AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0637590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637590 MtrunA17_Chr4g0020691 97.500 120 3 0 1 120 1 120 2.08e-85 244
Msa0637590 MtrunA17_Chr2g0284621 89.167 120 13 0 1 120 1 120 1.87e-77 224
Msa0637590 MtrunA17_Chr8g0371681 54.386 114 49 2 9 120 12 124 3.20e-37 122
Msa0637590 MtrunA17_Chr5g0405631 55.556 108 45 2 10 115 30 136 2.17e-34 116
Msa0637590 MtrunA17_Chr5g0406281 42.593 108 61 1 12 119 75 181 1.61e-27 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637590 AT2G21045.1 63.115 122 42 2 1 120 30 150 1.14e-51 160
Msa0637590 AT2G17850.1 49.167 120 58 2 3 120 25 143 7.03e-33 113
Msa0637590 AT5G66170.3 42.975 121 66 2 1 119 5 124 7.35e-33 112
Msa0637590 AT5G66170.2 43.089 123 65 3 1 119 5 126 2.31e-31 108
Msa0637590 AT5G66040.1 44.444 108 59 1 12 119 10 116 1.87e-27 98.2
Msa0637590 AT2G17850.3 38.816 152 58 3 3 120 25 175 3.95e-26 96.7
Msa0637590 AT4G35770.1 44.211 95 53 0 22 116 81 175 9.84e-26 95.5
Msa0637590 AT2G17850.2 48.913 92 44 2 3 92 25 115 1.96e-23 88.2
Msa0637590 AT5G66170.1 40.816 98 55 2 1 96 5 101 7.02e-23 87.0
Msa0637590 AT4G35770.2 45.333 75 41 0 22 96 81 155 2.38e-18 75.9
Msa0637590 AT4G35770.3 42.683 82 47 0 22 103 81 162 2.38e-18 76.3
Msa0637590 AT4G35770.5 46.667 60 32 0 22 81 81 140 1.07e-14 66.2
Msa0637590 AT5G66040.2 44.068 59 33 0 61 119 3 61 4.48e-13 59.7

Find 31 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTGGTTAACAAAATT+TGG 0.077440 4_3:+29713352 None:intergenic
GTCATAGACTTACTGAATTA+TGG 0.234240 4_3:+29713137 None:intergenic
TTCTTCTGTGCTGAACAAAT+AGG 0.299247 4_3:+29713637 None:intergenic
TCTTCTGTGCTGAACAAATA+GGG 0.319017 4_3:+29713638 None:intergenic
CAAATTCAGGCTTGTAATGC+TGG 0.378391 4_3:-29713190 Msa0637590:intron
TGGGTGGATGCTGGATTTGC+AGG 0.391447 4_3:-29711977 None:intergenic
AGATGAATCTAGCAGATCTT+TGG 0.407928 4_3:+29713831 None:intergenic
GGGAGGCTACTCTGCGTGGG+TGG 0.422325 4_3:-29711993 Msa0637590:CDS
TTTGGTAGCATGGACATCTA+AGG 0.431769 4_3:+29713849 None:intergenic
TCTTATATATTGCTTCTACT+TGG 0.436133 4_3:+29713338 None:intergenic
GAGGAAGATCAAGTCGAGCC+TGG 0.438094 4_3:-29713168 Msa0637590:CDS
TACTCTGCGTGGGTGGATGC+TGG 0.443842 4_3:-29711986 Msa0637590:CDS
AAAGATCTGCTAGATTCATC+TGG 0.488656 4_3:-29713829 Msa0637590:CDS
TATTTGTTCAGCACAGAAGA+AGG 0.505003 4_3:-29713635 Msa0637590:intron
CGTTAATAGCATTCTCAACA+TGG 0.507094 4_3:+29713663 None:intergenic
ATTTAAACATATTGTTAACA+TGG 0.515720 4_3:-29712017 Msa0637590:CDS
CTAGCAGATCTTTGGTAGCA+TGG 0.528750 4_3:+29713839 None:intergenic
TTTAAACATATTGTTAACAT+GGG 0.557076 4_3:-29712016 Msa0637590:CDS
AGGAAGATCAAGTCGAGCCT+GGG 0.580327 4_3:-29713167 Msa0637590:CDS
