AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0345890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0345890 MtrunA17_Chr3g0093091 87.000 700 24 3 1 633 1 700 0.0 1237
Msa0345890 MtrunA17_Chr4g0060401 57.500 720 201 7 10 649 8 702 0.0 797
Msa0345890 MtrunA17_Chr4g0060501 57.959 735 178 9 10 649 6 704 0.0 796
Msa0345890 MtrunA17_Chr4g0060431 58.554 719 184 10 11 649 5 689 0.0 777
Msa0345890 MtrunA17_Chr4g0060411 52.905 482 132 8 10 421 6 462 8.33e-159 464
Msa0345890 MtrunA17_Chr4g0060421 65.801 231 62 2 429 649 1 224 4.21e-98 308
Msa0345890 MtrunA17_Chr4g0060451 69.458 203 56 2 297 499 14 210 1.21e-92 286
Msa0345890 MtrunA17_Chr4g0060461 75.926 54 13 0 526 579 2 55 2.21e-23 93.6
Msa0345890 MtrunA17_Chr7g0257341 25.852 352 216 10 305 633 306 635 6.17e-21 98.2
Msa0345890 MtrunA17_Chr7g0257341 25.000 352 217 10 294 619 1197 1527 1.11e-14 78.2
Msa0345890 MtrunA17_Chr4g0060471 59.375 64 19 1 586 649 1 57 5.19e-16 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0345890 AT3G47790.1 54.148 687 233 7 8 633 4 669 0.0 713
Msa0345890 AT3G47790.3 54.148 687 233 7 8 633 4 669 0.0 712
Msa0345890 AT3G47780.1 53.621 718 237 8 10 649 6 705 0.0 709
Msa0345890 AT3G47740.1 51.124 712 261 8 10 649 6 702 0.0 699
Msa0345890 AT3G47750.1 51.321 719 254 10 10 649 6 707 0.0 686
Msa0345890 AT3G47760.3 50.696 718 259 11 10 649 6 706 0.0 683
Msa0345890 AT5G61700.1 51.498 701 260 12 10 649 6 687 0.0 664
Msa0345890 AT5G61700.2 51.498 701 260 12 10 649 6 687 0.0 662
Msa0345890 AT5G61700.4 51.498 701 260 12 10 649 6 687 0.0 662
Msa0345890 AT3G47770.2 50.211 711 267 12 11 649 7 702 0.0 660
Msa0345890 AT5G61700.3 51.641 701 259 12 10 649 6 687 0.0 660
Msa0345890 AT3G47770.3 50.791 695 262 11 11 633 7 693 0.0 657
Msa0345890 AT5G61740.2 54.419 645 255 10 11 632 7 635 0.0 635
Msa0345890 AT3G47760.1 48.954 717 233 12 10 649 6 666 0.0 635
Msa0345890 AT3G47790.2 59.701 536 189 4 122 633 18 550 0.0 633
Msa0345890 AT5G61740.1 52.065 678 254 11 11 632 7 669 0.0 622
Msa0345890 AT3G47770.1 55.296 557 197 7 136 649 129 676 0.0 603
Msa0345890 AT3G47760.2 47.354 718 253 15 10 649 6 676 0.0 600
Msa0345890 AT5G61740.3 54.512 543 211 7 113 632 1 530 0.0 558
Msa0345890 AT3G47730.1 26.385 379 228 12 297 632 240 610 5.38e-20 95.5
Msa0345890 AT5G61730.1 27.174 368 228 12 297 632 243 602 1.06e-16 84.7
Msa0345890 AT5G61690.2 26.431 367 222 12 297 623 242 600 1.21e-16 84.7
Msa0345890 AT5G61690.1 26.431 367 222 12 297 623 242 600 1.29e-16 84.7
Msa0345890 AT5G61730.2 26.455 378 228 12 297 632 243 612 1.30e-15 81.3
Msa0345890 AT2G41700.1 36.364 132 80 2 501 631 1406 1534 1.61e-15 81.3
Msa0345890 AT2G41700.2 29.954 217 134 6 430 631 1279 1492 1.83e-15 81.3

Find 152 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAACTCGAACAACATTT+TGG 0.194469 3_1:+5593357 None:intergenic
CTGACTTTGTAGATAGTAAA+TGG 0.216674 3_1:+5594496 None:intergenic
TTCATATAACCCACGATATA+AGG 0.236932 3_1:+5592270 None:intergenic
GATTCCTCGTTCTGTAAATT+TGG 0.239265 3_1:-5593763 Msa0345890:intron
CCAACGAACCTGCCAGCTTC+TGG 0.266956 3_1:-5597239 Msa0345890:CDS
TTTAATGGGGTCTCAGGTTT+TGG 0.270326 3_1:+5593325 None:intergenic
AACACAAGTAAGTTGAAGTT+TGG 0.296078 3_1:-5590715 Msa0345890:three_prime_UTR
TAAGATGTGCTCAGGCTTTA+CGG 0.303141 3_1:-5594071 Msa0345890:CDS
TATAGATAATTCAAATGTTA+TGG 0.314649 3_1:-5594795 Msa0345890:CDS
GTGCTCAGGCTTTACGGTTA+TGG 0.315867 3_1:-5594065 Msa0345890:CDS
TAGGAAGAACTTAACCTTCC+AGG 0.317306 3_1:-5597196 Msa0345890:intron
TGAATGTGGGGTTCAATATT+CGG 0.340040 3_1:-5595423 Msa0345890:CDS
GTGATATTTGGCTCAGTCAT+AGG 0.342833 3_1:-5592919 Msa0345890:intron
TTGGTTCTGCATAAGGGGTT+TGG 0.350042 3_1:+5595281 None:intergenic
GAAAGCAGGCTCCAGAAAAT+TGG 0.354252 3_1:+5594532 None:intergenic
AAGCCACGTCAAACTTTAAT+GGG 0.357425 3_1:+5593311 None:intergenic
AGATGAAATAAAACACGAAT+TGG 0.359494 3_1:+5592773 None:intergenic
CTTCAGTTTCTGTTGGGCTC+TGG 0.365818 3_1:-5593382 Msa0345890:CDS
CTCAAGCAAACGCGCTTCTT+AGG 0.368147 3_1:-5597215 Msa0345890:CDS
GAAGCCACGTCAAACTTTAA+TGG 0.374931 3_1:+5593310 None:intergenic
TTCCTACCTTCAGTTTCTGT+TGG 0.376284 3_1:-5593389 Msa0345890:CDS
GTAAACGATGCTCTATATAA+AGG 0.376634 3_1:-5594024 Msa0345890:CDS
TTTGGCACTGGTCTATTAGC+TGG 0.377995 3_1:-5592573 Msa0345890:CDS
AGAAGGGTGGATCATTGTTA+TGG 0.382568 3_1:-5592311 Msa0345890:CDS
CTGTAAGAAATAATCCAATA+TGG 0.387839 3_1:+5592982 None:intergenic
TCCTACCTTCAGTTTCTGTT+GGG 0.391435 3_1:-5593388 Msa0345890:CDS
TTGCCTGAAGGAGAATGCTT+TGG 0.392550 3_1:-5591611 Msa0345890:CDS
ATTCCAAAGCATTCTCCTTC+AGG 0.409577 3_1:+5591608 None:intergenic
GTCTCGGTGATGGGCCATAT+TGG 0.409881 3_1:-5592996 Msa0345890:CDS
ACTTCAACTTACTTGTGTTA+AGG 0.411409 3_1:+5590719 None:intergenic
ACCGGTACTAATCAGTCTTT+CGG 0.412543 3_1:-5595230 Msa0345890:CDS
CATTCCGTAGGGTTAGTAAT+AGG 0.416638 3_1:+5595377 None:intergenic
TGAGCCATTGGTTCTGCATA+AGG 0.418137 3_1:+5595274 None:intergenic
CAGCATGTAGATAACTGATA+TGG 0.419229 3_1:+5592948 None:intergenic
GAGCCATTGGTTCTGCATAA+GGG 0.420992 3_1:+5595275 None:intergenic
TCAAATGTTAAGACCGCTAC+AGG 0.421320 3_1:-5592703 Msa0345890:intron
TTGGTGAATATCTGCTTTCT+CGG 0.421352 3_1:+5591973 None:intergenic
ATATATTTAATGTCAGTATA+TGG 0.421523 3_1:-5593839 Msa0345890:CDS
TCAAACTTTAATGGGGTCTC+AGG 0.434548 3_1:+5593319 None:intergenic
GATCCTTGCCTTTGAAGACT+AGG 0.441394 3_1:+5592013 None:intergenic
CGGCTTTGATAGAATTGCAT+TGG 0.442146 3_1:-5593790 Msa0345890:CDS
ACGATTGCATGATTCGTAGT+AGG 0.449352 3_1:+5591713 None:intergenic
GGATCAGGTGTTTGCAGTAA+AGG 0.452286 3_1:+5595350 None:intergenic
ACAGCGCGGTATCGTGGATC+AGG 0.454481 3_1:+5595335 None:intergenic
AGAAGTCTTTCCAGCACCAT+TGG 0.458442 3_1:+5591577 None:intergenic
TTATCTATATCAATGGTACT+TGG 0.458557 3_1:+5594809 None:intergenic
TTGTAATGCATACAGATGAT+AGG 0.458902 3_1:-5591013 Msa0345890:intron
ATTTGAATTATCTATATCAA+TGG 0.463245 3_1:+5594802 None:intergenic
CTATATAAAGGTTATAGAAA+AGG 0.467978 3_1:-5594012 Msa0345890:CDS
