Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135030 | XP_013469853.1 | 95.317 | 363 | 17 | 0 | 33 | 395 | 1 | 363 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135030 | A0A072VQG9 | 95.317 | 363 | 17 | 0 | 33 | 395 | 1 | 363 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011410 | Msa0135030 | -0.800695 | 1.277691e-48 | -8.615850e-47 |
| Msa0027020 | Msa0135030 | -0.800792 | 1.220769e-48 | -8.615850e-47 |
| Msa0040470 | Msa0135030 | 0.908982 | 9.411472e-82 | -8.615850e-47 |
| Msa0042520 | Msa0135030 | -0.806641 | 7.452544e-50 | -8.615850e-47 |
| Msa0046020 | Msa0135030 | -0.802122 | 6.517630e-49 | -8.615850e-47 |
| Msa0093360 | Msa0135030 | -0.801110 | 1.050812e-48 | -8.615850e-47 |
| Msa0116780 | Msa0135030 | -0.809769 | 1.606607e-50 | -8.615850e-47 |
| Msa0117650 | Msa0135030 | 0.807149 | 5.820892e-50 | -8.615850e-47 |
| Msa0129770 | Msa0135030 | 0.806319 | 8.716272e-50 | -8.615850e-47 |
| Msa0129820 | Msa0135030 | -0.814050 | 1.876365e-51 | -8.615850e-47 |
| Msa0130500 | Msa0135030 | 0.810098 | 1.364862e-50 | -8.615850e-47 |
| Msa0135030 | Msa0154880 | -0.802062 | 6.702920e-49 | -8.615850e-47 |
| Msa0135030 | Msa0167160 | -0.805940 | 1.047472e-49 | -8.615850e-47 |
| Msa0135030 | Msa0167570 | -0.805457 | 1.322991e-49 | -8.615850e-47 |
| Msa0135030 | Msa0179570 | 0.804368 | 2.233946e-49 | -8.615850e-47 |
| Msa0135030 | Msa0193950 | 0.841331 | 5.071527e-58 | -8.615850e-47 |
| Msa0135030 | Msa0227130 | -0.808728 | 2.685396e-50 | -8.615850e-47 |
| Msa0135030 | Msa0235820 | 0.865665 | 5.007966e-65 | -8.615850e-47 |
| Msa0135030 | Msa0237690 | -0.800196 | 1.614515e-48 | -8.615850e-47 |
| Msa0135030 | Msa0266330 | -0.802437 | 5.613877e-49 | -8.615850e-47 |
| Msa0135030 | Msa0268200 | -0.801778 | 7.668941e-49 | -8.615850e-47 |
| Msa0135030 | Msa0268350 | -0.801193 | 1.010751e-48 | -8.615850e-47 |
| Msa0135030 | Msa0268360 | -0.804259 | 2.353662e-49 | -8.615850e-47 |
| Msa0135030 | Msa0268440 | -0.810837 | 9.448534e-51 | -8.615850e-47 |
| Msa0135030 | Msa0268520 | -0.800975 | 1.119614e-48 | -8.615850e-47 |
| Msa0135030 | Msa0268710 | -0.807791 | 4.253481e-50 | -8.615850e-47 |
| Msa0135030 | Msa0273400 | 0.802247 | 6.143089e-49 | -8.615850e-47 |
| Msa0135030 | Msa0283620 | 0.821167 | 4.662977e-53 | -8.615850e-47 |
| Msa0135030 | Msa0285890 | 0.820838 | 5.551721e-53 | -8.615850e-47 |
| Msa0135030 | Msa0310270 | -0.802889 | 4.528627e-49 | -8.615850e-47 |
| Msa0135030 | Msa0314240 | 0.835510 | 1.609180e-56 | -8.615850e-47 |
| Msa0135030 | Msa0320170 | 0.809488 | 1.845706e-50 | -8.615850e-47 |
| Msa0135030 | Msa0341950 | -0.800790 | 1.221492e-48 | -8.615850e-47 |
| Msa0135030 | Msa0367350 | 0.807195 | 5.690754e-50 | -8.615850e-47 |
| Msa0135030 | Msa0437730 | -0.821166 | 4.663844e-53 | -8.615850e-47 |
| Msa0135030 | Msa0529110 | 0.820760 | 5.785520e-53 | -8.615850e-47 |
| Msa0135030 | Msa0534610 | 0.808387 | 3.175462e-50 | -8.615850e-47 |
| Msa0135030 | Msa0550990 | -0.814662 | 1.374255e-51 | -8.615850e-47 |
| Msa0135030 | Msa0556690 | -0.821695 | 3.522287e-53 | -8.615850e-47 |
| Msa0135030 | Msa0556760 | -0.818879 | 1.556409e-52 | -8.615850e-47 |
| Msa0135030 | Msa0563860 | 0.815219 | 1.034251e-51 | -8.615850e-47 |
| Msa0135030 | Msa0565430 | -0.801389 | 9.216258e-49 | -8.615850e-47 |
| Msa0135030 | Msa0582550 | -0.805806 | 1.117483e-49 | -8.615850e-47 |
| Msa0135030 | Msa0588040 | 0.800108 | 1.682377e-48 | -8.615850e-47 |
| Msa0135030 | Msa0590620 | -0.817614 | 3.010552e-52 | -8.615850e-47 |
| Msa0135030 | Msa0590810 | 0.810703 | 1.010436e-50 | -8.615850e-47 |
| Msa0135030 | Msa0595270 | 0.812605 | 3.897806e-51 | -8.615850e-47 |
| Msa0135030 | Msa0597800 | 0.820537 | 6.508253e-53 | -8.615850e-47 |
| Msa0135030 | Msa0597820 | 0.820500 | 6.637373e-53 | -8.615850e-47 |
| Msa0135030 | Msa0603310 | 0.805093 | 1.576747e-49 | -8.615850e-47 |
| Msa0135030 | Msa0606340 | -0.801075 | 1.068407e-48 | -8.615850e-47 |
| Msa0135030 | Msa0637590 | 0.849477 | 3.154162e-60 | -8.615850e-47 |
| Msa0135030 | Msa0637700 | 0.813122 | 3.003138e-51 | -8.615850e-47 |
| Msa0135030 | Msa0644330 | 0.806079 | 9.788734e-50 | -8.615850e-47 |
| Msa0135030 | Msa0644340 | 0.821983 | 3.020403e-53 | -8.615850e-47 |
| Msa0135030 | Msa0694770 | -0.815006 | 1.153032e-51 | -8.615850e-47 |
| Msa0135030 | Msa0695250 | -0.804016 | 2.644332e-49 | -8.615850e-47 |
| Msa0135030 | Msa0719600 | 0.805138 | 1.542586e-49 | -8.615850e-47 |
| Msa0135030 | Msa0739820 | -0.815497 | 8.968655e-52 | -8.615850e-47 |
| Msa0135030 | Msa0745270 | -0.807187 | 5.714610e-50 | -8.615850e-47 |
| Msa0135030 | Msa0793130 | -0.800469 | 1.420346e-48 | -8.615850e-47 |
| Msa0135030 | Msa0800150 | 0.803500 | 3.384505e-49 | -8.615850e-47 |
| Msa0135030 | Msa0881880 | -0.809508 | 1.827834e-50 | -8.615850e-47 |
| Msa0135030 | Msa0882480 | -0.805237 | 1.471005e-49 | -8.615850e-47 |
| Msa0135030 | Msa0901270 | 0.826650 | 2.415310e-54 | -8.615850e-47 |
| Msa0135030 | Msa0905570 | 0.814555 | 1.451733e-51 | -8.615850e-47 |
| Msa0135030 | Msa0931180 | -0.800039 | 1.737762e-48 | -8.615850e-47 |
| Msa0135030 | Msa0944720 | -0.810760 | 9.819894e-51 | -8.615850e-47 |
