Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944720 | sp|O82632|GATA9_ARATH | 37.546 | 269 | 106 | 10 | 2 | 266 | 53 | 263 | 8.77e-42 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944720 | G7KQ55 | 91.941 | 273 | 6 | 3 | 1 | 269 | 1 | 261 | 1.21e-180 | 506 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0944720 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0637590 | Msa0944720 | -0.805333 | 1.404363e-49 | -8.615850e-47 |
| Msa0739820 | Msa0944720 | 0.814099 | 1.830327e-51 | -8.615850e-47 |
| Msa0829990 | Msa0944720 | -0.822129 | 2.793499e-53 | -8.615850e-47 |
| Msa0129770 | Msa0944720 | -0.801051 | 1.080445e-48 | -8.615850e-47 |
| Msa0135030 | Msa0944720 | -0.810760 | 9.819894e-51 | -8.615850e-47 |
| Msa0235820 | Msa0944720 | -0.804522 | 2.074955e-49 | -8.615850e-47 |
| Msa0335050 | Msa0944720 | -0.808016 | 3.809701e-50 | -8.615850e-47 |
| Msa0340370 | Msa0944720 | -0.805938 | 1.048258e-49 | -8.615850e-47 |
| Msa0345890 | Msa0944720 | -0.807469 | 4.979569e-50 | -8.615850e-47 |
| Msa0574420 | Msa0944720 | -0.805623 | 1.220782e-49 | -8.615850e-47 |
| Msa0859040 | Msa0944720 | -0.800990 | 1.111826e-48 | -8.615850e-47 |
| Msa0944720 | Msa1084890 | -0.809007 | 2.340426e-50 | -8.615850e-47 |
| Msa0944720 | Msa1173800 | -0.804839 | 1.781927e-49 | -8.615850e-47 |
| Msa0944720 | Msa1262540 | -0.806192 | 9.266435e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944720 | MtrunA17_Chr6g0461591 | 91.941 | 273 | 6 | 3 | 1 | 269 | 1 | 261 | 0.0 | 506 |
| Msa0944720 | MtrunA17_Chr7g0253101 | 56.250 | 288 | 74 | 8 | 1 | 268 | 1 | 256 | 1.10e-98 | 289 |
| Msa0944720 | MtrunA17_Chr1g0146231 | 37.037 | 243 | 105 | 7 | 26 | 266 | 104 | 300 | 2.57e-36 | 132 |
| Msa0944720 | MtrunA17_Chr4g0035891 | 81.538 | 65 | 12 | 0 | 200 | 264 | 211 | 275 | 6.91e-34 | 124 |
| Msa0944720 | MtrunA17_Chr1g0199671 | 80.000 | 65 | 13 | 0 | 200 | 264 | 242 | 306 | 1.86e-33 | 124 |
| Msa0944720 | MtrunA17_Chr8g0372291 | 73.333 | 75 | 18 | 1 | 190 | 264 | 210 | 282 | 4.53e-33 | 122 |
| Msa0944720 | MtrunA17_Chr2g0326771 | 77.143 | 70 | 16 | 0 | 200 | 269 | 216 | 285 | 4.72e-33 | 122 |
| Msa0944720 | MtrunA17_Chr8g0340401 | 73.913 | 69 | 18 | 0 | 198 | 266 | 224 | 292 | 9.37e-33 | 122 |
| Msa0944720 | MtrunA17_Chr1g0213161 | 70.270 | 74 | 22 | 0 | 192 | 265 | 144 | 217 | 1.41e-32 | 119 |
| Msa0944720 | MtrunA17_Chr3g0140331 | 68.750 | 80 | 20 | 1 | 187 | 266 | 245 | 319 | 3.30e-32 | 121 |
| Msa0944720 | MtrunA17_Chr3g0145121 | 78.462 | 65 | 14 | 0 | 200 | 264 | 215 | 279 | 7.47e-32 | 119 |
| Msa0944720 | MtrunA17_Chr1g0169431 | 76.471 | 68 | 16 | 0 | 199 | 266 | 171 | 238 | 9.46e-32 | 117 |
| Msa0944720 | MtrunA17_Chr5g0404981 | 80.000 | 65 | 13 | 0 | 200 | 264 | 300 | 364 | 1.32e-31 | 120 |
| Msa0944720 | MtrunA17_Chr4g0028961 | 76.923 | 65 | 15 | 0 | 200 | 264 | 232 | 296 | 6.02e-31 | 117 |
| Msa0944720 | MtrunA17_Chr5g0395391 | 72.059 | 68 | 19 | 0 | 199 | 266 | 269 | 336 | 3.63e-30 | 115 |
| Msa0944720 | MtrunA17_Chr5g0395391 | 70.769 | 65 | 19 | 0 | 199 | 263 | 167 | 231 | 5.91e-28 | 109 |
| Msa0944720 | MtrunA17_Chr7g0232671 | 57.576 | 66 | 28 | 0 | 196 | 261 | 183 | 248 | 1.39e-20 | 88.2 |
| Msa0944720 | MtrunA17_Chr7g0232701 | 56.452 | 62 | 27 | 0 | 200 | 261 | 73 | 134 | 6.95e-19 | 80.5 |
