AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0936040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936040 MtrunA17_Chr6g0451841 98.339 542 8 1 1 542 1 541 0.0 1090
Msa0936040 MtrunA17_Chr4g0014871 38.745 542 292 10 12 537 37 554 1.02e-129 390
Msa0936040 MtrunA17_Chr4g0014841 37.803 537 301 7 12 537 36 550 1.05e-126 382
Msa0936040 MtrunA17_Chr4g0014781 38.333 540 302 7 12 540 36 555 4.96e-126 380
Msa0936040 MtrunA17_Chr4g0014791 37.616 537 302 9 12 537 36 550 3.55e-125 378
Msa0936040 MtrunA17_Chr3g0077151 38.078 541 294 9 12 540 35 546 7.71e-125 377
Msa0936040 MtrunA17_Chr4g0014801 37.523 549 308 8 4 537 24 552 4.39e-122 370
Msa0936040 MtrunA17_Chr8g0353031 35.420 559 306 14 12 542 25 556 3.05e-114 350
Msa0936040 MtrunA17_Chr4g0008651 34.901 553 311 10 16 542 45 574 1.27e-113 349
Msa0936040 MtrunA17_Chr4g0005901 36.166 553 304 9 13 537 40 571 3.01e-111 343
Msa0936040 MtrunA17_Chr7g0240381 34.358 553 308 10 12 538 36 559 7.19e-110 339
Msa0936040 MtrunA17_Chr3g0112671 35.556 540 293 10 24 538 52 561 5.49e-109 337
Msa0936040 MtrunA17_Chr4g0014861 39.294 425 238 7 119 537 19 429 1.62e-108 331
Msa0936040 MtrunA17_Chr7g0241741 34.539 553 313 11 13 537 30 561 6.12e-108 334
Msa0936040 MtrunA17_Chr8g0375311 33.986 562 315 11 12 540 47 585 3.23e-106 330
Msa0936040 MtrunA17_Chr3g0112611 34.120 551 312 12 16 538 43 570 5.46e-106 330
Msa0936040 MtrunA17_Chr3g0114501 35.145 552 319 9 12 540 29 564 1.50e-105 328
Msa0936040 MtrunA17_Chr8g0375291 34.483 551 301 12 12 527 47 572 1.28e-101 318
Msa0936040 MtrunA17_Chr3g0104011 32.374 556 326 10 13 538 30 565 1.69e-98 309
Msa0936040 MtrunA17_Chr8g0375351 33.514 555 315 11 12 534 47 579 3.47e-98 309
Msa0936040 MtrunA17_Chr8g0375341 33.746 566 311 11 12 540 47 585 3.90e-98 309
Msa0936040 MtrunA17_Chr7g0261881 31.646 553 331 10 12 536 34 567 3.17e-95 301
Msa0936040 MtrunA17_Chr7g0261771 33.095 559 326 13 6 536 33 571 7.32e-95 301
Msa0936040 MtrunA17_Chr7g0261811 31.826 553 330 10 12 536 34 567 2.79e-94 299
Msa0936040 MtrunA17_Chr1g0187241 32.028 562 329 14 12 542 33 572 2.04e-93 297
Msa0936040 MtrunA17_Chr3g0142101 32.353 544 314 13 23 540 53 568 5.46e-91 290
Msa0936040 MtrunA17_Chr1g0166711 33.452 562 320 15 12 542 32 570 6.19e-91 290
Msa0936040 MtrunA17_Chr7g0261791 31.560 564 328 11 12 541 36 575 7.08e-91 290
Msa0936040 MtrunA17_Chr8g0375321 32.086 561 327 10 12 540 44 582 9.94e-91 290
Msa0936040 MtrunA17_Chr8g0375331 32.270 533 307 10 12 512 31 541 8.47e-88 281
Msa0936040 MtrunA17_Chr1g0166741 31.485 559 322 14 12 539 34 562 1.96e-87 281
Msa0936040 MtrunA17_Chr3g0082631 36.142 451 240 11 119 541 33 463 1.13e-86 276
Msa0936040 MtrunA17_Chr7g0261851 31.272 566 339 12 6 542 30 574 7.79e-86 277
Msa0936040 MtrunA17_Chr8g0375361 32.079 558 325 11 12 537 46 581 9.72e-85 274
Msa0936040 MtrunA17_Chr7g0217461 31.720 558 320 9 15 534 34 568 3.59e-83 270
Msa0936040 MtrunA17_Chr1g0166791 30.088 565 336 14 12 542 31 570 1.30e-82 268
Msa0936040 MtrunA17_Chr5g0399061 32.904 544 324 11 23 539 45 574 6.62e-82 266
Msa0936040 MtrunA17_Chr1g0166771 31.629 528 300 14 24 520 10 507 7.14e-82 265
Msa0936040 MtrunA17_Chr7g0255621 30.220 546 327 10 24 536 39 563 9.52e-82 266
Msa0936040 MtrunA17_Chr5g0415791 30.496 564 316 10 24 541 48 581 1.02e-81 266
Msa0936040 MtrunA17_Chr7g0261661 32.373 451 257 9 108 536 29 453 1.78e-81 263
Msa0936040 MtrunA17_Chr4g0054891 31.418 557 319 11 16 536 121 650 3.47e-81 267
Msa0936040 MtrunA17_Chr5g0399071 32.374 556 311 14 23 539 43 572 3.98e-81 265
Msa0936040 MtrunA17_Chr4g0056431 30.623 578 317 8 12 539 32 575 9.09e-81 264
Msa0936040 MtrunA17_Chr8g0362711 31.720 558 326 11 4 527 25 561 9.48e-81 263
Msa0936040 MtrunA17_Chr5g0422881 29.872 549 344 8 24 542 39 576 4.95e-80 261
Msa0936040 MtrunA17_Chr7g0214461 28.391 553 352 11 6 534 79 611 5.80e-77 254
Msa0936040 MtrunA17_Chr5g0400371 29.735 565 338 12 6 534 114 655 2.74e-75 251
Msa0936040 MtrunA17_Chr3g0142091 31.181 542 320 10 23 537 44 559 2.79e-75 249
Msa0936040 MtrunA17_Chr7g0255601 29.358 545 331 10 24 535 46 569 5.15e-75 249
Msa0936040 MtrunA17_Chr5g0415961 30.530 547 326 12 16 527 35 562 7.43e-75 248
Msa0936040 MtrunA17_Chr1g0213711 29.250 547 335 12 16 534 32 554 1.25e-74 247
Msa0936040 MtrunA17_Chr4g0059991 30.108 558 329 11 24 541 41 577 1.90e-73 244
Msa0936040 MtrunA17_Chr1g0166731 34.163 442 249 12 120 542 49 467 1.94e-73 241
Msa0936040 MtrunA17_Chr4g0059971 28.571 546 338 11 24 534 53 581 1.46e-72 242
Msa0936040 MtrunA17_Chr4g0059981 30.700 557 329 15 24 542 50 587 3.39e-72 241
Msa0936040 MtrunA17_Chr7g0255611 29.908 545 328 11 24 535 48 571 1.16e-70 237
Msa0936040 MtrunA17_Chr8g0362781 28.272 573 320 11 23 540 48 584 4.91e-70 235
Msa0936040 MtrunA17_Chr2g0276751 28.857 551 344 11 11 540 44 567 2.07e-69 234
Msa0936040 MtrunA17_Chr4g0063591 30.419 549 336 10 16 539 33 560 4.40e-69 232
Msa0936040 MtrunA17_Chr8g0390331 30.055 549 326 14 24 539 34 557 5.88e-68 229
Msa0936040 MtrunA17_Chr2g0284701 26.620 571 359 10 12 540 39 591 1.73e-67 229
Msa0936040 MtrunA17_Chr7g0218851 27.128 564 356 14 1 534 43 581 6.44e-67 227
Msa0936040 MtrunA17_Chr4g0011471 29.358 545 322 9 27 534 38 556 6.83e-67 226
Msa0936040 MtrunA17_Chr5g0439381 28.445 566 310 13 24 541 47 565 1.13e-64 221
Msa0936040 MtrunA17_Chr7g0261751 30.040 496 270 10 6 441 33 511 3.45e-64 218
Msa0936040 MtrunA17_Chr1g0157601 28.029 553 339 13 16 534 26 553 2.01e-63 217
Msa0936040 MtrunA17_Chr1g0193391 29.032 558 353 12 5 542 17 551 4.02e-63 217
