAA+CGG - chr3_1:82490060-82490079 None:intergenic 35.0%
TCTTTCTCTTGCTGCTAAAA+TGG + chr3_1:82490108-82490127 Msa0380670:CDS 35.0%
ATCTAGCAAAAGAGGAACAT+GGG - chr3_1:82490140-82490159 None:intergenic 35.0%
ACTTGAAGATCTAGCAAAAG+AGG - chr3_1:82490148-82490167 None:intergenic 35.0%
TGATACTTTCAACTCTTGGA+TGG + chr3_1:82490306-82490325 Msa0380670:CDS 35.0%
!! ATAAAAGAAAGAGGTGTTGC+TGG - chr3_1:82490341-82490360 None:intergenic 35.0%
GAGTTTCTTAAGAGATGTGA+AGG + chr3_1:82490407-82490426 Msa0380670:CDS 35.0%
! GAGTTATCTACCTTCTGTTT+TGG + chr3_1:82490565-82490584 Msa0380670:CDS 35.0%
GAATATCAAATCCAGCTTCT+TGG + chr3_1:82490641-82490660 Msa0380670:CDS 35.0%
AGAAGCTGATGTTGAAACTA+TGG + chr3_1:82490820-82490839 Msa0380670:CDS 35.0%
TGATGTTGAAACTATGGTCA+GGG + chr3_1:82490826-82490845 Msa0380670:CDS 35.0%
AATGCAACAAACGCAAGTTT+GGG + chr3_1:82490865-82490884 Msa0380670:CDS 35.0%
TCAATTCCAAGTAGTCCAAA+AGG + chr3_1:82490888-82490907 Msa0380670:CDS 35.0%
! ATTACACCTTTTGGACTACT+TGG - chr3_1:82490897-82490916 None:intergenic 35.0%
! AAGTAGTCCAAAAGGTGTAA+TGG + chr3_1:82490896-82490915 Msa0380670:CDS 35.0%
! GACATTTCCATTACACCTTT+TGG - chr3_1:82490906-82490925 None:intergenic 35.0%
GTTCTGATCTTCTTAGACAA+AGG - chr3_1:82490999-82491018 None:intergenic 35.0%
CAAATTGGAAAAGCTGTAGA+GGG - chr3_1:82489579-82489598 None:intergenic 35.0%
ACAAATTGGAAAAGCTGTAG+AGG - chr3_1:82489580-82489599 None:intergenic 35.0%
TGTACTGTTCAGAAGAACAT+TGG + chr3_1:82489729-82489748 Msa0380670:CDS 35.0%
GTACTGTTCAGAAGAACATT+GGG + chr3_1:82489730-82489749 Msa0380670:CDS 35.0%
! TGTTAGAAACCGACATGTTT+TGG + chr3_1:82489837-82489856 Msa0380670:CDS 35.0%
! GTTAGAAACCGACATGTTTT+GGG + chr3_1:82489838-82489857 Msa0380670:CDS 35.0%
CTCGAAGAGAATCTATTGAA+TGG + chr3_1:82489948-82489967 Msa0380670:CDS 35.0%
TTGCTGTCAACTATCTTGAT+AGG + chr3_1:82490020-82490039 Msa0380670:CDS 35.0%
! ATGGCTTCTCATTCTGAAAA+CGG - chr3_1:82490060-82490079 None:intergenic 35.0%
TCTTTCTCTTGCTGCTAAAA+TGG + chr3_1:82490108-82490127 Msa0380670:CDS 35.0%
ATCTAGCAAAAGAGGAACAT+GGG - chr3_1:82490140-82490159 None:intergenic 35.0%
ACTTGAAGATCTAGCAAAAG+AGG - chr3_1:82490148-82490167 None:intergenic 35.0%
TGATACTTTCAACTCTTGGA+TGG + chr3_1:82490306-82490325 Msa0380670:CDS 35.0%
!! ATAAAAGAAAGAGGTGTTGC+TGG - chr3_1:82490341-82490360 None:intergenic 35.0%
GAGTTTCTTAAGAGATGTGA+AGG + chr3_1:82490407-82490426 Msa0380670:CDS 35.0%