| Msa0135030 | Msa0945160 | -0.801479 | 8.830282e-49 | -8.615850e-47 |
| Msa0135030 | Msa0966580 | 0.808059 | 3.730271e-50 | -8.615850e-47 |
| Msa0135030 | Msa0966590 | 0.841727 | 3.986886e-58 | -8.615850e-47 |
| Msa0135030 | Msa0973850 | 0.803496 | 3.391012e-49 | -8.615850e-47 |
| Msa0135030 | Msa0983690 | -0.812420 | 4.277118e-51 | -8.615850e-47 |
| Msa0135030 | Msa1001120 | 0.827516 | 1.498289e-54 | -8.615850e-47 |
| Msa0135030 | Msa1010900 | -0.858777 | 6.524653e-63 | -8.615850e-47 |
| Msa0135030 | Msa1031190 | -0.801050 | 1.081152e-48 | -8.615850e-47 |
| Msa0135030 | Msa1035050 | 0.800843 | 1.191462e-48 | -8.615850e-47 |
| Msa0135030 | Msa1041570 | -0.801727 | 7.855352e-49 | -8.615850e-47 |
| Msa0135030 | Msa1058260 | 0.808223 | 3.442375e-50 | -8.615850e-47 |
| Msa0135030 | Msa1058280 | 0.800986 | 1.113879e-48 | -8.615850e-47 |
| Msa0135030 | Msa1070370 | -0.800445 | 1.436382e-48 | -8.615850e-47 |
| Msa0135030 | Msa1086030 | -0.808114 | 3.630599e-50 | -8.615850e-47 |
| Msa0135030 | Msa1086040 | -0.803367 | 3.605690e-49 | -8.615850e-47 |
| Msa0135030 | Msa1086310 | -0.802140 | 6.461321e-49 | -8.615850e-47 |
| Msa0135030 | Msa1086420 | -0.804723 | 1.883514e-49 | -8.615850e-47 |
| Msa0135030 | Msa1086500 | -0.817068 | 3.995008e-52 | -8.615850e-47 |
| Msa0135030 | Msa1089990 | 0.822080 | 2.868077e-53 | -8.615850e-47 |
| Msa0135030 | Msa1107220 | 0.807034 | 6.154495e-50 | -8.615850e-47 |
| Msa0135030 | Msa1129510 | -0.804631 | 1.969090e-49 | -8.615850e-47 |
| Msa0135030 | Msa1130150 | -0.804858 | 1.765766e-49 | -8.615850e-47 |
| Msa0135030 | Msa1154060 | 0.800870 | 1.176776e-48 | -8.615850e-47 |
| Msa0135030 | Msa1197740 | -0.812399 | 4.324017e-51 | -8.615850e-47 |
| Msa0135030 | Msa1223710 | 0.831347 | 1.757213e-55 | -8.615850e-47 |
| Msa0135030 | Msa1247200 | -0.808308 | 3.301924e-50 | -8.615850e-47 |
| Msa0135030 | Msa1251440 | -0.809990 | 1.439479e-50 | -8.615850e-47 |
| Msa0135030 | Msa1255480 | -0.802774 | 4.782317e-49 | -8.615850e-47 |
| Msa0135030 | Msa1264300 | -0.802841 | 4.632905e-49 | -8.615850e-47 |
| Msa0135030 | Msa1269200 | 0.802904 | 4.495213e-49 | -8.615850e-47 |
| Msa0135030 | Msa1315480 | 0.803766 | 2.980267e-49 | -8.615850e-47 |
| Msa0135030 | Msa1325560 | -0.815650 | 8.293433e-52 | -8.615850e-47 |
| Msa0135030 | Msa1334350 | -0.804181 | 2.443370e-49 | -8.615850e-47 |
| Msa0135030 | Msa1372460 | -0.806072 | 9.824774e-50 | -8.615850e-47 |
| Msa0135030 | Msa1373420 | -0.800191 | 1.618330e-48 | -8.615850e-47 |
| Msa0135030 | Msa1389170 | 0.813067 | 3.087549e-51 | -8.615850e-47 |
| Msa0135030 | Msa1402340 | -0.805582 | 1.245320e-49 | -8.615850e-47 |
| Msa0135030 | Msa1405530 | 0.814666 | 1.371918e-51 | -8.615850e-47 |
| Msa0135030 | Msa1415510 | -0.802230 | 6.191594e-49 | -8.615850e-47 |
| Msa0135030 | Msa1434860 | -0.801405 | 9.145356e-49 | -8.615850e-47 |
| Msa0135030 | Msa1452230 | -0.817033 | 4.067541e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135030 | MtrunA17_Chr1g0205481 | 95.055 | 364 | 17 | 1 | 33 | 395 | 1 | 364 | 0.0 | 713 |
| Msa0135030 | MtrunA17_Chr1g0205491 | 81.044 | 364 | 67 | 2 | 33 | 394 | 1 | 364 | 0.0 | 602 |
| Msa0135030 | MtrunA17_Chr1g0160271 | 70.055 | 364 | 70 | 2 | 33 | 395 | 1 | 326 | 0.0 | 505 |
| Msa0135030 | MtrunA17_Chr1g0160261 | 57.604 | 217 | 41 | 1 | 84 | 300 | 1 | 166 | 1.35e-71 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135030 | AT3G54970.1 | 47.934 | 363 | 171 | 7 | 33 | 390 | 1 | 350 | 6.04e-105 | 314 |
| Msa0135030 | AT3G54970.4 | 48.718 | 312 | 145 | 6 | 84 | 390 | 1 | 302 | 9.91e-87 | 266 |
| Msa0135030 | AT3G54970.6 | 48.837 | 301 | 137 | 6 | 33 | 329 | 1 | 288 | 5.09e-85 | 261 |
| Msa0135030 | AT3G54970.2 | 49.000 | 300 | 136 | 6 | 33 | 328 | 1 | 287 | 5.81e-85 | 261 |
| Msa0135030 | AT3G54970.5 | 45.956 | 272 | 130 | 6 | 33 | 300 | 1 | 259 | 2.00e-67 | 214 |
| Msa0135030 | AT3G54970.3 | 50.000 | 250 | 111 | 5 | 84 | 329 | 1 | 240 | 8.04e-67 | 213 |
Find 101 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTTGTTACTGGTAATT+TGG | 0.120632 | 1_3:+66576127 | Msa0135030:CDS |
| AGTTTCCAAGCTGGCAAATT+TGG | 0.216666 | 1_3:-66576014 | None:intergenic |
| CATGTACATATGTTACTTAT+TGG | 0.218165 | 1_3:-66578720 | None:intergenic |
| ACTTATGTTCCTCCTCAATT+TGG | 0.238078 | 1_3:+66576224 | Msa0135030:CDS |
| TTCCTCCTCAATTTGGTATT+CGG | 0.238577 | 1_3:+66576231 | Msa0135030:CDS |
| GTGCTTCATGCTTGATGTTT+TGG | 0.241820 | 1_3:+66575886 | Msa0135030:CDS |
| GGGAAAGCCCCGTCTGATTA+TGG | 0.267527 | 1_3:+66577260 | Msa0135030:CDS |
| TATCTGTGTTTGAATAAATT+AGG | 0.281711 | 1_3:+66579108 | Msa0135030:three_prime_UTR |
| ATCAGTGATGGTGTTCTTCC+AGG | 0.297425 | 1_3:+66577317 | Msa0135030:CDS |
| ATCATTACAACTCTTGTTAC+TGG | 0.301146 | 1_3:+66576119 | Msa0135030:CDS |
| TCCTCCTCAATTTGGTATTC+GGG | 0.303663 | 1_3:+66576232 | Msa0135030:CDS |
| GCAACATGCAGATAGTATTC+AGG | 0.308908 | 1_3:+66578214 | Msa0135030:CDS |
| TATAGGTAAATCAACTTCTT+AGG | 0.310327 | 1_3:+66578941 | Msa0135030:three_prime_UTR |
| CATGGTCAAAACATGAAATC+TGG | 0.311226 | 1_3:+66577693 | Msa0135030:CDS |
| AAACCTGGAAGGATATATTA+TGG | 0.312262 | 1_3:+66578267 | Msa0135030:CDS |
| ATGGTGAACATTTGGCTGTT+GGG | 0.313465 | 1_3:+66576258 | Msa0135030:CDS |