Msa0936040 MtrunA17_Chr2g0331521 28.125 576 351 16 5 542 20 570 4.89e-63 216
Msa0936040 MtrunA17_Chr3g0112631 40.417 240 142 1 299 538 35 273 6.71e-63 207
Msa0936040 MtrunA17_Chr7g0271221 29.295 553 358 10 5 542 17 551 8.08e-63 216
Msa0936040 MtrunA17_Chr4g0003761 28.470 562 333 16 16 538 41 572 1.34e-61 213
Msa0936040 MtrunA17_Chr3g0133341 28.042 567 348 12 8 541 15 554 1.43e-61 212
Msa0936040 MtrunA17_Chr4g0011041 28.700 554 346 13 12 534 43 578 1.83e-61 212
Msa0936040 MtrunA17_Chr1g0157611 29.068 547 341 11 16 534 27 554 2.82e-61 211
Msa0936040 MtrunA17_Chr1g0147631 27.636 550 346 11 16 534 36 564 3.74e-61 211
Msa0936040 MtrunA17_Chr8g0379971 27.037 540 322 12 22 506 37 559 2.79e-60 209
Msa0936040 MtrunA17_Chr1g0177591 28.839 534 322 15 30 538 67 567 4.77e-60 208
Msa0936040 MtrunA17_Chr2g0331471 27.817 568 356 16 5 538 85 632 5.31e-60 211
Msa0936040 MtrunA17_Chr4g0060001 28.080 552 326 14 24 534 48 569 3.57e-59 206
Msa0936040 MtrunA17_Chr2g0331481 27.622 572 360 16 1 538 18 569 4.03e-59 207
Msa0936040 MtrunA17_Chr1g0177631 31.891 439 243 14 123 538 33 438 3.12e-58 200
Msa0936040 MtrunA17_Chr8g0362801 27.533 454 281 8 108 537 32 461 7.21e-58 200
Msa0936040 MtrunA17_Chr1g0157621 29.220 551 306 14 30 534 5 517 8.00e-58 202
Msa0936040 MtrunA17_Chr8g0379991 26.888 543 316 11 30 506 5 532 4.68e-57 200
Msa0936040 MtrunA17_Chr1g0177611 30.524 439 249 14 123 538 33 438 5.68e-55 191
Msa0936040 MtrunA17_Chr2g0331511 26.598 579 356 16 1 538 15 565 2.61e-54 194
Msa0936040 MtrunA17_Chr5g0415841 28.409 440 268 10 120 535 42 458 7.96e-54 189
Msa0936040 MtrunA17_Chr7g0214731 26.277 548 359 11 24 539 80 614 8.57e-54 192
Msa0936040 MtrunA17_Chr7g0240271 26.374 546 350 11 24 536 43 569 1.59e-53 191
Msa0936040 MtrunA17_Chr4g0069581 26.047 549 341 12 23 539 4 519 5.78e-53 189
Msa0936040 MtrunA17_Chr2g0331461 26.631 567 366 14 1 535 18 566 1.12e-51 186
Msa0936040 MtrunA17_Chr3g0142121 34.601 263 161 3 278 540 19 270 1.61e-50 175
Msa0936040 MtrunA17_Chr2g0326211 25.400 563 360 10 1 536 16 545 1.88e-48 176
Msa0936040 MtrunA17_Chr2g0325951 25.187 536 344 11 27 536 41 545 2.62e-48 176
Msa0936040 MtrunA17_Chr2g0325961 25.872 545 343 12 20 536 35 546 3.45e-48 175
Msa0936040 MtrunA17_Chr7g0234181 30.913 427 248 11 116 534 26 413 2.98e-47 170
Msa0936040 MtrunA17_Chr4g0060071 34.328 268 169 4 277 541 39 302 3.37e-47 166
Msa0936040 MtrunA17_Chr7g0240281 25.180 556 342 10 24 534 43 569 1.34e-46 172
Msa0936040 MtrunA17_Chr7g0240131 27.578 446 275 12 115 534 33 456 6.20e-44 162
Msa0936040 MtrunA17_Chr7g0235521 27.578 446 275 12 115 534 33 456 2.07e-43 160
Msa0936040 MtrunA17_Chr7g0240211 27.314 443 280 11 115 534 33 456 6.87e-43 159
Msa0936040 MtrunA17_Chr7g0240181 27.314 443 280 11 115 534 33 456 7.08e-43 159
Msa0936040 MtrunA17_Chr7g0261721 36.634 202 126 2 336 536 1 201 1.18e-42 152
Msa0936040 MtrunA17_Chr7g0234151 29.358 436 251 9 112 534 27 418 2.94e-40 150
Msa0936040 MtrunA17_Chr7g0234381 28.842 423 262 8 116 534 31 418 5.09e-40 150
Msa0936040 MtrunA17_Chr7g0240151 26.269 453 254 13 115 534 33 438 8.25e-38 145
Msa0936040 MtrunA17_Chr7g0261731 29.641 334 179 9 6 307 33 342 1.60e-36 139
Msa0936040 MtrunA17_Chr3g0142111 33.898 236 130 4 23 248 64 283 6.86e-33 128
Msa0936040 MtrunA17_Chr2g0326221 25.943 212 126 5 328 539 44 224 3.05e-20 89.7
Msa0936040 MtrunA17_Chr3g0112651 36.752 117 66 1 110 226 46 154 1.79e-19 87.0
Msa0936040 MtrunA17_Chr4g0060061 34.646 127 68 2 114 240 16 127 4.98e-14 69.3
Msa0936040 MtrunA17_Chr1g0147591 33.333 96 59 1 123 218 9 99 9.86e-13 67.4
Msa0936040 MtrunA17_Chr3g0082621 44.118 68 38 0 24 91 5 72 7.38e-12 61.6
Msa0936040 MtrunA17_Chr7g0261831 26.712 146 92 3 254 384 14 159 8.14e-12 65.1
Msa0936040 MtrunA17_Chr4g0014851 40.506 79 47 0 13 91 38 116 1.69e-11 62.8
Msa0936040 MtrunA17_Chr3g0112661 44.118 68 38 0 24 91 50 117 2.93e-11 61.6
Msa0936040 MtrunA17_Chr1g0147581 30.579 121 78 2 390 510 1 115 9.85e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936040 AT5G14940.1 61.470 558 185 11 1 541 1 545 0.0 651
Msa0936040 AT3G01350.1 60.036 553 201 8 5 541 5 553 0.0 613
Msa0936040 AT1G22540.1 40.840 524 282 6 24 537 47 552 1.77e-130 392
Msa0936040 AT1G72140.1 38.910 532 276 11 24 536 51 552 1.51e-124 377
Msa0936040 AT1G72120.1 39.065 535 295 8 12 534 34 549 8.11e-123 372
Msa0936040 AT1G72125.1 39.212 533 277 10 24 534 46 553 5.02e-122 370
Msa0936040 AT1G72130.1 36.716 542 310 8 2 540 26 537 1.09e-120 366
Msa0936040 AT3G54450.1 35.929 565 306 14 5 541 10 546 8.70e-118 359
Msa0936040 AT1G22550.1 37.288 531 292 9 24 534 47 556 5.97e-114 349
Msa0936040 AT3G53960.1 34.403 561 306 11 12 538 42 574 9.18e-106 330
Msa0936040 AT2G37900.1 33.810 559 312 10 12 542 43 571 2.70e-105 327
Msa0936040 AT1G22570.2 36.047 516 282 12 24 515 10 501 1.47e-103 322
Msa0936040 AT1G22570.1 35.606 528 292 12 12 515 35 538 3.26e-103 322
Msa0936040 AT5G01180.2 32.740 562 323 12 13 542 31 569 3.32e-102 319
Msa0936040 AT5G01180.3 32.740 562 323 12 13 542 31 569 3.32e-102 319
Msa0936040 AT5G01180.1 32.740 562 323 12 13 542 31 569 3.32e-102 319
Msa0936040 AT2G40460.1 33.868 561 323 11 6 542 24 560 8.70e-102 318
Msa0936040 AT3G54140.1 33.214 557 320 10 13 538 30 565 5.01e-101 316
Msa0936040 AT3G54140.2 33.214 557 320 10 13 538 30 565 5.01e-101 316
Msa0936040 AT1G72130.2 36.792 424 242 6 119 540 20 419 4.63e-99 306
Msa0936040 AT1G72130.3 36.792 424 242 6 119 540 20 419 4.63e-99 306
Msa0936040 AT2G37900.2 33.973 521 286 10 50 542 2 492 5.26e-98 306
