AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1262540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262540 MtrunA17_Chr4g0066711 92.593 189 9 2 1 186 1 187 4.95e-106 301
Msa1262540 MtrunA17_Chr7g0268681 34.591 159 91 4 30 180 29 182 1.36e-24 94.7
Msa1262540 MtrunA17_Chr2g0286341 33.735 166 93 3 32 183 25 187 1.02e-21 87.4
Msa1262540 MtrunA17_Chr4g0066721 31.361 169 91 4 5 159 17 174 2.54e-19 81.3
Msa1262540 MtrunA17_Chr4g0021111 34.194 155 87 4 32 182 10 153 3.31e-18 77.4
Msa1262540 MtrunA17_Chr8g0381001 31.915 141 82 3 32 159 28 167 2.24e-16 73.6
Msa1262540 MtrunA17_Chr4g0042551 30.247 162 100 5 28 180 57 214 1.20e-15 72.0
Msa1262540 MtrunA17_Chr7g0217691 31.098 164 102 6 28 183 26 186 1.56e-14 68.6
Msa1262540 MtrunA17_Chr5g0417761 34.839 155 87 5 28 170 26 178 6.21e-14 66.6
Msa1262540 MtrunA17_Chr7g0251531 29.936 157 101 4 5 153 2 157 2.87e-13 65.1
Msa1262540 MtrunA17_Chr2g0290281 32.692 156 99 3 31 180 12 167 1.09e-11 60.5
Msa1262540 MtrunA17_Chr2g0303151 32.203 118 75 4 61 176 71 185 4.45e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262540 AT3G06390.1 47.399 173 74 3 1 156 1 173 2.60e-49 159
Msa1262540 AT4G15610.1 50.877 171 70 4 3 164 7 172 3.22e-49 158
Msa1262540 AT4G15610.2 62.766 94 35 0 71 164 23 116 1.25e-36 124
Msa1262540 AT4G15630.1 30.247 162 97 2 30 177 27 186 4.22e-20 83.6
Msa1262540 AT5G15290.1 31.618 136 84 4 31 159 29 162 8.72e-17 74.7
Msa1262540 AT4G15620.1 27.950 161 100 2 31 177 28 186 9.25e-17 74.7
Msa1262540 AT1G14160.1 29.487 156 102 4 28 177 49 202 1.71e-14 68.9
Msa1262540 AT2G36100.1 30.882 136 87 3 30 159 48 182 1.35e-12 63.9
Msa1262540 AT1G03700.1 28.758 153 97 3 32 180 11 155 1.27e-11 60.5

Find 52 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGTGTGGTACATGATTT+TGG 0.133599 8_2:+65335575 Msa1262540:three_prime_UTR
AGCTGGGAGTGTTGCATATT+TGG 0.167909 8_2:+65335164 Msa1262540:CDS
TTCTCCTCCATTTAATCTTC+TGG 0.173285 8_2:+65334997 Msa1262540:CDS
GTGGCTGCATTCTCTGTTGC+TGG 0.248825 8_2:+65334906 Msa1262540:CDS
TTGTCACTCTGTTGCTCATT+TGG 0.263577 8_2:+65335292 Msa1262540:CDS
GGCTCCGGCTTCTTCGGCTT+CGG 0.290085 8_2:+65333843 Msa1262540:CDS
CCGCATCCCAGAAGATTAAA+TGG 0.293656 8_2:-65335004 None:intergenic
GCTGGGAGTGTTGCATATTT+GGG 0.294630 8_2:+65335165 Msa1262540:CDS
AGGGAAACAACCACACTAAT+TGG 0.296811 8_2:+65335193 Msa1262540:CDS
GCTCCGGCTTCTTCGGCTTC+GGG 0.310874 8_2:+65333844 Msa1262540:CDS
TCAGTTGTTGTGATGGTTAC+TGG 0.316039 8_2:+65333931 Msa1262540:CDS
GATTAAATGGAGGAGAAGTT+TGG 0.346130 8_2:-65334991 None:intergenic
CAACTTTCTTCAAATCTACT+TGG 0.347310 8_2:-65335346 None:intergenic
TCTCCTCCATTTAATCTTCT+GGG 0.353459 8_2:+65334998 Msa1262540:CDS
TTTCTCTTGCAGGTGATGTT+GGG 0.377570 8_2:+65335117 Msa1262540:intron
GGGATATTAGCTTCAGCAAC+AGG 0.379873 8_2:+65335138 Msa1262540:CDS
AACTCCGGCTCCGGCTTCTT+CGG 0.390199 8_2:+65333837 Msa1262540:CDS
TTCAATCTAATTTATATTTG+TGG 0.392373 8_2:-65335610 None:intergenic