TGAATTATGGAGATCAACCC+AGG 0.586135 4_3:+29713150 None:intergenic
AAACATATTGTTAACATGGG+GGG 0.595696 4_3:-29712013 Msa0637590:CDS
AGAAGCAATATATAAGAGTG+AGG 0.598950 4_3:-29713332 Msa0637590:CDS
CTTCTGTGCTGAACAAATAG+GGG 0.608024 4_3:+29713639 None:intergenic
GTTACAATTATCTTGATGTG+AGG 0.616591 4_3:-29713807 Msa0637590:intron
GAGTGAGGATCACTTAATTG+TGG 0.617072 4_3:-29713317 Msa0637590:intron
TTAAACATATTGTTAACATG+GGG 0.636631 4_3:-29712015 Msa0637590:CDS
TAAACATATTGTTAACATGG+GGG 0.658767 4_3:-29712014 Msa0637590:CDS
AAATATAATGGACACCACAA+AGG 0.664806 4_3:-29713984 None:intergenic
ATTCAGGCTTGTAATGCTGG+AGG 0.667532 4_3:-29713187 Msa0637590:intron
CCAATGAAATAGGACTGTGG+AGG 0.697727 4_3:-29713699 Msa0637590:intron
TGTCCAATGAAATAGGACTG+TGG 0.713009 4_3:-29713702 Msa0637590:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATTGAAACTAA+CGG + chr4_3:29712942-29712961 None:intergenic 10.0%
!! CTAAAATAAAAAAAACTATT+AGG - chr4_3:29713068-29713087 Msa0637590:intron 10.0%
!! CAAAAATAAATAAAATTAGT+AGG - chr4_3:29713396-29713415 Msa0637590:intron 10.0%
!!! ATTGTTTTTTTATATTAAAG+AGG - chr4_3:29713807-29713826 Msa0637590:intron 10.0%
!! AAAAAAAAAATTGAAACTAA+CGG + chr4_3:29712942-29712961 None:intergenic 10.0%
!! CTAAAATAAAAAAAACTATT+AGG - chr4_3:29713068-29713087 Msa0637590:intron 10.0%
!! CAAAAATAAATAAAATTAGT+AGG - chr4_3:29713396-29713415 Msa0637590:intron 10.0%
!!! ATTGTTTTTTTATATTAAAG+AGG - chr4_3:29713807-29713826 Msa0637590:intron 10.0%
!! AAATTAAAAATGAAGAAACT+GGG + chr4_3:29712189-29712208 None:intergenic 15.0%
!! AAAATTAAAAATGAAGAAAC+TGG + chr4_3:29712190-29712209 None:intergenic 15.0%
!! AATTTACCCTAAAATAAATT+AGG - chr4_3:29712886-29712905 Msa0637590:intron 15.0%
!!! TGAAATCCTAATTTATTTTA+GGG + chr4_3:29712895-29712914 None:intergenic 15.0%
!!! TTGAAATCCTAATTTATTTT+AGG + chr4_3:29712896-29712915 None:intergenic 15.0%
!! AAAAAAAAATTGAAACTAAC+GGG + chr4_3:29712941-29712960 None:intergenic 15.0%
!!! TTTTTTCTTCAAATGATTAA+GGG + chr4_3:29713278-29713297 None:intergenic 15.0%
!!! TTTTTTTCTTCAAATGATTA+AGG + chr4_3:29713279-29713298 None:intergenic 15.0%
!!! ATTCATTTATTTTAAACCAA+TGG + chr4_3:29713351-29713370 None:intergenic 15.0%
!! AGTAATTAATTATTACTGAT+GGG + chr4_3:29713440-29713459 None:intergenic 15.0%
!! AAGTAATTAATTATTACTGA+TGG + chr4_3:29713441-29713460 None:intergenic 15.0%
!!! AAATAATTTTGAATGCTTAA+TGG + chr4_3:29713878-29713897 None:intergenic 15.0%
!! ATTTAAACATATTGTTAACA+TGG - chr4_3:29713939-29713958 Msa0637590:intron 15.0%
!! TTTAAACATATTGTTAACAT+GGG - chr4_3:29713940-29713959 Msa0637590:intron 15.0%
!! AAATTAAAAATGAAGAAACT+GGG + chr4_3:29712189-29712208 None:intergenic 15.0%
!! AAAATTAAAAATGAAGAAAC+TGG + chr4_3:29712190-29712209 None:intergenic 15.0%