Msa0936040 AT2G02040.1 32.793 555 331 10 12 540 46 584 4.69e-97 306
Msa0936040 AT1G62200.1 32.916 559 314 8 12 537 57 587 2.71e-94 299
Msa0936040 AT2G02020.1 33.766 539 303 12 12 537 47 544 1.59e-92 293
Msa0936040 AT1G62200.2 32.007 578 323 9 12 537 57 616 1.60e-90 290
Msa0936040 AT1G62200.3 32.007 578 323 9 12 537 71 630 2.20e-90 290
Msa0936040 AT5G46040.1 30.864 567 341 10 4 539 20 566 2.60e-84 273
Msa0936040 AT1G27040.3 31.801 544 329 9 14 534 2 526 5.91e-82 266
Msa0936040 AT1G27040.2 31.949 554 333 10 4 534 22 554 8.58e-82 266
Msa0936040 AT1G27040.1 31.949 554 333 10 4 534 26 558 1.14e-81 266
Msa0936040 AT2G02020.2 32.653 539 288 14 12 537 47 523 1.39e-81 264
Msa0936040 AT5G46050.1 30.125 561 340 12 12 542 32 570 1.19e-80 263
Msa0936040 AT1G69850.1 31.218 583 336 15 4 542 24 585 8.30e-79 259
Msa0936040 AT4G21680.1 31.228 570 324 14 13 540 34 577 6.29e-77 254
Msa0936040 AT1G69870.1 29.529 552 328 9 23 537 67 594 6.51e-77 254
Msa0936040 AT1G32450.1 31.103 553 332 11 15 534 45 581 2.55e-76 253
Msa0936040 AT2G26690.1 30.199 553 337 11 13 539 30 559 6.19e-76 251
Msa0936040 AT2G26690.2 30.387 543 329 11 23 539 7 526 6.40e-76 250
Msa0936040 AT1G68570.2 30.165 547 331 10 24 537 10 538 2.34e-75 249
Msa0936040 AT1G68570.1 30.165 547 331 10 24 537 40 568 3.12e-75 249
Msa0936040 AT2G26690.3 30.410 536 324 11 30 539 2 514 3.09e-74 245
Msa0936040 AT5G62730.2 29.326 549 337 11 16 539 6 528 6.98e-74 244
Msa0936040 AT5G62730.1 29.234 561 344 12 4 539 55 587 1.18e-73 245
Msa0936040 AT5G19640.1 28.571 567 324 13 13 541 65 588 1.85e-72 243
Msa0936040 AT1G12110.1 29.066 578 320 12 13 539 33 571 6.64e-71 238
Msa0936040 AT5G46050.2 31.293 441 263 10 120 542 40 458 1.57e-68 228
Msa0936040 AT1G18880.1 27.949 551 340 11 24 537 36 566 7.33e-68 230
Msa0936040 AT1G59740.1 28.877 561 336 12 18 542 49 582 9.72e-67 227
Msa0936040 AT3G16180.1 29.514 576 336 18 7 538 19 568 5.67e-66 225
Msa0936040 AT3G21670.1 29.197 548 323 12 24 539 46 560 1.81e-65 223
Msa0936040 AT1G52190.1 28.472 576 341 16 4 535 18 566 1.50e-62 216
Msa0936040 AT1G33440.1 27.143 560 338 12 11 534 42 567 7.88e-62 214
Msa0936040 AT3G25260.1 27.810 525 328 11 19 534 33 515 1.21e-60 209
Msa0936040 AT1G27080.1 27.387 555 335 11 23 541 30 552 1.24e-59 207
Msa0936040 AT5G62680.1 25.355 564 348 10 24 541 60 596 1.87e-58 205
Msa0936040 AT1G27080.2 27.407 540 324 11 38 541 3 510 7.40e-57 199
Msa0936040 AT5G13400.1 26.703 558 347 10 24 541 81 616 9.62e-57 201
Msa0936040 AT1G69860.1 27.289 546 344 14 23 541 34 553 4.16e-56 197
Msa0936040 AT3G47960.1 25.405 555 357 11 24 541 78 612 8.08e-56 198
Msa0936040 AT3G45720.1 25.788 539 332 12 34 542 46 546 5.76e-55 194
Msa0936040 AT5G28470.2 28.073 545 343 14 24 539 34 558 3.05e-53 190
Msa0936040 AT3G45660.1 27.103 535 324 14 30 536 44 540 7.78e-53 189
Msa0936040 AT3G45660.3 27.103 535 324 14 30 536 44 540 7.78e-53 189
Msa0936040 AT3G45660.2 27.103 535 324 14 30 536 65 561 1.34e-52 188
Msa0936040 AT5G11570.1 27.106 546 315 12 1 537 7 478 2.22e-52 186
Msa0936040 AT3G45650.1 26.692 532 322 14 34 536 49 541 4.63e-52 186
Msa0936040 AT3G45680.1 24.334 563 349 12 16 541 30 552 3.14e-51 184
Msa0936040 AT5G28470.1 27.890 545 342 15 24 539 34 556 2.37e-50 182
Msa0936040 AT3G25280.1 25.898 529 345 9 16 534 30 521 1.07e-49 179
Msa0936040 AT3G45700.1 24.816 544 345 14 16 535 26 529 1.42e-47 174
Msa0936040 AT3G45650.2 25.806 558 320 16 34 536 49 567 8.46e-47 172
Msa0936040 AT3G45710.1 22.909 550 355 13 16 535 31 541 3.39e-45 167
Msa0936040 AT3G45690.1 21.739 529 310 13 34 535 45 496 1.01e-31 129
Msa0936040 AT2G38100.2 25.741 540 318 19 35 541 2 491 9.80e-31 125
Msa0936040 AT2G38100.1 25.741 540 318 19 35 541 18 507 1.81e-30 125
Msa0936040 AT2G38100.3 25.741 540 318 19 35 541 24 513 2.00e-30 125

Find 97 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCAATGGTGGTATTT+TGG 0.145365 6_3:-6639072 Msa0936040:CDS
CACCTATTGCTGATGCTTAT+TGG 0.205664 6_3:-6641291 Msa0936040:CDS
GACACATTTGGTTGGGTAAT+AGG 0.231752 6_3:-6639000 Msa0936040:CDS
CAAAGGGGTAGCCTCAAATT+TGG 0.254691 6_3:-6641413 Msa0936040:CDS
TGATTAAGCTATTGCCTATA+TGG 0.259511 6_3:-6638249 Msa0936040:CDS
ACCTATTGCTGATGCTTATT+GGG 0.269588 6_3:-6641290 Msa0936040:CDS
CATTTGGTATCTTCTTATAA+TGG 0.282553 6_3:-6642150 Msa0936040:exon
CTTCATTGTCATGCCTTGTT+TGG 0.287571 6_3:+6638174 None:intergenic
TTACCACAGTACATTCTTCT+TGG 0.292712 6_3:-6637857 Msa0936040:CDS
ACACATTTGGTTGGGTAATA+GGG 0.306033 6_3:-6638999 Msa0936040:CDS
TCTCTCTTAAGTTTGGATAT+TGG 0.309812 6_3:-6642193 Msa0936040:five_prime_UTR
TAACGGCATCAATAGTATTA+TGG 0.318413 6_3:+6638090 None:intergenic
AACAACCAGAAAATGCTTAT+TGG 0.321275 6_3:+6637878 None:intergenic
CTGATAACACGACAGGAAAA+AGG 0.335435 6_3:-6638037 Msa0936040:CDS
TCTCTCTATTTAATCTCATT+AGG 0.346870 6_3:-6639207 Msa0936040:CDS
ATCCTTCACTTCTCATTTGT+CGG 0.356684 6_3:+6637918 None:intergenic
GTTTCCACATGATCATGTTT+TGG 0.359186 6_3:+6642237 None:intergenic
CCCATTGTTCTCATATTCTT+CGG 0.361859 6_3:+6637779 None:intergenic
GAGAAAAGATGAGGACATTA+TGG 0.364757 6_3:+6641255 None:intergenic
AAGCATTAAGGTCATAAATA+AGG 0.365962 6_3:-6638314 Msa0936040:CDS
TGCCACCAACAATGGCATTA+TGG 0.367205 6_3:+6641312 None:intergenic
TGTTTGTGCTGGAAGCCTAA+TGG 0.372172 6_3:-6639049 Msa0936040:CDS
CTCTTTGAAACAGTCATTGC+AGG 0.374811 6_3:-6641454 Msa0936040:intron
GCTATATTAATATGATATAA+TGG 0.375823 6_3:+6637451 None:intergenic
CACTTCCATAATGCCATTGT+TGG 0.382096 6_3:-6641317 Msa0936040:CDS
CACGTTTGGATAATTACTAT+TGG 0.386424 6_3:-6637631 Msa0936040:CDS