| Msa0944720 | MtrunA17_Chr7g0232681 | 54.839 | 62 | 28 | 0 | 200 | 261 | 132 | 193 | 3.23e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944720 | AT4G32890.1 | 37.546 | 269 | 106 | 10 | 2 | 266 | 53 | 263 | 8.92e-43 | 148 |
| Msa0944720 | AT2G45050.1 | 36.864 | 236 | 80 | 5 | 31 | 266 | 79 | 245 | 1.03e-36 | 131 |
| Msa0944720 | AT5G25830.1 | 34.444 | 270 | 128 | 9 | 2 | 266 | 60 | 285 | 2.08e-36 | 132 |
| Msa0944720 | AT3G60530.1 | 79.710 | 69 | 14 | 0 | 198 | 266 | 156 | 224 | 1.01e-35 | 128 |
| Msa0944720 | AT5G66320.2 | 34.909 | 275 | 128 | 7 | 2 | 264 | 78 | 313 | 2.46e-35 | 129 |
| Msa0944720 | AT5G66320.1 | 34.909 | 275 | 128 | 7 | 2 | 264 | 78 | 313 | 2.46e-35 | 129 |
| Msa0944720 | AT3G24050.1 | 75.000 | 68 | 17 | 0 | 199 | 266 | 193 | 260 | 8.83e-34 | 124 |
| Msa0944720 | AT3G54810.1 | 67.470 | 83 | 26 | 1 | 182 | 264 | 212 | 293 | 1.67e-32 | 122 |
| Msa0944720 | AT3G54810.2 | 67.470 | 83 | 26 | 1 | 182 | 264 | 212 | 293 | 1.67e-32 | 122 |
| Msa0944720 | AT4G36240.1 | 36.641 | 262 | 84 | 11 | 10 | 268 | 50 | 232 | 1.79e-32 | 119 |
| Msa0944720 | AT3G51080.1 | 81.538 | 65 | 12 | 0 | 200 | 264 | 221 | 285 | 2.97e-32 | 120 |
| Msa0944720 | AT1G08010.2 | 72.308 | 65 | 18 | 0 | 200 | 264 | 220 | 284 | 1.53e-31 | 119 |
| Msa0944720 | AT1G08010.1 | 72.308 | 65 | 18 | 0 | 200 | 264 | 220 | 284 | 1.53e-31 | 119 |
| Msa0944720 | AT1G08010.3 | 72.308 | 65 | 18 | 0 | 200 | 264 | 220 | 284 | 1.53e-31 | 119 |
| Msa0944720 | AT4G34680.1 | 73.846 | 65 | 17 | 0 | 200 | 264 | 180 | 244 | 1.84e-30 | 115 |
| Msa0944720 | AT4G34680.2 | 73.846 | 65 | 17 | 0 | 200 | 264 | 180 | 244 | 1.84e-30 | 115 |
| Msa0944720 | AT1G08000.2 | 72.727 | 66 | 18 | 0 | 199 | 264 | 217 | 282 | 2.90e-30 | 115 |
| Msa0944720 | AT1G08000.1 | 72.727 | 66 | 18 | 0 | 199 | 264 | 217 | 282 | 2.90e-30 | 115 |
| Msa0944720 | AT2G28340.1 | 42.857 | 133 | 70 | 2 | 137 | 266 | 128 | 257 | 1.20e-26 | 105 |
| Msa0944720 | AT3G45170.1 | 61.538 | 65 | 25 | 0 | 202 | 266 | 117 | 181 | 1.80e-25 | 100 |
Find 52 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTTGAAACAAGCTTAT+TGG | 0.158008 | 6_3:+21691583 | Msa0944720:CDS |
| TGCAACAATGTATCAGTTTC+AGG | 0.183831 | 6_3:+21690517 | Msa0944720:CDS |
| AGACCAAAAGATGGGATTTA+AGG | 0.277183 | 6_3:+21692084 | Msa0944720:three_prime_UTR |
| CAGCTCCTAGTACCAAAATT+TGG | 0.286985 | 6_3:+21691514 | Msa0944720:CDS |
| ATGTGAATGTGACCAAATTT+TGG | 0.288556 | 6_3:-21691526 | None:intergenic |
| GCTCCTTAAATCCCATCTTT+TGG | 0.294442 | 6_3:-21692087 | None:intergenic |
| ATGGTCCTGCCCTCCATTGT+GGG | 0.318440 | 6_3:-21691851 | None:intergenic |
| TGAGTGCACCTTCTTGCATT+TGG | 0.340927 | 6_3:-21691810 | None:intergenic |
| CCGTGTTGTGAGCAGGAAAA+AGG | 0.381223 | 6_3:-21690561 | None:intergenic |
| TAATTAGTGATTAGTGAAGT+TGG | 0.399199 | 6_3:+21692036 | Msa0944720:three_prime_UTR |
| ACAATGGAGGGCAGGACCAT+TGG | 0.400380 | 6_3:+21691854 | Msa0944720:CDS |
| AATGGTCCTGCCCTCCATTG+TGG | 0.428822 | 6_3:-21691852 | None:intergenic |
| TTGCAAATATCCATGTCTAT+AGG | 0.443264 | 6_3:-21690499 | None:intergenic |
| AGGGTGCGAAGAAGAGGAGG+AGG | 0.446581 | 6_3:-21690476 | None:intergenic |
| TGAATTTGAACATTAGAAGA+AGG | 0.457759 | 6_3:-21691375 | None:intergenic |