| ACATATGTTTGCTTAATTAG+AGG | 0.317335 | 1_3:-66578994 | None:intergenic |
| TTTCATCCCAGCAAAGGTTT+AGG | 0.328982 | 1_3:-66578751 | None:intergenic |
| GGTCCATAATATATCCTTCC+AGG | 0.346055 | 1_3:-66578270 | None:intergenic |
| GACACTTGTTAATGATTCAT+TGG | 0.350975 | 1_3:+66576046 | Msa0135030:CDS |
| ACTAGTTGGCGTATTATTCC+TGG | 0.368986 | 1_3:-66577335 | None:intergenic |
| TGAAGATCCTAAACCTTTGC+TGG | 0.374367 | 1_3:+66578744 | Msa0135030:exon |
| ATCTACTCGTTGAGAAACTA+TGG | 0.381263 | 1_3:-66578833 | None:intergenic |
| TCGGGGAAATGGTGAACATT+TGG | 0.391554 | 1_3:+66576250 | Msa0135030:CDS |
| AAACCTTTGCTGGGATGAAA+TGG | 0.395756 | 1_3:+66578754 | Msa0135030:three_prime_UTR |
| CAATTTGGTATTCGGGGAAA+TGG | 0.396980 | 1_3:+66576239 | Msa0135030:CDS |
| GTCTGTAACTGTGCTATAAC+TGG | 0.400062 | 1_3:+66579085 | Msa0135030:three_prime_UTR |
| CAGACATCATATCGGTAAAC+TGG | 0.400792 | 1_3:-66578873 | None:intergenic |
| TGTCACCAAATTTGCCAGCT+TGG | 0.405069 | 1_3:+66576009 | Msa0135030:CDS |
| TAGGATTCGGTTTCCGATGA+TGG | 0.405731 | 1_3:+66577239 | Msa0135030:intron |
| TTTAAGATATCTCTTCAGTA+AGG | 0.413390 | 1_3:+66575239 | Msa0135030:CDS |
| GGATATATTATGGACCAAAA+AGG | 0.414457 | 1_3:+66578277 | Msa0135030:CDS |
| GAACTGTTGCTGTCTTATAA+TGG | 0.422416 | 1_3:+66576547 | Msa0135030:CDS |
| TGCACTTGTGCAGGGTATGC+AGG | 0.429202 | 1_3:+66577636 | Msa0135030:intron |
| GGTTATGGAGAAAGCAACTT+TGG | 0.430081 | 1_3:+66578689 | Msa0135030:CDS |
| CAGCTGCAAAATATTCAGAT+TGG | 0.435154 | 1_3:+66576300 | Msa0135030:CDS |
| AAACAGAAACAAAATAATAT+AGG | 0.436029 | 1_3:+66578924 | Msa0135030:three_prime_UTR |
| ATGTTGCTAACATGGCCTTT+TGG | 0.436630 | 1_3:-66578970 | None:intergenic |
| GTCTTTCTTGAAGCTCATCC+AGG | 0.445380 | 1_3:+66575300 | Msa0135030:CDS |
| AGACACACAATCATAAATCT+AGG | 0.451560 | 1_3:-66579066 | None:intergenic |
| AGCTGCAAAATATTCAGATT+GGG | 0.452477 | 1_3:+66576301 | Msa0135030:CDS |
| TTAGGATAAAACAGAATTTG+TGG | 0.457122 | 1_3:+66579126 | Msa0135030:three_prime_UTR |
| CTAATTAAGCAAACATATGT+TGG | 0.461263 | 1_3:+66578997 | Msa0135030:three_prime_UTR |
| AATGGTGAACATTTGGCTGT+TGG | 0.463903 | 1_3:+66576257 | Msa0135030:CDS |
| ATGTATACGCCAACTGAAGC+GGG | 0.466676 | 1_3:-66578802 | None:intergenic |
| TGGTGAACATTTGGCTGTTG+GGG | 0.470923 | 1_3:+66576259 | Msa0135030:CDS |
| TCTTGTTACTGGTAATTTGG+AGG | 0.471836 | 1_3:+66576130 | Msa0135030:CDS |
| AATGGTGATCAAATACTTGA+AGG | 0.473996 | 1_3:+66576565 | Msa0135030:CDS |
| GGAAGAACACCATCACTGAT+AGG | 0.475333 | 1_3:-66577314 | None:intergenic |
| CAAAATATTCAGATTGGGTA+AGG | 0.485171 | 1_3:+66576306 | Msa0135030:CDS |
| GAGTAAATGCAGGATGGACC+AGG | 0.497705 | 1_3:+66578368 | Msa0135030:intron |
| AGGATTCGGTTTCCGATGAT+GGG | 0.501749 | 1_3:+66577240 | Msa0135030:intron |
| TAATTAAGCAAACATATGTT+GGG | 0.506412 | 1_3:+66578998 | Msa0135030:three_prime_UTR |
| AACAACTTAACGAATAAGTC+AGG | 0.506651 | 1_3:+66578896 | Msa0135030:three_prime_UTR |
| GATGATCACAACTTTAATCC+AGG | 0.513020 | 1_3:+66578391 | Msa0135030:CDS |
| ATGGTCAAAACATGAAATCT+GGG | 0.513865 | 1_3:+66577694 | Msa0135030:CDS |
| CTTCTTAGGCCACCTCCAAA+AGG | 0.515254 | 1_3:+66578955 | Msa0135030:three_prime_UTR |
| TGTTAATGATTCATTGGAGA+AGG | 0.516406 | 1_3:+66576052 | Msa0135030:CDS |
| ATGGAGAAAGCAACTTTGGA+AGG | 0.520760 | 1_3:+66578693 | Msa0135030:CDS |
| TTAGAGGCATGTTGCTAACA+TGG | 0.524435 | 1_3:-66578978 | None:intergenic |
| GTTTCTCAACGAGTAGATGA+TGG | 0.529115 | 1_3:+66578838 | Msa0135030:three_prime_UTR |
| TGATGCTGGTCCGATCTGAT+TGG | 0.534555 | 1_3:+66579033 | Msa0135030:three_prime_UTR |
| TGGGCTGATTGCCATTCTGT+TGG | 0.539164 | 1_3:-66578239 | None:intergenic |
| GTCGAGAAGTTGCTCCATCA+TGG | 0.539467 | 1_3:+66577675 | Msa0135030:CDS |
| AAGTTGTTCAGACATCATAT+CGG | 0.542791 | 1_3:-66578881 | None:intergenic |
| ATGCAGGATTAGGAAGACTC+TGG | 0.555761 | 1_3:+66576498 | Msa0135030:intron |
| TGCAATGCAAGTTTCCAAGC+TGG | 0.556576 | 1_3:-66576023 | None:intergenic |
| AGCAACAGTTCTGTCACTGA+TGG | 0.558246 | 1_3:-66576535 | None:intergenic |
| TTAAGATATCTCTTCAGTAA+GGG | 0.558486 | 1_3:+66575240 | Msa0135030:CDS |
| TTTCCCCGAATACCAAATTG+AGG | 0.562586 | 1_3:-66576236 | None:intergenic |
| AGATATCTTAAACTTGACAT+TGG | 0.564311 | 1_3:-66575228 | None:intergenic |
| AACCATACTCAAGTACTAGT+TGG | 0.567061 | 1_3:-66577349 | None:intergenic |
| CAATAAGTAACATATGTACA+TGG | 0.567230 | 1_3:+66578721 | Msa0135030:CDS |
| TGTCCATTTCATCCCAGCAA+AGG | 0.567939 | 1_3:-66578757 | None:intergenic |
| ATGTCATTGCAGATAGCTTG+AGG | 0.568100 | 1_3:+66578186 | Msa0135030:intron |
| AGACGGGGCTTTCCCATCAT+CGG | 0.568285 | 1_3:-66577252 | None:intergenic |
| ATTAAAGTTGTGATCATCCC+TGG | 0.570286 | 1_3:-66578386 | None:intergenic |
| TCAGATTTAAATATGAGTTG+AGG | 0.570431 | 1_3:-66575963 | None:intergenic |
| TGCAGGGTATGCAGGAGTGA+AGG | 0.571410 | 1_3:+66577644 | Msa0135030:intron |
| AATCAGCCCATTCTAAAACC+TGG | 0.574405 | 1_3:+66578252 | Msa0135030:CDS |
| GTATTCAGGTTCCAACAGAA+TGG | 0.575665 | 1_3:+66578228 | Msa0135030:CDS |
| AATGTATACGCCAACTGAAG+CGG | 0.583333 | 1_3:-66578803 | None:intergenic |
| AACAGTTCTGTCACTGATGG+AGG | 0.583762 | 1_3:-66576532 | None:intergenic |
| CCTCCTCAATTTGGTATTCG+GGG | 0.594882 | 1_3:+66576233 | Msa0135030:CDS |