!! AATTTACCCTAAAATAAATT+AGG - chr4_3:29712886-29712905 Msa0637590:intron 15.0%
!!! TGAAATCCTAATTTATTTTA+GGG + chr4_3:29712895-29712914 None:intergenic 15.0%
!!! TTGAAATCCTAATTTATTTT+AGG + chr4_3:29712896-29712915 None:intergenic 15.0%
!! AAAAAAAAATTGAAACTAAC+GGG + chr4_3:29712941-29712960 None:intergenic 15.0%
!!! TTTTTTCTTCAAATGATTAA+GGG + chr4_3:29713278-29713297 None:intergenic 15.0%
!!! TTTTTTTCTTCAAATGATTA+AGG + chr4_3:29713279-29713298 None:intergenic 15.0%
!!! ATTCATTTATTTTAAACCAA+TGG + chr4_3:29713351-29713370 None:intergenic 15.0%
!! AGTAATTAATTATTACTGAT+GGG + chr4_3:29713440-29713459 None:intergenic 15.0%
!! AAGTAATTAATTATTACTGA+TGG + chr4_3:29713441-29713460 None:intergenic 15.0%
!!! AAATAATTTTGAATGCTTAA+TGG + chr4_3:29713878-29713897 None:intergenic 15.0%
!! ATTTAAACATATTGTTAACA+TGG - chr4_3:29713939-29713958 Msa0637590:intron 15.0%
!! TTTAAACATATTGTTAACAT+GGG - chr4_3:29713940-29713959 Msa0637590:intron 15.0%
!! TAACATAATATAGAATGGAA+TGG + chr4_3:29712019-29712038 None:intergenic 20.0%
!! TTCCATTCTATATTATGTTA+TGG - chr4_3:29712019-29712038 Msa0637590:CDS 20.0%
!! ATCCATAACATAATATAGAA+TGG + chr4_3:29712024-29712043 None:intergenic 20.0%
!! TAATCAAAATTGAGAATTTG+AGG + chr4_3:29712848-29712867 None:intergenic 20.0%
!! AAAAAAAATTGAAACTAACG+GGG + chr4_3:29712940-29712959 None:intergenic 20.0%
!! TATTGTTATGTTTATTGCTA+AGG - chr4_3:29713314-29713333 Msa0637590:intron 20.0%
!! CTTTAATATATGATATGATG+TGG - chr4_3:29713900-29713919 Msa0637590:intron 20.0%
!! TTAAACATATTGTTAACATG+GGG - chr4_3:29713941-29713960 Msa0637590:intron 20.0%
!! TAACATAATATAGAATGGAA+TGG + chr4_3:29712019-29712038 None:intergenic 20.0%
!! TTCCATTCTATATTATGTTA+TGG - chr4_3:29712019-29712038 Msa0637590:CDS 20.0%
!! ATCCATAACATAATATAGAA+TGG + chr4_3:29712024-29712043 None:intergenic 20.0%
!! TAATCAAAATTGAGAATTTG+AGG + chr4_3:29712848-29712867 None:intergenic 20.0%
!! AAAAAAAATTGAAACTAACG+GGG + chr4_3:29712940-29712959 None:intergenic 20.0%
!! TATTGTTATGTTTATTGCTA+AGG - chr4_3:29713314-29713333 Msa0637590:intron 20.0%
!! CTTTAATATATGATATGATG+TGG - chr4_3:29713900-29713919 Msa0637590:intron 20.0%
!! TTAAACATATTGTTAACATG+GGG - chr4_3:29713941-29713960 Msa0637590:intron 20.0%
! CAAAAGAAAGATAAAGACTT+TGG + chr4_3:29712236-29712255 None:intergenic 25.0%
!! TTTCTTTTGTCCAATGAAAT+AGG - chr4_3:29712247-29712266 Msa0637590:intron 25.0%
! TCTACTTGGTTAACAAAATT+TGG + chr4_3:29712607-29712626 None:intergenic 25.0%
! TCTTATATATTGCTTCTACT+TGG + chr4_3:29712621-29712640 None:intergenic 25.0%
! TAAAACAATATGCACAAATC+AGG - chr4_3:29712698-29712717 Msa0637590:intron 25.0%
! ACACTGATGTATGATTATAA+GGG - chr4_3:29712739-29712758 Msa0637590:intron 25.0%