| GAGAATGCAATCTATTAAGT+AGG | 0.465726 | 6_3:+21692010 | Msa0944720:CDS |
| CAATGGAGGGCAGGACCATT+GGG | 0.466961 | 6_3:+21691855 | Msa0944720:CDS |
| ACAAAAGTAGGACTCTTTGC+TGG | 0.482358 | 6_3:-21691945 | None:intergenic |
| GGGTGCGAAGAAGAGGAGGA+GGG | 0.484084 | 6_3:-21690475 | None:intergenic |
| CGGAGCAATGAGTTCGCTGT+CGG | 0.489222 | 6_3:-21691610 | None:intergenic |
| GTAGGTTGTTGCCAGAGTAT+AGG | 0.492955 | 6_3:+21691922 | Msa0944720:CDS |
| AGACTAACCGTGTTGTGAGC+AGG | 0.496025 | 6_3:-21690568 | None:intergenic |
| CTCTTTGCTGGCCTATACTC+TGG | 0.507705 | 6_3:-21691933 | None:intergenic |
| TATAGGAGGGTGCGAAGAAG+AGG | 0.524978 | 6_3:-21690482 | None:intergenic |
| CAAATATCCATGTCTATAGG+AGG | 0.525607 | 6_3:-21690496 | None:intergenic |
| TCAGGAAGTGGATTTAGGGA+TGG | 0.532369 | 6_3:+21691293 | Msa0944720:intron |
| TGCAAGTAGCTAACAAAAGT+AGG | 0.538933 | 6_3:-21691957 | None:intergenic |
| AGGACCCCACAATGGAGGGC+AGG | 0.548944 | 6_3:+21691846 | Msa0944720:CDS |
| TTTCATGTAGACCAAAAGAT+GGG | 0.549561 | 6_3:+21692076 | Msa0944720:three_prime_UTR |
| TGGTCCTGCCCTCCATTGTG+GGG | 0.559124 | 6_3:-21691850 | None:intergenic |
| AACATATTCCAAATGCAAGA+AGG | 0.563153 | 6_3:+21691802 | Msa0944720:CDS |
| AAGTGGATTTAGGGATGGAG+TGG | 0.569403 | 6_3:+21691298 | Msa0944720:CDS |
| AAGCTTGTTTCAACAAAGGA+GGG | 0.570788 | 6_3:-21691578 | None:intergenic |
| AGAATGCAATCTATTAAGTA+GGG | 0.572327 | 6_3:+21692011 | Msa0944720:CDS |
| GAAGGTGCTATGACACAACT+TGG | 0.573345 | 6_3:-21691357 | None:intergenic |
| TAAGCTTGTTTCAACAAAGG+AGG | 0.573541 | 6_3:-21691579 | None:intergenic |
| ATGGTACTCAGAGCTTCTGT+CGG | 0.579340 | 6_3:-21690390 | None:intergenic |
| AGGAGGGTGCGAAGAAGAGG+AGG | 0.582183 | 6_3:-21690479 | None:intergenic |
| CATTCACATCTTATAAGTGA+TGG | 0.584037 | 6_3:+21691540 | Msa0944720:CDS |
| TGTGGTGTGAGGTACAAGTC+TGG | 0.585109 | 6_3:+21691900 | Msa0944720:CDS |
| CAATAAGCTTGTTTCAACAA+AGG | 0.588114 | 6_3:-21691582 | None:intergenic |
| ACAAAGGACCCCACAATGGA+GGG | 0.595325 | 6_3:+21691842 | Msa0944720:CDS |
| GTGTGAGGTACAAGTCTGGT+AGG | 0.597780 | 6_3:+21691904 | Msa0944720:CDS |
| GCACTCATTGTTTGTCACAA+AGG | 0.603068 | 6_3:+21691826 | Msa0944720:CDS |
| CACAAAGGACCCCACAATGG+AGG | 0.605327 | 6_3:+21691841 | Msa0944720:CDS |
| TTCGCACCCTCCTATAGACA+TGG | 0.629163 | 6_3:+21690489 | Msa0944720:exon |
| AAAGTCTCTGCAGTTGCGTG+CGG | 0.637759 | 6_3:+21691645 | Msa0944720:CDS |
| TGATGTTAATGATGATGATG+AGG | 0.646926 | 6_3:+21691779 | Msa0944720:CDS |
| AAATATCCATGTCTATAGGA+GGG | 0.653251 | 6_3:-21690495 | None:intergenic |
| TGTCACAAAGGACCCCACAA+TGG | 0.681006 | 6_3:+21691838 | Msa0944720:CDS |
| TATGCAATGCATGTGGTGTG+AGG | 0.734829 | 6_3:+21691889 | Msa0944720:CDS |
| AAAACACTATGCAATGCATG+TGG | 0.740057 | 6_3:+21691882 | Msa0944720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAAGTTAATTAAAT+TGG | - | chr6_3:21690347-21690366 | None:intergenic | 10.0% |
| !! | ATGAAAAAAGTTAATTAAAT+TGG | - | chr6_3:21690347-21690366 | None:intergenic | 10.0% |
| !!! | CTAAATTTTGATTTGATTTT+TGG | + | chr6_3:21690818-21690837 | Msa0944720:intron | 15.0% |
| !!! | ATAGAATTTGGTAATATTTA+AGG | + | chr6_3:21691169-21691188 | Msa0944720:intron | 15.0% |
| !!! | TAATAAATTTTGGTTTTTTG+TGG | + | chr6_3:21691262-21691281 | Msa0944720:intron | 15.0% |