TCAATCTAATTTATATTTGT+GGG 0.394944 8_2:-65335609 None:intergenic
AATATCAGCTATTTATAGAA+TGG 0.413420 8_2:-65333737 None:intergenic
GCTTCAGCAACAGGCACAGC+TGG 0.420135 8_2:+65335147 Msa1262540:CDS
TCTGTAGCAGTGGGATTGTT+TGG 0.423026 8_2:+65335264 Msa1262540:CDS
TGGCTGCATTCTCTGTTGCT+GGG 0.437451 8_2:+65334907 Msa1262540:CDS
ATCATCTTCAACTCCGGCTC+CGG 0.452738 8_2:+65333828 Msa1262540:CDS
CTAAGTTTGATTTGATCCTA+AGG 0.461173 8_2:+65333881 Msa1262540:CDS
GTAAAATACAATGTGCTCCT+TGG 0.462608 8_2:-65335547 None:intergenic
TGTTGCATATTTGGGTTTGA+AGG 0.466255 8_2:+65335173 Msa1262540:CDS
ATTTCTCTTGCAGGTGATGT+TGG 0.478178 8_2:+65335116 Msa1262540:intron
AACTTTCTTCAAATCTACTT+GGG 0.490912 8_2:-65335345 None:intergenic
GTTGAAGATGATTTGTACTC+AGG 0.496735 8_2:-65333817 None:intergenic
TGCAAAACTTACACAAAGGC+TGG 0.513124 8_2:-65333997 None:intergenic
ACACCCGAAGCCGAAGAAGC+CGG 0.514862 8_2:-65333847 None:intergenic
TCTGTTGTTTGCAGCATCAG+TGG 0.515368 8_2:+65333906 Msa1262540:CDS
GGCTGGTGAGTATCTAAACT+TGG 0.516960 8_2:-65333980 None:intergenic
GAGCAAGACATGGCTTCTAC+TGG 0.517836 8_2:+65333790 Msa1262540:exon
GAAGCCGAAGAAGCCGGAGC+CGG 0.518970 8_2:-65333841 None:intergenic
GTTGCATATTTGGGTTTGAA+GGG 0.522790 8_2:+65335174 Msa1262540:CDS
TTTGAGGTTTGGCTTTCGGA+TGG 0.533858 8_2:-65334967 None:intergenic
CTGCAAACAACAGAAACCTT+AGG 0.533947 8_2:-65333897 None:intergenic
GGTGAGTATCTAAACTTGGC+TGG 0.534764 8_2:-65333976 None:intergenic
TTCTCTTGCAGGTGATGTTG+GGG 0.535972 8_2:+65335118 Msa1262540:intron
CCATTTAATCTTCTGGGATG+CGG 0.538436 8_2:+65335004 Msa1262540:CDS
AGTAGATTTGAAGAAAGTTG+TGG 0.546135 8_2:+65335349 Msa1262540:exon
TATGGGTGCCTCTGTAGCAG+TGG 0.553144 8_2:+65335254 Msa1262540:CDS
GTACAAATCATCTTCAACTC+CGG 0.560040 8_2:+65333822 Msa1262540:CDS
AAACAATCCCACTGCTACAG+AGG 0.565188 8_2:-65335262 None:intergenic
ATGGGTGCCTCTGTAGCAGT+GGG 0.565933 8_2:+65335255 Msa1262540:CDS
CTTCAGCAACAGGCACAGCT+GGG 0.583484 8_2:+65335148 Msa1262540:CDS
AGTGGCATCAGTTGTTGTGA+TGG 0.612540 8_2:+65333924 Msa1262540:CDS
TGCAAAACTTGTCATAGATG+TGG 0.673434 8_2:-65335227 None:intergenic
GTGTAATTAATTATCTACCA+AGG 0.681836 8_2:+65335530 Msa1262540:three_prime_UTR
CATCCCAGAAGATTAAATGG+AGG 0.717011 8_2:-65335001 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAGAAATTATATAAAAAAA+TGG + chr8_2:65334364-65334383 Msa1262540:intron 10.0%
!!! ATTATATAAAAAAATGGATT+TGG + chr8_2:65334370-65334389 Msa1262540:intron 10.0%
!!! AATATAATAATTTTCACTAT+TGG - chr8_2:65334523-65334542 None:intergenic 10.0%
!! GAAGAAATTATATAAAAAAA+TGG + chr8_2:65334364-65334383 Msa1262540:intron 10.0%
!!! ATTATATAAAAAAATGGATT+TGG + chr8_2:65334370-65334389 Msa1262540:intron 10.0%
!!! AATATAATAATTTTCACTAT+TGG - chr8_2:65334523-65334542 None:intergenic 10.0%
!! AAAAATTGGTTATATTAGTT+TGG - chr8_2:65333767-65333786 None:intergenic 15.0%
!! AATTAATATCAATGAGAATA+AGG - chr8_2:65334836-65334855 None:intergenic 15.0%