ATGGCAGTGGTTGCATATAT+AGG 0.472820 3_1:-5592600 Msa0345890:intron
GCTTGAGTCCAGAAGCTGGC+AGG 0.473260 3_1:+5597231 None:intergenic
CCCGGGTTTGCCTTATATCG+TGG 0.474072 3_1:-5592280 Msa0345890:CDS
TCAGGTACAGCATTTGTTCA+AGG 0.481991 3_1:-5590974 Msa0345890:CDS
GATCTCAATGATAGCACAAA+TGG 0.482512 3_1:-5592190 Msa0345890:CDS
CTAGCGGTCGATATCTGAAC+AGG 0.484332 3_1:+5594446 None:intergenic
CTCTCACCGCAAATTTCGCC+GGG 0.486894 3_1:+5591648 None:intergenic
ATTGTTATGGAGTTATATCC+CGG 0.491503 3_1:-5592298 Msa0345890:CDS
GAAGTCTTTCCAGCACCATT+GGG 0.493257 3_1:+5591578 None:intergenic
CCGGGTTTGCCTTATATCGT+GGG 0.493382 3_1:-5592279 Msa0345890:CDS
GGGGACTCATGGTATGCGGT+GGG 0.495358 3_1:-5592215 Msa0345890:CDS
GTTTGCTTGAGTCCAGAAGC+TGG 0.497287 3_1:+5597227 None:intergenic
TCTCTCACCGCAAATTTCGC+CGG 0.501280 3_1:+5591647 None:intergenic
TGACTTTGTAGATAGTAAAT+GGG 0.501498 3_1:+5594497 None:intergenic
CCCACGATATAAGGCAAACC+CGG 0.502468 3_1:+5592279 None:intergenic
TATAAACTTACAAATTTCGC+TGG 0.505784 3_1:-5592749 Msa0345890:CDS
CTCTCTTTACAGTCTTGTCA+AGG 0.506961 3_1:-5594841 Msa0345890:intron
GCCGGGTTACCATCCCTCCC+TGG 0.507448 3_1:+5591665 None:intergenic
AAACTGAGCAAAGTTTATCC+AGG 0.509916 3_1:-5591683 Msa0345890:CDS
GACATAAGAACTGATATGAA+TGG 0.512500 3_1:-5590947 Msa0345890:CDS
GGTCTTGATTATCATGTTCG+TGG 0.512856 3_1:-5592158 Msa0345890:CDS
TTATCCCTTGCTTTGCCTGA+AGG 0.515551 3_1:-5591623 Msa0345890:CDS
TGGTAACCCGGCGAAATTTG+CGG 0.516218 3_1:-5591654 Msa0345890:CDS
CCAGAAGCTGGCAGGTTCGT+TGG 0.518341 3_1:+5597239 None:intergenic
ACGATACCGCGCTGTTAGAA+CGG 0.520329 3_1:-5595327 Msa0345890:CDS
TAATAGGACAAGCGCCAACT+TGG 0.522893 3_1:+5595393 None:intergenic
TCCAGGGAGGGATGGTAACC+CGG 0.524746 3_1:-5591666 Msa0345890:CDS
AAAATGCATGGTCTCGGTGA+TGG 0.528178 3_1:-5593006 Msa0345890:CDS
TAAGTCTGCCATAAAAGAGT+AGG 0.528252 3_1:+5590760 None:intergenic
TTCGGAAGCCTAGTCTTCAA+AGG 0.529144 3_1:-5592021 Msa0345890:CDS
TTGCTGTGGGAAATCTTGAC+AGG 0.530421 3_1:-5590792 Msa0345890:CDS
ATGCTCGGTCCCAATGGTGC+TGG 0.538556 3_1:-5591587 Msa0345890:CDS
GGGTTTGGAAAATCAGAAAA+CGG 0.542161 3_1:+5595296 None:intergenic
TATCTATATCAATGGTACTT+GGG 0.542816 3_1:+5594810 None:intergenic
CAATGCAATTCTATCAAAGC+CGG 0.547605 3_1:+5593791 None:intergenic
GTACAATTTCTTCAGAAGGG+TGG 0.547606 3_1:-5592324 Msa0345890:intron
GAATGGAATATATACAAGCA+TGG 0.548662 3_1:-5590930 Msa0345890:CDS
GGAGAATGCTTTGGAATGCT+CGG 0.549913 3_1:-5591602 Msa0345890:CDS
ACTAATCAGTCTTTCGGAGA+AGG 0.553862 3_1:-5595224 Msa0345890:intron
AATGTTGTTCGAGTTTGTGA+AGG 0.554838 3_1:-5593353 Msa0345890:CDS
CAGATCAATGAGATAACTGC+AGG 0.555105 3_1:-5593976 Msa0345890:intron
TAGTTTCGCGACAAATGTCT+TGG 0.557277 3_1:-5594771 Msa0345890:intron
AGCCATTGGTTCTGCATAAG+GGG 0.558267 3_1:+5595276 None:intergenic
GCTAGAGTTAAGATGTGCTC+AGG 0.558520 3_1:-5594079 Msa0345890:intron
GGAGATACTATGGGGACTCA+TGG 0.559932 3_1:-5592226 Msa0345890:CDS
ATTCTCCTTCAGGCAAAGCA+AGG 0.560174 3_1:+5591618 None:intergenic
GTTCTAACAGCGCGGTATCG+TGG 0.562327 3_1:+5595329 None:intergenic
GGAAGCTCTGAAAAGAAAGC+AGG 0.562519 3_1:+5594518 None:intergenic
AATGGAATATATACAAGCAT+GGG 0.563717 3_1:-5590929 Msa0345890:CDS
ACAAATGCTGTACCTGAGGT+TGG 0.564179 3_1:+5590980 None:intergenic
TCCGAAAGACTGATTAGTAC+CGG 0.564755 3_1:+5595229 None:intergenic
TGATTATCATGTTCGTGGAG+TGG 0.567891 3_1:-5592153 Msa0345890:CDS
ATTTACACTTTAGACGGAGA+AGG 0.570050 3_1:-5591756 Msa0345890:intron
GGATGCGTGGAGAATGAATG+TGG 0.571136 3_1:-5595437 Msa0345890:CDS
AGTGAGGGGACATGAGCCAT+TGG 0.572183 3_1:+5595262 None:intergenic
AAATGCATGGTCTCGGTGAT+GGG 0.574457 3_1:-5593005 Msa0345890:CDS
GGTCTTACAAAGCCAACCTC+AGG 0.574768 3_1:-5590992 Msa0345890:CDS
AGTAAAGGAGGCCATTCCGT+AGG 0.575779 3_1:+5595365 None:intergenic
ACCGGTGAAGAGCATAGTGA+GGG 0.582022 3_1:+5595247 None:intergenic
ATCTATCATCAAACCTGTAG+CGG 0.582101 3_1:+5592690 None:intergenic
GAGAGAGAGAGTAACCTGGA+AGG 0.582254 3_1:+5597182 None:intergenic
TTGTCCTATTACTAACCCTA+CGG 0.584761 3_1:-5595381 Msa0345890:CDS
GATGCGTGGAGAATGAATGT+GGG 0.586089 3_1:-5595436 Msa0345890:CDS
TGGGGACTCATGGTATGCGG+TGG 0.586806 3_1:-5592216 Msa0345890:CDS
TACACTTTAGACGGAGAAGG+TGG 0.587151 3_1:-5591753 Msa0345890:intron
AAAGTTTATCCAGGGAGGGA+TGG 0.590082 3_1:-5591674 Msa0345890:CDS
TCAACTTACTTGTGTTAAGG+CGG 0.594619 3_1:+5590722 None:intergenic
TAGCACAAATGGCATGAAAG+AGG 0.600475 3_1:-5592179 Msa0345890:CDS
ATGGCGTAATAGTTCTTCTG+AGG 0.606487 3_1:-5594046 Msa0345890:CDS
TTCTCCTTCAGGCAAAGCAA+GGG 0.607102 3_1:+5591619 None:intergenic
TTGATAGAATTGCATTGGCG+CGG 0.607143 3_1:-5593785 Msa0345890:CDS
CCCCTCACTATGCTCTTCAC+CGG 0.607187 3_1:-5595248 Msa0345890:CDS
TTGTTATGGAGTTATATCCC+GGG 0.607715 3_1:-5592297 Msa0345890:CDS
AACCCCTTATGCAGAACCAA+TGG 0.608250 3_1:-5595278 Msa0345890:CDS
AGAATCATGATGAAAATGCA+TGG 0.608566 3_1:-5593018 Msa0345890:CDS
CAAATATAAGTGTGGATGCG+TGG 0.611641 3_1:-5595450 Msa0345890:intron
ATGATGAAAATGCATGGTCT+CGG 0.613127 3_1:-5593012 Msa0345890:CDS
GTAAAGGAGGCCATTCCGTA+GGG 0.617629 3_1:+5595366 None:intergenic
GAGCAAAGTTTATCCAGGGA+GGG 0.620110 3_1:-5591678 Msa0345890:CDS
AAGCCTAGTCTTCAAAGGCA+AGG 0.623583 3_1:-5592016 Msa0345890:CDS
TTTGGAATGCTCGGTCCCAA+TGG 0.625044 3_1:-5591593 Msa0345890:CDS
AACTGAGCAAAGTTTATCCA+GGG 0.626443 3_1:-5591682 Msa0345890:CDS
TCAGGTGTTTGCAGTAAAGG+AGG 0.631644 3_1:+5595353 None:intergenic
GAAAGCAGATATTCACCAAG+AGG 0.631790 3_1:-5591969 Msa0345890:intron
CATACCTTGCTGCACGCTAG+CGG 0.640696 3_1:+5594430 None:intergenic
CTATTACTAACCCTACGGAA+TGG 0.640962 3_1:-5595376 Msa0345890:CDS
TCTCATAAACTAATGATGTG+AGG 0.649010 3_1:+5593055 None:intergenic
GGGACTCATGGTATGCGGTG+GGG 0.650874 3_1:-5592214 Msa0345890:CDS
TACCGGTGAAGAGCATAGTG+AGG 0.652067 3_1:+5595246 None:intergenic
TCGACCGCTAGCGTGCAGCA+AGG 0.653408 3_1:-5594434 Msa0345890:intron
CCACGATATAAGGCAAACCC+GGG 0.667655 3_1:+5592280 None:intergenic
TTGAACAAATGCTGTACCTG+AGG 0.671899 3_1:+5590976 None:intergenic
CAGAGCCCAACAGAAACTGA+AGG 0.673870 3_1:+5593383 None:intergenic