! TTATAAGGGATTACAAATTC+AGG - chr4_3:29712753-29712772 Msa0637590:intron 25.0%
! GAATTGGAGATGATAATAAA+TGG - chr4_3:29713504-29713523 Msa0637590:intron 25.0%
! CACAATTCAAATTTCATCAT+AGG - chr4_3:29713582-29713601 Msa0637590:intron 25.0%
! GTTATTGACAAATGATTAGT+GGG + chr4_3:29713770-29713789 None:intergenic 25.0%
! AGTTATTGACAAATGATTAG+TGG + chr4_3:29713771-29713790 None:intergenic 25.0%
!! AATTTTGAATGCTTAATGGA+TGG + chr4_3:29713874-29713893 None:intergenic 25.0%
! TAAACATATTGTTAACATGG+GGG - chr4_3:29713942-29713961 Msa0637590:intron 25.0%
! CAAAAGAAAGATAAAGACTT+TGG + chr4_3:29712236-29712255 None:intergenic 25.0%
!! TTTCTTTTGTCCAATGAAAT+AGG - chr4_3:29712247-29712266 Msa0637590:intron 25.0%
! TCTACTTGGTTAACAAAATT+TGG + chr4_3:29712607-29712626 None:intergenic 25.0%
! TCTTATATATTGCTTCTACT+TGG + chr4_3:29712621-29712640 None:intergenic 25.0%
! TAAAACAATATGCACAAATC+AGG - chr4_3:29712698-29712717 Msa0637590:intron 25.0%
! ACACTGATGTATGATTATAA+GGG - chr4_3:29712739-29712758 Msa0637590:intron 25.0%
! TTATAAGGGATTACAAATTC+AGG - chr4_3:29712753-29712772 Msa0637590:intron 25.0%
! GAATTGGAGATGATAATAAA+TGG - chr4_3:29713504-29713523 Msa0637590:intron 25.0%
! CACAATTCAAATTTCATCAT+AGG - chr4_3:29713582-29713601 Msa0637590:intron 25.0%
! GTTATTGACAAATGATTAGT+GGG + chr4_3:29713770-29713789 None:intergenic 25.0%
! AGTTATTGACAAATGATTAG+TGG + chr4_3:29713771-29713790 None:intergenic 25.0%
!! AATTTTGAATGCTTAATGGA+TGG + chr4_3:29713874-29713893 None:intergenic 25.0%
! TAAACATATTGTTAACATGG+GGG - chr4_3:29713942-29713961 Msa0637590:intron 25.0%
! TTGAAACTTTTACTCCTTTG+TGG + chr4_3:29711989-29712008 None:intergenic 30.0%
GTTACAATTATCTTGATGTG+AGG - chr4_3:29712149-29712168 Msa0637590:intron 30.0%
TGATGTGAGGTAATTAACAA+AGG - chr4_3:29712162-29712181 Msa0637590:intron 30.0%
! ATTCAATTTTCTGCTCCTTA+TGG - chr4_3:29712376-29712395 Msa0637590:intron 30.0%
! TTCAATTTTCTGCTCCTTAT+GGG - chr4_3:29712377-29712396 Msa0637590:intron 30.0%
! AATTCTGATTGAGCATCTTT+TGG + chr4_3:29712488-29712507 None:intergenic 30.0%
AGAAGCAATATATAAGAGTG+AGG - chr4_3:29712624-29712643 Msa0637590:intron 30.0%
GACACTGATGTATGATTATA+AGG - chr4_3:29712738-29712757 Msa0637590:intron 30.0%
GTCATAGACTTACTGAATTA+TGG + chr4_3:29712822-29712841 None:intergenic 30.0%
! CAAAATTGAGAATTTGAGGT+TGG + chr4_3:29712844-29712863 None:intergenic 30.0%
ATCTCTCCAAATGATAGAAT+TGG - chr4_3:29713488-29713507 Msa0637590:intron 30.0%
TCATCTCCAATTCTATCATT+TGG + chr4_3:29713497-29713516 None:intergenic 30.0%
TTGTGTATGTTGAAGTTACA+TGG + chr4_3:29713567-29713586 None:intergenic 30.0%
! AATCCATTTTGTGTACGTAA+TGG - chr4_3:29713644-29713663 Msa0637590:CDS 30.0%
! ATCCATTTTGTGTACGTAAT+GGG - chr4_3:29713645-29713664 Msa0637590:CDS 30.0%