!! TCAATCTAATTTATATTTGT+GGG - chr8_2:65335612-65335631 None:intergenic 15.0%
!! TTCAATCTAATTTATATTTG+TGG - chr8_2:65335613-65335632 None:intergenic 15.0%
!! AAAAATTGGTTATATTAGTT+TGG - chr8_2:65333767-65333786 None:intergenic 15.0%
!! AATTAATATCAATGAGAATA+AGG - chr8_2:65334836-65334855 None:intergenic 15.0%
!! TCAATCTAATTTATATTTGT+GGG - chr8_2:65335612-65335631 None:intergenic 15.0%
!! TTCAATCTAATTTATATTTG+TGG - chr8_2:65335613-65335632 None:intergenic 15.0%
!! AATATCAGCTATTTATAGAA+TGG - chr8_2:65333740-65333759 None:intergenic 20.0%
!! ATAACTATTAAGCATCTAAT+TGG + chr8_2:65334076-65334095 Msa1262540:intron 20.0%
!! TTAGTTATTTGCAATATTCT+TGG + chr8_2:65334140-65334159 Msa1262540:intron 20.0%
!! TAGTTATTTGCAATATTCTT+GGG + chr8_2:65334141-65334160 Msa1262540:intron 20.0%
!! GAAGAAAATTGTAACATAAA+TGG - chr8_2:65334417-65334436 None:intergenic 20.0%
!!! TTATAATCACAGATATTTTG+TGG + chr8_2:65334887-65334906 Msa1262540:intron 20.0%
!! AAGGTAAAAATGGAATTAAA+AGG - chr8_2:65335049-65335068 None:intergenic 20.0%
!! ATCATTGGATTATGTTTAAA+AGG - chr8_2:65335098-65335117 None:intergenic 20.0%
!!! TATTTTACATTCTATTAGTG+TGG + chr8_2:65335562-65335581 Msa1262540:three_prime_UTR 20.0%
!! AATATCAGCTATTTATAGAA+TGG - chr8_2:65333740-65333759 None:intergenic 20.0%
!! ATAACTATTAAGCATCTAAT+TGG + chr8_2:65334076-65334095 Msa1262540:intron 20.0%
!! TTAGTTATTTGCAATATTCT+TGG + chr8_2:65334140-65334159 Msa1262540:intron 20.0%
!! TAGTTATTTGCAATATTCTT+GGG + chr8_2:65334141-65334160 Msa1262540:intron 20.0%
!! GAAGAAAATTGTAACATAAA+TGG - chr8_2:65334417-65334436 None:intergenic 20.0%
!!! TTATAATCACAGATATTTTG+TGG + chr8_2:65334887-65334906 Msa1262540:intron 20.0%
!! AAGGTAAAAATGGAATTAAA+AGG - chr8_2:65335049-65335068 None:intergenic 20.0%
!! ATCATTGGATTATGTTTAAA+AGG - chr8_2:65335098-65335117 None:intergenic 20.0%
!!! TATTTTACATTCTATTAGTG+TGG + chr8_2:65335562-65335581 Msa1262540:three_prime_UTR 20.0%
! ATAACAAACATAAAACTCAG+CGG - chr8_2:65334103-65334122 None:intergenic 25.0%
! TCATAATTTATGAGACACTA+AGG + chr8_2:65334459-65334478 Msa1262540:intron 25.0%
! TTAATTAGGAGAAAGAAAAG+CGG - chr8_2:65334675-65334694 None:intergenic 25.0%
! ATGAGAATAAGGTCTTAATA+TGG - chr8_2:65334825-65334844 None:intergenic 25.0%
! AGTATTTAGCAAGGTAAAAA+TGG - chr8_2:65335059-65335078 None:intergenic 25.0%
!! AAATTTTATGCCAATTAGTG+TGG - chr8_2:65335206-65335225 None:intergenic 25.0%
! AACTTTCTTCAAATCTACTT+GGG - chr8_2:65335348-65335367 None:intergenic 25.0%
! GTGTAATTAATTATCTACCA+AGG + chr8_2:65335530-65335549 Msa1262540:three_prime_UTR 25.0%
! ATTAAAAAAGAATGCTGTCT+TGG - chr8_2:65335643-65335662 None:intergenic 25.0%
! ATAACAAACATAAAACTCAG+CGG - chr8_2:65334103-65334122 None:intergenic 25.0%
! TCATAATTTATGAGACACTA+AGG + chr8_2:65334459-65334478 Msa1262540:intron 25.0%
! TTAATTAGGAGAAAGAAAAG+CGG - chr8_2:65334675-65334694 None:intergenic 25.0%
! ATGAGAATAAGGTCTTAATA+TGG - chr8_2:65334825-65334844 None:intergenic 25.0%