CTATGGGGACTCATGGTATG+CGG 0.676111 3_1:-5592219 Msa0345890:CDS
TGAGCAAAGTTTATCCAGGG+AGG 0.678777 3_1:-5591679 Msa0345890:CDS
TATACCAAATTTACAGAACG+AGG 0.687523 3_1:+5593759 None:intergenic
GCCCAACAGAAACTGAAGGT+AGG 0.697888 3_1:+5593387 None:intergenic
AGCCACGTCAAACTTTAATG+GGG 0.711484 3_1:+5593312 None:intergenic
TACTATCTACAAAGTCAGTG+CGG 0.713074 3_1:-5594491 Msa0345890:CDS
ATGCGTGGAGAATGAATGTG+GGG 0.734476 3_1:-5595435 Msa0345890:CDS
CTTAACATTTGAAAACAGCG+AGG 0.746454 3_1:+5592714 None:intergenic
CCGGTGAAGAGCATAGTGAG+GGG 0.752191 3_1:+5595248 None:intergenic
GAAAATCCGTTCTAACAGCG+CGG 0.754339 3_1:+5595321 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACATATCTAAAATTTAT+TGG - chr3_1:5591173-5591192 Msa0345890:intron 10.0%
!!! TTAATTTTACTTTACTAACA+TGG - chr3_1:5593065-5593084 Msa0345890:intron 15.0%
!! ATTTGAATTATCTATATCAA+TGG + chr3_1:5593199-5593218 None:intergenic 15.0%
!! TATAGATAATTCAAATGTTA+TGG - chr3_1:5593203-5593222 Msa0345890:intron 15.0%
!! ATATATTTAATGTCAGTATA+TGG - chr3_1:5594159-5594178 Msa0345890:intron 15.0%
!! TTGTTCTATTAAATATGTTA+GGG - chr3_1:5594310-5594329 Msa0345890:intron 15.0%
!!! TTTTTCTTCTATTTTTGTAA+TGG - chr3_1:5595379-5595398 Msa0345890:CDS 15.0%
!! ATGTATCTTGAATAAAAAAT+TGG + chr3_1:5595460-5595479 None:intergenic 15.0%
!! AATTATATACAATTTCTCAA+CGG + chr3_1:5597165-5597184 None:intergenic 15.0%
!!! TGTATATAATTTTTTCCTTT+CGG - chr3_1:5597174-5597193 Msa0345890:intron 15.0%
!! GATATTTGTAAAGATAAGTT+AGG - chr3_1:5591132-5591151 Msa0345890:intron 20.0%
!! AGATATGTAAATGTAAACTT+TGG + chr3_1:5591164-5591183 None:intergenic 20.0%
!! TCTCAATAATCAATTTGATA+AGG - chr3_1:5592524-5592543 Msa0345890:intron 20.0%
!! AGAGATAAAATGATATTTGA+AGG - chr3_1:5593000-5593019 Msa0345890:CDS 20.0%
!! CACAAGAAGAAATTAAATTA+GGG + chr3_1:5593331-5593350 None:intergenic 20.0%
!! ACACAAGAAGAAATTAAATT+AGG + chr3_1:5593332-5593351 None:intergenic 20.0%
!!! TTTAGTTTATTGTTTTTCAC+TGG - chr3_1:5593897-5593916 Msa0345890:intron 20.0%
!! CTATATAAAGGTTATAGAAA+AGG - chr3_1:5593986-5594005 Msa0345890:CDS 20.0%
!! GTTGTTCTATTAAATATGTT+AGG - chr3_1:5594309-5594328 Msa0345890:intron 20.0%
!! AAGTAAGTTTACATACAATT+AGG + chr3_1:5594397-5594416 None:intergenic 20.0%
!!! AAAAACTTAGTTCATCTTTT+CGG - chr3_1:5595959-5595978 Msa0345890:intron 20.0%
!!! ATTTAGATTTAGGTTTCTAT+CGG + chr3_1:5596180-5596199 None:intergenic 20.0%
!! TTTCTATTCCATTTAGATTT+AGG + chr3_1:5596190-5596209 None:intergenic 20.0%
!! AATTATAATTGGAGGATTTA+AGG - chr3_1:5596507-5596526 Msa0345890:intron 20.0%
!! ATTATAATTGGAGGATTTAA+GGG - chr3_1:5596508-5596527 Msa0345890:intron 20.0%
!! AATTTAATCTATGAAATTGC+AGG - chr3_1:5596636-5596655 Msa0345890:intron 20.0%
!!! ATGCTTCTAAAACAATTTTA+AGG + chr3_1:5596742-5596761 None:intergenic 20.0%
!!! ATGATGAATGAATTTAAAAC+TGG + chr3_1:5596777-5596796 None:intergenic 20.0%
! GAAAAACATAGAAAGTAACA+AGG - chr3_1:5590716-5590735 Msa0345890:three_prime_UTR 25.0%
! TCAGTATGAAAGAATATGTT+AGG - chr3_1:5591796-5591815 Msa0345890:intron 25.0%
! TCAGTATGAAAGAATATGTT+AGG - chr3_1:5591796-5591815 Msa0345890:intron 25.0%
! TCAGTATGAAAGAATATGTT+AGG - chr3_1:5591796-5591815 Msa0345890:intron 25.0%
!!! CATATACTTTTAAGTGACAA+AGG + chr3_1:5592839-5592858 None:intergenic 25.0%
! AAGACATGAAACATCTAAAT+AGG + chr3_1:5593124-5593143 None:intergenic 25.0%
! TATCTATATCAATGGTACTT+GGG + chr3_1:5593191-5593210 None:intergenic 25.0%
! TTATCTATATCAATGGTACT+TGG + chr3_1:5593192-5593211 None:intergenic 25.0%
! TGACTTTGTAGATAGTAAAT+GGG + chr3_1:5593504-5593523 None:intergenic 25.0%
! GAAAATAACTAATATGTGCA+AGG - chr3_1:5593641-5593660 Msa0345890:intron 25.0%
! ATTCTAATCTTAGTGTCAAA+AGG - chr3_1:5593700-5593719 Msa0345890:intron 25.0%
!! TATTTTACGTAATACGTTGA+AGG - chr3_1:5594080-5594099 Msa0345890:intron 25.0%
!!! TATTTCCATATTGTTTTGAC+AGG - chr3_1:5594110-5594129 Msa0345890:intron 25.0%
! TTCTATTAAATATGTTAGGG+AGG - chr3_1:5594313-5594332 Msa0345890:intron 25.0%
! TCTATTAAATATGTTAGGGA+GGG - chr3_1:5594314-5594333 Msa0345890:intron 25.0%
! TGGGAAAATACACATTTAAA+TGG + chr3_1:5594452-5594471 None:intergenic 25.0%
!! TCACGTAATATCTTTTTATG+TGG - chr3_1:5594844-5594863 Msa0345890:intron 25.0%
! TAACCATGTAAATCTTGTTA+CGG - chr3_1:5594869-5594888 Msa0345890:intron 25.0%
! CTGTAAGAAATAATCCAATA+TGG + chr3_1:5595019-5595038 None:intergenic 25.0%
! AGATGAAATAAAACACGAAT+TGG + chr3_1:5595228-5595247 None:intergenic 25.0%
! TATAAACTTACAAATTTCGC+TGG - chr3_1:5595249-5595268 Msa0345890:CDS 25.0%
!! TCTCAATTATTTGACTTACT+TGG + chr3_1:5595488-5595507 None:intergenic 25.0%
! CAATCAAAAAACCAAAAGAA+AGG + chr3_1:5595651-5595670 None:intergenic 25.0%
! GATAGAAACCTAAATCTAAA+TGG - chr3_1:5596179-5596198 Msa0345890:intron 25.0%
!! AAAGACTTCTTTTATCAACA+TGG - chr3_1:5596434-5596453 Msa0345890:intron 25.0%
! TACCTCGAACAAATTATAAT+TGG - chr3_1:5596496-5596515 Msa0345890:intron 25.0%
! AGGAAATAATGATATTAACC+TGG - chr3_1:5596560-5596579 Msa0345890:intron 25.0%
! ATCGAACATTATCAATTCAA+GGG + chr3_1:5596690-5596709 None:intergenic 25.0%
! TATCGAACATTATCAATTCA+AGG + chr3_1:5596691-5596710 None:intergenic 25.0%
! ACGGTATGATTAATGAATTA+AGG + chr3_1:5596964-5596983 None:intergenic 25.0%
! AATGGAATATATACAAGCAT+GGG - chr3_1:5597069-5597088 Msa0345890:intron 25.0%
ATTTGAGTGAACAATGATGT+TGG - chr3_1:5591069-5591088 Msa0345890:intron 30.0%
CTGACAATGTGTTTATAAGT+GGG - chr3_1:5591256-5591275 Msa0345890:intron 30.0%
ATCTTAGATCTTAGAAATGG+TGG + chr3_1:5591331-5591350 None:intergenic 30.0%
!! ACCATTTCTAAGATCTAAGA+TGG - chr3_1:5591330-5591349 Msa0345890:intron 30.0%
ACCATCTTAGATCTTAGAAA+TGG + chr3_1:5591334-5591353 None:intergenic 30.0%
TACTAGACACATCTAAAAAC+TGG + chr3_1:5591611-5591630 None:intergenic 30.0%
GAAATGTGAAGACAAACATA+AGG - chr3_1:5592448-5592467 Msa0345890:intron 30.0%
GAACGTAGTTCATATATTTC+AGG + chr3_1:5592864-5592883 None:intergenic 30.0%
ATGTCAGGTTTAATAGAATG+TGG - chr3_1:5592903-5592922 Msa0345890:intron 30.0%