CGAAAACTGTGAAAGCATTA+AGG 0.391903 6_3:-6638326 Msa0936040:CDS
CAGCAAAGATGGTTAATAGT+TGG 0.392002 6_3:-6641348 Msa0936040:CDS
GTTTGTGCTGGAAGCCTAAT+GGG 0.410630 6_3:-6639048 Msa0936040:CDS
TTAATCATAACCTTTACATT+TGG 0.412053 6_3:+6638265 None:intergenic
TGGTATCTTCTTATAATGGC+TGG 0.414363 6_3:-6642146 Msa0936040:exon
TTTAAGGTACTATACAAGAT+TGG 0.426509 6_3:+6642265 None:intergenic
AATCCATCTCTACAAGCCTT+TGG 0.428240 6_3:-6639171 Msa0936040:CDS
TCTTACATCCAAGACACATT+TGG 0.430307 6_3:-6639012 Msa0936040:CDS
TAGATAAGTTACCAAATTTG+AGG 0.430421 6_3:+6641402 None:intergenic
AGCAAAGATGGTTAATAGTT+GGG 0.441043 6_3:-6641347 Msa0936040:CDS
CATCCAAGACACATTTGGTT+GGG 0.442138 6_3:-6639007 Msa0936040:CDS
ATGAGAAGCATTGTCCATAT+AGG 0.448966 6_3:+6638235 None:intergenic
TGATATGGTCGAGGCACGTT+TGG 0.450686 6_3:-6637645 Msa0936040:CDS
AATTCATGCATTCTCCTCAT+AGG 0.453128 6_3:-6642098 Msa0936040:intron
ATTACTATTGGCTTCTAGCT+TGG 0.455302 6_3:-6637619 Msa0936040:CDS
GAAGTATACACAAGTTCAAA+AGG 0.460982 6_3:-6637689 Msa0936040:CDS
CAATTCATCTGCAGCAAAGA+TGG 0.461506 6_3:-6641359 Msa0936040:CDS
GCCCAATAAGCATCAGCAAT+AGG 0.462037 6_3:+6641289 None:intergenic
ACATGAATGTTACACCCATT+AGG 0.462461 6_3:+6639034 None:intergenic
TAGAGAGGTTTGCATTCAAA+GGG 0.464940 6_3:-6641429 Msa0936040:CDS
CCGAAGAATATGAGAACAAT+GGG 0.466258 6_3:-6637779 Msa0936040:CDS
GCCTTTGGAGCTGATCAACT+TGG 0.472222 6_3:-6639156 Msa0936040:CDS
GCATGAATTGCTGAGCCTCT+TGG 0.476082 6_3:+6642112 None:intergenic
AAGATGGTTAATAGTTGGGT+TGG 0.477748 6_3:-6641343 Msa0936040:CDS
TGGACAATGTTATCGCACTT+TGG 0.479592 6_3:+6638110 None:intergenic
GCTCCAAAGGCTTGTAGAGA+TGG 0.488186 6_3:+6639168 None:intergenic
TTCCATAATGCCATTGTTGG+TGG 0.499004 6_3:-6641314 Msa0936040:CDS
ATCGCACTTTGGAGTGTGGC+CGG 0.502046 6_3:+6638121 None:intergenic
GAAATGAAACGCCTTGCTAT+CGG 0.504880 6_3:-6637941 Msa0936040:CDS
TTACCCAACCAAATGTGTCT+TGG 0.508468 6_3:+6639004 None:intergenic
ATAGAGAGGTTTGCATTCAA+AGG 0.511614 6_3:-6641430 Msa0936040:CDS
CTCTTAAACATGTTCGTGAA+AGG 0.511777 6_3:+6638865 None:intergenic
ACATCCAAGACACATTTGGT+TGG 0.514558 6_3:-6639008 Msa0936040:CDS
ACCAAGTTGATCAGCTCCAA+AGG 0.526037 6_3:+6639155 None:intergenic
AACTTATCTAACTGATGTTG+TGG 0.535055 6_3:-6641389 Msa0936040:CDS
GTGTCTGCTACCAAATGTAA+AGG 0.535911 6_3:-6638275 Msa0936040:CDS
GTGATGCAAAGGATGGGAAT+CGG 0.543695 6_3:-6638007 Msa0936040:CDS
CGCTCAGCTGATAACACGAC+AGG 0.545338 6_3:-6638044 Msa0936040:CDS
TATAAACGTGATGCAAAGGA+TGG 0.549790 6_3:-6638014 Msa0936040:CDS
CAACAGCACTAGCAAGATCA+TGG 0.549961 6_3:-6639272 Msa0936040:CDS
TCATTTGTCGGCCGATAGCA+AGG 0.551787 6_3:+6637930 None:intergenic
GGCCGACAAATGAGAAGTGA+AGG 0.560082 6_3:-6637920 Msa0936040:CDS
TATTTAATCTCATTAGGCCA+AGG 0.562331 6_3:-6639201 Msa0936040:CDS
CGTGTTATCAGCTGAGCGAA+CGG 0.563262 6_3:+6638049 None:intergenic
GTTCAAAAGGAACTCCAAGT+TGG 0.566715 6_3:-6637676 Msa0936040:CDS
TGTAACAGAGTTAGTACTAT+CGG 0.567272 6_3:-6642315 Msa0936040:five_prime_UTR
TTCAAATTTCAAGATACCAC+CGG 0.568640 6_3:-6638140 Msa0936040:CDS
AAGGTATAAACGTGATGCAA+AGG 0.571082 6_3:-6638018 Msa0936040:CDS
ATGACAATGAAGAGAAACAT+AGG 0.572423 6_3:-6638163 Msa0936040:CDS
TGTTATCGCACTTTGGAGTG+TGG 0.573845 6_3:+6638117 None:intergenic
ACACATAGAGTTTACCTATG+AGG 0.578571 6_3:+6642084 None:intergenic
AAAAGATGAGGACATTATGG+TGG 0.581494 6_3:+6641258 None:intergenic
GAAAGAAGCATCGAAATCGC+AGG 0.584602 6_3:+6638967 None:intergenic
TCCGAAGAATATGAGAACAA+TGG 0.585411 6_3:-6637780 Msa0936040:CDS
GTGTCATCTGTGTTACTACA+AGG 0.595088 6_3:+6639117 None:intergenic
TATCTTCTTATAATGGCTGG+TGG 0.599636 6_3:-6642143 Msa0936040:exon
GCAAAGGATGGGAATCGGAA+TGG 0.605289 6_3:-6638002 Msa0936040:CDS
CAGTCATTGCAGGTATAGAG+AGG 0.605527 6_3:-6641444 Msa0936040:CDS
AAAACCAAAACATGATCATG+TGG 0.607034 6_3:-6642241 Msa0936040:five_prime_UTR
ATATCATCAGAAAACCAACT+TGG 0.615024 6_3:+6637662 None:intergenic
ATAAACGTGATGCAAAGGAT+GGG 0.622044 6_3:-6638013 Msa0936040:CDS
GAGATGGATTATATCCACCT+TGG 0.625994 6_3:+6639184 None:intergenic
GCAATAGGTGCCACCAACAA+TGG 0.628514 6_3:+6641304 None:intergenic
TTAATCTCATTAGGCCAAGG+TGG 0.638847 6_3:-6639198 Msa0936040:CDS
GCACTTTGGAGTGTGGCCGG+TGG 0.651354 6_3:+6638124 None:intergenic
TTGGTAGAGTAATTTCACAA+TGG 0.651611 6_3:+6638815 None:intergenic
CATAACATAGAGAAAAGATG+AGG 0.677023 6_3:+6641246 None:intergenic
AATCATAGCGATGATTATCG+CGG 0.703876 6_3:-6637972 Msa0936040:CDS
AGAGAGGTTTGCATTCAAAG+GGG 0.708268 6_3:-6641428 Msa0936040:CDS
CTGGTGGACAGAAAACCAAG+AGG 0.752478 6_3:-6642127 Msa0936040:CDS
ATACCAAGAAGAATGTACTG+TGG 0.754580 6_3:+6637854 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAACAAAAAAAGAAA+TGG + chr6_3:6639130-6639149 None:intergenic 10.0%
!! ATAACATAAAAAATAATAAG+TGG + chr6_3:6639723-6639742 None:intergenic 10.0%
!! AGAAAATTACATATAATCAA+TGG + chr6_3:6637901-6637920 None:intergenic 15.0%
!! TAGAATATCATAAATCAAAA+GGG + chr6_3:6638246-6638265 None:intergenic 15.0%
!! ATAGAATATCATAAATCAAA+AGG + chr6_3:6638247-6638266 None:intergenic 15.0%
!! TGATATTTCATACAAATATT+TGG - chr6_3:6638752-6638771 Msa0936040:intron 15.0%
!! CTATACTATAACAAAATTAA+TGG + chr6_3:6639074-6639093 None:intergenic 15.0%
!!! TTCCTTTTTAATCAAAATTT+AGG + chr6_3:6639431-6639450 None:intergenic 15.0%
!!! ACTTATGTTTTGTATTAATT+TGG + chr6_3:6639582-6639601 None:intergenic 15.0%
!!! TGAAATTTTTATAATCATAG+AGG + chr6_3:6639671-6639690 None:intergenic 15.0%
!! ACATAATTTAGTGTAATTAT+AGG - chr6_3:6640100-6640119 Msa0936040:intron 15.0%
!! GCTATATTAATATGATATAA+TGG + chr6_3:6642319-6642338 None:intergenic 15.0%
!!! TCATGTTTTGGTTTTTTTTA+AGG + chr6_3:6637521-6637540 None:intergenic 20.0%