! AGTATTTAGCAAGGTAAAAA+TGG - chr8_2:65335059-65335078 None:intergenic 25.0%
!! AAATTTTATGCCAATTAGTG+TGG - chr8_2:65335206-65335225 None:intergenic 25.0%
! AACTTTCTTCAAATCTACTT+GGG - chr8_2:65335348-65335367 None:intergenic 25.0%
! GTGTAATTAATTATCTACCA+AGG + chr8_2:65335530-65335549 Msa1262540:three_prime_UTR 25.0%
! ATTAAAAAAGAATGCTGTCT+TGG - chr8_2:65335643-65335662 None:intergenic 25.0%
ATGTCTTGCTCAGTAAAAAT+TGG - chr8_2:65333781-65333800 None:intergenic 30.0%
! AATTTTTACTGAGCAAGACA+TGG + chr8_2:65333780-65333799 Msa1262540:exon 30.0%
!! CTAAGTTTGATTTGATCCTA+AGG + chr8_2:65333881-65333900 Msa1262540:CDS 30.0%
ATCATGCAAAACTTACACAA+AGG - chr8_2:65334004-65334023 None:intergenic 30.0%
! CTAGCTGATAGAATTAGTTT+CGG - chr8_2:65334253-65334272 None:intergenic 30.0%
GTATCAATCAAATGGAGAAT+TGG - chr8_2:65334653-65334672 None:intergenic 30.0%
GAATAAGGTCTTAATATGGT+GGG - chr8_2:65334821-65334840 None:intergenic 30.0%
AGAATAAGGTCTTAATATGG+TGG - chr8_2:65334822-65334841 None:intergenic 30.0%
GCGTATAATAGTATTTAGCA+AGG - chr8_2:65335068-65335087 None:intergenic 30.0%
CAACTTTCTTCAAATCTACT+TGG - chr8_2:65335349-65335368 None:intergenic 30.0%
AGTAGATTTGAAGAAAGTTG+TGG + chr8_2:65335349-65335368 Msa1262540:exon 30.0%
! ATTAGTGTGGTACATGATTT+TGG + chr8_2:65335575-65335594 Msa1262540:three_prime_UTR 30.0%
! TTAGTGTGGTACATGATTTT+GGG + chr8_2:65335576-65335595 Msa1262540:three_prime_UTR 30.0%
ATGTCTTGCTCAGTAAAAAT+TGG - chr8_2:65333781-65333800 None:intergenic 30.0%
! AATTTTTACTGAGCAAGACA+TGG + chr8_2:65333780-65333799 Msa1262540:exon 30.0%
!! CTAAGTTTGATTTGATCCTA+AGG + chr8_2:65333881-65333900 Msa1262540:CDS 30.0%
ATCATGCAAAACTTACACAA+AGG - chr8_2:65334004-65334023 None:intergenic 30.0%
! CTAGCTGATAGAATTAGTTT+CGG - chr8_2:65334253-65334272 None:intergenic 30.0%
GTATCAATCAAATGGAGAAT+TGG - chr8_2:65334653-65334672 None:intergenic 30.0%
GAATAAGGTCTTAATATGGT+GGG - chr8_2:65334821-65334840 None:intergenic 30.0%
AGAATAAGGTCTTAATATGG+TGG - chr8_2:65334822-65334841 None:intergenic 30.0%
GCGTATAATAGTATTTAGCA+AGG - chr8_2:65335068-65335087 None:intergenic 30.0%
CAACTTTCTTCAAATCTACT+TGG - chr8_2:65335349-65335368 None:intergenic 30.0%
AGTAGATTTGAAGAAAGTTG+TGG + chr8_2:65335349-65335368 Msa1262540:exon 30.0%
! ATTAGTGTGGTACATGATTT+TGG + chr8_2:65335575-65335594 Msa1262540:three_prime_UTR 30.0%
! TTAGTGTGGTACATGATTTT+GGG + chr8_2:65335576-65335595 Msa1262540:three_prime_UTR 30.0%
! GTTGAAGATGATTTGTACTC+AGG - chr8_2:65333820-65333839 None:intergenic 35.0%
GTACAAATCATCTTCAACTC+CGG + chr8_2:65333822-65333841 Msa1262540:CDS 35.0%
TTTCCTAGTAGTTCCTACTA+TGG + chr8_2:65334164-65334183 Msa1262540:intron 35.0%
ATTCCATAGTAGGAACTACT+AGG - chr8_2:65334170-65334189 None:intergenic 35.0%
GTAGTTCCTACTATGGAATA+TGG + chr8_2:65334171-65334190 Msa1262540:intron 35.0%
ACATGACCATATTCCATAGT+AGG - chr8_2:65334180-65334199 None:intergenic 35.0%