! TATAGCTGATAGCATGTTTT+AGG - chr3_1:5593095-5593114 Msa0345890:intron 30.0%
TCTTCTTGTGTGTAACAATA+TGG - chr3_1:5593341-5593360 Msa0345890:CDS 30.0%
GTATTCTTTCTTTGTGAACA+CGG - chr3_1:5593389-5593408 Msa0345890:CDS 30.0%
GCAACCATCATAATGTAATA+GGG - chr3_1:5593420-5593439 Msa0345890:intron 30.0%
CTGACTTTGTAGATAGTAAA+TGG + chr3_1:5593505-5593524 None:intergenic 30.0%
CTTGTAAGATATACGATAAC+AGG - chr3_1:5593619-5593638 Msa0345890:intron 30.0%
ATATTGTCGTGTTTCTTTCT+AGG - chr3_1:5593847-5593866 Msa0345890:CDS 30.0%
GTAAACGATGCTCTATATAA+AGG - chr3_1:5593974-5593993 Msa0345890:intron 30.0%
CATAACCTGTCAAAACAATA+TGG + chr3_1:5594118-5594137 None:intergenic 30.0%
TCAACCTATAAAAATGACAC+CGG - chr3_1:5594188-5594207 Msa0345890:intron 30.0%
TATACCAAATTTACAGAACG+AGG + chr3_1:5594242-5594261 None:intergenic 30.0%
TTTGGTATACACTCAAACTT+TGG - chr3_1:5594253-5594272 Msa0345890:intron 30.0%
TGCATCATAAATAACCTATC+AGG + chr3_1:5594514-5594533 None:intergenic 30.0%
ATATTACGTGAAGAATTGAG+AGG + chr3_1:5594835-5594854 None:intergenic 30.0%
AACCATGTAAATCTTGTTAC+GGG - chr3_1:5594870-5594889 Msa0345890:intron 30.0%
TCATGCTTATATGTTGATGT+AGG - chr3_1:5594916-5594935 Msa0345890:intron 30.0%
TCTCATAAACTAATGATGTG+AGG + chr3_1:5594946-5594965 None:intergenic 30.0%
AGAATCATGATGAAAATGCA+TGG - chr3_1:5594980-5594999 Msa0345890:intron 30.0%
! ATGCTGTGTTTTGTGATATT+TGG - chr3_1:5595067-5595086 Msa0345890:intron 30.0%
! TCTTGCTTTACGTTTCTTTT+TGG - chr3_1:5595127-5595146 Msa0345890:intron 30.0%
! AATTTCGCTGGCATTTTTAT+TGG - chr3_1:5595261-5595280 Msa0345890:CDS 30.0%
!!! TTCTATTTTTGTAATGGCAG+TGG - chr3_1:5595385-5595404 Msa0345890:CDS 30.0%
! GTTGCATATATAGGTGTTTT+TGG - chr3_1:5595407-5595426 Msa0345890:CDS 30.0%
TTTGATATCGACAAAACCTT+TGG + chr3_1:5595528-5595547 None:intergenic 30.0%
TGTTAACACATGACACAAAT+AGG + chr3_1:5595618-5595637 None:intergenic 30.0%
CTTGTACAATTTCTTCAGAA+GGG - chr3_1:5595671-5595690 Msa0345890:intron 30.0%
ATTGTTATGGAGTTATATCC+CGG - chr3_1:5595700-5595719 Msa0345890:intron 30.0%
TTCATATAACCCACGATATA+AGG + chr3_1:5595731-5595750 None:intergenic 30.0%
! TTTTCACAATCGTCTTTTAC+TGG - chr3_1:5595751-5595770 Msa0345890:intron 30.0%
! TCTTTTACTGGAGATACTAT+GGG - chr3_1:5595763-5595782 Msa0345890:intron 30.0%
! AATCCTCTTTTGTTCTTGAA+AGG - chr3_1:5595928-5595947 Msa0345890:intron 30.0%
AATCCTTTCAAGAACAAAAG+AGG + chr3_1:5595934-5595953 None:intergenic 30.0%
GTCATCATTTACACTTTAGA+CGG - chr3_1:5596236-5596255 Msa0345890:intron 30.0%
! ACTTCTTTTATCAACATGGT+TGG - chr3_1:5596438-5596457 Msa0345890:intron 30.0%
!! CTCCAATTATAATTTGTTCG+AGG + chr3_1:5596501-5596520 None:intergenic 30.0%
CTCGAACAAATTATAATTGG+AGG - chr3_1:5596499-5596518 Msa0345890:intron 30.0%
ATTGCAGGACATTGTAAATT+TGG - chr3_1:5596651-5596670 Msa0345890:intron 30.0%
ATGTTCGATATATGTCATGT+TGG - chr3_1:5596701-5596720 Msa0345890:intron 30.0%
GATGATTTACTCTTAATCGA+TGG - chr3_1:5596830-5596849 Msa0345890:intron 30.0%
TACGTAAAGTATGTACTCAT+TGG - chr3_1:5596871-5596890 Msa0345890:intron 30.0%
TTGTAATGCATACAGATGAT+AGG - chr3_1:5596985-5597004 Msa0345890:intron 30.0%
GACATAAGAACTGATATGAA+TGG - chr3_1:5597051-5597070 Msa0345890:intron 30.0%
GAATGGAATATATACAAGCA+TGG - chr3_1:5597068-5597087 Msa0345890:intron 30.0%
GGCAGACTTAAAAATCTTAA+AGG - chr3_1:5597251-5597270 Msa0345890:CDS 30.0%
ACTTCAACTTACTTGTGTTA+AGG + chr3_1:5597282-5597301 None:intergenic 30.0%
! AACACAAGTAAGTTGAAGTT+TGG - chr3_1:5597283-5597302 Msa0345890:five_prime_UTR 30.0%
AAGTTCGCAAGAGAACATTT+AGG - chr3_1:5590987-5591006 Msa0345890:CDS 35.0%
AGTTCGCAAGAGAACATTTA+GGG - chr3_1:5590988-5591007 Msa0345890:CDS 35.0%
CTTTGATCATTGAATGTGTG+AGG + chr3_1:5591029-5591048 None:intergenic 35.0%
CACACATTCAATGATCAAAG+TGG - chr3_1:5591029-5591048 Msa0345890:intron 35.0%
TATGTTAAAGAGTCCCACAT+CGG - chr3_1:5591221-5591240 Msa0345890:intron 35.0%
CCACTTATAAACACATTGTC+AGG + chr3_1:5591258-5591277 None:intergenic 35.0%
CCTGACAATGTGTTTATAAG+TGG - chr3_1:5591255-5591274 Msa0345890:intron 35.0%
AGATCTTAGAAATGGTGGTT+GGG + chr3_1:5591326-5591345 None:intergenic 35.0%
TAGATCTTAGAAATGGTGGT+TGG + chr3_1:5591327-5591346 None:intergenic 35.0%
! TGCTATCAGGTTTTCGTTAT+CGG - chr3_1:5591387-5591406 Msa0345890:intron 35.0%
TGTGTTAAAGAGTCACACAT+CGG - chr3_1:5591482-5591501 Msa0345890:intron 35.0%
! TGCTATCAGGTTTTCGTTAT+CGG - chr3_1:5591387-5591406 Msa0345890:intron 35.0%
TAGACACATCTAAAAACTGG+TGG + chr3_1:5591608-5591627 None:intergenic 35.0%
! TGCTATCAGGTTTTCGTTAT+CGG - chr3_1:5591387-5591406 Msa0345890:intron 35.0%
TGTGTTAAAGAGTCACACAT+CGG - chr3_1:5591482-5591501 Msa0345890:intron 35.0%
! TGCTATCAGGTTTTCGTTAT+CGG - chr3_1:5591387-5591406 Msa0345890:intron 35.0%
TGTGTTAAAGAGTCACACAT+CGG - chr3_1:5591482-5591501 Msa0345890:intron 35.0%
! TGCTATCAGGTTTTCGTTAT+CGG - chr3_1:5591387-5591406 Msa0345890:intron 35.0%
TGTGTTAAAGAGTCACACAT+CGG - chr3_1:5591482-5591501 Msa0345890:intron 35.0%
ATGCAGCACACTTCATATTA+TGG + chr3_1:5592371-5592390 None:intergenic 35.0%
GATAAGGCCAAATATAAGTG+TGG - chr3_1:5592540-5592559 Msa0345890:CDS 35.0%
TGAATGTGGGGTTCAATATT+CGG - chr3_1:5592575-5592594 Msa0345890:CDS 35.0%
!! TATTCGGATTTTGACCAAGT+TGG - chr3_1:5592591-5592610 Msa0345890:CDS 35.0%
TTGTCCTATTACTAACCCTA+CGG - chr3_1:5592617-5592636 Msa0345890:intron 35.0%
GGGTTTGGAAAATCAGAAAA+CGG + chr3_1:5592705-5592724 None:intergenic 35.0%
GTTCTGATAGTCATGTTGTT+AGG - chr3_1:5592880-5592899 Msa0345890:intron 35.0%
AAGACTGTAAAGAGAGAAAC+AGG + chr3_1:5593153-5593172 None:intergenic 35.0%
GGCAACCATCATAATGTAAT+AGG - chr3_1:5593419-5593438 Msa0345890:intron 35.0%
CGATCCCTATTACATTATGA+TGG + chr3_1:5593427-5593446 None:intergenic 35.0%
TACTATCTACAAAGTCAGTG+CGG - chr3_1:5593507-5593526 Msa0345890:intron 35.0%
TATGTGCAAGGATTTACTCA+TGG - chr3_1:5593653-5593672 Msa0345890:intron 35.0%
TGACAAGAATAATACCGTTC+AGG - chr3_1:5593756-5593775 Msa0345890:intron 35.0%
!!! AAAGCCGGTGTCATTTTTAT+AGG + chr3_1:5594195-5594214 None:intergenic 35.0%
CAATGCAATTCTATCAAAGC+CGG + chr3_1:5594210-5594229 None:intergenic 35.0%