AGAAATTTAGGCATGCTAAA+GGG + chr4_3:29713738-29713757 None:intergenic 30.0%
AAGAAATTTAGGCATGCTAA+AGG + chr4_3:29713739-29713758 None:intergenic 30.0%
AAACATATTGTTAACATGGG+GGG - chr4_3:29713943-29713962 Msa0637590:intron 30.0%
! TTGAAACTTTTACTCCTTTG+TGG + chr4_3:29711989-29712008 None:intergenic 30.0%
GTTACAATTATCTTGATGTG+AGG - chr4_3:29712149-29712168 Msa0637590:intron 30.0%
TGATGTGAGGTAATTAACAA+AGG - chr4_3:29712162-29712181 Msa0637590:intron 30.0%
! ATTCAATTTTCTGCTCCTTA+TGG - chr4_3:29712376-29712395 Msa0637590:intron 30.0%
! TTCAATTTTCTGCTCCTTAT+GGG - chr4_3:29712377-29712396 Msa0637590:intron 30.0%
! AATTCTGATTGAGCATCTTT+TGG + chr4_3:29712488-29712507 None:intergenic 30.0%
AGAAGCAATATATAAGAGTG+AGG - chr4_3:29712624-29712643 Msa0637590:intron 30.0%
GACACTGATGTATGATTATA+AGG - chr4_3:29712738-29712757 Msa0637590:intron 30.0%
GTCATAGACTTACTGAATTA+TGG + chr4_3:29712822-29712841 None:intergenic 30.0%
! CAAAATTGAGAATTTGAGGT+TGG + chr4_3:29712844-29712863 None:intergenic 30.0%
ATCTCTCCAAATGATAGAAT+TGG - chr4_3:29713488-29713507 Msa0637590:intron 30.0%
TCATCTCCAATTCTATCATT+TGG + chr4_3:29713497-29713516 None:intergenic 30.0%
TTGTGTATGTTGAAGTTACA+TGG + chr4_3:29713567-29713586 None:intergenic 30.0%
! AATCCATTTTGTGTACGTAA+TGG - chr4_3:29713644-29713663 Msa0637590:CDS 30.0%
! ATCCATTTTGTGTACGTAAT+GGG - chr4_3:29713645-29713664 Msa0637590:CDS 30.0%
AGAAATTTAGGCATGCTAAA+GGG + chr4_3:29713738-29713757 None:intergenic 30.0%
AAGAAATTTAGGCATGCTAA+AGG + chr4_3:29713739-29713758 None:intergenic 30.0%
AAACATATTGTTAACATGGG+GGG - chr4_3:29713943-29713962 Msa0637590:intron 30.0%
AGATGAATCTAGCAGATCTT+TGG + chr4_3:29712128-29712147 None:intergenic 35.0%
AAAGATCTGCTAGATTCATC+TGG - chr4_3:29712127-29712146 Msa0637590:intron 35.0%
CGTTAATAGCATTCTCAACA+TGG + chr4_3:29712296-29712315 None:intergenic 35.0%
TCTTCTGTGCTGAACAAATA+GGG + chr4_3:29712321-29712340 None:intergenic 35.0%
TTCTTCTGTGCTGAACAAAT+AGG + chr4_3:29712322-29712341 None:intergenic 35.0%
TATTTGTTCAGCACAGAAGA+AGG - chr4_3:29712321-29712340 Msa0637590:intron 35.0%
TAAGGAAAGATCATCTCCAT+TGG - chr4_3:29713332-29713351 Msa0637590:CDS 35.0%
GATGGGACTTACTTAATGAT+AGG + chr4_3:29713423-29713442 None:intergenic 35.0%
! TCTATCGTGGATGCTTTTAA+TGG + chr4_3:29713622-29713641 None:intergenic 35.0%
! CAAAATGGATTTCTCTATCG+TGG + chr4_3:29713635-29713654 None:intergenic 35.0%
! TTGAATGCTTAATGGATGGA+GGG + chr4_3:29713870-29713889 None:intergenic 35.0%
! TTTGAATGCTTAATGGATGG+AGG + chr4_3:29713871-29713890 None:intergenic 35.0%
AGATGAATCTAGCAGATCTT+TGG + chr4_3:29712128-29712147 None:intergenic 35.0%
AAAGATCTGCTAGATTCATC+TGG - chr4_3:29712127-29712146 Msa0637590:intron 35.0%