! TTTGAAGTATGCATCTCTCT+CGG + chr8_2:65334199-65334218 Msa1262540:intron 35.0%
CAGCTAGACTCAATTTCAAT+AGG + chr8_2:65334266-65334285 Msa1262540:intron 35.0%
TGAGACACTAAGGATATTGT+AGG + chr8_2:65334469-65334488 Msa1262540:intron 35.0%
GAGACACTAAGGATATTGTA+GGG + chr8_2:65334470-65334489 Msa1262540:intron 35.0%
AGACACTAAGGATATTGTAG+GGG + chr8_2:65334471-65334490 Msa1262540:intron 35.0%
GAAAAGCGGTATCAATCAAA+TGG - chr8_2:65334661-65334680 None:intergenic 35.0%
! GAAAGACTCTACTCTTTTGA+AGG + chr8_2:65334743-65334762 Msa1262540:intron 35.0%
!! CTACTCTTTTGAAGGCTATA+AGG + chr8_2:65334751-65334770 Msa1262540:intron 35.0%
! TAATATGGTGGGAACATATG+TGG - chr8_2:65334810-65334829 None:intergenic 35.0%
!!! AGAAGTTTGGTTTTGAGGTT+TGG - chr8_2:65334981-65335000 None:intergenic 35.0%
GATTAAATGGAGGAGAAGTT+TGG - chr8_2:65334994-65335013 None:intergenic 35.0%
TTCTCCTCCATTTAATCTTC+TGG + chr8_2:65334997-65335016 Msa1262540:CDS 35.0%
TCTCCTCCATTTAATCTTCT+GGG + chr8_2:65334998-65335017 Msa1262540:CDS 35.0%
AATCCAATGATTTCTCTTGC+AGG + chr8_2:65335107-65335126 Msa1262540:intron 35.0%
! TGTTGCATATTTGGGTTTGA+AGG + chr8_2:65335173-65335192 Msa1262540:CDS 35.0%
! GTTGCATATTTGGGTTTGAA+GGG + chr8_2:65335174-65335193 Msa1262540:CDS 35.0%
TGCAAAACTTGTCATAGATG+TGG - chr8_2:65335230-65335249 None:intergenic 35.0%
! ACATCTATGACAAGTTTTGC+AGG + chr8_2:65335229-65335248 Msa1262540:CDS 35.0%
GTAAAATACAATGTGCTCCT+TGG - chr8_2:65335550-65335569 None:intergenic 35.0%
! GTTGAAGATGATTTGTACTC+AGG - chr8_2:65333820-65333839 None:intergenic 35.0%
GTACAAATCATCTTCAACTC+CGG + chr8_2:65333822-65333841 Msa1262540:CDS 35.0%
TTTCCTAGTAGTTCCTACTA+TGG + chr8_2:65334164-65334183 Msa1262540:intron 35.0%
ATTCCATAGTAGGAACTACT+AGG - chr8_2:65334170-65334189 None:intergenic 35.0%
GTAGTTCCTACTATGGAATA+TGG + chr8_2:65334171-65334190 Msa1262540:intron 35.0%
ACATGACCATATTCCATAGT+AGG - chr8_2:65334180-65334199 None:intergenic 35.0%
! TTTGAAGTATGCATCTCTCT+CGG + chr8_2:65334199-65334218 Msa1262540:intron 35.0%
CAGCTAGACTCAATTTCAAT+AGG + chr8_2:65334266-65334285 Msa1262540:intron 35.0%
TGAGACACTAAGGATATTGT+AGG + chr8_2:65334469-65334488 Msa1262540:intron 35.0%
GAGACACTAAGGATATTGTA+GGG + chr8_2:65334470-65334489 Msa1262540:intron 35.0%
AGACACTAAGGATATTGTAG+GGG + chr8_2:65334471-65334490 Msa1262540:intron 35.0%
GAAAAGCGGTATCAATCAAA+TGG - chr8_2:65334661-65334680 None:intergenic 35.0%
! GAAAGACTCTACTCTTTTGA+AGG + chr8_2:65334743-65334762 Msa1262540:intron 35.0%
!! CTACTCTTTTGAAGGCTATA+AGG + chr8_2:65334751-65334770 Msa1262540:intron 35.0%
! TAATATGGTGGGAACATATG+TGG - chr8_2:65334810-65334829 None:intergenic 35.0%
!!! AGAAGTTTGGTTTTGAGGTT+TGG - chr8_2:65334981-65335000 None:intergenic 35.0%
GATTAAATGGAGGAGAAGTT+TGG - chr8_2:65334994-65335013 None:intergenic 35.0%
TTCTCCTCCATTTAATCTTC+TGG + chr8_2:65334997-65335016 Msa1262540:CDS 35.0%
TCTCCTCCATTTAATCTTCT+GGG + chr8_2:65334998-65335017 Msa1262540:CDS 35.0%