GATTCCTCGTTCTGTAAATT+TGG - chr3_1:5594235-5594254 Msa0345890:intron 35.0%
ATTAAATATGTTAGGGAGGG+AGG - chr3_1:5594317-5594336 Msa0345890:intron 35.0%
TTAAATATGTTAGGGAGGGA+GGG - chr3_1:5594318-5594337 Msa0345890:intron 35.0%
! TAAGATTTTGTGCACCTGAT+AGG - chr3_1:5594497-5594516 Msa0345890:CDS 35.0%
GCTCTTATCATAATCGAAAC+TGG + chr3_1:5594554-5594573 None:intergenic 35.0%
TCTAGTATCTATATGCTTGC+AGG - chr3_1:5594579-5594598 Msa0345890:intron 35.0%
! CACAAACTCGAACAACATTT+TGG + chr3_1:5594644-5594663 None:intergenic 35.0%
! AATGTTGTTCGAGTTTGTGA+AGG - chr3_1:5594645-5594664 Msa0345890:intron 35.0%
TCGCATATCTATACACTTAC+AGG + chr3_1:5594760-5594779 None:intergenic 35.0%
GTATAGATATGCGAGTAAAG+CGG - chr3_1:5594766-5594785 Msa0345890:intron 35.0%
TATAGATATGCGAGTAAAGC+GGG - chr3_1:5594767-5594786 Msa0345890:intron 35.0%
ATGATGAAAATGCATGGTCT+CGG - chr3_1:5594986-5595005 Msa0345890:intron 35.0%
CAGCATGTAGATAACTGATA+TGG + chr3_1:5595053-5595072 None:intergenic 35.0%
AAAGCAAGAGAACAATTTGC+TGG + chr3_1:5595116-5595135 None:intergenic 35.0%
! AAAGAAAACAGCAGCATTGA+GGG + chr3_1:5595166-5595185 None:intergenic 35.0%
AAAAGAAAACAGCAGCATTG+AGG + chr3_1:5595167-5595186 None:intergenic 35.0%
!!! ATGCTGCTGTTTTCTTTTTC+AGG - chr3_1:5595169-5595188 Msa0345890:intron 35.0%
CTTAACATTTGAAAACAGCG+AGG + chr3_1:5595287-5595306 None:intergenic 35.0%
ATCTATCATCAAACCTGTAG+CGG + chr3_1:5595311-5595330 None:intergenic 35.0%
!!! TATATAGGTGTTTTTGGCAC+TGG - chr3_1:5595413-5595432 Msa0345890:CDS 35.0%
TGTGTCATGTGTTAACATGT+TGG - chr3_1:5595621-5595640 Msa0345890:intron 35.0%
!! ATGTTGGCTAACCTTTCTTT+TGG - chr3_1:5595637-5595656 Msa0345890:intron 35.0%
GCTTGTACAATTTCTTCAGA+AGG - chr3_1:5595670-5595689 Msa0345890:intron 35.0%
TTGTTATGGAGTTATATCCC+GGG - chr3_1:5595701-5595720 Msa0345890:intron 35.0%
! GTCTTTTACTGGAGATACTA+TGG - chr3_1:5595762-5595781 Msa0345890:intron 35.0%
! CTTTTACTGGAGATACTATG+GGG - chr3_1:5595764-5595783 Msa0345890:intron 35.0%
GATCTCAATGATAGCACAAA+TGG - chr3_1:5595808-5595827 Msa0345890:intron 35.0%
!! ATCGATCGAGTTTTATCAAC+AGG - chr3_1:5595895-5595914 Msa0345890:intron 35.0%
!! GAGTTTTATCAACAGGAAGT+TGG - chr3_1:5595902-5595921 Msa0345890:intron 35.0%
TTGGTGAATATCTGCTTTCT+CGG + chr3_1:5596028-5596047 None:intergenic 35.0%
TCTACAAGATGATAGAGATC+AGG + chr3_1:5596102-5596121 None:intergenic 35.0%
ATCTTGTAGAGTTCACTCAT+CGG - chr3_1:5596112-5596131 Msa0345890:intron 35.0%
! AGATTTAGGTTTCTATCGGA+AGG + chr3_1:5596176-5596195 None:intergenic 35.0%
ATTTACACTTTAGACGGAGA+AGG - chr3_1:5596242-5596261 Msa0345890:intron 35.0%
AAACTGAGCAAAGTTTATCC+AGG - chr3_1:5596315-5596334 Msa0345890:intron 35.0%
AACTGAGCAAAGTTTATCCA+GGG - chr3_1:5596316-5596335 Msa0345890:intron 35.0%
TCACTGATATACTATTTGCC+AGG + chr3_1:5596581-5596600 None:intergenic 35.0%
CATCTGTATGCATTACAAGA+CGG + chr3_1:5596983-5597002 None:intergenic 35.0%
TAAGTCTGCCATAAAAGAGT+AGG + chr3_1:5597241-5597260 None:intergenic 35.0%
TCAACTTACTTGTGTTAAGG+CGG + chr3_1:5597279-5597298 None:intergenic 35.0%
TAGGAAGAACTTAACCTTCC+AGG - chr3_1:5590802-5590821 Msa0345890:intron 40.0%
GATAACGAAAACCTGATAGC+AGG + chr3_1:5591388-5591407 None:intergenic 40.0%
! GCTATCAGGTTTTCGTTATC+GGG - chr3_1:5591388-5591407 Msa0345890:intron 40.0%
GATAACGAAAACCTGATAGC+AGG + chr3_1:5591388-5591407 None:intergenic 40.0%
! GCTATCAGGTTTTCGTTATC+GGG - chr3_1:5591388-5591407 Msa0345890:intron 40.0%
CACATCTAAAAACTGGTGGA+TGG + chr3_1:5591604-5591623 None:intergenic 40.0%
AACGAAAACCTGATAGCAGA+TGG + chr3_1:5591661-5591680 None:intergenic 40.0%
! GCTATCAGGTTTTCGTTATC+GGG - chr3_1:5591388-5591407 Msa0345890:intron 40.0%
GATAACGAAAACCTGATAGC+AGG + chr3_1:5591388-5591407 None:intergenic 40.0%
! GCTATCAGGTTTTCGTTATC+GGG - chr3_1:5591388-5591407 Msa0345890:intron 40.0%
GATAACGAAAACCTGATAGC+AGG + chr3_1:5591388-5591407 None:intergenic 40.0%
! GCTATCAGGTTTTCGTTATC+GGG - chr3_1:5591388-5591407 Msa0345890:intron 40.0%
! ATGAAGCACTAACACAGACA+CGG - chr3_1:5592278-5592297 Msa0345890:CDS 40.0%
TACCATTGACACGTGAACAT+CGG - chr3_1:5592311-5592330 Msa0345890:CDS 40.0%
GCAATATACACAGCACGAAT+GGG + chr3_1:5592485-5592504 None:intergenic 40.0%
AGCAATATACACAGCACGAA+TGG + chr3_1:5592486-5592505 None:intergenic 40.0%
ATTCGTGCTGTGTATATTGC+TGG - chr3_1:5592485-5592504 Msa0345890:intron 40.0%
CACGCATCCACACTTATATT+TGG + chr3_1:5592550-5592569 None:intergenic 40.0%
CAAATATAAGTGTGGATGCG+TGG - chr3_1:5592548-5592567 Msa0345890:CDS 40.0%
! CATTCCGTAGGGTTAGTAAT+AGG + chr3_1:5592624-5592643 None:intergenic 40.0%
CTATTACTAACCCTACGGAA+TGG - chr3_1:5592622-5592641 Msa0345890:intron 40.0%
ACCGGTACTAATCAGTCTTT+CGG - chr3_1:5592768-5592787 Msa0345890:CDS 40.0%
TCCGAAAGACTGATTAGTAC+CGG + chr3_1:5592772-5592791 None:intergenic 40.0%
ACTAATCAGTCTTTCGGAGA+AGG - chr3_1:5592774-5592793 Msa0345890:CDS 40.0%
AGTCATGTTGTTAGGATGTC+AGG - chr3_1:5592888-5592907 Msa0345890:intron 40.0%
! CTCTCTTTACAGTCTTGTCA+AGG - chr3_1:5593157-5593176 Msa0345890:intron 40.0%
TAGTTTCGCGACAAATGTCT+TGG - chr3_1:5593227-5593246 Msa0345890:intron 40.0%
TTCTTTGTGAACACGGATGA+TGG - chr3_1:5593396-5593415 Msa0345890:CDS 40.0%
TCTTTGTGAACACGGATGAT+GGG - chr3_1:5593397-5593416 Msa0345890:CDS 40.0%
! GACAGAGTACACCAATTTTC+TGG - chr3_1:5593455-5593474 Msa0345890:intron 40.0%
CGAGCAATTATTGTCCTGAA+CGG + chr3_1:5593773-5593792 None:intergenic 40.0%
TGTCGTGTTTCTTTCTAGGT+AGG - chr3_1:5593851-5593870 Msa0345890:CDS 40.0%
TAAGATGTGCTCAGGCTTTA+CGG - chr3_1:5593927-5593946 Msa0345890:intron 40.0%
ATGGCGTAATAGTTCTTCTG+AGG - chr3_1:5593952-5593971 Msa0345890:intron 40.0%
CAGATCAATGAGATAACTGC+AGG - chr3_1:5594022-5594041 Msa0345890:CDS 40.0%
! CGGCTTTGATAGAATTGCAT+TGG - chr3_1:5594208-5594227 Msa0345890:intron 40.0%
! TTGATAGAATTGCATTGGCG+CGG - chr3_1:5594213-5594232 Msa0345890:intron 40.0%
GGTTATTTATGATGCAGCAC+TGG - chr3_1:5594518-5594537 Msa0345890:CDS 40.0%
CATAATCGAAACTGGAACCT+CGG + chr3_1:5594546-5594565 None:intergenic 40.0%