!!! TTAATAGGATTTATTTTCCA+CGG - chr6_3:6637946-6637965 Msa0936040:CDS 20.0%
!! TATTGTTTGAATTATGACTA+TGG + chr6_3:6638205-6638224 None:intergenic 20.0%
!! TGTAAATATGTAAATGCAAA+AGG + chr6_3:6638581-6638600 None:intergenic 20.0%
!! TAGTATTTGTATAAAGTAGT+AGG + chr6_3:6639031-6639050 None:intergenic 20.0%
!! AAAAAGAAATGGAATAATCT+TGG + chr6_3:6639119-6639138 None:intergenic 20.0%
!! TACTATATAGTATTAGCATT+AGG - chr6_3:6639242-6639261 Msa0936040:CDS 20.0%
!!! AATTGTTCATTGATTGATAA+GGG + chr6_3:6639364-6639383 None:intergenic 20.0%
!!! AAATTGTTCATTGATTGATA+AGG + chr6_3:6639365-6639384 None:intergenic 20.0%
!!! CTTTTTAATCAAAATTTAGG+TGG + chr6_3:6639428-6639447 None:intergenic 20.0%
!!! CACCTAAATTTTGATTAAAA+AGG - chr6_3:6639426-6639445 Msa0936040:intron 20.0%
!! AACAGTATAGTTAATAGATA+AGG - chr6_3:6639637-6639656 Msa0936040:intron 20.0%
!! ACTCAAAATTCTCTTTAATA+TGG + chr6_3:6639892-6639911 None:intergenic 20.0%
!!! TATTAAAGAGAATTTTGAGT+TGG - chr6_3:6639892-6639911 Msa0936040:intron 20.0%
!! CATCTTATATGAATATAGTT+TGG + chr6_3:6640230-6640249 None:intergenic 20.0%
!!! TTTTTGAGAATGTATAGAAA+CGG + chr6_3:6640320-6640339 None:intergenic 20.0%
!!! ATTTATTTTTCTTGTGAAAC+AGG - chr6_3:6641395-6641414 Msa0936040:CDS 20.0%
!! TTAATCATAACCTTTACATT+TGG + chr6_3:6641505-6641524 None:intergenic 20.0%
!!! TAATTTTATCACAAAGTTTG+TGG - chr6_3:6642284-6642303 Msa0936040:five_prime_UTR 20.0%
!! TTTAAGGTACTATACAAGAT+TGG + chr6_3:6637505-6637524 None:intergenic 25.0%
!!! TTTTGATTCTCTCTTAAGTT+TGG - chr6_3:6637567-6637586 Msa0936040:CDS 25.0%
!!! TTCATTTTTCTAGAAGCATT+TGG - chr6_3:6637601-6637620 Msa0936040:CDS 25.0%
! CATTTGGTATCTTCTTATAA+TGG - chr6_3:6637617-6637636 Msa0936040:CDS 25.0%
!!! TTTCAAGTTTCAACCTTATT+AGG - chr6_3:6637755-6637774 Msa0936040:CDS 25.0%
!! TTCAAGTTTCAACCTTATTA+GGG - chr6_3:6637756-6637775 Msa0936040:CDS 25.0%
! GTTGAATTAAAGCATATGTT+TGG - chr6_3:6637811-6637830 Msa0936040:CDS 25.0%
! GTTAGAGAAAATATCACAAA+TGG + chr6_3:6637847-6637866 None:intergenic 25.0%
! ACATATAATCAATGGAATTG+AGG + chr6_3:6637893-6637912 None:intergenic 25.0%
! CTATAGTTAAATTCAACTAC+AGG + chr6_3:6638073-6638092 None:intergenic 25.0%
! CTGTAGTTGAATTTAACTAT+AGG - chr6_3:6638071-6638090 Msa0936040:CDS 25.0%
!!! TCTTCTAGAGTTTTAAATCA+TGG + chr6_3:6638179-6638198 None:intergenic 25.0%
! TAGATAAGTTACCAAATTTG+AGG + chr6_3:6638368-6638387 None:intergenic 25.0%
!! GAAGTATATAATTTTGTGGA+AGG + chr6_3:6638555-6638574 None:intergenic 25.0%
!!! GAAGGAAGTATATAATTTTG+TGG + chr6_3:6638559-6638578 None:intergenic 25.0%
! AATATGTAAATGCAAAAGGA+AGG + chr6_3:6638577-6638596 None:intergenic 25.0%
! ACAATCAAGTAATCAACTAT+AGG + chr6_3:6638817-6638836 None:intergenic 25.0%
! AATACTATAGTATTAGCGTT+AGG - chr6_3:6639044-6639063 Msa0936040:CDS 25.0%
! CATATATGCTTAAATATGAG+TGG + chr6_3:6639303-6639322 None:intergenic 25.0%
!! ATTTTCTTCTGTAGATTACA+TGG + chr6_3:6639468-6639487 None:intergenic 25.0%
! CTTAGACATCGATAATAAAT+TGG + chr6_3:6639502-6639521 None:intergenic 25.0%
!! TATTCTATCCTTTTAGCATA+TGG + chr6_3:6639757-6639776 None:intergenic 25.0%
! TGGTTTCATGTCTATATAAT+TGG + chr6_3:6639820-6639839 None:intergenic 25.0%
! ATATATTCACCCAAACAAAT+AGG - chr6_3:6639861-6639880 Msa0936040:intron 25.0%
!!! ATGGTTTTACCTATTTGTTT+GGG + chr6_3:6639873-6639892 None:intergenic 25.0%
!!! TATGGTTTTACCTATTTGTT+TGG + chr6_3:6639874-6639893 None:intergenic 25.0%
! GATAAGGTTAAAACTACTTA+TGG - chr6_3:6640282-6640301 Msa0936040:intron 25.0%
! GTTTCTATACATTCTCAAAA+AGG - chr6_3:6640319-6640338 Msa0936040:intron 25.0%
! TCTCTCTATTTAATCTCATT+AGG - chr6_3:6640560-6640579 Msa0936040:intron 25.0%
!!! AAAAAGCACTTTTCTTTCAA+TGG - chr6_3:6640684-6640703 Msa0936040:intron 25.0%
! AATTAGGTTAAACAATATGG+CGG + chr6_3:6641186-6641205 None:intergenic 25.0%
! CAGAATTAGGTTAAACAATA+TGG + chr6_3:6641189-6641208 None:intergenic 25.0%
! AAGCATTAAGGTCATAAATA+AGG - chr6_3:6641453-6641472 Msa0936040:intron 25.0%
! ATAAAAACTCTGTCGTATAA+CGG + chr6_3:6641697-6641716 None:intergenic 25.0%
!! TATATCAGATATTTTCACAG+TGG - chr6_3:6641933-6641952 Msa0936040:intron 25.0%
!!! GGTATGCAAGAATTTTTTTA+CGG - chr6_3:6641958-6641977 Msa0936040:intron 25.0%
TGTAACAGAGTTAGTACTAT+CGG - chr6_3:6637452-6637471 Msa0936040:three_prime_UTR 30.0%
AAAACCAAAACATGATCATG+TGG - chr6_3:6637526-6637545 Msa0936040:exon 30.0%
TCTCTCTTAAGTTTGGATAT+TGG - chr6_3:6637574-6637593 Msa0936040:CDS 30.0%
AGCAAAATTCATCCCTAATA+AGG + chr6_3:6637771-6637790 None:intergenic 30.0%
! AATTTTCTGCTGAAAAACCT+AGG - chr6_3:6637913-6637932 Msa0936040:CDS 30.0%
!! CTATTAAAGACTAGTTTCCT+AGG + chr6_3:6637933-6637952 None:intergenic 30.0%
!! CTAGGAAACTAGTCTTTAAT+AGG - chr6_3:6637931-6637950 Msa0936040:CDS 30.0%
TAATGTTGCAAAGGAGATTA+CGG + chr6_3:6637972-6637991 None:intergenic 30.0%
TAATCTCCTTTGCAACATTA+TGG - chr6_3:6637972-6637991 Msa0936040:CDS 30.0%
AATCTCCTTTGCAACATTAT+GGG - chr6_3:6637973-6637992 Msa0936040:CDS 30.0%
AATTCAAATCCATTCAACTG+GGG + chr6_3:6638023-6638042 None:intergenic 30.0%
CAATTCAAATCCATTCAACT+GGG + chr6_3:6638024-6638043 None:intergenic 30.0%
AGATTGATGCAAGTTCAATA+GGG + chr6_3:6638107-6638126 None:intergenic 30.0%
AACTTATCTAACTGATGTTG+TGG - chr6_3:6638378-6638397 Msa0936040:intron 30.0%
AGCAAAGATGGTTAATAGTT+GGG - chr6_3:6638420-6638439 Msa0936040:intron 30.0%
CATAACATAGAGAAAAGATG+AGG + chr6_3:6638524-6638543 None:intergenic 30.0%
! CTCATCTTTTCTCTATGTTA+TGG - chr6_3:6638522-6638541 Msa0936040:intron 30.0%
GATTTGAACTCAGTCATTTA+AGG - chr6_3:6638701-6638720 Msa0936040:intron 30.0%