CGTTAATAGCATTCTCAACA+TGG + chr4_3:29712296-29712315 None:intergenic 35.0%
TCTTCTGTGCTGAACAAATA+GGG + chr4_3:29712321-29712340 None:intergenic 35.0%
TTCTTCTGTGCTGAACAAAT+AGG + chr4_3:29712322-29712341 None:intergenic 35.0%
TATTTGTTCAGCACAGAAGA+AGG - chr4_3:29712321-29712340 Msa0637590:intron 35.0%
TAAGGAAAGATCATCTCCAT+TGG - chr4_3:29713332-29713351 Msa0637590:CDS 35.0%
GATGGGACTTACTTAATGAT+AGG + chr4_3:29713423-29713442 None:intergenic 35.0%
! TCTATCGTGGATGCTTTTAA+TGG + chr4_3:29713622-29713641 None:intergenic 35.0%
! CAAAATGGATTTCTCTATCG+TGG + chr4_3:29713635-29713654 None:intergenic 35.0%
! TTGAATGCTTAATGGATGGA+GGG + chr4_3:29713870-29713889 None:intergenic 35.0%
! TTTGAATGCTTAATGGATGG+AGG + chr4_3:29713871-29713890 None:intergenic 35.0%
! TTTGGTAGCATGGACATCTA+AGG + chr4_3:29712110-29712129 None:intergenic 40.0%
TGTCCAATGAAATAGGACTG+TGG - chr4_3:29712254-29712273 Msa0637590:intron 40.0%
CTTCTGTGCTGAACAAATAG+GGG + chr4_3:29712320-29712339 None:intergenic 40.0%
CAGCACAGAAGAAGGTAATA+TGG - chr4_3:29712329-29712348 Msa0637590:intron 40.0%
TGTGCTTACAACTGATCAAC+AGG - chr4_3:29712568-29712587 Msa0637590:intron 40.0%
CTTACAACTGATCAACAGGA+CGG - chr4_3:29712572-29712591 Msa0637590:intron 40.0%
TTACAACTGATCAACAGGAC+GGG - chr4_3:29712573-29712592 Msa0637590:intron 40.0%
GAGTGAGGATCACTTAATTG+TGG - chr4_3:29712639-29712658 Msa0637590:intron 40.0%
CAAATTCAGGCTTGTAATGC+TGG - chr4_3:29712766-29712785 Msa0637590:intron 40.0%
TGAATTATGGAGATCAACCC+AGG + chr4_3:29712809-29712828 None:intergenic 40.0%
TAGCTAGCGATAAAGGAGTT+AGG + chr4_3:29713532-29713551 None:intergenic 40.0%
TACCACTTAGCTAGCGATAA+AGG + chr4_3:29713539-29713558 None:intergenic 40.0%
GACCCATTACGTACACAAAA+TGG + chr4_3:29713650-29713669 None:intergenic 40.0%
GGGTCTCGGTTAAGAAATTT+AGG + chr4_3:29713750-29713769 None:intergenic 40.0%
! GACAAATGATTAGTGGGTCT+CGG + chr4_3:29713764-29713783 None:intergenic 40.0%
TGATGTGGTAATTAACGAGC+AGG - chr4_3:29713915-29713934 Msa0637590:intron 40.0%
GATGTGGTAATTAACGAGCA+GGG - chr4_3:29713916-29713935 Msa0637590:intron 40.0%
! TTTGGTAGCATGGACATCTA+AGG + chr4_3:29712110-29712129 None:intergenic 40.0%
TGTCCAATGAAATAGGACTG+TGG - chr4_3:29712254-29712273 Msa0637590:intron 40.0%
CTTCTGTGCTGAACAAATAG+GGG + chr4_3:29712320-29712339 None:intergenic 40.0%
CAGCACAGAAGAAGGTAATA+TGG - chr4_3:29712329-29712348 Msa0637590:intron 40.0%
TGTGCTTACAACTGATCAAC+AGG - chr4_3:29712568-29712587 Msa0637590:intron 40.0%
CTTACAACTGATCAACAGGA+CGG - chr4_3:29712572-29712591 Msa0637590:intron 40.0%
TTACAACTGATCAACAGGAC+GGG - chr4_3:29712573-29712592 Msa0637590:intron 40.0%
GAGTGAGGATCACTTAATTG+TGG - chr4_3:29712639-29712658 Msa0637590:intron 40.0%