| !!! | CTAAATTTTGATTTGATTTT+TGG | + | chr6_3:21690818-21690837 | Msa0944720:intron | 15.0% |
| !!! | ATAGAATTTGGTAATATTTA+AGG | + | chr6_3:21691169-21691188 | Msa0944720:intron | 15.0% |
| !!! | TAATAAATTTTGGTTTTTTG+TGG | + | chr6_3:21691262-21691281 | Msa0944720:intron | 15.0% |
| !!! | TGTAATACTTTAAGTTCATA+AGG | + | chr6_3:21690707-21690726 | Msa0944720:intron | 20.0% |
| !!! | AGTTTGTAGCTAATAAATTT+TGG | + | chr6_3:21691252-21691271 | Msa0944720:intron | 20.0% |
| !!! | TGTAATACTTTAAGTTCATA+AGG | + | chr6_3:21690707-21690726 | Msa0944720:intron | 20.0% |
| !!! | AGTTTGTAGCTAATAAATTT+TGG | + | chr6_3:21691252-21691271 | Msa0944720:intron | 20.0% |
| !!! | TCAAGTGTTCTATTGTTTTT+TGG | + | chr6_3:21691047-21691066 | Msa0944720:intron | 25.0% |
| ! | ATTTGTGTATGCATAGAATT+TGG | + | chr6_3:21691157-21691176 | Msa0944720:intron | 25.0% |
| !!! | TTTTTTGTGGCAAATTTTTC+AGG | + | chr6_3:21691275-21691294 | Msa0944720:intron | 25.0% |
| ! | TGAATTTGAACATTAGAAGA+AGG | - | chr6_3:21691378-21691397 | None:intergenic | 25.0% |
| !!! | TAAGATTGATTTTGTTGTTG+AGG | - | chr6_3:21691441-21691460 | None:intergenic | 25.0% |
| ! | AGAATGCAATCTATTAAGTA+GGG | + | chr6_3:21692011-21692030 | Msa0944720:CDS | 25.0% |
| ! | TAATTAGTGATTAGTGAAGT+TGG | + | chr6_3:21692036-21692055 | Msa0944720:three_prime_UTR | 25.0% |
| !!! | TCAAGTGTTCTATTGTTTTT+TGG | + | chr6_3:21691047-21691066 | Msa0944720:intron | 25.0% |
| ! | ATTTGTGTATGCATAGAATT+TGG | + | chr6_3:21691157-21691176 | Msa0944720:intron | 25.0% |
| !!! | TTTTTTGTGGCAAATTTTTC+AGG | + | chr6_3:21691275-21691294 | Msa0944720:intron | 25.0% |
| ! | TGAATTTGAACATTAGAAGA+AGG | - | chr6_3:21691378-21691397 | None:intergenic | 25.0% |
| !!! | TAAGATTGATTTTGTTGTTG+AGG | - | chr6_3:21691441-21691460 | None:intergenic | 25.0% |
| ! | AGAATGCAATCTATTAAGTA+GGG | + | chr6_3:21692011-21692030 | Msa0944720:CDS | 25.0% |
| ! | TAATTAGTGATTAGTGAAGT+TGG | + | chr6_3:21692036-21692055 | Msa0944720:three_prime_UTR | 25.0% |
| ! | ATTCTGAGTGTTCTCTTTTA+TGG | - | chr6_3:21690412-21690431 | None:intergenic | 30.0% |
| AAAAAGAACAGAAGCAAGTT+TGG | - | chr6_3:21690451-21690470 | None:intergenic | 30.0% | |
| AAATATCCATGTCTATAGGA+GGG | - | chr6_3:21690498-21690517 | None:intergenic | 30.0% | |
| TTGCAAATATCCATGTCTAT+AGG | - | chr6_3:21690502-21690521 | None:intergenic | 30.0% | |
| GCTAGTACTTTATGCAAAAA+TGG | + | chr6_3:21690651-21690670 | Msa0944720:intron | 30.0% | |
| GTTTGTGTATGCATAGAATT+TGG | + | chr6_3:21690895-21690914 | Msa0944720:intron | 30.0% | |
| !!! | ATTTTTCAGGAAGTGGATTT+AGG | + | chr6_3:21691288-21691307 | Msa0944720:intron | 30.0% |
| !!! | TTTTTCAGGAAGTGGATTTA+GGG | + | chr6_3:21691289-21691308 | Msa0944720:intron | 30.0% |
| !!! | TTGCAAAATTTTGTTGTTCC+TGG | + | chr6_3:21691462-21691481 | Msa0944720:CDS | 30.0% |
| ! | ATGTGAATGTGACCAAATTT+TGG | - | chr6_3:21691529-21691548 | None:intergenic | 30.0% |
| CATTCACATCTTATAAGTGA+TGG | + | chr6_3:21691540-21691559 | Msa0944720:CDS | 30.0% | |
| ! | CAATAAGCTTGTTTCAACAA+AGG | - | chr6_3:21691585-21691604 | None:intergenic | 30.0% |
| CTTTGTTGAAACAAGCTTAT+TGG | + | chr6_3:21691583-21691602 | Msa0944720:CDS | 30.0% | |