| AGCCCATTCTAAAACCTGGA+AGG | 0.604355 | 1_3:+66578256 | Msa0135030:CDS |
| GAACATCTGAGGTGTGTGAA+AGG | 0.607334 | 1_3:-66575266 | None:intergenic |
| GAAGATCCTAAACCTTTGCT+GGG | 0.615855 | 1_3:+66578745 | Msa0135030:exon |
| CAGACAGCTCCTATCAGTGA+TGG | 0.620267 | 1_3:+66577305 | Msa0135030:CDS |
| ATGGAGCAACTTCTCGACAT+GGG | 0.621778 | 1_3:-66577670 | None:intergenic |
| GATGGAGCAACTTCTCGACA+TGG | 0.624453 | 1_3:-66577671 | None:intergenic |
| TGTATACGCCAACTGAAGCG+GGG | 0.639314 | 1_3:-66578801 | None:intergenic |
| GCTGGCAAATTTGGTGACAA+TGG | 0.641423 | 1_3:-66576005 | None:intergenic |
| CCCCGAATACCAAATTGAGG+AGG | 0.643632 | 1_3:-66576233 | None:intergenic |
| GGTGAACATTTGGCTGTTGG+GGG | 0.652013 | 1_3:+66576260 | Msa0135030:CDS |
| GTATACGCCAACTGAAGCGG+GGG | 0.660242 | 1_3:-66578800 | None:intergenic |
| CAGTTACAGACCAATCAGAT+CGG | 0.662133 | 1_3:-66579043 | None:intergenic |
| AGTAAATGCAGGATGGACCA+GGG | 0.672480 | 1_3:+66578369 | Msa0135030:intron |
| ACACACCTCAGATGTTCCTG+CGG | 0.686527 | 1_3:+66575272 | Msa0135030:CDS |
| GTCAAAACATGAAATCTGGG+AGG | 0.703539 | 1_3:+66577697 | Msa0135030:CDS |
| TTTATTTCCATAATCAGACG+GGG | 0.704888 | 1_3:-66577267 | None:intergenic |
| TGCATGTGAGACTATATCTG+AGG | 0.711093 | 1_3:+66576160 | Msa0135030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTATCTTTTGTTAT+TGG | + | chr1_3:66575545-66575564 | Msa0135030:intron | 10.0% |
| !! | TTACTTTATACTTATTTATA+TGG | + | chr1_3:66577171-66577190 | Msa0135030:intron | 10.0% |
| !!! | TAATTTATTTCTATAACTTT+TGG | - | chr1_3:66577542-66577561 | None:intergenic | 10.0% |
| !! | TAACTTATATTAGAACAATT+TGG | + | chr1_3:66575521-66575540 | Msa0135030:intron | 15.0% |
| !!! | GGTTTTTAATCATTATAAAT+AGG | - | chr1_3:66576870-66576889 | None:intergenic | 15.0% |
| !! | TTGTAAATAACATAAAATTC+TGG | - | chr1_3:66577456-66577475 | None:intergenic | 15.0% |
| !!! | GAATTTTATGTTATTTACAA+TGG | + | chr1_3:66577456-66577475 | Msa0135030:intron | 15.0% |
| !!! | ATATTATTTTGTTTCTGTTT+TGG | - | chr1_3:66578924-66578943 | None:intergenic | 15.0% |
| !! | AAACAGAAACAAAATAATAT+AGG | + | chr1_3:66578924-66578943 | Msa0135030:three_prime_UTR | 15.0% |
| !!! | CAAAATTTGAGATAATTACA+GGG | - | chr1_3:66575667-66575686 | None:intergenic | 20.0% |
| !!! | ACAAAATTTGAGATAATTAC+AGG | - | chr1_3:66575668-66575687 | None:intergenic | 20.0% |
| !!! | TCAACTTTTTTTTCTTTTTC+AGG | + | chr1_3:66575834-66575853 | Msa0135030:intron | 20.0% |
| !! | ACTGTTAGAATATTAAAGTA+TGG | - | chr1_3:66576777-66576796 | None:intergenic | 20.0% |
| !! | TTAATCATTATAAATAGGCA+TGG | - | chr1_3:66576865-66576884 | None:intergenic | 20.0% |
| !! | AGTAAATTCCTACTATTATT+TGG | + | chr1_3:66576927-66576946 | Msa0135030:intron | 20.0% |
| !! | GTAAATTCCTACTATTATTT+GGG | + | chr1_3:66576928-66576947 | Msa0135030:intron | 20.0% |
| !! | ATAAACAGAATTTAAACCAA+TGG | - | chr1_3:66577002-66577021 | None:intergenic | 20.0% |
| !!! | TTTTTATTTCCATAATCAGA+CGG | - | chr1_3:66577272-66577291 | None:intergenic | 20.0% |
| !! | ATACTATAAAGATGTTTCAT+TGG | - | chr1_3:66577567-66577586 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTAGTCTTACTG+AGG | + | chr1_3:66577758-66577777 | Msa0135030:intron | 20.0% |
| !! | AAATAACCAAACTTGTAAAT+AGG | - | chr1_3:66578040-66578059 | None:intergenic | 20.0% |
| !!! | TTTATTGGTTTTGTTAACTT+GGG | + | chr1_3:66578158-66578177 | Msa0135030:intron | 20.0% |
| !! | AAGTAGTAAATAAATTTACC+TGG | - | chr1_3:66578412-66578431 | None:intergenic | 20.0% |
| !!! | GTTTTATAATTGCAAATGTT+GGG | - | chr1_3:66578640-66578659 | None:intergenic | 20.0% |
| !! | TAATTAAGCAAACATATGTT+GGG | + | chr1_3:66578998-66579017 | Msa0135030:three_prime_UTR | 20.0% |
| !! | TATCTGTGTTTGAATAAATT+AGG | + | chr1_3:66579108-66579127 | Msa0135030:three_prime_UTR | 20.0% |
| ! | AGATATCTTAAACTTGACAT+TGG | - | chr1_3:66575231-66575250 | None:intergenic | 25.0% |
| !! | TTTAAGATATCTCTTCAGTA+AGG | + | chr1_3:66575239-66575258 | Msa0135030:CDS | 25.0% |
| ! | TTAAGATATCTCTTCAGTAA+GGG | + | chr1_3:66575240-66575259 | Msa0135030:CDS | 25.0% |
| ! | TCATAAATTAACCAGAGAAA+GGG | - | chr1_3:66575381-66575400 | None:intergenic | 25.0% |
| ! | GAAATAAGTTGTACAGATTA+TGG | - | chr1_3:66575465-66575484 | None:intergenic | 25.0% |
| !!! | ACAAAAGTGCATGTTTTTAA+TGG | - | chr1_3:66575722-66575741 | None:intergenic | 25.0% |
| ! | AATTTGTACAGACTAAAAAG+AGG | + | chr1_3:66575742-66575761 | Msa0135030:intron | 25.0% |
| ! | TCAGATTTAAATATGAGTTG+AGG | - | chr1_3:66575966-66575985 | None:intergenic | 25.0% |
| ! | ATTTGGTATCATATCATCAA+AGG | - | chr1_3:66576406-66576425 | None:intergenic | 25.0% |
| !! | AGAAAATTAGCACTGAAATT+TGG | - | chr1_3:66576423-66576442 | None:intergenic | 25.0% |
| !!! | TTTTAGGTTCAAATTTTAGG+AGG | - | chr1_3:66576728-66576747 | None:intergenic | 25.0% |
| !!! | AGCTTTTAGGTTCAAATTTT+AGG | - | chr1_3:66576731-66576750 | None:intergenic | 25.0% |
| ! | CCAAAACAATTCGAAAATAA+AGG | - | chr1_3:66576891-66576910 | None:intergenic | 25.0% |
| !!! | CCTTTATTTTCGAATTGTTT+TGG | + | chr1_3:66576888-66576907 | Msa0135030:intron | 25.0% |
| !!! | TTCGAATTGTTTTGGATTAA+TGG | + | chr1_3:66576896-66576915 | Msa0135030:intron | 25.0% |