AATCCAATGATTTCTCTTGC+AGG + chr8_2:65335107-65335126 Msa1262540:intron 35.0%
! TGTTGCATATTTGGGTTTGA+AGG + chr8_2:65335173-65335192 Msa1262540:CDS 35.0%
! GTTGCATATTTGGGTTTGAA+GGG + chr8_2:65335174-65335193 Msa1262540:CDS 35.0%
TGCAAAACTTGTCATAGATG+TGG - chr8_2:65335230-65335249 None:intergenic 35.0%
! ACATCTATGACAAGTTTTGC+AGG + chr8_2:65335229-65335248 Msa1262540:CDS 35.0%
GTAAAATACAATGTGCTCCT+TGG - chr8_2:65335550-65335569 None:intergenic 35.0%
CTGCAAACAACAGAAACCTT+AGG - chr8_2:65333900-65333919 None:intergenic 40.0%
TCAGTTGTTGTGATGGTTAC+TGG + chr8_2:65333931-65333950 Msa1262540:CDS 40.0%
TGCAAAACTTACACAAAGGC+TGG - chr8_2:65334000-65334019 None:intergenic 40.0%
!! CTCTTTTGAAGGCTATAAGG+AGG + chr8_2:65334754-65334773 Msa1262540:intron 40.0%
!!! TGGTTTTGAGGTTTGGCTTT+CGG - chr8_2:65334974-65334993 None:intergenic 40.0%
CATCCCAGAAGATTAAATGG+AGG - chr8_2:65335004-65335023 None:intergenic 40.0%
!! CCATTTAATCTTCTGGGATG+CGG + chr8_2:65335004-65335023 Msa1262540:CDS 40.0%
TCACCTGCAAGAGAAATCAT+TGG - chr8_2:65335113-65335132 None:intergenic 40.0%
ATTTCTCTTGCAGGTGATGT+TGG + chr8_2:65335116-65335135 Msa1262540:intron 40.0%
TTTCTCTTGCAGGTGATGTT+GGG + chr8_2:65335117-65335136 Msa1262540:intron 40.0%
AGGGAAACAACCACACTAAT+TGG + chr8_2:65335193-65335212 Msa1262540:CDS 40.0%
! TGACAAGTTTTGCAGGCATA+TGG + chr8_2:65335236-65335255 Msa1262540:CDS 40.0%
! GACAAGTTTTGCAGGCATAT+GGG + chr8_2:65335237-65335256 Msa1262540:CDS 40.0%
TTGTCACTCTGTTGCTCATT+TGG + chr8_2:65335292-65335311 Msa1262540:CDS 40.0%
CTGCAAACAACAGAAACCTT+AGG - chr8_2:65333900-65333919 None:intergenic 40.0%
TCAGTTGTTGTGATGGTTAC+TGG + chr8_2:65333931-65333950 Msa1262540:CDS 40.0%
TGCAAAACTTACACAAAGGC+TGG - chr8_2:65334000-65334019 None:intergenic 40.0%
!! CTCTTTTGAAGGCTATAAGG+AGG + chr8_2:65334754-65334773 Msa1262540:intron 40.0%
!!! TGGTTTTGAGGTTTGGCTTT+CGG - chr8_2:65334974-65334993 None:intergenic 40.0%
CATCCCAGAAGATTAAATGG+AGG - chr8_2:65335004-65335023 None:intergenic 40.0%
!! CCATTTAATCTTCTGGGATG+CGG + chr8_2:65335004-65335023 Msa1262540:CDS 40.0%
TCACCTGCAAGAGAAATCAT+TGG - chr8_2:65335113-65335132 None:intergenic 40.0%
ATTTCTCTTGCAGGTGATGT+TGG + chr8_2:65335116-65335135 Msa1262540:intron 40.0%
TTTCTCTTGCAGGTGATGTT+GGG + chr8_2:65335117-65335136 Msa1262540:intron 40.0%
AGGGAAACAACCACACTAAT+TGG + chr8_2:65335193-65335212 Msa1262540:CDS 40.0%
! TGACAAGTTTTGCAGGCATA+TGG + chr8_2:65335236-65335255 Msa1262540:CDS 40.0%
! GACAAGTTTTGCAGGCATAT+GGG + chr8_2:65335237-65335256 Msa1262540:CDS 40.0%
TTGTCACTCTGTTGCTCATT+TGG + chr8_2:65335292-65335311 Msa1262540:CDS 40.0%
! TCTGTTGTTTGCAGCATCAG+TGG + chr8_2:65333906-65333925 Msa1262540:CDS 45.0%
AGTGGCATCAGTTGTTGTGA+TGG + chr8_2:65333924-65333943 Msa1262540:CDS 45.0%
GGTGAGTATCTAAACTTGGC+TGG - chr8_2:65333979-65333998 None:intergenic 45.0%
GGCTGGTGAGTATCTAAACT+TGG - chr8_2:65333983-65334002 None:intergenic 45.0%