CAAATTCAGGCTTGTAATGC+TGG - chr4_3:29712766-29712785 Msa0637590:intron 40.0%
TGAATTATGGAGATCAACCC+AGG + chr4_3:29712809-29712828 None:intergenic 40.0%
TAGCTAGCGATAAAGGAGTT+AGG + chr4_3:29713532-29713551 None:intergenic 40.0%
TACCACTTAGCTAGCGATAA+AGG + chr4_3:29713539-29713558 None:intergenic 40.0%
GACCCATTACGTACACAAAA+TGG + chr4_3:29713650-29713669 None:intergenic 40.0%
GGGTCTCGGTTAAGAAATTT+AGG + chr4_3:29713750-29713769 None:intergenic 40.0%
! GACAAATGATTAGTGGGTCT+CGG + chr4_3:29713764-29713783 None:intergenic 40.0%
TGATGTGGTAATTAACGAGC+AGG - chr4_3:29713915-29713934 Msa0637590:intron 40.0%
GATGTGGTAATTAACGAGCA+GGG - chr4_3:29713916-29713935 Msa0637590:intron 40.0%
! CTAGCAGATCTTTGGTAGCA+TGG + chr4_3:29712120-29712139 None:intergenic 45.0%
CCTCCACAGTCCTATTTCAT+TGG + chr4_3:29712260-29712279 None:intergenic 45.0%
CCAATGAAATAGGACTGTGG+AGG - chr4_3:29712257-29712276 Msa0637590:intron 45.0%
TTTCTGCTCCTTATGGGTAG+AGG - chr4_3:29712383-29712402 Msa0637590:intron 45.0%
TGTTGCTACCTCTACCCATA+AGG + chr4_3:29712394-29712413 None:intergenic 45.0%
ATTCAGGCTTGTAATGCTGG+AGG - chr4_3:29712769-29712788 Msa0637590:intron 45.0%
CTCCTTTATCGCTAGCTAAG+TGG - chr4_3:29713534-29713553 Msa0637590:intron 45.0%
!! TGTGTACGTAATGGGTCTCA+TGG - chr4_3:29713653-29713672 Msa0637590:CDS 45.0%
! TTAAAGAGGCGTAAGACGCA+CGG - chr4_3:29713821-29713840 Msa0637590:CDS 45.0%
CATATTGTTAACATGGGGGG+AGG - chr4_3:29713946-29713965 Msa0637590:intron 45.0%
! CTAGCAGATCTTTGGTAGCA+TGG + chr4_3:29712120-29712139 None:intergenic 45.0%
CCTCCACAGTCCTATTTCAT+TGG + chr4_3:29712260-29712279 None:intergenic 45.0%
CCAATGAAATAGGACTGTGG+AGG - chr4_3:29712257-29712276 Msa0637590:intron 45.0%
TTTCTGCTCCTTATGGGTAG+AGG - chr4_3:29712383-29712402 Msa0637590:intron 45.0%
TGTTGCTACCTCTACCCATA+AGG + chr4_3:29712394-29712413 None:intergenic 45.0%
ATTCAGGCTTGTAATGCTGG+AGG - chr4_3:29712769-29712788 Msa0637590:intron 45.0%
CTCCTTTATCGCTAGCTAAG+TGG - chr4_3:29713534-29713553 Msa0637590:intron 45.0%
!! TGTGTACGTAATGGGTCTCA+TGG - chr4_3:29713653-29713672 Msa0637590:CDS 45.0%
! TTAAAGAGGCGTAAGACGCA+CGG - chr4_3:29713821-29713840 Msa0637590:CDS 45.0%
CATATTGTTAACATGGGGGG+AGG - chr4_3:29713946-29713965 Msa0637590:intron 45.0%
!! AATTATCTTAATATAAATTT+AGG - chr4_3:29712914-29712933 Msa0637590:intron 5.0%
!!! ATTTATTTTTTATAGTAAAA+AGG - chr4_3:29713153-29713172 Msa0637590:CDS 5.0%
!! AATTATCTTAATATAAATTT+AGG - chr4_3:29712914-29712933 Msa0637590:intron 5.0%
!!! ATTTATTTTTTATAGTAAAA+AGG - chr4_3:29713153-29713172 Msa0637590:CDS 5.0%
AGGAAGATCAAGTCGAGCCT+GGG - chr4_3:29712789-29712808 Msa0637590:intron 50.0%
AGGAAGATCAAGTCGAGCCT+GGG - chr4_3:29712789-29712808 Msa0637590:intron 50.0%