! GAGTTATCTACCTTCTGTTT+TGG + chr3_1:82490565-82490584 Msa0380670:CDS 35.0%
GAATATCAAATCCAGCTTCT+TGG + chr3_1:82490641-82490660 Msa0380670:CDS 35.0%
AGAAGCTGATGTTGAAACTA+TGG + chr3_1:82490820-82490839 Msa0380670:CDS 35.0%
TGATGTTGAAACTATGGTCA+GGG + chr3_1:82490826-82490845 Msa0380670:CDS 35.0%
AATGCAACAAACGCAAGTTT+GGG + chr3_1:82490865-82490884 Msa0380670:CDS 35.0%
TCAATTCCAAGTAGTCCAAA+AGG + chr3_1:82490888-82490907 Msa0380670:CDS 35.0%
! ATTACACCTTTTGGACTACT+TGG - chr3_1:82490897-82490916 None:intergenic 35.0%
! AAGTAGTCCAAAAGGTGTAA+TGG + chr3_1:82490896-82490915 Msa0380670:CDS 35.0%
! GACATTTCCATTACACCTTT+TGG - chr3_1:82490906-82490925 None:intergenic 35.0%
GTTCTGATCTTCTTAGACAA+AGG - chr3_1:82490999-82491018 None:intergenic 35.0%
TTCATCGTCCCAAAACATGT+CGG - chr3_1:82489849-82489868 None:intergenic 40.0%
! TCTTGAAACCAACCCTGTTT+TGG + chr3_1:82489919-82489938 Msa0380670:CDS 40.0%
TTCGAGCAGTTTCCAAAACA+GGG - chr3_1:82489934-82489953 None:intergenic 40.0%
! GTTTTCAGAATGAGAAGCCA+TGG + chr3_1:82490059-82490078 Msa0380670:CDS 40.0%
GATCTAGCAAAAGAGGAACA+TGG - chr3_1:82490141-82490160 None:intergenic 40.0%
CTTCTCTCTGTCATTAGATC+AGG + chr3_1:82490434-82490453 Msa0380670:CDS 40.0%
!!! TGTTTTGGCAACTGCTACAA+TGG + chr3_1:82490580-82490599 Msa0380670:CDS 40.0%
ATCCAGCTTCTTGGTATTCT+TGG + chr3_1:82490650-82490669 Msa0380670:CDS 40.0%
TTCCAAGAATACCAAGAAGC+TGG - chr3_1:82490655-82490674 None:intergenic 40.0%
GGAATAATGGTTACAGGACA+AGG + chr3_1:82490785-82490804 Msa0380670:intron 40.0%
ATAATGGTTACAGGACAAGG+TGG + chr3_1:82490788-82490807 Msa0380670:intron 40.0%
CTGATGTTGAAACTATGGTC+AGG + chr3_1:82490825-82490844 Msa0380670:CDS 40.0%
CAATGCAACAAACGCAAGTT+TGG + chr3_1:82490864-82490883 Msa0380670:CDS 40.0%
TGCTATAGCCCATGAATCAT+TGG - chr3_1:82490946-82490965 None:intergenic 40.0%
ATCTTCTTAGACAAAGGCTC+TGG - chr3_1:82490993-82491012 None:intergenic 40.0%
ATGACTATCTCTCATGCCTA+TGG + chr3_1:82491166-82491185 Msa0380670:three_prime_UTR 40.0%
!! ATAACTGGTTTGGTGACCAT+AGG - chr3_1:82491185-82491204 None:intergenic 40.0%
ACTATCCATGAATCCTGAGA+TGG + chr3_1:82491217-82491236 Msa0380670:three_prime_UTR 40.0%
CTATCCATGAATCCTGAGAT+GGG + chr3_1:82491218-82491237 Msa0380670:three_prime_UTR 40.0%
! GAGATCGTTGGCATTTTATG+AGG + chr3_1:82491258-82491277 Msa0380670:three_prime_UTR 40.0%
TTCATCGTCCCAAAACATGT+CGG - chr3_1:82489849-82489868 None:intergenic 40.0%