!! TTTGAGGTTTGGCTTTCGGA+TGG - chr8_2:65334970-65334989 None:intergenic 45.0%
!!! GGAGGAGAAGTTTGGTTTTG+AGG - chr8_2:65334986-65335005 None:intergenic 45.0%
CCGCATCCCAGAAGATTAAA+TGG - chr8_2:65335007-65335026 None:intergenic 45.0%
TTCTCTTGCAGGTGATGTTG+GGG + chr8_2:65335118-65335137 Msa1262540:intron 45.0%
! GGGATATTAGCTTCAGCAAC+AGG + chr8_2:65335138-65335157 Msa1262540:CDS 45.0%
!! AGCTGGGAGTGTTGCATATT+TGG + chr8_2:65335164-65335183 Msa1262540:CDS 45.0%
!! GCTGGGAGTGTTGCATATTT+GGG + chr8_2:65335165-65335184 Msa1262540:CDS 45.0%
AAACAATCCCACTGCTACAG+AGG - chr8_2:65335265-65335284 None:intergenic 45.0%
TCTGTAGCAGTGGGATTGTT+TGG + chr8_2:65335264-65335283 Msa1262540:CDS 45.0%
! TCTGTTGTTTGCAGCATCAG+TGG + chr8_2:65333906-65333925 Msa1262540:CDS 45.0%
AGTGGCATCAGTTGTTGTGA+TGG + chr8_2:65333924-65333943 Msa1262540:CDS 45.0%
GGTGAGTATCTAAACTTGGC+TGG - chr8_2:65333979-65333998 None:intergenic 45.0%
GGCTGGTGAGTATCTAAACT+TGG - chr8_2:65333983-65334002 None:intergenic 45.0%
!! TTTGAGGTTTGGCTTTCGGA+TGG - chr8_2:65334970-65334989 None:intergenic 45.0%
!!! GGAGGAGAAGTTTGGTTTTG+AGG - chr8_2:65334986-65335005 None:intergenic 45.0%
CCGCATCCCAGAAGATTAAA+TGG - chr8_2:65335007-65335026 None:intergenic 45.0%
TTCTCTTGCAGGTGATGTTG+GGG + chr8_2:65335118-65335137 Msa1262540:intron 45.0%
! GGGATATTAGCTTCAGCAAC+AGG + chr8_2:65335138-65335157 Msa1262540:CDS 45.0%
!! AGCTGGGAGTGTTGCATATT+TGG + chr8_2:65335164-65335183 Msa1262540:CDS 45.0%
!! GCTGGGAGTGTTGCATATTT+GGG + chr8_2:65335165-65335184 Msa1262540:CDS 45.0%
AAACAATCCCACTGCTACAG+AGG - chr8_2:65335265-65335284 None:intergenic 45.0%
TCTGTAGCAGTGGGATTGTT+TGG + chr8_2:65335264-65335283 Msa1262540:CDS 45.0%
!! TAAATAAATAAATGATATAT+TGG - chr8_2:65334608-65334627 None:intergenic 5.0%
!! TTTGTTTATTAAATTTAATT+AGG - chr8_2:65334689-65334708 None:intergenic 5.0%
!! TAAATAAATAAATGATATAT+TGG - chr8_2:65334608-65334627 None:intergenic 5.0%
!! TTTGTTTATTAAATTTAATT+AGG - chr8_2:65334689-65334708 None:intergenic 5.0%
GAGCAAGACATGGCTTCTAC+TGG + chr8_2:65333790-65333809 Msa1262540:exon 50.0%
ATCATCTTCAACTCCGGCTC+CGG + chr8_2:65333828-65333847 Msa1262540:CDS 50.0%
TGGCTGCATTCTCTGTTGCT+GGG + chr8_2:65334907-65334926 Msa1262540:CDS 50.0%
GAGCAAGACATGGCTTCTAC+TGG + chr8_2:65333790-65333809 Msa1262540:exon 50.0%
ATCATCTTCAACTCCGGCTC+CGG + chr8_2:65333828-65333847 Msa1262540:CDS 50.0%
TGGCTGCATTCTCTGTTGCT+GGG + chr8_2:65334907-65334926 Msa1262540:CDS 50.0%
GTGGCTGCATTCTCTGTTGC+TGG + chr8_2:65334906-65334925 Msa1262540:CDS 55.0%
CTTCAGCAACAGGCACAGCT+GGG + chr8_2:65335148-65335167 Msa1262540:CDS 55.0%
TATGGGTGCCTCTGTAGCAG+TGG + chr8_2:65335254-65335273 Msa1262540:CDS 55.0%
ATGGGTGCCTCTGTAGCAGT+GGG + chr8_2:65335255-65335274 Msa1262540:CDS 55.0%
GTGGCTGCATTCTCTGTTGC+TGG + chr8_2:65334906-65334925 Msa1262540:CDS 55.0%
CTTCAGCAACAGGCACAGCT+GGG + chr8_2:65335148-65335167 Msa1262540:CDS 55.0%