TGTATGAAATATCAGTTCAG+TGG + chr6_3:6638746-6638765 None:intergenic 30.0%
TATGCAATGAATAATACACG+TGG - chr6_3:6638989-6639008 Msa0936040:CDS 30.0%
TTTGTATAAAGTAGTAGGTC+AGG + chr6_3:6639026-6639045 None:intergenic 30.0%
CAAAATTTAGGTGGATATTC+TGG + chr6_3:6639419-6639438 None:intergenic 30.0%
ATTAAGCACCATATGCTAAA+AGG - chr6_3:6639746-6639765 Msa0936040:intron 30.0%
! TTCATTCTAGTAAGGGATTT+TGG + chr6_3:6639784-6639803 None:intergenic 30.0%
ACTTCACTTCATTCTAGTAA+GGG + chr6_3:6639791-6639810 None:intergenic 30.0%
AACTTCACTTCATTCTAGTA+AGG + chr6_3:6639792-6639811 None:intergenic 30.0%
AGATCATGACATCATAATCA+TGG + chr6_3:6639840-6639859 None:intergenic 30.0%
CCTCAAATTATTATCTGCAT+CGG + chr6_3:6640075-6640094 None:intergenic 30.0%
! TGTAATTATAGGTGTCATGT+CGG - chr6_3:6640111-6640130 Msa0936040:intron 30.0%
TTATCATAAGCTAATCCATG+AGG - chr6_3:6640250-6640269 Msa0936040:intron 30.0%
TATCATAAGCTAATCCATGA+GGG - chr6_3:6640251-6640270 Msa0936040:intron 30.0%
CAGTAACTTTCTGTTTGATT+TGG + chr6_3:6640390-6640409 None:intergenic 30.0%
! TTCTTGTGTTTTCTTCCTAT+AGG - chr6_3:6640454-6640473 Msa0936040:intron 30.0%
! TCTTGTGTTTTCTTCCTATA+GGG - chr6_3:6640455-6640474 Msa0936040:intron 30.0%
TATTTAATCTCATTAGGCCA+AGG - chr6_3:6640566-6640585 Msa0936040:intron 30.0%
! TTCTTTCAATGGTGGTATTT+TGG - chr6_3:6640695-6640714 Msa0936040:intron 30.0%
! TCTATCTTGATTTTCTCTAG+TGG - chr6_3:6640821-6640840 Msa0936040:intron 30.0%
TTGGTAGAGTAATTTCACAA+TGG + chr6_3:6640955-6640974 None:intergenic 30.0%
! ACATTTTCAGACTTGTCATT+TGG + chr6_3:6640974-6640993 None:intergenic 30.0%
!!! ATCTTGTCGTTTTCAGAATT+AGG + chr6_3:6641202-6641221 None:intergenic 30.0%
ACACATATGAGATGAGAAAT+CGG - chr6_3:6641223-6641242 Msa0936040:intron 30.0%
!!! TTAACAAGACCTGTGTTTTT+TGG - chr6_3:6641292-6641311 Msa0936040:CDS 30.0%
ATTCTCTTACCAAAAAACAC+AGG + chr6_3:6641304-6641323 None:intergenic 30.0%
GTAAGAGAATGTGTGAAAAA+TGG - chr6_3:6641314-6641333 Msa0936040:CDS 30.0%
TGATTAAGCTATTGCCTATA+TGG - chr6_3:6641518-6641537 Msa0936040:intron 30.0%
ATGACAATGAAGAGAAACAT+AGG - chr6_3:6641604-6641623 Msa0936040:intron 30.0%
TTCAAATTTCAAGATACCAC+CGG - chr6_3:6641627-6641646 Msa0936040:intron 30.0%
TAACGGCATCAATAGTATTA+TGG + chr6_3:6641680-6641699 None:intergenic 30.0%
! TAGTACCAATAAGCATTTTC+TGG - chr6_3:6641884-6641903 Msa0936040:intron 30.0%
AACAACCAGAAAATGCTTAT+TGG + chr6_3:6641892-6641911 None:intergenic 30.0%
! GCATTGTATACAAGTGTTTT+CGG - chr6_3:6642015-6642034 Msa0936040:intron 30.0%
GAAGTATACACAAGTTCAAA+AGG - chr6_3:6642078-6642097 Msa0936040:intron 30.0%
ATATCATCAGAAAACCAACT+TGG + chr6_3:6642108-6642127 None:intergenic 30.0%
!!! AAGTTGGTTTTCTGATGATA+TGG - chr6_3:6642107-6642126 Msa0936040:CDS 30.0%
CACGTTTGGATAATTACTAT+TGG - chr6_3:6642136-6642155 Msa0936040:exon 30.0%
! GTTTCCACATGATCATGTTT+TGG + chr6_3:6637533-6637552 None:intergenic 35.0%
TGGTATCTTCTTATAATGGC+TGG - chr6_3:6637621-6637640 Msa0936040:CDS 35.0%
TATCTTCTTATAATGGCTGG+TGG - chr6_3:6637624-6637643 Msa0936040:CDS 35.0%
AATTCATGCATTCTCCTCAT+AGG - chr6_3:6637669-6637688 Msa0936040:CDS 35.0%
ACACATAGAGTTTACCTATG+AGG + chr6_3:6637686-6637705 None:intergenic 35.0%
TTGCTCATGATTGATCACAA+TGG - chr6_3:6637786-6637805 Msa0936040:CDS 35.0%
AATGGAATTGAGGCTTAAGA+AGG + chr6_3:6637883-6637902 None:intergenic 35.0%
CAAAACCCATAATGTTGCAA+AGG + chr6_3:6637981-6638000 None:intergenic 35.0%
GCAATTCAAATCCATTCAAC+TGG + chr6_3:6638025-6638044 None:intergenic 35.0%
TTGTAGTTGAATTCAACTGC+AGG + chr6_3:6638047-6638066 None:intergenic 35.0%
ATGCAAGTTCAATAGGGATT+AGG + chr6_3:6638101-6638120 None:intergenic 35.0%
GAGATTGATGCAAGTTCAAT+AGG + chr6_3:6638108-6638127 None:intergenic 35.0%
CTAGATATTGAGTAGAATCG+CGG + chr6_3:6638137-6638156 None:intergenic 35.0%
ATAGAGAGGTTTGCATTCAA+AGG - chr6_3:6638337-6638356 Msa0936040:CDS 35.0%
TAGAGAGGTTTGCATTCAAA+GGG - chr6_3:6638338-6638357 Msa0936040:CDS 35.0%
CAGCAAAGATGGTTAATAGT+TGG - chr6_3:6638419-6638438 Msa0936040:intron 35.0%
AAGATGGTTAATAGTTGGGT+TGG - chr6_3:6638424-6638443 Msa0936040:intron 35.0%
ACCTATTGCTGATGCTTATT+GGG - chr6_3:6638477-6638496 Msa0936040:intron 35.0%
AAAAGATGAGGACATTATGG+TGG + chr6_3:6638512-6638531 None:intergenic 35.0%
GAGAAAAGATGAGGACATTA+TGG + chr6_3:6638515-6638534 None:intergenic 35.0%
GAGTTCAAATCAGTCAAAGA+CGG + chr6_3:6638692-6638711 None:intergenic 35.0%
TTGATTGTGAAGTAAGACAG+TGG - chr6_3:6638829-6638848 Msa0936040:CDS 35.0%
TCTGCAATGACTAATATACG+TGG - chr6_3:6639183-6639202 Msa0936040:CDS 35.0%
CAGACTCCAACAAAACTTAA+CGG + chr6_3:6639272-6639291 None:intergenic 35.0%
!! CTACAGTTTTTGAAGAGTTC+AGG - chr6_3:6639336-6639355 Msa0936040:intron 35.0%
GTGAAATGTAGAATCTGACT+TGG + chr6_3:6639397-6639416 None:intergenic 35.0%
!! CTTTTTGATGTAGCTTGCAT+AGG + chr6_3:6639950-6639969 None:intergenic 35.0%
CCGATGCAGATAATAATTTG+AGG - chr6_3:6640072-6640091 Msa0936040:intron 35.0%
! AAGCACTTTTCTTTCAATGG+TGG - chr6_3:6640687-6640706 Msa0936040:intron 35.0%
ACATGAATGTTACACCCATT+AGG + chr6_3:6640736-6640755 None:intergenic 35.0%
TCTTACATCCAAGACACATT+TGG - chr6_3:6640755-6640774 Msa0936040:intron 35.0%
ACACATTTGGTTGGGTAATA+GGG - chr6_3:6640768-6640787 Msa0936040:intron 35.0%
CTCTTAAACATGTTCGTGAA+AGG + chr6_3:6640905-6640924 None:intergenic 35.0%
AAAAATGTGCGAGAGAATAG+AGG - chr6_3:6641066-6641085 Msa0936040:intron 35.0%
GTCATTGTAAGTCTCATAAC+GGG + chr6_3:6641349-6641368 None:intergenic 35.0%
GGTCATTGTAAGTCTCATAA+CGG + chr6_3:6641350-6641369 None:intergenic 35.0%
TTCTGTAAGCACTTCACTAT+AGG + chr6_3:6641371-6641390 None:intergenic 35.0%