| !! | GAGACTTTTTGCTCATTTTT+CGG | - | chr6_3:21691633-21691652 | None:intergenic | 30.0% |
| ! | TGATGTTAATGATGATGATG+AGG | + | chr6_3:21691779-21691798 | Msa0944720:CDS | 30.0% |
| AACATATTCCAAATGCAAGA+AGG | + | chr6_3:21691802-21691821 | Msa0944720:CDS | 30.0% | |
| GAGAATGCAATCTATTAAGT+AGG | + | chr6_3:21692010-21692029 | Msa0944720:CDS | 30.0% | |
| ! | TTTTCATGTAGACCAAAAGA+TGG | + | chr6_3:21692075-21692094 | Msa0944720:three_prime_UTR | 30.0% |
| TTTCATGTAGACCAAAAGAT+GGG | + | chr6_3:21692076-21692095 | Msa0944720:three_prime_UTR | 30.0% | |
| ! | ATTCTGAGTGTTCTCTTTTA+TGG | - | chr6_3:21690412-21690431 | None:intergenic | 30.0% |
| AAAAAGAACAGAAGCAAGTT+TGG | - | chr6_3:21690451-21690470 | None:intergenic | 30.0% | |
| AAATATCCATGTCTATAGGA+GGG | - | chr6_3:21690498-21690517 | None:intergenic | 30.0% | |
| TTGCAAATATCCATGTCTAT+AGG | - | chr6_3:21690502-21690521 | None:intergenic | 30.0% | |
| GCTAGTACTTTATGCAAAAA+TGG | + | chr6_3:21690651-21690670 | Msa0944720:intron | 30.0% | |
| GTTTGTGTATGCATAGAATT+TGG | + | chr6_3:21690895-21690914 | Msa0944720:intron | 30.0% | |
| !!! | ATTTTTCAGGAAGTGGATTT+AGG | + | chr6_3:21691288-21691307 | Msa0944720:intron | 30.0% |
| !!! | TTTTTCAGGAAGTGGATTTA+GGG | + | chr6_3:21691289-21691308 | Msa0944720:intron | 30.0% |
| !!! | TTGCAAAATTTTGTTGTTCC+TGG | + | chr6_3:21691462-21691481 | Msa0944720:CDS | 30.0% |
| ! | ATGTGAATGTGACCAAATTT+TGG | - | chr6_3:21691529-21691548 | None:intergenic | 30.0% |
| CATTCACATCTTATAAGTGA+TGG | + | chr6_3:21691540-21691559 | Msa0944720:CDS | 30.0% | |
| ! | CAATAAGCTTGTTTCAACAA+AGG | - | chr6_3:21691585-21691604 | None:intergenic | 30.0% |
| CTTTGTTGAAACAAGCTTAT+TGG | + | chr6_3:21691583-21691602 | Msa0944720:CDS | 30.0% | |
| !! | GAGACTTTTTGCTCATTTTT+CGG | - | chr6_3:21691633-21691652 | None:intergenic | 30.0% |
| ! | TGATGTTAATGATGATGATG+AGG | + | chr6_3:21691779-21691798 | Msa0944720:CDS | 30.0% |
| AACATATTCCAAATGCAAGA+AGG | + | chr6_3:21691802-21691821 | Msa0944720:CDS | 30.0% | |
| GAGAATGCAATCTATTAAGT+AGG | + | chr6_3:21692010-21692029 | Msa0944720:CDS | 30.0% | |
| ! | TTTTCATGTAGACCAAAAGA+TGG | + | chr6_3:21692075-21692094 | Msa0944720:three_prime_UTR | 30.0% |
| TTTCATGTAGACCAAAAGAT+GGG | + | chr6_3:21692076-21692095 | Msa0944720:three_prime_UTR | 30.0% | |
| CAAATATCCATGTCTATAGG+AGG | - | chr6_3:21690499-21690518 | None:intergenic | 35.0% | |
| TGCAACAATGTATCAGTTTC+AGG | + | chr6_3:21690517-21690536 | Msa0944720:CDS | 35.0% | |
| ! | GGTTTTTGCATTGTGTTTGA+AGG | - | chr6_3:21691420-21691439 | None:intergenic | 35.0% |
| !! | TGTGACCAAATTTTGGTACT+AGG | - | chr6_3:21691522-21691541 | None:intergenic | 35.0% |
| ! | AAGCTTGTTTCAACAAAGGA+GGG | - | chr6_3:21691581-21691600 | None:intergenic | 35.0% |
| ! | TAAGCTTGTTTCAACAAAGG+AGG | - | chr6_3:21691582-21691601 | None:intergenic | 35.0% |
| ATCAGACAGAAGCAAAAAGA+AGG | + | chr6_3:21691670-21691689 | Msa0944720:CDS | 35.0% | |
| TCAGACAGAAGCAAAAAGAA+GGG | + | chr6_3:21691671-21691690 | Msa0944720:CDS | 35.0% | |
| ! | CATGCATTGCATAGTGTTTT+TGG | - | chr6_3:21691882-21691901 | None:intergenic | 35.0% |
| AAAACACTATGCAATGCATG+TGG | + | chr6_3:21691882-21691901 | Msa0944720:CDS | 35.0% | |
| TGCAAGTAGCTAACAAAAGT+AGG | - | chr6_3:21691960-21691979 | None:intergenic | 35.0% | |