! TCTTGAAACCAACCCTGTTT+TGG + chr3_1:82489919-82489938 Msa0380670:CDS 40.0%
TTCGAGCAGTTTCCAAAACA+GGG - chr3_1:82489934-82489953 None:intergenic 40.0%
! GTTTTCAGAATGAGAAGCCA+TGG + chr3_1:82490059-82490078 Msa0380670:CDS 40.0%
GATCTAGCAAAAGAGGAACA+TGG - chr3_1:82490141-82490160 None:intergenic 40.0%
CTTCTCTCTGTCATTAGATC+AGG + chr3_1:82490434-82490453 Msa0380670:CDS 40.0%
!!! TGTTTTGGCAACTGCTACAA+TGG + chr3_1:82490580-82490599 Msa0380670:CDS 40.0%
ATCCAGCTTCTTGGTATTCT+TGG + chr3_1:82490650-82490669 Msa0380670:CDS 40.0%
TTCCAAGAATACCAAGAAGC+TGG - chr3_1:82490655-82490674 None:intergenic 40.0%
GGAATAATGGTTACAGGACA+AGG + chr3_1:82490785-82490804 Msa0380670:intron 40.0%
ATAATGGTTACAGGACAAGG+TGG + chr3_1:82490788-82490807 Msa0380670:intron 40.0%
CTGATGTTGAAACTATGGTC+AGG + chr3_1:82490825-82490844 Msa0380670:CDS 40.0%
CAATGCAACAAACGCAAGTT+TGG + chr3_1:82490864-82490883 Msa0380670:CDS 40.0%
TGCTATAGCCCATGAATCAT+TGG - chr3_1:82490946-82490965 None:intergenic 40.0%
ATCTTCTTAGACAAAGGCTC+TGG - chr3_1:82490993-82491012 None:intergenic 40.0%
ATGACTATCTCTCATGCCTA+TGG + chr3_1:82491166-82491185 Msa0380670:three_prime_UTR 40.0%
!! ATAACTGGTTTGGTGACCAT+AGG - chr3_1:82491185-82491204 None:intergenic 40.0%
ACTATCCATGAATCCTGAGA+TGG + chr3_1:82491217-82491236 Msa0380670:three_prime_UTR 40.0%
CTATCCATGAATCCTGAGAT+GGG + chr3_1:82491218-82491237 Msa0380670:three_prime_UTR 40.0%
! GAGATCGTTGGCATTTTATG+AGG + chr3_1:82491258-82491277 Msa0380670:three_prime_UTR 40.0%
CTGTTCAGAAGAACATTGGG+AGG + chr3_1:82489733-82489752 Msa0380670:CDS 45.0%
AGCAGTTTCCAAAACAGGGT+TGG - chr3_1:82489930-82489949 None:intergenic 45.0%
CTTCGAGCAGTTTCCAAAAC+AGG - chr3_1:82489935-82489954 None:intergenic 45.0%
GTAGCAGTTGCCAAAACAGA+AGG - chr3_1:82490578-82490597 None:intergenic 45.0%
! GGTTCATGTTTTCAACAGCG+TGG + chr3_1:82490601-82490620 Msa0380670:CDS 45.0%
ACTATGGTCAGGGTATGAAG+AGG + chr3_1:82490836-82490855 Msa0380670:CDS 45.0%
CTATGGTCAGGGTATGAAGA+GGG + chr3_1:82490837-82490856 Msa0380670:CDS 45.0%
TATGGTCAGGGTATGAAGAG+GGG + chr3_1:82490838-82490857 Msa0380670:CDS 45.0%
CTGTTCAGAAGAACATTGGG+AGG + chr3_1:82489733-82489752 Msa0380670:CDS 45.0%
AGCAGTTTCCAAAACAGGGT+TGG - chr3_1:82489930-82489949 None:intergenic 45.0%
CTTCGAGCAGTTTCCAAAAC+AGG - chr3_1:82489935-82489954 None:intergenic 45.0%
GTAGCAGTTGCCAAAACAGA+AGG - chr3_1:82490578-82490597 None:intergenic 45.0%
! GGTTCATGTTTTCAACAGCG+TGG + chr3_1:82490601-82490620 Msa0380670:CDS 45.0%