TTCCTACCTTCAGTTTCTGT+TGG - chr3_1:5594609-5594628 Msa0345890:intron 40.0%
TCCTACCTTCAGTTTCTGTT+GGG - chr3_1:5594610-5594629 Msa0345890:intron 40.0%
! TTTAATGGGGTCTCAGGTTT+TGG + chr3_1:5594676-5594695 None:intergenic 40.0%
TCAAACTTTAATGGGGTCTC+AGG + chr3_1:5594682-5594701 None:intergenic 40.0%
CACTTACAGGAAAAAGTTGC+AGG + chr3_1:5594747-5594766 None:intergenic 40.0%
ATAGATATGCGAGTAAAGCG+GGG - chr3_1:5594768-5594787 Msa0345890:intron 40.0%
GTCCCGTAACAAGATTTACA+TGG + chr3_1:5594875-5594894 None:intergenic 40.0%
! GTGATATTTGGCTCAGTCAT+AGG - chr3_1:5595079-5595098 Msa0345890:intron 40.0%
! ATTTGGCTCAGTCATAGGTA+TGG - chr3_1:5595084-5595103 Msa0345890:intron 40.0%
! AAGAAAACAGCAGCATTGAG+GGG + chr3_1:5595165-5595184 None:intergenic 40.0%
TCAAATGTTAAGACCGCTAC+AGG - chr3_1:5595295-5595314 Msa0345890:CDS 40.0%
ATGGCAGTGGTTGCATATAT+AGG - chr3_1:5595398-5595417 Msa0345890:CDS 40.0%
TATCGACAAAACCTTTGGCT+AGG + chr3_1:5595523-5595542 None:intergenic 40.0%
GTACAATTTCTTCAGAAGGG+TGG - chr3_1:5595674-5595693 Msa0345890:intron 40.0%
AGAAGGGTGGATCATTGTTA+TGG - chr3_1:5595687-5595706 Msa0345890:intron 40.0%
TAGCACAAATGGCATGAAAG+AGG - chr3_1:5595819-5595838 Msa0345890:intron 40.0%
GGTCTTGATTATCATGTTCG+TGG - chr3_1:5595840-5595859 Msa0345890:intron 40.0%
TGATTATCATGTTCGTGGAG+TGG - chr3_1:5595845-5595864 Msa0345890:intron 40.0%
GAAAGCAGATATTCACCAAG+AGG - chr3_1:5596029-5596048 Msa0345890:intron 40.0%
TGCAAGCAAAACTAACCTCT+TGG + chr3_1:5596047-5596066 None:intergenic 40.0%
ACGATTGCATGATTCGTAGT+AGG + chr3_1:5596288-5596307 None:intergenic 40.0%
! ATTCCAAAGCATTCTCCTTC+AGG + chr3_1:5596393-5596412 None:intergenic 40.0%
TGTGAGCTCAGGAAAATGAA+TGG + chr3_1:5596536-5596555 None:intergenic 40.0%
! TTTTCCTGAGCTCACATAAC+AGG - chr3_1:5596540-5596559 Msa0345890:intron 40.0%
ATTTCCTGTTATGTGAGCTC+AGG + chr3_1:5596547-5596566 None:intergenic 40.0%
CGATATATGTCATGTTGGAC+TGG - chr3_1:5596706-5596725 Msa0345890:intron 40.0%
TTGAACAAATGCTGTACCTG+AGG + chr3_1:5597025-5597044 None:intergenic 40.0%
TCAGGTACAGCATTTGTTCA+AGG - chr3_1:5597024-5597043 Msa0345890:intron 40.0%
AATTCCAGCTTACTCATGCT+GGG + chr3_1:5597103-5597122 None:intergenic 40.0%
AAATTCCAGCTTACTCATGC+TGG + chr3_1:5597104-5597123 None:intergenic 40.0%
CAGCAAGCTAAAATACCGAA+AGG + chr3_1:5597192-5597211 None:intergenic 40.0%
!!! TTCGGTATTTTAGCTTGCTG+TGG - chr3_1:5597192-5597211 Msa0345890:intron 40.0%
!!! TCGGTATTTTAGCTTGCTGT+GGG - chr3_1:5597193-5597212 Msa0345890:intron 40.0%
!!! AGAGAGCACCTACTCTTTTA+TGG - chr3_1:5597230-5597249 Msa0345890:CDS 40.0%
TTGGCTCACTCACATGCTAT+TGG - chr3_1:5591192-5591211 Msa0345890:intron 45.0%
TAAAGAGTCCCACATCGGAT+AGG - chr3_1:5591226-5591245 Msa0345890:intron 45.0%
CTAACACAACCCCACAAAAC+CGG + chr3_1:5591302-5591321 None:intergenic 45.0%
AACGAAAACCTGATAGCAGG+TGG + chr3_1:5591385-5591404 None:intergenic 45.0%
ATCTGGTGCATGGACACAAA+TGG + chr3_1:5591439-5591458 None:intergenic 45.0%
AACGAAAACCTGATAGCAGG+TGG + chr3_1:5591385-5591404 None:intergenic 45.0%
! ATGGACACACAAATGGTGGA+TGG + chr3_1:5591690-5591709 None:intergenic 45.0%
AACGAAAACCTGATAGCAGG+TGG + chr3_1:5591385-5591404 None:intergenic 45.0%
! ATCTGGAGCATGGACACAAA+TGG + chr3_1:5591917-5591936 None:intergenic 45.0%
AACGAAAACCTGATAGCAGG+TGG + chr3_1:5591385-5591404 None:intergenic 45.0%
! ATCTGGAGCATGGACACAAA+TGG + chr3_1:5591917-5591936 None:intergenic 45.0%
GATGCGTGGAGAATGAATGT+GGG - chr3_1:5592562-5592581 Msa0345890:CDS 45.0%
ATGCGTGGAGAATGAATGTG+GGG - chr3_1:5592563-5592582 Msa0345890:CDS 45.0%
TAATAGGACAAGCGCCAACT+TGG + chr3_1:5592608-5592627 None:intergenic 45.0%
TCAGGTGTTTGCAGTAAAGG+AGG + chr3_1:5592648-5592667 None:intergenic 45.0%
GGATCAGGTGTTTGCAGTAA+AGG + chr3_1:5592651-5592670 None:intergenic 45.0%
GAAAATCCGTTCTAACAGCG+CGG + chr3_1:5592680-5592699 None:intergenic 45.0%
!! TTGGTTCTGCATAAGGGGTT+TGG + chr3_1:5592720-5592739 None:intergenic 45.0%
AACCCCTTATGCAGAACCAA+TGG - chr3_1:5592720-5592739 Msa0345890:CDS 45.0%
!! AGCCATTGGTTCTGCATAAG+GGG + chr3_1:5592725-5592744 None:intergenic 45.0%
!! GAGCCATTGGTTCTGCATAA+GGG + chr3_1:5592726-5592745 None:intergenic 45.0%
!! TGAGCCATTGGTTCTGCATA+AGG + chr3_1:5592727-5592746 None:intergenic 45.0%
CTTTGTGAACACGGATGATG+GGG - chr3_1:5593398-5593417 Msa0345890:CDS 45.0%
GAAAGCAGGCTCCAGAAAAT+TGG + chr3_1:5593469-5593488 None:intergenic 45.0%
!! GGAAGCTCTGAAAAGAAAGC+AGG + chr3_1:5593483-5593502 None:intergenic 45.0%
GCTAGAGTTAAGATGTGCTC+AGG - chr3_1:5593919-5593938 Msa0345890:intron 45.0%
GACCCCATTAAAGTTTGACG+TGG - chr3_1:5594684-5594703 Msa0345890:intron 45.0%
TAGGCGGTCTCTTCTTTACA+TGG - chr3_1:5594716-5594735 Msa0345890:intron 45.0%
AGGCGGTCTCTTCTTTACAT+GGG - chr3_1:5594717-5594736 Msa0345890:intron 45.0%
AAAATGCATGGTCTCGGTGA+TGG - chr3_1:5594992-5595011 Msa0345890:intron 45.0%
AAATGCATGGTCTCGGTGAT+GGG - chr3_1:5594993-5595012 Msa0345890:intron 45.0%
!! TTTGGCACTGGTCTATTAGC+TGG - chr3_1:5595425-5595444 Msa0345890:CDS 45.0%
ATGATGTGCTACCTAGCCAA+AGG - chr3_1:5595509-5595528 Msa0345890:intron 45.0%
! TTCGGAAGCCTAGTCTTCAA+AGG - chr3_1:5595977-5595996 Msa0345890:intron 45.0%
! AAGCCTAGTCTTCAAAGGCA+AGG - chr3_1:5595982-5596001 Msa0345890:intron 45.0%
! GATCCTTGCCTTTGAAGACT+AGG + chr3_1:5595988-5596007 None:intergenic 45.0%
TACACTTTAGACGGAGAAGG+TGG - chr3_1:5596245-5596264 Msa0345890:intron 45.0%
TGAGCAAAGTTTATCCAGGG+AGG - chr3_1:5596319-5596338 Msa0345890:intron 45.0%
GAGCAAAGTTTATCCAGGGA+GGG - chr3_1:5596320-5596339 Msa0345890:intron 45.0%
AAAGTTTATCCAGGGAGGGA+TGG - chr3_1:5596324-5596343 Msa0345890:intron 45.0%
TTATCCCTTGCTTTGCCTGA+AGG - chr3_1:5596375-5596394 Msa0345890:intron 45.0%
TTCTCCTTCAGGCAAAGCAA+GGG + chr3_1:5596382-5596401 None:intergenic 45.0%
ATTCTCCTTCAGGCAAAGCA+AGG + chr3_1:5596383-5596402 None:intergenic 45.0%
TTGCCTGAAGGAGAATGCTT+TGG - chr3_1:5596387-5596406 Msa0345890:intron 45.0%
!! GGAGAATGCTTTGGAATGCT+CGG - chr3_1:5596396-5596415 Msa0345890:intron 45.0%