| AGACCAAAAGATGGGATTTA+AGG | + | chr6_3:21692084-21692103 | Msa0944720:three_prime_UTR | 35.0% | |
| CAAATATCCATGTCTATAGG+AGG | - | chr6_3:21690499-21690518 | None:intergenic | 35.0% | |
| TGCAACAATGTATCAGTTTC+AGG | + | chr6_3:21690517-21690536 | Msa0944720:CDS | 35.0% | |
| ! | GGTTTTTGCATTGTGTTTGA+AGG | - | chr6_3:21691420-21691439 | None:intergenic | 35.0% |
| !! | TGTGACCAAATTTTGGTACT+AGG | - | chr6_3:21691522-21691541 | None:intergenic | 35.0% |
| ! | AAGCTTGTTTCAACAAAGGA+GGG | - | chr6_3:21691581-21691600 | None:intergenic | 35.0% |
| ! | TAAGCTTGTTTCAACAAAGG+AGG | - | chr6_3:21691582-21691601 | None:intergenic | 35.0% |
| ATCAGACAGAAGCAAAAAGA+AGG | + | chr6_3:21691670-21691689 | Msa0944720:CDS | 35.0% | |
| TCAGACAGAAGCAAAAAGAA+GGG | + | chr6_3:21691671-21691690 | Msa0944720:CDS | 35.0% | |
| ! | CATGCATTGCATAGTGTTTT+TGG | - | chr6_3:21691882-21691901 | None:intergenic | 35.0% |
| AAAACACTATGCAATGCATG+TGG | + | chr6_3:21691882-21691901 | Msa0944720:CDS | 35.0% | |
| TGCAAGTAGCTAACAAAAGT+AGG | - | chr6_3:21691960-21691979 | None:intergenic | 35.0% | |
| AGACCAAAAGATGGGATTTA+AGG | + | chr6_3:21692084-21692103 | Msa0944720:three_prime_UTR | 35.0% | |
| AGGAAAAAGGTCATCAATGG+TGG | - | chr6_3:21690551-21690570 | None:intergenic | 40.0% | |
| AGCAGGAAAAAGGTCATCAA+TGG | - | chr6_3:21690554-21690573 | None:intergenic | 40.0% | |
| !!! | GTGGCAAATTTTTCAGGAAG+TGG | + | chr6_3:21691281-21691300 | Msa0944720:intron | 40.0% |
| CAGCTCCTAGTACCAAAATT+TGG | + | chr6_3:21691514-21691533 | Msa0944720:CDS | 40.0% | |
| AAAAAGAAGGGTGAAGAGAG+TGG | + | chr6_3:21691683-21691702 | Msa0944720:CDS | 40.0% | |
| GGTGAAGAGAGTGGTAAAAA+TGG | + | chr6_3:21691692-21691711 | Msa0944720:CDS | 40.0% | |
| !!! | GAGAAAGAGAGTTTTGAGCT+TGG | + | chr6_3:21691720-21691739 | Msa0944720:CDS | 40.0% |
| GCACTCATTGTTTGTCACAA+AGG | + | chr6_3:21691826-21691845 | Msa0944720:CDS | 40.0% | |
| !!! | CATAGTGTTTTTGGTCCCAA+TGG | - | chr6_3:21691873-21691892 | None:intergenic | 40.0% |
| ACAAAAGTAGGACTCTTTGC+TGG | - | chr6_3:21691948-21691967 | None:intergenic | 40.0% | |
| ! | GCTCCTTAAATCCCATCTTT+TGG | - | chr6_3:21692090-21692109 | None:intergenic | 40.0% |
| AGGAAAAAGGTCATCAATGG+TGG | - | chr6_3:21690551-21690570 | None:intergenic | 40.0% | |
| AGCAGGAAAAAGGTCATCAA+TGG | - | chr6_3:21690554-21690573 | None:intergenic | 40.0% | |
| !!! | GTGGCAAATTTTTCAGGAAG+TGG | + | chr6_3:21691281-21691300 | Msa0944720:intron | 40.0% |
| CAGCTCCTAGTACCAAAATT+TGG | + | chr6_3:21691514-21691533 | Msa0944720:CDS | 40.0% | |
| AAAAAGAAGGGTGAAGAGAG+TGG | + | chr6_3:21691683-21691702 | Msa0944720:CDS | 40.0% | |
| GGTGAAGAGAGTGGTAAAAA+TGG | + | chr6_3:21691692-21691711 | Msa0944720:CDS | 40.0% | |
| !!! | GAGAAAGAGAGTTTTGAGCT+TGG | + | chr6_3:21691720-21691739 | Msa0944720:CDS | 40.0% |
| GCACTCATTGTTTGTCACAA+AGG | + | chr6_3:21691826-21691845 | Msa0944720:CDS | 40.0% | |
| !!! | CATAGTGTTTTTGGTCCCAA+TGG | - | chr6_3:21691873-21691892 | None:intergenic | 40.0% |
| ACAAAAGTAGGACTCTTTGC+TGG | - | chr6_3:21691948-21691967 | None:intergenic | 40.0% | |
| ! | GCTCCTTAAATCCCATCTTT+TGG | - | chr6_3:21692090-21692109 | None:intergenic | 40.0% |
| ATGGTACTCAGAGCTTCTGT+CGG | - | chr6_3:21690393-21690412 | None:intergenic | 45.0% | |