ACTATGGTCAGGGTATGAAG+AGG + chr3_1:82490836-82490855 Msa0380670:CDS 45.0%
CTATGGTCAGGGTATGAAGA+GGG + chr3_1:82490837-82490856 Msa0380670:CDS 45.0%
TATGGTCAGGGTATGAAGAG+GGG + chr3_1:82490838-82490857 Msa0380670:CDS 45.0%
!!! GTTTTTATTTATTTATTTAT+TGG - chr3_1:82489515-82489534 None:intergenic 5.0%
!! TATTAATATTAATATTAATG+TGG + chr3_1:82490764-82490783 Msa0380670:intron 5.0%
!!! GTTTTTATTTATTTATTTAT+TGG - chr3_1:82489515-82489534 None:intergenic 5.0%
!! TATTAATATTAATATTAATG+TGG + chr3_1:82490764-82490783 Msa0380670:intron 5.0%
TGGAAAAGCTGTAGAGGGAG+AGG - chr3_1:82489574-82489593 None:intergenic 50.0%
AACAGCGTGGAGCCTAGTTT+AGG + chr3_1:82490614-82490633 Msa0380670:CDS 50.0%
TAGGCCCATCTCAGGATTCA+TGG - chr3_1:82491225-82491244 None:intergenic 50.0%
GAATCCTGAGATGGGCCTAT+AGG + chr3_1:82491226-82491245 Msa0380670:three_prime_UTR 50.0%
GATCTCTGCTGTGGTCCTAT+AGG - chr3_1:82491244-82491263 None:intergenic 50.0%
AATGCCAACGATCTCTGCTG+TGG - chr3_1:82491253-82491272 None:intergenic 50.0%
TGGAAAAGCTGTAGAGGGAG+AGG - chr3_1:82489574-82489593 None:intergenic 50.0%
AACAGCGTGGAGCCTAGTTT+AGG + chr3_1:82490614-82490633 Msa0380670:CDS 50.0%
TAGGCCCATCTCAGGATTCA+TGG - chr3_1:82491225-82491244 None:intergenic 50.0%
GAATCCTGAGATGGGCCTAT+AGG + chr3_1:82491226-82491245 Msa0380670:three_prime_UTR 50.0%
GATCTCTGCTGTGGTCCTAT+AGG - chr3_1:82491244-82491263 None:intergenic 50.0%
AATGCCAACGATCTCTGCTG+TGG - chr3_1:82491253-82491272 None:intergenic 50.0%
AGCTGTAGAGGGAGAGGAGA+AGG - chr3_1:82489568-82489587 None:intergenic 55.0%
GCTGCAAGCTGAGTCATCCA+TGG - chr3_1:82490079-82490098 None:intergenic 55.0%
TGGTCCTATAGGCCCATCTC+AGG - chr3_1:82491233-82491252 None:intergenic 55.0%
AGGACCACAGCAGAGATCGT+TGG + chr3_1:82491246-82491265 Msa0380670:three_prime_UTR 55.0%
AGCTGTAGAGGGAGAGGAGA+AGG - chr3_1:82489568-82489587 None:intergenic 55.0%
GCTGCAAGCTGAGTCATCCA+TGG - chr3_1:82490079-82490098 None:intergenic 55.0%
TGGTCCTATAGGCCCATCTC+AGG - chr3_1:82491233-82491252 None:intergenic 55.0%
AGGACCACAGCAGAGATCGT+TGG + chr3_1:82491246-82491265 Msa0380670:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82489502 82491413 82489502 ID=Msa0380670;Name=Msa0380670
chr3_1 mRNA 82489502 82491413 82489502 ID=Msa0380670-mRNA-1;Parent=Msa0380670;Name=Msa0380670-mRNA-1;_AED=0.08;_eAED=0.08;_QI=187|1|1|1|1|1|4|364|353
chr3_1 exon 82489502 82490165 82489502 ID=Msa0380670-mRNA-1:exon:21063;Parent=Msa0380670-mRNA-1