GAAGTCTTTCCAGCACCATT+GGG + chr3_1:5596423-5596442 None:intergenic 45.0%
AGAAGTCTTTCCAGCACCAT+TGG + chr3_1:5596424-5596443 None:intergenic 45.0%
ACAAATGCTGTACCTGAGGT+TGG + chr3_1:5597021-5597040 None:intergenic 45.0%
ATTCCAGCTTACTCATGCTG+GGG + chr3_1:5597102-5597121 None:intergenic 45.0%
TTGCTGTGGGAAATCTTGAC+AGG - chr3_1:5597206-5597225 Msa0345890:CDS 45.0%
!! AATATTATTAAAACAAATTT+GGG + chr3_1:5594471-5594490 None:intergenic 5.0%
!! AAATATTATTAAAACAAATT+TGG + chr3_1:5594472-5594491 None:intergenic 5.0%
!!! AAATTTGTTTTAATAATATT+TGG - chr3_1:5594471-5594490 Msa0345890:CDS 5.0%
!!! AATTTGTTTTAATAATATTT+GGG - chr3_1:5594472-5594491 Msa0345890:CDS 5.0%
GTTTGCTTGAGTCCAGAAGC+TGG + chr3_1:5590774-5590793 None:intergenic 50.0%
CTCAAGCAAACGCGCTTCTT+AGG - chr3_1:5590783-5590802 Msa0345890:CDS 50.0%
GAGAGAGAGAGTAACCTGGA+AGG + chr3_1:5590819-5590838 None:intergenic 50.0%
GAGAGAGAGAGAGAGTAACC+TGG + chr3_1:5590823-5590842 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - chr3_1:5591289-5591308 Msa0345890:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr3_1:5591300-5591319 Msa0345890:intron 50.0%
!! AATGGTGGATGGCCCACAAA+TGG + chr3_1:5591421-5591440 None:intergenic 50.0%
! GCATGGACACAAATGGTGGA+TGG + chr3_1:5591432-5591451 None:intergenic 50.0%
TGGTGCATGGACACAAATGG+TGG + chr3_1:5591436-5591455 None:intergenic 50.0%
ATGTCCAGTCCTAGACGTGA+GGG - chr3_1:5591457-5591476 Msa0345890:intron 50.0%
TAACACACACCCTCACGTCT+AGG + chr3_1:5591469-5591488 None:intergenic 50.0%
CCTGATAGCAGATGGTCCAA+CGG + chr3_1:5591653-5591672 None:intergenic 50.0%
GAGCATGGACACACAAATGG+TGG + chr3_1:5591694-5591713 None:intergenic 50.0%
CTGGAGCATGGACACACAAA+TGG + chr3_1:5591697-5591716 None:intergenic 50.0%
ATGTCCAGTCCTAGACGTGA+GGG - chr3_1:5591457-5591476 Msa0345890:intron 50.0%
TAACACACACCCTCACGTCT+AGG + chr3_1:5591469-5591488 None:intergenic 50.0%
! GCATGGACACAAATGGTGGA+TGG + chr3_1:5591432-5591451 None:intergenic 50.0%
TGGAGCATGGACACAAATGG+TGG + chr3_1:5591914-5591933 None:intergenic 50.0%
ATGTCCAGTCCTAGACGTGA+GGG - chr3_1:5591457-5591476 Msa0345890:intron 50.0%
TAACACACACCCTCACGTCT+AGG + chr3_1:5591469-5591488 None:intergenic 50.0%
! GCATGGACACAAATGGTGGA+TGG + chr3_1:5591432-5591451 None:intergenic 50.0%
TGGAGCATGGACACAAATGG+TGG + chr3_1:5591914-5591933 None:intergenic 50.0%
ATGTCCAGTCCTAGACGTGA+GGG - chr3_1:5591457-5591476 Msa0345890:intron 50.0%
TAACACACACCCTCACGTCT+AGG + chr3_1:5591469-5591488 None:intergenic 50.0%
TGCCGATGTTCACGTGTCAA+TGG + chr3_1:5592316-5592335 None:intergenic 50.0%
GGATGCGTGGAGAATGAATG+TGG - chr3_1:5592561-5592580 Msa0345890:CDS 50.0%
GTAAAGGAGGCCATTCCGTA+GGG + chr3_1:5592635-5592654 None:intergenic 50.0%
AGTAAAGGAGGCCATTCCGT+AGG + chr3_1:5592636-5592655 None:intergenic 50.0%
ACGATACCGCGCTGTTAGAA+CGG - chr3_1:5592671-5592690 Msa0345890:intron 50.0%
! ACCGGTGAAGAGCATAGTGA+GGG + chr3_1:5592754-5592773 None:intergenic 50.0%
! TACCGGTGAAGAGCATAGTG+AGG + chr3_1:5592755-5592774 None:intergenic 50.0%
CTAGCGGTCGATATCTGAAC+AGG + chr3_1:5593555-5593574 None:intergenic 50.0%
GTGCTCAGGCTTTACGGTTA+TGG - chr3_1:5593933-5593952 Msa0345890:intron 50.0%
GCCCAACAGAAACTGAAGGT+AGG + chr3_1:5594614-5594633 None:intergenic 50.0%
CAGAGCCCAACAGAAACTGA+AGG + chr3_1:5594618-5594637 None:intergenic 50.0%
CTTCAGTTTCTGTTGGGCTC+TGG - chr3_1:5594616-5594635 Msa0345890:intron 50.0%
CCACGATATAAGGCAAACCC+GGG + chr3_1:5595721-5595740 None:intergenic 50.0%
CCCACGATATAAGGCAAACC+CGG + chr3_1:5595722-5595741 None:intergenic 50.0%
CCGGGTTTGCCTTATATCGT+GGG - chr3_1:5595719-5595738 Msa0345890:intron 50.0%
GGAGATACTATGGGGACTCA+TGG - chr3_1:5595772-5595791 Msa0345890:intron 50.0%
CTATGGGGACTCATGGTATG+CGG - chr3_1:5595779-5595798 Msa0345890:intron 50.0%
! CTATCGGAAGGTGTGTGTTG+TGG + chr3_1:5596164-5596183 None:intergenic 50.0%
TGGTAACCCGGCGAAATTTG+CGG - chr3_1:5596344-5596363 Msa0345890:intron 50.0%
TCTCTCACCGCAAATTTCGC+CGG + chr3_1:5596354-5596373 None:intergenic 50.0%
! TTTGGAATGCTCGGTCCCAA+TGG - chr3_1:5596405-5596424 Msa0345890:intron 50.0%
GGTCTTACAAAGCCAACCTC+AGG - chr3_1:5597006-5597025 Msa0345890:intron 50.0%
TTCCAGCTTACTCATGCTGG+GGG + chr3_1:5597101-5597120 None:intergenic 50.0%
GTCCCACATCGGATAGGAGA+TGG - chr3_1:5591232-5591251 Msa0345890:intron 55.0%
GGCCATCTCCTATCCGATGT+GGG + chr3_1:5591237-5591256 None:intergenic 55.0%
AGGCCATCTCCTATCCGATG+TGG + chr3_1:5591238-5591257 None:intergenic 55.0%
GCAATCCTCACCTCACAAGC+CGG - chr3_1:5591280-5591299 Msa0345890:intron 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr3_1:5591288-5591307 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr3_1:5591288-5591307 Msa0345890:intron 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - chr3_1:5591290-5591309 Msa0345890:intron 55.0%
AGCCTCCTCCATGATCCGTT+GGG - chr3_1:5591359-5591378 Msa0345890:intron 55.0%
ATCGGGCCATCCACCATTTG+TGG - chr3_1:5591405-5591424 Msa0345890:intron 55.0%
TCGGGCCATCCACCATTTGT+GGG - chr3_1:5591406-5591425 Msa0345890:intron 55.0%
! GATGGCCCACAAATGGTGGA+TGG + chr3_1:5591414-5591433 None:intergenic 55.0%
AGGACTGGACATCTGGTGCA+TGG + chr3_1:5591449-5591468 None:intergenic 55.0%
! CACGTCTAGGACTGGACATC+TGG + chr3_1:5591456-5591475 None:intergenic 55.0%
GATGTCCAGTCCTAGACGTG+AGG - chr3_1:5591456-5591475 Msa0345890:intron 55.0%
AGCCTCCTCCATGATCCGTT+GGG - chr3_1:5591359-5591378 Msa0345890:intron 55.0%
GATGGTCCAACGGATCATGG+AGG + chr3_1:5591643-5591662 None:intergenic 55.0%
GCAGATGGTCCAACGGATCA+TGG + chr3_1:5591646-5591665 None:intergenic 55.0%
CCGTTGGACCATCTGCTATC+AGG - chr3_1:5591650-5591669 Msa0345890:CDS 55.0%
! AGGACTGGACATCTGGAGCA+TGG + chr3_1:5591709-5591728 None:intergenic 55.0%
! CACGTCTAGGACTGGACATC+TGG + chr3_1:5591456-5591475 None:intergenic 55.0%
GATGTCCAGTCCTAGACGTG+AGG - chr3_1:5591456-5591475 Msa0345890:intron 55.0%
CCTGATAGCAGGTGGCTCAA+CGG + chr3_1:5591873-5591892 None:intergenic 55.0%
! AGGACTGGACATCTGGAGCA+TGG + chr3_1:5591709-5591728 None:intergenic 55.0%