| ! | CCTTTTTCCTGCTCACAACA+CGG | + | chr6_3:21690561-21690580 | Msa0944720:CDS | 45.0% |
| ! | TCAGGAAGTGGATTTAGGGA+TGG | + | chr6_3:21691293-21691312 | Msa0944720:intron | 45.0% |
| ! | AAGTGGATTTAGGGATGGAG+TGG | + | chr6_3:21691298-21691317 | Msa0944720:CDS | 45.0% |
| !! | GAAGGTGCTATGACACAACT+TGG | - | chr6_3:21691360-21691379 | None:intergenic | 45.0% |
| !! | CTCTTGCTTCTTGCTTTTCC+AGG | - | chr6_3:21691483-21691502 | None:intergenic | 45.0% |
| TGAGTGCACCTTCTTGCATT+TGG | - | chr6_3:21691813-21691832 | None:intergenic | 45.0% | |
| TATGCAATGCATGTGGTGTG+AGG | + | chr6_3:21691889-21691908 | Msa0944720:CDS | 45.0% | |
| GTAGGTTGTTGCCAGAGTAT+AGG | + | chr6_3:21691922-21691941 | Msa0944720:CDS | 45.0% | |
| ATGGTACTCAGAGCTTCTGT+CGG | - | chr6_3:21690393-21690412 | None:intergenic | 45.0% | |
| ! | CCTTTTTCCTGCTCACAACA+CGG | + | chr6_3:21690561-21690580 | Msa0944720:CDS | 45.0% |
| ! | TCAGGAAGTGGATTTAGGGA+TGG | + | chr6_3:21691293-21691312 | Msa0944720:intron | 45.0% |
| ! | AAGTGGATTTAGGGATGGAG+TGG | + | chr6_3:21691298-21691317 | Msa0944720:CDS | 45.0% |
| !! | GAAGGTGCTATGACACAACT+TGG | - | chr6_3:21691360-21691379 | None:intergenic | 45.0% |
| !! | CTCTTGCTTCTTGCTTTTCC+AGG | - | chr6_3:21691483-21691502 | None:intergenic | 45.0% |
| TGAGTGCACCTTCTTGCATT+TGG | - | chr6_3:21691813-21691832 | None:intergenic | 45.0% | |
| TATGCAATGCATGTGGTGTG+AGG | + | chr6_3:21691889-21691908 | Msa0944720:CDS | 45.0% | |
| GTAGGTTGTTGCCAGAGTAT+AGG | + | chr6_3:21691922-21691941 | Msa0944720:CDS | 45.0% | |
| !!! | AAATTTTGATTATATTTTTT+TGG | + | chr6_3:21691074-21691093 | Msa0944720:intron | 5.0% |
| !!! | AAATTTTGATTATATTTTTT+TGG | + | chr6_3:21691074-21691093 | Msa0944720:intron | 5.0% |
| ! | TATAGGAGGGTGCGAAGAAG+AGG | - | chr6_3:21690485-21690504 | None:intergenic | 50.0% |
| TTCGCACCCTCCTATAGACA+TGG | + | chr6_3:21690489-21690508 | Msa0944720:exon | 50.0% | |
| CCGTGTTGTGAGCAGGAAAA+AGG | - | chr6_3:21690564-21690583 | None:intergenic | 50.0% | |
| AGACTAACCGTGTTGTGAGC+AGG | - | chr6_3:21690571-21690590 | None:intergenic | 50.0% | |
| AAAGTCTCTGCAGTTGCGTG+CGG | + | chr6_3:21691645-21691664 | Msa0944720:CDS | 50.0% | |
| TGTCACAAAGGACCCCACAA+TGG | + | chr6_3:21691838-21691857 | Msa0944720:CDS | 50.0% | |
| ACAAAGGACCCCACAATGGA+GGG | + | chr6_3:21691842-21691861 | Msa0944720:CDS | 50.0% | |
| TGTGGTGTGAGGTACAAGTC+TGG | + | chr6_3:21691900-21691919 | Msa0944720:CDS | 50.0% | |
| GTGTGAGGTACAAGTCTGGT+AGG | + | chr6_3:21691904-21691923 | Msa0944720:CDS | 50.0% | |
| ! | CTCTTTGCTGGCCTATACTC+TGG | - | chr6_3:21691936-21691955 | None:intergenic | 50.0% |
| ! | TATAGGAGGGTGCGAAGAAG+AGG | - | chr6_3:21690485-21690504 | None:intergenic | 50.0% |
| TTCGCACCCTCCTATAGACA+TGG | + | chr6_3:21690489-21690508 | Msa0944720:exon | 50.0% | |
| CCGTGTTGTGAGCAGGAAAA+AGG | - | chr6_3:21690564-21690583 | None:intergenic | 50.0% | |
| AGACTAACCGTGTTGTGAGC+AGG | - | chr6_3:21690571-21690590 | None:intergenic | 50.0% | |
| AAAGTCTCTGCAGTTGCGTG+CGG | + | chr6_3:21691645-21691664 | Msa0944720:CDS | 50.0% | |
| TGTCACAAAGGACCCCACAA+TGG | + | chr6_3:21691838-21691857 | Msa0944720:CDS | 50.0% | |
| ACAAAGGACCCCACAATGGA+GGG | + | chr6_3:21691842-21691861 | Msa0944720:CDS | 50.0% | |