GAGGAAGATCAAGTCGAGCC+TGG - chr4_3:29712788-29712807 Msa0637590:intron 55.0%
GAGGAAGATCAAGTCGAGCC+TGG - chr4_3:29712788-29712807 Msa0637590:intron 55.0%
TACTCTGCGTGGGTGGATGC+TGG - chr4_3:29713970-29713989 Msa0637590:intron 60.0%
TACTCTGCGTGGGTGGATGC+TGG - chr4_3:29713970-29713989 Msa0637590:intron 60.0%
TGGGGGGAGGCTACTCTGCG+TGG - chr4_3:29713959-29713978 Msa0637590:intron 70.0%
GGGGGGAGGCTACTCTGCGT+GGG - chr4_3:29713960-29713979 Msa0637590:intron 70.0%
GGGAGGCTACTCTGCGTGGG+TGG - chr4_3:29713963-29713982 Msa0637590:intron 70.0%
TGGGGGGAGGCTACTCTGCG+TGG - chr4_3:29713959-29713978 Msa0637590:intron 70.0%
GGGGGGAGGCTACTCTGCGT+GGG - chr4_3:29713960-29713979 Msa0637590:intron 70.0%
GGGAGGCTACTCTGCGTGGG+TGG - chr4_3:29713963-29713982 Msa0637590:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 29711979 29713999 29711979 ID=Msa0637590;Name=Msa0637590
chr4_3 mRNA 29711979 29713999 29711979 ID=Msa0637590-mRNA-1;Parent=Msa0637590;Name=Msa0637590-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.83|0.8|0.66|6|0|120
chr4_3 exon 29713983 29713999 29713983 ID=Msa0637590-mRNA-1:exon:7219;Parent=Msa0637590-mRNA-1
chr4_3 exon 29713808 29713888 29713808 ID=Msa0637590-mRNA-1:exon:7218;Parent=Msa0637590-mRNA-1
chr4_3 exon 29713636 29713709 29713636 ID=Msa0637590-mRNA-1:exon:7217;Parent=Msa0637590-mRNA-1
chr4_3 exon 29713318 29713388 29713318 ID=Msa0637590-mRNA-1:exon:7216;Parent=Msa0637590-mRNA-1
chr4_3 exon 29713150 29713203 29713150 ID=Msa0637590-mRNA-1:exon:7215;Parent=Msa0637590-mRNA-1
chr4_3 exon 29711979 29712041 29711979 ID=Msa0637590-mRNA-1:exon:7214;Parent=Msa0637590-mRNA-1
chr4_3 CDS 29713983 29713999 29713983 ID=Msa0637590-mRNA-1:cds;Parent=Msa0637590-mRNA-1
chr4_3 CDS 29713808 29713888 29713808 ID=Msa0637590-mRNA-1:cds;Parent=Msa0637590-mRNA-1
chr4_3 CDS 29713636 29713709 29713636 ID=Msa0637590-mRNA-1:cds;Parent=Msa0637590-mRNA-1
chr4_3 CDS 29713318 29713388 29713318 ID=Msa0637590-mRNA-1:cds;Parent=Msa0637590-mRNA-1
chr4_3 CDS 29713150 29713203 29713150 ID=Msa0637590-mRNA-1:cds;Parent=Msa0637590-mRNA-1
chr4_3 CDS 29711979 29712041 29711979 ID=Msa0637590-mRNA-1:cds;Parent=Msa0637590-mRNA-1
Gene Sequence

>Msa0637590

ATGGACACCACAAAGGATCATCAAGATGTTGTTACCTTAGATGTCCATGCTACCAAAGATCTGCTAGATTCATCTGGTTACAATTATCTTGATGTGAGGACTGTGGAGGAATTCAATAAAAGCCATGTTGAGAATGCTATTAACGTCCCCTATTTGTTCAGCACAGAAGAAGGACGGGTGAAAAATCCAAATTTTGTTAACCAAGTAGAAGCAATATATAAGAGTGAGGATCACTTAATTGTGGCTTGTAATGCTGGAGGAAGATCAAGTCGAGCCTGGGTTGATCTCCATAATTCAGGATTTAAACATATTGTTAACATGGGGGGAGGCTACTCTGCGTGGGTGGATGCTGGATTTGCA

Protein sequence

>Msa0637590

MDTTKDHQDVVTLDVHATKDLLDSSGYNYLDVRTVEEFNKSHVENAINVPYLFSTEEGRVKNPNFVNQVEAIYKSEDHLIVACNAGGRSSRAWVDLHNSGFKHIVNMGGGYSAWVDAGFA