| ! | AATATGACCCAAATAATAGT+AGG | - | chr1_3:66576938-66576957 | None:intergenic | 25.0% |
| !!! | TTTTATTTCCATAATCAGAC+GGG | - | chr1_3:66577271-66577290 | None:intergenic | 25.0% |
| !!! | TCTGGTAAATTTTTCTAGAA+GGG | - | chr1_3:66577438-66577457 | None:intergenic | 25.0% |
| !! | TTCTGGTAAATTTTTCTAGA+AGG | - | chr1_3:66577439-66577458 | None:intergenic | 25.0% |
| !! | CTCAACAAAAGTATAAAATC+CGG | + | chr1_3:66577486-66577505 | Msa0135030:intron | 25.0% |
| !! | TCAACAAAAGTATAAAATCC+GGG | + | chr1_3:66577487-66577506 | Msa0135030:intron | 25.0% |
| !!! | TAGAAAATAAAAGCACTAAC+AGG | + | chr1_3:66577586-66577605 | Msa0135030:intron | 25.0% |
| ! | TTTAAATGTGTCAAAATCCT+CGG | - | chr1_3:66577885-66577904 | None:intergenic | 25.0% |
| ! | GTAATTACAGCATATTAATG+TGG | - | chr1_3:66577954-66577973 | None:intergenic | 25.0% |
| ! | CAAGTTAACAAAACCAATAA+AGG | - | chr1_3:66578159-66578178 | None:intergenic | 25.0% |
| !!! | CTTTATTGGTTTTGTTAACT+TGG | + | chr1_3:66578157-66578176 | Msa0135030:intron | 25.0% |
| ! | TTAAGGTGGTAAATTTATAC+TGG | + | chr1_3:66578303-66578322 | Msa0135030:intron | 25.0% |
| !! | ACTACTTTCACATTTTGAAT+TGG | + | chr1_3:66578425-66578444 | Msa0135030:intron | 25.0% |
| !! | CTACTTTCACATTTTGAATT+GGG | + | chr1_3:66578426-66578445 | Msa0135030:intron | 25.0% |
| !!! | GGTTTTATAATTGCAAATGT+TGG | - | chr1_3:66578641-66578660 | None:intergenic | 25.0% |
| !!! | GATTAAAACAAAAGGCATTT+CGG | - | chr1_3:66578662-66578681 | None:intergenic | 25.0% |
| !!! | AAATGCCTTTTGTTTTAATC+AGG | + | chr1_3:66578662-66578681 | Msa0135030:intron | 25.0% |
| !! | CTTTTCCTGATTAAAACAAA+AGG | - | chr1_3:66578670-66578689 | None:intergenic | 25.0% |
| !!! | CTTTTGTTTTAATCAGGAAA+AGG | + | chr1_3:66578668-66578687 | Msa0135030:intron | 25.0% |
| !! | TTTTAATCAGGAAAAGGTTA+TGG | + | chr1_3:66578674-66578693 | Msa0135030:intron | 25.0% |
| !! | CATGTACATATGTTACTTAT+TGG | - | chr1_3:66578723-66578742 | None:intergenic | 25.0% |
| ! | CAATAAGTAACATATGTACA+TGG | + | chr1_3:66578721-66578740 | Msa0135030:CDS | 25.0% |
| ! | TATAGGTAAATCAACTTCTT+AGG | + | chr1_3:66578941-66578960 | Msa0135030:three_prime_UTR | 25.0% |
| ! | ACATATGTTTGCTTAATTAG+AGG | - | chr1_3:66578997-66579016 | None:intergenic | 25.0% |
| ! | CTAATTAAGCAAACATATGT+TGG | + | chr1_3:66578997-66579016 | Msa0135030:three_prime_UTR | 25.0% |
| ! | TTAGGATAAAACAGAATTTG+TGG | + | chr1_3:66579126-66579145 | Msa0135030:three_prime_UTR | 25.0% |
| !! | TTTGAAAGTATCTTAGAACC+TGG | - | chr1_3:66575321-66575340 | None:intergenic | 30.0% |
| !! | GGGTTTACAAAGTATTTTGT+TGG | - | chr1_3:66575361-66575380 | None:intergenic | 30.0% |
| CTCATAAATTAACCAGAGAA+AGG | - | chr1_3:66575382-66575401 | None:intergenic | 30.0% | |
| TAATGGAGAAACTGAAAAGT+GGG | - | chr1_3:66575705-66575724 | None:intergenic | 30.0% | |
| TTAATGGAGAAACTGAAAAG+TGG | - | chr1_3:66575706-66575725 | None:intergenic | 30.0% | |
| ! | GACACTTGTTAATGATTCAT+TGG | + | chr1_3:66576046-66576065 | Msa0135030:CDS | 30.0% |
| TGTTAATGATTCATTGGAGA+AGG | + | chr1_3:66576052-66576071 | Msa0135030:CDS | 30.0% | |
| ATCATTACAACTCTTGTTAC+TGG | + | chr1_3:66576119-66576138 | Msa0135030:CDS | 30.0% | |
| AACTCTTGTTACTGGTAATT+TGG | + | chr1_3:66576127-66576146 | Msa0135030:CDS | 30.0% | |
| AGCTGCAAAATATTCAGATT+GGG | + | chr1_3:66576301-66576320 | Msa0135030:CDS | 30.0% | |
| CAAAATATTCAGATTGGGTA+AGG | + | chr1_3:66576306-66576325 | Msa0135030:CDS | 30.0% | |
| ATCAAAGGCAGTAACTTATA+TGG | - | chr1_3:66576391-66576410 | None:intergenic | 30.0% | |
| AGTTGCATCTAGTAATTTGA+AGG | - | chr1_3:66576468-66576487 | None:intergenic | 30.0% | |
| AATGGTGATCAAATACTTGA+AGG | + | chr1_3:66576565-66576584 | Msa0135030:CDS | 30.0% | |
| !! | CATGATTTGTAACAGCTTTT+AGG | - | chr1_3:66576744-66576763 | None:intergenic | 30.0% |
| CTAAAAGCTGTTACAAATCA+TGG | + | chr1_3:66576742-66576761 | Msa0135030:intron | 30.0% | |
| TAATTGCATTTCAAGACCAT+TGG | + | chr1_3:66576983-66577002 | Msa0135030:intron | 30.0% | |
| ! | ATCGTTTCCTGTTTCATTTT+AGG | + | chr1_3:66577220-66577239 | Msa0135030:intron | 30.0% |
| !!! | TCCTGTTTCATTTTAGGATT+CGG | + | chr1_3:66577226-66577245 | Msa0135030:intron | 30.0% |
| TTTATTTCCATAATCAGACG+GGG | - | chr1_3:66577270-66577289 | None:intergenic | 30.0% | |
| !! | CTGGTAAATTTTTCTAGAAG+GGG | - | chr1_3:66577437-66577456 | None:intergenic | 30.0% |
| !!! | ATTTCATGTTTTGACCATGA+TGG | - | chr1_3:66577692-66577711 | None:intergenic | 30.0% |
| ATGGTCAAAACATGAAATCT+GGG | + | chr1_3:66577694-66577713 | Msa0135030:CDS | 30.0% | |
| TACAAAATAATATTCTCGCG+AGG | - | chr1_3:66577981-66578000 | None:intergenic | 30.0% | |
| TACTGACCTATTTACAAGTT+TGG | + | chr1_3:66578031-66578050 | Msa0135030:intron | 30.0% | |
| AAACCTGGAAGGATATATTA+TGG | + | chr1_3:66578267-66578286 | Msa0135030:CDS | 30.0% | |
| GGATATATTATGGACCAAAA+AGG | + | chr1_3:66578277-66578296 | Msa0135030:CDS | 30.0% | |
| ATGGACCAAAAAGGAATTTA+AGG | + | chr1_3:66578286-66578305 | Msa0135030:CDS | 30.0% | |
| ! | TACCACCTTAAATTCCTTTT+TGG | - | chr1_3:66578294-66578313 | None:intergenic | 30.0% |
| TTCTCAATTTGAGTAAATGC+AGG | + | chr1_3:66578358-66578377 | Msa0135030:intron | 30.0% | |
| AAGTTGTTCAGACATCATAT+CGG | - | chr1_3:66578884-66578903 | None:intergenic | 30.0% | |