!! CGAAAACTGTGAAAGCATTA+AGG - chr6_3:6641441-6641460 Msa0936040:CDS 35.0%
!! ATGAGAAGCATTGTCCATAT+AGG + chr6_3:6641535-6641554 None:intergenic 35.0%
TGAAAAAAGTTGCAGGTTGT+TGG + chr6_3:6641573-6641592 None:intergenic 35.0%
! TGTTTGGTGAAAAAAGTTGC+AGG + chr6_3:6641580-6641599 None:intergenic 35.0%
!!! GCAACTTTTTTCACCAAACA+AGG - chr6_3:6641580-6641599 Msa0936040:intron 35.0%
AAGGTATAAACGTGATGCAA+AGG - chr6_3:6641749-6641768 Msa0936040:intron 35.0%
TATAAACGTGATGCAAAGGA+TGG - chr6_3:6641753-6641772 Msa0936040:intron 35.0%
ATAAACGTGATGCAAAGGAT+GGG - chr6_3:6641754-6641773 Msa0936040:intron 35.0%
AATCATAGCGATGATTATCG+CGG - chr6_3:6641795-6641814 Msa0936040:intron 35.0%
ATCCTTCACTTCTCATTTGT+CGG + chr6_3:6641852-6641871 None:intergenic 35.0%
TTACCACAGTACATTCTTCT+TGG - chr6_3:6641910-6641929 Msa0936040:intron 35.0%
ATACCAAGAAGAATGTACTG+TGG + chr6_3:6641916-6641935 None:intergenic 35.0%
! TCAGATATTTTCACAGTGGT+TGG - chr6_3:6641937-6641956 Msa0936040:intron 35.0%
TCCGAAGAATATGAGAACAA+TGG - chr6_3:6641987-6642006 Msa0936040:intron 35.0%
CCCATTGTTCTCATATTCTT+CGG + chr6_3:6641991-6642010 None:intergenic 35.0%
CCGAAGAATATGAGAACAAT+GGG - chr6_3:6641988-6642007 Msa0936040:intron 35.0%
! TATACAAGTGTTTTCGGAGT+TGG - chr6_3:6642021-6642040 Msa0936040:intron 35.0%
!! ATTACTATTGGCTTCTAGCT+TGG - chr6_3:6642148-6642167 Msa0936040:exon 35.0%
!! CTCTTTGAAACAGTCATTGC+AGG - chr6_3:6638313-6638332 Msa0936040:CDS 40.0%
AGAGAGGTTTGCATTCAAAG+GGG - chr6_3:6638339-6638358 Msa0936040:CDS 40.0%
CAATTCATCTGCAGCAAAGA+TGG - chr6_3:6638408-6638427 Msa0936040:intron 40.0%
CACTTCCATAATGCCATTGT+TGG - chr6_3:6638450-6638469 Msa0936040:intron 40.0%
TTCCATAATGCCATTGTTGG+TGG - chr6_3:6638453-6638472 Msa0936040:intron 40.0%
CACCTATTGCTGATGCTTAT+TGG - chr6_3:6638476-6638495 Msa0936040:intron 40.0%
CAATGAATAATACACGTGGC+TGG - chr6_3:6638993-6639012 Msa0936040:CDS 40.0%
CAATGACTAATATACGTGGC+TGG - chr6_3:6639187-6639206 Msa0936040:CDS 40.0%
!! GGAGATCCGTTAAGTTTTGT+TGG - chr6_3:6639263-6639282 Msa0936040:CDS 40.0%
ATGAGGATACAACACTGACA+CGG + chr6_3:6639528-6639547 None:intergenic 40.0%
ATGAAGCACAGACTTAGATG+AGG + chr6_3:6639545-6639564 None:intergenic 40.0%
! TTGATGTAGCTTGCATAGGA+AGG + chr6_3:6639946-6639965 None:intergenic 40.0%
!! ATGAAGCACTGACATAGACA+CGG - chr6_3:6640028-6640047 Msa0936040:intron 40.0%
CTTATCTACATAAGCCCTCA+TGG + chr6_3:6640268-6640287 None:intergenic 40.0%
CATGAGGGCTTATGTAGATA+AGG - chr6_3:6640266-6640285 Msa0936040:intron 40.0%
TTAATCTCATTAGGCCAAGG+TGG - chr6_3:6640569-6640588 Msa0936040:intron 40.0%
!! GAGATGGATTATATCCACCT+TGG + chr6_3:6640586-6640605 None:intergenic 40.0%
AATCCATCTCTACAAGCCTT+TGG - chr6_3:6640596-6640615 Msa0936040:intron 40.0%
! GTGTCATCTGTGTTACTACA+AGG + chr6_3:6640653-6640672 None:intergenic 40.0%
!!! TGGTATTTTGGTGTTTGTGC+TGG - chr6_3:6640707-6640726 Msa0936040:intron 40.0%
ACATCCAAGACACATTTGGT+TGG - chr6_3:6640759-6640778 Msa0936040:intron 40.0%
CATCCAAGACACATTTGGTT+GGG - chr6_3:6640760-6640779 Msa0936040:intron 40.0%
TTACCCAACCAAATGTGTCT+TGG + chr6_3:6640766-6640785 None:intergenic 40.0%
GACACATTTGGTTGGGTAAT+AGG - chr6_3:6640767-6640786 Msa0936040:intron 40.0%
CCAACATACGAAAATCTCAG+AGG + chr6_3:6641107-6641126 None:intergenic 40.0%
!!! CCTCTGAGATTTTCGTATGT+TGG - chr6_3:6641104-6641123 Msa0936040:intron 40.0%
GATGAGAAATCGGTATGCAT+AGG - chr6_3:6641233-6641252 Msa0936040:intron 40.0%
GTGTCTGCTACCAAATGTAA+AGG - chr6_3:6641492-6641511 Msa0936040:intron 40.0%
! CTTCATTGTCATGCCTTGTT+TGG + chr6_3:6641596-6641615 None:intergenic 40.0%
TGGACAATGTTATCGCACTT+TGG + chr6_3:6641660-6641679 None:intergenic 40.0%
CTGATAACACGACAGGAAAA+AGG - chr6_3:6641730-6641749 Msa0936040:intron 40.0%
! GAAATGAAACGCCTTGCTAT+CGG - chr6_3:6641826-6641845 Msa0936040:intron 40.0%
GTTCAAAAGGAACTCCAAGT+TGG - chr6_3:6642091-6642110 Msa0936040:intron 40.0%
! GTTTTCTGATGATATGGTCG+AGG - chr6_3:6642113-6642132 Msa0936040:CDS 40.0%
ATCCTCATACCCCAGTTGAA+TGG - chr6_3:6638011-6638030 Msa0936040:CDS 45.0%
ATCCATTCAACTGGGGTATG+AGG + chr6_3:6638016-6638035 None:intergenic 45.0%
CAGTCATTGCAGGTATAGAG+AGG - chr6_3:6638323-6638342 Msa0936040:CDS 45.0%
CAAAGGGGTAGCCTCAAATT+TGG - chr6_3:6638354-6638373 Msa0936040:intron 45.0%
TGCCACCAACAATGGCATTA+TGG + chr6_3:6638458-6638477 None:intergenic 45.0%
GCCCAATAAGCATCAGCAAT+AGG + chr6_3:6638481-6638500 None:intergenic 45.0%
! TATAGGTGTCATGTCGGTGT+CGG - chr6_3:6640117-6640136 Msa0936040:intron 45.0%
TCAATGCTGCAAGTCCCTAT+AGG + chr6_3:6640472-6640491 None:intergenic 45.0%
CAACAGCACTAGCAAGATCA+TGG - chr6_3:6640495-6640514 Msa0936040:intron 45.0%
!! ACCAAGTTGATCAGCTCCAA+AGG + chr6_3:6640615-6640634 None:intergenic 45.0%
TGTTTGTGCTGGAAGCCTAA+TGG - chr6_3:6640718-6640737 Msa0936040:intron 45.0%
GTTTGTGCTGGAAGCCTAAT+GGG - chr6_3:6640719-6640738 Msa0936040:intron 45.0%
!! GAAAGAAGCATCGAAATCGC+AGG + chr6_3:6640803-6640822 None:intergenic 45.0%
CGAGAGAATAGAGGAATCGA+GGG - chr6_3:6641075-6641094 Msa0936040:intron 45.0%
GTTGGATGACGATTACCTCT+AGG - chr6_3:6641122-6641141 Msa0936040:intron 45.0%
CATAGGATAAGTCACCAACC+CGG - chr6_3:6641250-6641269 Msa0936040:CDS 45.0%
TTACTGACGTGACAGTAACC+GGG + chr6_3:6641271-6641290 None:intergenic 45.0%
GTTACTGACGTGACAGTAAC+CGG + chr6_3:6641272-6641291 None:intergenic 45.0%
! TCACAGTTTTCGCGACAAAG+TGG + chr6_3:6641433-6641452 None:intergenic 45.0%
!! TGTTATCGCACTTTGGAGTG+TGG + chr6_3:6641653-6641672 None:intergenic 45.0%
GTGATGCAAAGGATGGGAAT+CGG - chr6_3:6641760-6641779 Msa0936040:intron 45.0%
! CTGGTGGACAGAAAACCAAG+AGG - chr6_3:6637640-6637659 Msa0936040:CDS 50.0%