| TGTGGTGTGAGGTACAAGTC+TGG | + | chr6_3:21691900-21691919 | Msa0944720:CDS | 50.0% | |
| GTGTGAGGTACAAGTCTGGT+AGG | + | chr6_3:21691904-21691923 | Msa0944720:CDS | 50.0% | |
| ! | CTCTTTGCTGGCCTATACTC+TGG | - | chr6_3:21691936-21691955 | None:intergenic | 50.0% |
| CGGAGCAATGAGTTCGCTGT+CGG | - | chr6_3:21691613-21691632 | None:intergenic | 55.0% | |
| CACAAAGGACCCCACAATGG+AGG | + | chr6_3:21691841-21691860 | Msa0944720:CDS | 55.0% | |
| ATGGTCCTGCCCTCCATTGT+GGG | - | chr6_3:21691854-21691873 | None:intergenic | 55.0% | |
| AATGGTCCTGCCCTCCATTG+TGG | - | chr6_3:21691855-21691874 | None:intergenic | 55.0% | |
| ACAATGGAGGGCAGGACCAT+TGG | + | chr6_3:21691854-21691873 | Msa0944720:CDS | 55.0% | |
| CAATGGAGGGCAGGACCATT+GGG | + | chr6_3:21691855-21691874 | Msa0944720:CDS | 55.0% | |
| CGGAGCAATGAGTTCGCTGT+CGG | - | chr6_3:21691613-21691632 | None:intergenic | 55.0% | |
| CACAAAGGACCCCACAATGG+AGG | + | chr6_3:21691841-21691860 | Msa0944720:CDS | 55.0% | |
| ATGGTCCTGCCCTCCATTGT+GGG | - | chr6_3:21691854-21691873 | None:intergenic | 55.0% | |
| AATGGTCCTGCCCTCCATTG+TGG | - | chr6_3:21691855-21691874 | None:intergenic | 55.0% | |
| ACAATGGAGGGCAGGACCAT+TGG | + | chr6_3:21691854-21691873 | Msa0944720:CDS | 55.0% | |
| CAATGGAGGGCAGGACCATT+GGG | + | chr6_3:21691855-21691874 | Msa0944720:CDS | 55.0% | |
| GGGTGCGAAGAAGAGGAGGA+GGG | - | chr6_3:21690478-21690497 | None:intergenic | 60.0% | |
| AGGGTGCGAAGAAGAGGAGG+AGG | - | chr6_3:21690479-21690498 | None:intergenic | 60.0% | |
| ! | AGGAGGGTGCGAAGAAGAGG+AGG | - | chr6_3:21690482-21690501 | None:intergenic | 60.0% |
| TGGTCCTGCCCTCCATTGTG+GGG | - | chr6_3:21691853-21691872 | None:intergenic | 60.0% | |
| GGGTGCGAAGAAGAGGAGGA+GGG | - | chr6_3:21690478-21690497 | None:intergenic | 60.0% | |
| AGGGTGCGAAGAAGAGGAGG+AGG | - | chr6_3:21690479-21690498 | None:intergenic | 60.0% | |
| ! | AGGAGGGTGCGAAGAAGAGG+AGG | - | chr6_3:21690482-21690501 | None:intergenic | 60.0% |
| TGGTCCTGCCCTCCATTGTG+GGG | - | chr6_3:21691853-21691872 | None:intergenic | 60.0% | |
| AGGACCCCACAATGGAGGGC+AGG | + | chr6_3:21691846-21691865 | Msa0944720:CDS | 65.0% | |
| AGGACCCCACAATGGAGGGC+AGG | + | chr6_3:21691846-21691865 | Msa0944720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 21690311 | 21692223 | 21690311 | ID=Msa0944720;Name=Msa0944720 |
| chr6_3 | mRNA | 21690311 | 21692223 | 21690311 | ID=Msa0944720-mRNA-1;Parent=Msa0944720;Name=Msa0944720-mRNA-1;_AED=0.00;_eAED=0.00;_QI=197|1|1|1|1|1|2|192|269 |
| chr6_3 | exon | 21690311 | 21690582 | 21690311 | ID=Msa0944720-mRNA-1:exon:6489;Parent=Msa0944720-mRNA-1 |
| chr6_3 | exon | 21691297 | 21692223 | 21691297 | ID=Msa0944720-mRNA-1:exon:6490;Parent=Msa0944720-mRNA-1 |
| chr6_3 | five_prime_UTR | 21690311 | 21690507 | 21690311 | ID=Msa0944720-mRNA-1:five_prime_utr;Parent=Msa0944720-mRNA-1 |
| chr6_3 | CDS | 21690508 | 21690582 | 21690508 | ID=Msa0944720-mRNA-1:cds;Parent=Msa0944720-mRNA-1 |
| chr6_3 | CDS | 21691297 | 21692031 | 21691297 | ID=Msa0944720-mRNA-1:cds;Parent=Msa0944720-mRNA-1 |
| chr6_3 | three_prime_UTR | 21692032 | 21692223 | 21692032 | ID=Msa0944720-mRNA-1:three_prime_utr;Parent=Msa0944720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