| AACAACTTAACGAATAAGTC+AGG | + | chr1_3:66578896-66578915 | Msa0135030:three_prime_UTR | 30.0% | |
| AGACACACAATCATAAATCT+AGG | - | chr1_3:66579069-66579088 | None:intergenic | 30.0% | |
| TACTTTGTAAACCCTTTCTC+TGG | + | chr1_3:66575367-66575386 | Msa0135030:intron | 35.0% | |
| AAGCTATCTTAGAGAGCTTA+CGG | - | chr1_3:66575487-66575506 | None:intergenic | 35.0% | |
| GAAACTGAAAAGTGGGTATA+GGG | - | chr1_3:66575698-66575717 | None:intergenic | 35.0% | |
| AGAAACTGAAAAGTGGGTAT+AGG | - | chr1_3:66575699-66575718 | None:intergenic | 35.0% | |
| AGGTTCAGAGACTAAACAAA+AGG | + | chr1_3:66575762-66575781 | Msa0135030:intron | 35.0% | |
| ! | TGCTTCATGCTTGATGTTTT+GGG | + | chr1_3:66575887-66575906 | Msa0135030:CDS | 35.0% |
| TCTTGTTACTGGTAATTTGG+AGG | + | chr1_3:66576130-66576149 | Msa0135030:CDS | 35.0% | |
| ACTTATGTTCCTCCTCAATT+TGG | + | chr1_3:66576224-66576243 | Msa0135030:CDS | 35.0% | |
| TTCCTCCTCAATTTGGTATT+CGG | + | chr1_3:66576231-66576250 | Msa0135030:CDS | 35.0% | |
| CAGCTGCAAAATATTCAGAT+TGG | + | chr1_3:66576300-66576319 | Msa0135030:CDS | 35.0% | |
| ! | TTTTTCTGCAATGCAGGATT+AGG | + | chr1_3:66576488-66576507 | Msa0135030:intron | 35.0% |
| GAACTGTTGCTGTCTTATAA+TGG | + | chr1_3:66576547-66576566 | Msa0135030:CDS | 35.0% | |
| !!! | TTTTTTCGTTGTTATCCGCA+AGG | + | chr1_3:66576600-66576619 | Msa0135030:CDS | 35.0% |
| CACATATGGTTACTAACCAA+AGG | - | chr1_3:66576698-66576717 | None:intergenic | 35.0% | |
| TAGGAGGAAATACACACATA+TGG | - | chr1_3:66576712-66576731 | None:intergenic | 35.0% | |
| AAGCTGTTACAAATCATGGT+TGG | + | chr1_3:66576746-66576765 | Msa0135030:intron | 35.0% | |
| AGCTGTTACAAATCATGGTT+GGG | + | chr1_3:66576747-66576766 | Msa0135030:intron | 35.0% | |
| AAGTTAGCTGGAATAGTTGT+AGG | - | chr1_3:66576826-66576845 | None:intergenic | 35.0% | |
| ACAACTATTCCAGCTAACTT+TGG | + | chr1_3:66576826-66576845 | Msa0135030:intron | 35.0% | |
| TAATTTCCACCAAAGTTAGC+TGG | - | chr1_3:66576838-66576857 | None:intergenic | 35.0% | |
| TGAAATAAGCTTATGCGTCA+TGG | + | chr1_3:66577145-66577164 | Msa0135030:intron | 35.0% | |
| ACCGAATCCTAAAATGAAAC+AGG | - | chr1_3:66577230-66577249 | None:intergenic | 35.0% | |
| AACCATACTCAAGTACTAGT+TGG | - | chr1_3:66577352-66577371 | None:intergenic | 35.0% | |
| ACTAGTACTTGAGTATGGTT+TGG | + | chr1_3:66577352-66577371 | Msa0135030:intron | 35.0% | |
| !! | AGGTTATTTCTCATGTGACT+TGG | + | chr1_3:66577606-66577625 | Msa0135030:intron | 35.0% |
| CATGGTCAAAACATGAAATC+TGG | + | chr1_3:66577693-66577712 | Msa0135030:CDS | 35.0% | |
| AACTTCGCAAATTGTTCGTT+TGG | + | chr1_3:66577790-66577809 | Msa0135030:intron | 35.0% | |
| TACTGCTAGATCGAAATCAA+TGG | + | chr1_3:66577859-66577878 | Msa0135030:intron | 35.0% | |
| CAATGACATTGTATGTCAGT+TGG | + | chr1_3:66578062-66578081 | Msa0135030:intron | 35.0% | |
| GATTTCAGACTCTCCTTTAT+TGG | + | chr1_3:66578143-66578162 | Msa0135030:intron | 35.0% | |
| !!! | ATCCTTCCAGGTTTTAGAAT+GGG | - | chr1_3:66578261-66578280 | None:intergenic | 35.0% |
| !!! | TATCCTTCCAGGTTTTAGAA+TGG | - | chr1_3:66578262-66578281 | None:intergenic | 35.0% |
| GACCAAAAAGGAATTTAAGG+TGG | + | chr1_3:66578289-66578308 | Msa0135030:intron | 35.0% | |
| CAATTTGAGTAAATGCAGGA+TGG | + | chr1_3:66578362-66578381 | Msa0135030:intron | 35.0% | |
| ATTAAAGTTGTGATCATCCC+TGG | - | chr1_3:66578389-66578408 | None:intergenic | 35.0% | |
| GATGATCACAACTTTAATCC+AGG | + | chr1_3:66578391-66578410 | Msa0135030:CDS | 35.0% | |
| ! | TCACATTTTGAATTGGGACT+TGG | + | chr1_3:66578432-66578451 | Msa0135030:intron | 35.0% |
| ! | CACATTTTGAATTGGGACTT+GGG | + | chr1_3:66578433-66578452 | Msa0135030:intron | 35.0% |
| GTAAATGGACAGATGCATAA+TGG | - | chr1_3:66578491-66578510 | None:intergenic | 35.0% | |
| TATGCATCTGTCCATTTACA+CGG | + | chr1_3:66578492-66578511 | Msa0135030:intron | 35.0% | |
| ATCTACTCGTTGAGAAACTA+TGG | - | chr1_3:66578836-66578855 | None:intergenic | 35.0% | |
| ATGGACATGTGACATGTCAT+AGG | - | chr1_3:66575446-66575465 | None:intergenic | 40.0% | |
| ! | CAAAAGGTGTAAACTCTACG+AGG | + | chr1_3:66575778-66575797 | Msa0135030:intron | 40.0% |
| ! | GTGCTTCATGCTTGATGTTT+TGG | + | chr1_3:66575886-66575905 | Msa0135030:CDS | 40.0% |
| !!! | CATGCTTGATGTTTTGGGAA+AGG | + | chr1_3:66575892-66575911 | Msa0135030:CDS | 40.0% |
| AGTTTCCAAGCTGGCAAATT+TGG | - | chr1_3:66576017-66576036 | None:intergenic | 40.0% | |
| TTCCCTTTGCACTGAAAAAG+AGG | + | chr1_3:66576078-66576097 | Msa0135030:CDS | 40.0% | |
| TCCCTTTGCACTGAAAAAGA+GGG | + | chr1_3:66576079-66576098 | Msa0135030:CDS | 40.0% | |
| !!! | ACCCTCTTTTTCAGTGCAAA+GGG | - | chr1_3:66576083-66576102 | None:intergenic | 40.0% |
| !!! | AACCCTCTTTTTCAGTGCAA+AGG | - | chr1_3:66576084-66576103 | None:intergenic | 40.0% |
| ! | GAAAAAGAGGGTTGATTCTG+AGG | + | chr1_3:66576091-66576110 | Msa0135030:CDS | 40.0% |
| TGCATGTGAGACTATATCTG+AGG | + | chr1_3:66576160-66576179 | Msa0135030:CDS | 40.0% | |
| TCCTCCTCAATTTGGTATTC+GGG | + | chr1_3:66576232-66576251 | Msa0135030:CDS | 40.0% | |
| TTTCCCCGAATACCAAATTG+AGG | - | chr1_3:66576239-66576258 | None:intergenic | 40.0% | |
| CAATTTGGTATTCGGGGAAA+TGG | + | chr1_3:66576239-66576258 | Msa0135030:CDS | 40.0% | |