TATGGGTGCCTCTGTAGCAG+TGG + chr8_2:65335254-65335273 Msa1262540:CDS 55.0%
ATGGGTGCCTCTGTAGCAGT+GGG + chr8_2:65335255-65335274 Msa1262540:CDS 55.0%
AACTCCGGCTCCGGCTTCTT+CGG + chr8_2:65333837-65333856 Msa1262540:CDS 60.0%
ACACCCGAAGCCGAAGAAGC+CGG - chr8_2:65333850-65333869 None:intergenic 60.0%
GCTTCAGCAACAGGCACAGC+TGG + chr8_2:65335147-65335166 Msa1262540:CDS 60.0%
AACTCCGGCTCCGGCTTCTT+CGG + chr8_2:65333837-65333856 Msa1262540:CDS 60.0%
ACACCCGAAGCCGAAGAAGC+CGG - chr8_2:65333850-65333869 None:intergenic 60.0%
GCTTCAGCAACAGGCACAGC+TGG + chr8_2:65335147-65335166 Msa1262540:CDS 60.0%
GAAGCCGAAGAAGCCGGAGC+CGG - chr8_2:65333844-65333863 None:intergenic 65.0%
GGCTCCGGCTTCTTCGGCTT+CGG + chr8_2:65333843-65333862 Msa1262540:CDS 65.0%
GCTCCGGCTTCTTCGGCTTC+GGG + chr8_2:65333844-65333863 Msa1262540:CDS 65.0%
GAAGCCGAAGAAGCCGGAGC+CGG - chr8_2:65333844-65333863 None:intergenic 65.0%
GGCTCCGGCTTCTTCGGCTT+CGG + chr8_2:65333843-65333862 Msa1262540:CDS 65.0%
GCTCCGGCTTCTTCGGCTTC+GGG + chr8_2:65333844-65333863 Msa1262540:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 65333735 65335686 65333735 ID=Msa1262540;Name=Msa1262540
chr8_2 mRNA 65333735 65335686 65333735 ID=Msa1262540-mRNA-1;Parent=Msa1262540;Name=Msa1262540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=64|1|1|1|1|1|3|333|186
chr8_2 exon 65333735 65334007 65333735 ID=Msa1262540-mRNA-1:exon:21127;Parent=Msa1262540-mRNA-1
chr8_2 exon 65334899 65335025 65334899 ID=Msa1262540-mRNA-1:exon:21128;Parent=Msa1262540-mRNA-1
chr8_2 exon 65335129 65335686 65335129 ID=Msa1262540-mRNA-1:exon:21129;Parent=Msa1262540-mRNA-1
chr8_2 five_prime_UTR 65333735 65333798 65333735 ID=Msa1262540-mRNA-1:five_prime_utr;Parent=Msa1262540-mRNA-1
chr8_2 CDS 65333799 65334007 65333799 ID=Msa1262540-mRNA-1:cds;Parent=Msa1262540-mRNA-1
chr8_2 CDS 65334899 65335025 65334899 ID=Msa1262540-mRNA-1:cds;Parent=Msa1262540-mRNA-1
chr8_2 CDS 65335129 65335353 65335129 ID=Msa1262540-mRNA-1:cds;Parent=Msa1262540-mRNA-1
chr8_2 three_prime_UTR 65335354 65335686 65335354 ID=Msa1262540-mRNA-1:three_prime_utr;Parent=Msa1262540-mRNA-1
Gene Sequence

>Msa1262540

ATGGCTTCTACTGGTGATCCTGAGTACAAATCATCTTCAACTCCGGCTCCGGCTTCTTCGGCTTCGGGTGTTGTTGATCACTCTAAGTTTGATTTGATCCTAAGGTTTCTGTTGTTTGCAGCATCAGTGGCATCAGTTGTTGTGATGGTTACTGGTAATCAAACAGAATATTCTCGACCAGCCAAGTTTAGATACTCACCAGCCTTTGTATATTTTGTGGCTGCATTCTCTGTTGCTGGGCTTTATAGTATCATTACAACTTTTGTATCACTCTCTGCCATCCGAAAGCCAAACCTCAAAACCAAACTTCTCCTCCATTTAATCTTCTGGGATGCGGTGATGTTGGGGATATTAGCTTCAGCAACAGGCACAGCTGGGAGTGTTGCATATTTGGGTTTGAAGGGAAACAACCACACTAATTGGCATAAAATTTGCCACATCTATGACAAGTTTTGCAGGCATATGGGTGCCTCTGTAGCAGTGGGATTGTTTGGTAGCATTGTCACTCTGTTGCTCATTTGGATTTCAGCTCACAGCATTCATAGTCGAGTTCCCAAGTAG

Protein sequence

>Msa1262540

MASTGDPEYKSSSTPAPASSASGVVDHSKFDLILRFLLFAASVASVVVMVTGNQTEYSRPAKFRYSPAFVYFVAAFSVAGLYSIITTFVSLSAIRKPNLKTKLLLHLIFWDAVMLGILASATGTAGSVAYLGLKGNNHTNWHKICHIYDKFCRHMGASVAVGLFGSIVTLLLIWISAHSIHSRVPK*