chr3_1 exon 82490251 82490455 82490251 ID=Msa0380670-mRNA-1:exon:21064;Parent=Msa0380670-mRNA-1
chr3_1 exon 82490552 82490682 82490552 ID=Msa0380670-mRNA-1:exon:21065;Parent=Msa0380670-mRNA-1
chr3_1 exon 82490801 82491413 82490801 ID=Msa0380670-mRNA-1:exon:21066;Parent=Msa0380670-mRNA-1
chr3_1 five_prime_UTR 82489502 82489688 82489502 ID=Msa0380670-mRNA-1:five_prime_utr;Parent=Msa0380670-mRNA-1
chr3_1 CDS 82489689 82490165 82489689 ID=Msa0380670-mRNA-1:cds;Parent=Msa0380670-mRNA-1
chr3_1 CDS 82490251 82490455 82490251 ID=Msa0380670-mRNA-1:cds;Parent=Msa0380670-mRNA-1
chr3_1 CDS 82490552 82490682 82490552 ID=Msa0380670-mRNA-1:cds;Parent=Msa0380670-mRNA-1
chr3_1 CDS 82490801 82491049 82490801 ID=Msa0380670-mRNA-1:cds;Parent=Msa0380670-mRNA-1
chr3_1 three_prime_UTR 82491050 82491413 82491050 ID=Msa0380670-mRNA-1:three_prime_utr;Parent=Msa0380670-mRNA-1
Gene Sequence

>Msa0380670

ATGGCTCAACACTATAACCCAATGTTACTTTTGGATACGTTGTACTGTTCAGAAGAACATTGGGAGGAACAAGATGAGTTAGAGTTTGAGTTTGAGTACGATAATGTTTCCTTAAACAACACAACAATAAACACCACTACTTGTTCTTTGTTAGAAACCGACATGTTTTGGGACGATGAAGAACTAAAATCACTTCTCAACAAAGAACAACAAAACCCACTTTACATCTTTCTTGAAACCAACCCTGTTTTGGAAACTGCTCGAAGAGAATCTATTGAATGGATTCTCAAAGTGAATGCTCATTACTCTTTCTCAGCTCTTACTGCTGTTCTTGCTGTCAACTATCTTGATAGGTTTCTCTTCAGTTTCCGTTTTCAGAATGAGAAGCCATGGATGACTCAGCTTGCAGCTGTTGCTTGTCTTTCTCTTGCTGCTAAAATGGAAGAGACCCATGTTCCTCTTTTGCTAGATCTTCAAGTTGAAGAGAGTAGATACTTGTTTGAAGCAAAGACGATTAAAAAGATGGAGATTTTGATACTTTCAACTCTTGGATGGAAGATGAGTCCAGCAACACCTCTTTCTTTTATTGATTTTGTCATAAGAAGACTTGGATTGAAAGATCATCTTTGTTGGGAGTTTCTTAAGAGATGTGAAGGTGTTCTTCTCTCTGTCATTAGATCAGATTCTAAGTTTATGAGTTATCTACCTTCTGTTTTGGCAACTGCTACAATGGTTCATGTTTTCAACAGCGTGGAGCCTAGTTTAGGAGATGAATATCAAATCCAGCTTCTTGGTATTCTTGGAATCAACAAAGACAAGGTGGATGAATGTGAGAAGCTGATGTTGAAACTATGGTCAGGGTATGAAGAGGGGAATCAATGCAACAAACGCAAGTTTGGGTCAATTCCAAGTAGTCCAAAAGGTGTAATGGAAATGTCGTTTAGCTGTGATAATTCCAATGATTCATGGGCTATAGCAGCAACAGCTTCTGTATCATCTTCACCAGAGCCTTTGTCTAAGAAGATCAGAACTCAAGACCAGTTTCTATTAAACTCTTCATAG

Protein sequence

>Msa0380670

MAQHYNPMLLLDTLYCSEEHWEEQDELEFEFEYDNVSLNNTTINTTTCSLLETDMFWDDEELKSLLNKEQQNPLYIFLETNPVLETARRESIEWILKVNAHYSFSALTAVLAVNYLDRFLFSFRFQNEKPWMTQLAAVACLSLAAKMEETHVPLLLDLQVEESRYLFEAKTIKKMEILILSTLGWKMSPATPLSFIDFVIRRLGLKDHLCWEFLKRCEGVLLSVIRSDSKFMSYLPSVLATATMVHVFNSVEPSLGDEYQIQLLGILGINKDKVDECEKLMLKLWSGYEEGNQCNKRKFGSIPSSPKGVMEMSFSCDNSNDSWAIAATASVSSSPEPLSKKIRTQDQFLLNSS*