| AATGGTGAACATTTGGCTGT+TGG | + | chr1_3:66576257-66576276 | Msa0135030:CDS | 40.0% | |
| ATGGTGAACATTTGGCTGTT+GGG | + | chr1_3:66576258-66576277 | Msa0135030:CDS | 40.0% | |
| !!! | GCAACTTTTTTCTGCAATGC+AGG | + | chr1_3:66576482-66576501 | Msa0135030:intron | 40.0% |
| GCTAGAATTCTGTTGTCCTT+TGG | + | chr1_3:66576679-66576698 | Msa0135030:intron | 40.0% | |
| TGTTACAAATCATGGTTGGG+TGG | + | chr1_3:66576750-66576769 | Msa0135030:intron | 40.0% | |
| ACTATTCCAGCTAACTTTGG+TGG | + | chr1_3:66576829-66576848 | Msa0135030:intron | 40.0% | |
| TACATTCTCAAGAGTTCACG+AGG | + | chr1_3:66577064-66577083 | Msa0135030:intron | 40.0% | |
| ACTAGTTGGCGTATTATTCC+TGG | - | chr1_3:66577338-66577357 | None:intergenic | 40.0% | |
| ! | TTATCTCATGTGATGGAGAG+TGG | + | chr1_3:66577512-66577531 | Msa0135030:intron | 40.0% |
| GTCAAAACATGAAATCTGGG+AGG | + | chr1_3:66577697-66577716 | Msa0135030:CDS | 40.0% | |
| TGCATTCACTCACTACTATG+TGG | + | chr1_3:66577907-66577926 | Msa0135030:intron | 40.0% | |
| ATTCACTCACTACTATGTGG+TGG | + | chr1_3:66577910-66577929 | Msa0135030:intron | 40.0% | |
| ! | GAGAGTCTGAAATCTAGTGT+AGG | - | chr1_3:66578137-66578156 | None:intergenic | 40.0% |
| ATGTCATTGCAGATAGCTTG+AGG | + | chr1_3:66578186-66578205 | Msa0135030:intron | 40.0% | |
| GCAACATGCAGATAGTATTC+AGG | + | chr1_3:66578214-66578233 | Msa0135030:CDS | 40.0% | |
| ! | GTATTCAGGTTCCAACAGAA+TGG | + | chr1_3:66578228-66578247 | Msa0135030:CDS | 40.0% |
| !! | AATCAGCCCATTCTAAAACC+TGG | + | chr1_3:66578252-66578271 | Msa0135030:CDS | 40.0% |
| GGTCCATAATATATCCTTCC+AGG | - | chr1_3:66578273-66578292 | None:intergenic | 40.0% | |
| ! | TTTTGAATTGGGACTTGGGA+TGG | + | chr1_3:66578437-66578456 | Msa0135030:intron | 40.0% |
| AAGACCACAAACCGTGTAAA+TGG | - | chr1_3:66578506-66578525 | None:intergenic | 40.0% | |
| GGTTATGGAGAAAGCAACTT+TGG | + | chr1_3:66578689-66578708 | Msa0135030:CDS | 40.0% | |
| ATGGAGAAAGCAACTTTGGA+AGG | + | chr1_3:66578693-66578712 | Msa0135030:CDS | 40.0% | |
| TGAAGATCCTAAACCTTTGC+TGG | + | chr1_3:66578744-66578763 | Msa0135030:exon | 40.0% | |
| GAAGATCCTAAACCTTTGCT+GGG | + | chr1_3:66578745-66578764 | Msa0135030:exon | 40.0% | |
| TTTCATCCCAGCAAAGGTTT+AGG | - | chr1_3:66578754-66578773 | None:intergenic | 40.0% | |
| AAACCTTTGCTGGGATGAAA+TGG | + | chr1_3:66578754-66578773 | Msa0135030:three_prime_UTR | 40.0% | |
| AATGTATACGCCAACTGAAG+CGG | - | chr1_3:66578806-66578825 | None:intergenic | 40.0% | |
| GTTTCTCAACGAGTAGATGA+TGG | + | chr1_3:66578838-66578857 | Msa0135030:three_prime_UTR | 40.0% | |
| CAGACATCATATCGGTAAAC+TGG | - | chr1_3:66578876-66578895 | None:intergenic | 40.0% | |
| ! | ATGTTGCTAACATGGCCTTT+TGG | - | chr1_3:66578973-66578992 | None:intergenic | 40.0% |
| ! | TTAGAGGCATGTTGCTAACA+TGG | - | chr1_3:66578981-66579000 | None:intergenic | 40.0% |
| GGCACAAAAAACATTGATGC+TGG | + | chr1_3:66579019-66579038 | Msa0135030:three_prime_UTR | 40.0% | |
| CAGTTACAGACCAATCAGAT+CGG | - | chr1_3:66579046-66579065 | None:intergenic | 40.0% | |
| GTCTGTAACTGTGCTATAAC+TGG | + | chr1_3:66579085-66579104 | Msa0135030:three_prime_UTR | 40.0% | |
| ! | GAACATCTGAGGTGTGTGAA+AGG | - | chr1_3:66575269-66575288 | None:intergenic | 45.0% |
| ! | TCAAGAAAGACTTTTGCCGC+AGG | - | chr1_3:66575291-66575310 | None:intergenic | 45.0% |
| GTCTTTCTTGAAGCTCATCC+AGG | + | chr1_3:66575300-66575319 | Msa0135030:CDS | 45.0% | |
| ! | GCTGGCAAATTTGGTGACAA+TGG | - | chr1_3:66576008-66576027 | None:intergenic | 45.0% |
| TGTCACCAAATTTGCCAGCT+TGG | + | chr1_3:66576009-66576028 | Msa0135030:CDS | 45.0% | |
| TGCAATGCAAGTTTCCAAGC+TGG | - | chr1_3:66576026-66576045 | None:intergenic | 45.0% | |
| CCTCCTCAATTTGGTATTCG+GGG | + | chr1_3:66576233-66576252 | Msa0135030:CDS | 45.0% | |
| TCGGGGAAATGGTGAACATT+TGG | + | chr1_3:66576250-66576269 | Msa0135030:CDS | 45.0% | |
| TGGTGAACATTTGGCTGTTG+GGG | + | chr1_3:66576259-66576278 | Msa0135030:CDS | 45.0% | |
| ATGCAGGATTAGGAAGACTC+TGG | + | chr1_3:66576498-66576517 | Msa0135030:intron | 45.0% | |
| AACAGTTCTGTCACTGATGG+AGG | - | chr1_3:66576535-66576554 | None:intergenic | 45.0% | |
| AGCAACAGTTCTGTCACTGA+TGG | - | chr1_3:66576538-66576557 | None:intergenic | 45.0% | |
| TTTCGTTGTTATCCGCAAGG+TGG | + | chr1_3:66576603-66576622 | Msa0135030:intron | 45.0% | |
| TTCGTTGTTATCCGCAAGGT+GGG | + | chr1_3:66576604-66576623 | Msa0135030:intron | 45.0% | |
| GATAGAATAAGCCCACCTTG+CGG | - | chr1_3:66576618-66576637 | None:intergenic | 45.0% | |
| ! | TAGGATTCGGTTTCCGATGA+TGG | + | chr1_3:66577239-66577258 | Msa0135030:intron | 45.0% |
| ! | AGGATTCGGTTTCCGATGAT+GGG | + | chr1_3:66577240-66577259 | Msa0135030:intron | 45.0% |
| GGAAGAACACCATCACTGAT+AGG | - | chr1_3:66577317-66577336 | None:intergenic | 45.0% | |
| ! | ATCAGTGATGGTGTTCTTCC+AGG | + | chr1_3:66577317-66577336 | Msa0135030:CDS | 45.0% |
| CGCCAACTAGTACTTGAGTA+TGG | + | chr1_3:66577347-66577366 | Msa0135030:intron | 45.0% | |
| CCATCACATGAGATAAAGCC+CGG | - | chr1_3:66577508-66577527 | None:intergenic | 45.0% | |
| ! | GCATGATTTGCACTTGTGCA+GGG | + | chr1_3:66577628-66577647 | Msa0135030:intron | 45.0% |
| ATGGAGCAACTTCTCGACAT+GGG | - | chr1_3:66577673-66577692 | None:intergenic | 45.0% | |