GCATGAATTGCTGAGCCTCT+TGG + chr6_3:6637658-6637677 None:intergenic 50.0%
! GCAATAGGTGCCACCAACAA+TGG + chr6_3:6638466-6638485 None:intergenic 50.0%
ACTGACATAGACACGGACAC+CGG - chr6_3:6640035-6640054 Msa0936040:intron 50.0%
! GATTAGGTGTGTCTCGGTGT+CGG + chr6_3:6640157-6640176 None:intergenic 50.0%
! TCCTCGGATTAGGTGTGTCT+CGG + chr6_3:6640163-6640182 None:intergenic 50.0%
!! TGTGAAGCACTGACACTCCT+CGG + chr6_3:6640179-6640198 None:intergenic 50.0%
GCTCCAAAGGCTTGTAGAGA+TGG + chr6_3:6640602-6640621 None:intergenic 50.0%
!! GCCTTTGGAGCTGATCAACT+TGG - chr6_3:6640611-6640630 Msa0936040:intron 50.0%
GCGAGAGAATAGAGGAATCG+AGG - chr6_3:6641074-6641093 Msa0936040:intron 50.0%
GAATAGGCTGTGTAGCCTAG+AGG + chr6_3:6641140-6641159 None:intergenic 50.0%
GAGCGAGAGAGAAGAGGAAT+AGG + chr6_3:6641156-6641175 None:intergenic 50.0%
AACAGTGAGCGAGAGAGAAG+AGG + chr6_3:6641162-6641181 None:intergenic 50.0%
CGTGTTATCAGCTGAGCGAA+CGG + chr6_3:6641721-6641740 None:intergenic 50.0%
GCAAAGGATGGGAATCGGAA+TGG - chr6_3:6641765-6641784 Msa0936040:intron 50.0%
TCATTTGTCGGCCGATAGCA+AGG + chr6_3:6641840-6641859 None:intergenic 50.0%
GGCCGACAAATGAGAAGTGA+AGG - chr6_3:6641847-6641866 Msa0936040:intron 50.0%
TGATATGGTCGAGGCACGTT+TGG - chr6_3:6642122-6642141 Msa0936040:CDS 50.0%
TGCAAAGGAGATTACGGCCG+TGG + chr6_3:6637966-6637985 None:intergenic 55.0%
! ATCGGTGTCCATGTCGTGTC+CGG + chr6_3:6640057-6640076 None:intergenic 55.0%
ACCGAGACACACCTAATCCG+AGG - chr6_3:6640159-6640178 Msa0936040:intron 55.0%
! GCACTGACACTCCTCGGATT+AGG + chr6_3:6640173-6640192 None:intergenic 55.0%
TGACGTGACAGTAACCGGGT+TGG + chr6_3:6641267-6641286 None:intergenic 55.0%
!! ATCGCACTTTGGAGTGTGGC+CGG + chr6_3:6641649-6641668 None:intergenic 55.0%
CGCTCAGCTGATAACACGAC+AGG - chr6_3:6641723-6641742 Msa0936040:intron 55.0%
CACGGACACCGGACACGACA+TGG - chr6_3:6640046-6640065 Msa0936040:intron 65.0%
!! TCTCGGTGTCGGACACGCGT+CGG + chr6_3:6640146-6640165 None:intergenic 65.0%
!! GCACTTTGGAGTGTGGCCGG+TGG + chr6_3:6641646-6641665 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 6637436 6642353 6637436 ID=Msa0936040;Name=Msa0936040
chr6_3 mRNA 6637436 6642353 6637436 ID=Msa0936040-mRNA-1;Parent=Msa0936040;Name=Msa0936040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=200|1|1|1|1|1|4|108|542
chr6_3 exon 6637436 6638372 6637436 ID=Msa0936040-mRNA-1:exon:2123;Parent=Msa0936040-mRNA-1
chr6_3 exon 6638787 6639313 6638787 ID=Msa0936040-mRNA-1:exon:2122;Parent=Msa0936040-mRNA-1
chr6_3 exon 6641246 6641463 6641246 ID=Msa0936040-mRNA-1:exon:2121;Parent=Msa0936040-mRNA-1
chr6_3 exon 6642099 6642353 6642099 ID=Msa0936040-mRNA-1:exon:2120;Parent=Msa0936040-mRNA-1
chr6_3 five_prime_UTR 6642154 6642353 6642154 ID=Msa0936040-mRNA-1:five_prime_utr;Parent=Msa0936040-mRNA-1
chr6_3 CDS 6642099 6642153 6642099 ID=Msa0936040-mRNA-1:cds;Parent=Msa0936040-mRNA-1
chr6_3 CDS 6641246 6641463 6641246 ID=Msa0936040-mRNA-1:cds;Parent=Msa0936040-mRNA-1
chr6_3 CDS 6638787 6639313 6638787 ID=Msa0936040-mRNA-1:cds;Parent=Msa0936040-mRNA-1
chr6_3 CDS 6637544 6638372 6637544 ID=Msa0936040-mRNA-1:cds;Parent=Msa0936040-mRNA-1
chr6_3 three_prime_UTR 6637436 6637543 6637436 ID=Msa0936040-mRNA-1:three_prime_utr;Parent=Msa0936040-mRNA-1
Gene Sequence

>Msa0936040

ATGGCTGGTGGACAGAAAACCAAGAGGCTCAGCAATTCATGCATTCTCCTCATAGTCATTGCAGGTATAGAGAGGTTTGCATTCAAAGGGGTAGCCTCAAATTTGGTAACTTATCTAACTGATGTTGTGGACTTAAGCAATTCATCTGCAGCAAAGATGGTTAATAGTTGGGTTGGATTCACTTCCATAATGCCATTGTTGGTGGCACCTATTGCTGATGCTTATTGGGCTAAATATTCCACCATAATGTCCTCATCTTTTCTCTATGTTATGGGACTTGCAGCATTGACAACAACAGCACTAGCAAGATCATGGCATCACAAAAACAGATCAATGTCATCTTCATTTCTTTCATTATCTCTCTATTTAATCTCATTAGGCCAAGGTGGATATAATCCATCTCTACAAGCCTTTGGAGCTGATCAACTTGGTGAAGATGAAGAACTACCTTGTAGTAACACAGATGACACAAGTAGCAACAAAAAAGCACTTTTCTTTCAATGGTGGTATTTTGGTGTTTGTGCTGGAAGCCTAATGGGTGTAACATTCATGTCTTACATCCAAGACACATTTGGTTGGGTAATAGGGTTTGCTATACCTGCGATTTCGATGCTTCTTTCTATCTTGATTTTCTCTAGTGGAAGCTCTATATATTCGTATAAGCAACAAGATGATGATGATGATCTTCGAGATAAGAAGCCTTTCACGAACATGTTTAAGAGTATAAAAGAATCTGCATTGAAATGCTTCCATTGTGAAATTACTCTACCAAATGACAAGTCTGAAAATGTCGAACTAGAGCTTCAAGAGAGACCACTTTGTCGCGAAAACTGTGAAAGCATTAAGGTCATAAATAAGGATTCTAAAATCAGCATGTGTCTGCTACCAAATGTAAAGGTTATGATTAAGCTATTGCCTATATGGACAATGCTTCTCATGTTTGCAGTGATTTTCCAACAACCTGCAACTTTTTTCACCAAACAAGGCATGACAATGAAGAGAAACATAGGTTCAAATTTCAAGATACCACCGGCCACACTCCAAAGTGCGATAACATTGTCCATAATACTATTGATGCCGTTATACGACAGAGTTTTTATACCGTTCGCTCAGCTGATAACACGACAGGAAAAAGGTATAAACGTGATGCAAAGGATGGGAATCGGAATGGTTCTCTCAATCATAGCGATGATTATCGCGGCACTAGTTGAAATGAAACGCCTTGCTATCGGCCGACAAATGAGAAGTGAAGGATTACTATCAGAAATAGTACCAATAAGCATTTTCTGGTTGTTACCACAGTACATTCTTCTTGGTATATCAGATATTTTCACAGTGGTTGGTATGCAAGAATTTTTTTACGGTGAAGTTCCGAAGAATATGAGAACAATGGGAATCGCATTGTATACAAGTGTTTTCGGAGTTGGAAGCTTTGTTAGTGCATTGATGATTACACTTGTTGAAGTATACACAAGTTCAAAAGGAACTCCAAGTTGGTTTTCTGATGATATGGTCGAGGCACGTTTGGATAATTACTATTGGCTTCTAGCTTGGTTAAGTTCAATTAGCTTATTGTTGTATACACTATTGTGTAAATATTACTATAATAAGAGTGAATCAGATAGTTAA
Protein sequence

>Msa0936040

MAGGQKTKRLSNSCILLIVIAGIERFAFKGVASNLVTYLTDVVDLSNSSAAKMVNSWVGFTSIMPLLVAPIADAYWAKYSTIMSSSFLYVMGLAALTTTALARSWHHKNRSMSSSFLSLSLYLISLGQGGYNPSLQAFGADQLGEDEELPCSNTDDTSSNKKALFFQWWYFGVCAGSLMGVTFMSYIQDTFGWVIGFAIPAISMLLSILIFSSGSSIYSYKQQDDDDDLRDKKPFTNMFKSIKESALKCFHCEITLPNDKSENVELELQERPLCRENCESIKVINKDSKISMCLLPNVKVMIKLLPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITLSIILLMPLYDRVFIPFAQLITRQEKGINVMQRMGIGMVLSIIAMIIAALVEMKRLAIGRQMRSEGLLSEIVPISIFWLLPQYILLGISDIFTVVGMQEFFYGEVPKNMRTMGIALYTSVFGVGSFVSALMITLVEVYTSSKGTPSWFSDDMVEARLDNYYWLLAWLSSISLLLYTLLCKYYYNKSESDS*