| TAGATCGAAATCAATGGCCG+AGG | + | chr1_3:66577865-66577884 | Msa0135030:intron | 45.0% | |
| !! | AGCCCATTCTAAAACCTGGA+AGG | + | chr1_3:66578256-66578275 | Msa0135030:CDS | 45.0% |
| AGTAAATGCAGGATGGACCA+GGG | + | chr1_3:66578369-66578388 | Msa0135030:intron | 45.0% | |
| CTGTCCATTTACACGGTTTG+TGG | + | chr1_3:66578499-66578518 | Msa0135030:intron | 45.0% | |
| TGTCCATTTCATCCCAGCAA+AGG | - | chr1_3:66578760-66578779 | None:intergenic | 45.0% | |
| ATGTATACGCCAACTGAAGC+GGG | - | chr1_3:66578805-66578824 | None:intergenic | 45.0% | |
| ! | TTGCTAACATGGCCTTTTGG+AGG | - | chr1_3:66578970-66578989 | None:intergenic | 45.0% |
| ACACACCTCAGATGTTCCTG+CGG | + | chr1_3:66575272-66575291 | Msa0135030:CDS | 50.0% | |
| ! | TTTTGCCGCAGGAACATCTG+AGG | - | chr1_3:66575280-66575299 | None:intergenic | 50.0% |
| CCCCGAATACCAAATTGAGG+AGG | - | chr1_3:66576236-66576255 | None:intergenic | 50.0% | |
| GGTGAACATTTGGCTGTTGG+GGG | + | chr1_3:66576260-66576279 | Msa0135030:CDS | 50.0% | |
| ATTTGGCTGTTGGGGGCTAT+GGG | + | chr1_3:66576267-66576286 | Msa0135030:CDS | 50.0% | |
| CAGACAGCTCCTATCAGTGA+TGG | + | chr1_3:66577305-66577324 | Msa0135030:CDS | 50.0% | |
| ! | CCGGGCTTTATCTCATGTGA+TGG | + | chr1_3:66577505-66577524 | Msa0135030:intron | 50.0% |
| ! | GGCATGATTTGCACTTGTGC+AGG | + | chr1_3:66577627-66577646 | Msa0135030:intron | 50.0% |
| GATGGAGCAACTTCTCGACA+TGG | - | chr1_3:66577674-66577693 | None:intergenic | 50.0% | |
| GTCGAGAAGTTGCTCCATCA+TGG | + | chr1_3:66577675-66577694 | Msa0135030:CDS | 50.0% | |
| TGGGCTGATTGCCATTCTGT+TGG | - | chr1_3:66578242-66578261 | None:intergenic | 50.0% | |
| GAGTAAATGCAGGATGGACC+AGG | + | chr1_3:66578368-66578387 | Msa0135030:intron | 50.0% | |
| TGTATACGCCAACTGAAGCG+GGG | - | chr1_3:66578804-66578823 | None:intergenic | 50.0% | |
| CTTCTTAGGCCACCTCCAAA+AGG | + | chr1_3:66578955-66578974 | Msa0135030:three_prime_UTR | 50.0% | |
| !! | CTAACATGGCCTTTTGGAGG+TGG | - | chr1_3:66578967-66578986 | None:intergenic | 50.0% |
| TGATGCTGGTCCGATCTGAT+TGG | + | chr1_3:66579033-66579052 | Msa0135030:three_prime_UTR | 50.0% | |
| CATTTGGCTGTTGGGGGCTA+TGG | + | chr1_3:66576266-66576285 | Msa0135030:CDS | 55.0% | |
| AGACGGGGCTTTCCCATCAT+CGG | - | chr1_3:66577255-66577274 | None:intergenic | 55.0% | |
| GGGAAAGCCCCGTCTGATTA+TGG | + | chr1_3:66577260-66577279 | Msa0135030:CDS | 55.0% | |
| AGAAGGGGCTCGTTCTTCTG+TGG | - | chr1_3:66577422-66577441 | None:intergenic | 55.0% | |
| TGCACTTGTGCAGGGTATGC+AGG | + | chr1_3:66577636-66577655 | Msa0135030:intron | 55.0% | |
| TGCAGGGTATGCAGGAGTGA+AGG | + | chr1_3:66577644-66577663 | Msa0135030:intron | 55.0% | |
| TGAAGCGGGGGAGAAAGAGA+AGG | - | chr1_3:66578791-66578810 | None:intergenic | 55.0% | |
| TCTTTCTCCCCCGCTTCAGT+TGG | + | chr1_3:66578793-66578812 | Msa0135030:three_prime_UTR | 55.0% | |
| GTATACGCCAACTGAAGCGG+GGG | - | chr1_3:66578803-66578822 | None:intergenic | 55.0% | |
| TGGCTGTTGGGGGCTATGGG+AGG | + | chr1_3:66576270-66576289 | Msa0135030:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 66575135 | 66579159 | 66575135 | ID=Msa0135030;Name=Msa0135030 |
| chr1_3 | mRNA | 66575135 | 66579159 | 66575135 | ID=Msa0135030-mRNA-1;Parent=Msa0135030;Name=Msa0135030-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.87|1|1|1|8|413|396 |
| chr1_3 | exon | 66575135 | 66575321 | 66575135 | ID=Msa0135030-mRNA-1:exon:22706;Parent=Msa0135030-mRNA-1 |
| chr1_3 | exon | 66575856 | 66576327 | 66575856 | ID=Msa0135030-mRNA-1:exon:22707;Parent=Msa0135030-mRNA-1 |
| chr1_3 | exon | 66576504 | 66576621 | 66576504 | ID=Msa0135030-mRNA-1:exon:22708;Parent=Msa0135030-mRNA-1 |
| chr1_3 | exon | 66577242 | 66577363 | 66577242 | ID=Msa0135030-mRNA-1:exon:22709;Parent=Msa0135030-mRNA-1 |
| chr1_3 | exon | 66577649 | 66577734 | 66577649 | ID=Msa0135030-mRNA-1:exon:22710;Parent=Msa0135030-mRNA-1 |
| chr1_3 | exon | 66578198 | 66578307 | 66578198 | ID=Msa0135030-mRNA-1:exon:22711;Parent=Msa0135030-mRNA-1 |
| chr1_3 | exon | 66578380 | 66578412 | 66578380 | ID=Msa0135030-mRNA-1:exon:22712;Parent=Msa0135030-mRNA-1 |
| chr1_3 | exon | 66578684 | 66579159 | 66578684 | ID=Msa0135030-mRNA-1:exon:22713;Parent=Msa0135030-mRNA-1 |
| chr1_3 | CDS | 66575135 | 66575321 | 66575135 | ID=Msa0135030-mRNA-1:cds;Parent=Msa0135030-mRNA-1 |
| chr1_3 | CDS | 66575856 | 66576327 | 66575856 | ID=Msa0135030-mRNA-1:cds;Parent=Msa0135030-mRNA-1 |
| chr1_3 | CDS | 66576504 | 66576621 | 66576504 | ID=Msa0135030-mRNA-1:cds;Parent=Msa0135030-mRNA-1 |
| chr1_3 | CDS | 66577242 | 66577363 | 66577242 | ID=Msa0135030-mRNA-1:cds;Parent=Msa0135030-mRNA-1 |
| chr1_3 | CDS | 66577649 | 66577734 | 66577649 | ID=Msa0135030-mRNA-1:cds;Parent=Msa0135030-mRNA-1 |
| chr1_3 | CDS | 66578198 | 66578307 | 66578198 | ID=Msa0135030-mRNA-1:cds;Parent=Msa0135030-mRNA-1 |
| chr1_3 | CDS | 66578380 | 66578412 | 66578380 | ID=Msa0135030-mRNA-1:cds;Parent=Msa0135030-mRNA-1 |
| chr1_3 | CDS | 66578684 | 66578746 | 66578684 | ID=Msa0135030-mRNA-1:cds;Parent=Msa0135030-mRNA-1 |
| chr1_3 | three_prime_UTR | 66578747 | 66579159 | 66578747 | ID=Msa0135030-mRNA-1:three_prime_utr;Parent=Msa0135030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