! CACGTCTAGGACTGGACATC+TGG + chr3_1:5591456-5591475 None:intergenic 55.0%
GATGTCCAGTCCTAGACGTG+AGG - chr3_1:5591456-5591475 Msa0345890:intron 55.0%
AGCCTCCTCCATGATCCGTT+GGG - chr3_1:5591359-5591378 Msa0345890:intron 55.0%
! AGGACTGGACATCTGGAGCA+TGG + chr3_1:5591709-5591728 None:intergenic 55.0%
! CACGTCTAGGACTGGACATC+TGG + chr3_1:5591456-5591475 None:intergenic 55.0%
GATGTCCAGTCCTAGACGTG+AGG - chr3_1:5591456-5591475 Msa0345890:intron 55.0%
GTTCTAACAGCGCGGTATCG+TGG + chr3_1:5592672-5592691 None:intergenic 55.0%
AGTGAGGGGACATGAGCCAT+TGG + chr3_1:5592739-5592758 None:intergenic 55.0%
! CCGGTGAAGAGCATAGTGAG+GGG + chr3_1:5592753-5592772 None:intergenic 55.0%
CCCCTCACTATGCTCTTCAC+CGG - chr3_1:5592750-5592769 Msa0345890:CDS 55.0%
CATACCTTGCTGCACGCTAG+CGG + chr3_1:5593571-5593590 None:intergenic 55.0%
!! GTCTCGGTGATGGGCCATAT+TGG - chr3_1:5595002-5595021 Msa0345890:intron 55.0%
CCCGGGTTTGCCTTATATCG+TGG - chr3_1:5595718-5595737 Msa0345890:intron 55.0%
CTCTCACCGCAAATTTCGCC+GGG + chr3_1:5596353-5596372 None:intergenic 55.0%
CCAGAAGCTGGCAGGTTCGT+TGG + chr3_1:5590762-5590781 None:intergenic 60.0%
CCAACGAACCTGCCAGCTTC+TGG - chr3_1:5590759-5590778 Msa0345890:CDS 60.0%
GCTTGAGTCCAGAAGCTGGC+AGG + chr3_1:5590770-5590789 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG + chr3_1:5591293-5591312 None:intergenic 60.0%
GAGCCTCCTCCATGATCCGT+TGG - chr3_1:5591358-5591377 Msa0345890:intron 60.0%
CCTGATAGCAGGTGGCCCAA+CGG + chr3_1:5591377-5591396 None:intergenic 60.0%
GGTGGATGGCCCACAAATGG+TGG + chr3_1:5591418-5591437 None:intergenic 60.0%
! CACACCCTCACGTCTAGGAC+TGG + chr3_1:5591464-5591483 None:intergenic 60.0%
GAGCCTCCTCCATGATCCGT+TGG - chr3_1:5591358-5591377 Msa0345890:intron 60.0%
CCTGATAGCAGGTGGCCCAA+CGG + chr3_1:5591377-5591396 None:intergenic 60.0%
GAGCCTCCTCCATGATCCGT+TGG - chr3_1:5591358-5591377 Msa0345890:intron 60.0%
GGTCCAACGGATCATGGAGG+AGG + chr3_1:5591640-5591659 None:intergenic 60.0%
! CACACCCTCACGTCTAGGAC+TGG + chr3_1:5591464-5591483 None:intergenic 60.0%
CCGTTGAGCCACCTGCTATC+AGG - chr3_1:5591870-5591889 Msa0345890:intron 60.0%
! CACACCCTCACGTCTAGGAC+TGG + chr3_1:5591464-5591483 None:intergenic 60.0%
GAGCCTCCTCCATGATCCGT+TGG - chr3_1:5591358-5591377 Msa0345890:intron 60.0%
CCTGATAGCAGGTGGCCCAA+CGG + chr3_1:5591377-5591396 None:intergenic 60.0%
! CACACCCTCACGTCTAGGAC+TGG + chr3_1:5591464-5591483 None:intergenic 60.0%
ACAGCGCGGTATCGTGGATC+AGG + chr3_1:5592666-5592685 None:intergenic 60.0%
TTAGGGAGGGAGGGAGAGAG+AGG - chr3_1:5594327-5594346 Msa0345890:intron 60.0%
TAGGGAGGGAGGGAGAGAGA+GGG - chr3_1:5594328-5594347 Msa0345890:intron 60.0%
! ATGATGCAGCACTGGAGCCG+AGG - chr3_1:5594526-5594545 Msa0345890:CDS 60.0%
! GCGAGTAAAGCGGGGAGTGT+TGG - chr3_1:5594776-5594795 Msa0345890:CDS 60.0%
TGGGGACTCATGGTATGCGG+TGG - chr3_1:5595782-5595801 Msa0345890:intron 60.0%
GGGGACTCATGGTATGCGGT+GGG - chr3_1:5595783-5595802 Msa0345890:intron 60.0%
GGGACTCATGGTATGCGGTG+GGG - chr3_1:5595784-5595803 Msa0345890:intron 60.0%
TCCAGGGAGGGATGGTAACC+CGG - chr3_1:5596332-5596351 Msa0345890:intron 60.0%
ATGCTCGGTCCCAATGGTGC+TGG - chr3_1:5596411-5596430 Msa0345890:intron 60.0%
TGCCCCCAGCATGAGTAAGC+TGG - chr3_1:5597096-5597115 Msa0345890:intron 60.0%
GGCCCAACGGATCATGGAGG+AGG + chr3_1:5591364-5591383 None:intergenic 65.0%
GGTGGCCCAACGGATCATGG+AGG + chr3_1:5591367-5591386 None:intergenic 65.0%
GCAGGTGGCCCAACGGATCA+TGG + chr3_1:5591370-5591389 None:intergenic 65.0%
CCGTTGGGCCACCTGCTATC+AGG - chr3_1:5591374-5591393 Msa0345890:intron 65.0%
GGCCCAACGGATCATGGAGG+AGG + chr3_1:5591364-5591383 None:intergenic 65.0%
GGTGGCCCAACGGATCATGG+AGG + chr3_1:5591367-5591386 None:intergenic 65.0%
GCAGGTGGCCCAACGGATCA+TGG + chr3_1:5591370-5591389 None:intergenic 65.0%
CCGTTGGGCCACCTGCTATC+AGG - chr3_1:5591374-5591393 Msa0345890:intron 65.0%
GGCCCAACGGATCATGGAGG+AGG + chr3_1:5591364-5591383 None:intergenic 65.0%
GGTGGCCCAACGGATCATGG+AGG + chr3_1:5591367-5591386 None:intergenic 65.0%
GCAGGTGGCCCAACGGATCA+TGG + chr3_1:5591370-5591389 None:intergenic 65.0%
CCGTTGGGCCACCTGCTATC+AGG - chr3_1:5591374-5591393 Msa0345890:intron 65.0%
TCGACCGCTAGCGTGCAGCA+AGG - chr3_1:5593564-5593583 Msa0345890:intron 65.0%
GCCGGGTTACCATCCCTCCC+TGG + chr3_1:5596336-5596355 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 5590708 5597312 5590708 ID=Msa0345890;Name=Msa0345890
chr3_1 mRNA 5590708 5597312 5590708 ID=Msa0345890-mRNA-1;Parent=Msa0345890;Name=Msa0345890-mRNA-1;_AED=0.15;_eAED=0.16;_QI=32|0.71|0.66|1|0.71|0.66|15|51|649
chr3_1 exon 5590708 5590815 5590708 ID=Msa0345890-mRNA-1:exon:1677;Parent=Msa0345890-mRNA-1
chr3_1 exon 5590928 5591020 5590928 ID=Msa0345890-mRNA-1:exon:1676;Parent=Msa0345890-mRNA-1
chr3_1 exon 5591565 5591765 5591565 ID=Msa0345890-mRNA-1:exon:1675;Parent=Msa0345890-mRNA-1
chr3_1 exon 5591970 5592070 5591970 ID=Msa0345890-mRNA-1:exon:1674;Parent=Msa0345890-mRNA-1
chr3_1 exon 5592101 5592331 5592101 ID=Msa0345890-mRNA-1:exon:1673;Parent=Msa0345890-mRNA-1
chr3_1 exon 5592532 5592615 5592532 ID=Msa0345890-mRNA-1:exon:1672;Parent=Msa0345890-mRNA-1
chr3_1 exon 5592704 5592829 5592704 ID=Msa0345890-mRNA-1:exon:1671;Parent=Msa0345890-mRNA-1
chr3_1 exon 5592920 5593082 5592920 ID=Msa0345890-mRNA-1:exon:1670;Parent=Msa0345890-mRNA-1
chr3_1 exon 5593318 5593419 5593318 ID=Msa0345890-mRNA-1:exon:1669;Parent=Msa0345890-mRNA-1
chr3_1 exon 5593764 5593888 5593764 ID=Msa0345890-mRNA-1:exon:1668;Parent=Msa0345890-mRNA-1
chr3_1 exon 5593977 5594096 5593977 ID=Msa0345890-mRNA-1:exon:1667;Parent=Msa0345890-mRNA-1
chr3_1 exon 5594435 5594579 5594435 ID=Msa0345890-mRNA-1:exon:1666;Parent=Msa0345890-mRNA-1
chr3_1 exon 5594772 5594851 5594772 ID=Msa0345890-mRNA-1:exon:1665;Parent=Msa0345890-mRNA-1
chr3_1 exon 5595225 5595462 5595225 ID=Msa0345890-mRNA-1:exon:1664;Parent=Msa0345890-mRNA-1
chr3_1 exon 5597197 5597312 5597197 ID=Msa0345890-mRNA-1:exon:1663;Parent=Msa0345890-mRNA-1
chr3_1 five_prime_UTR 5597281 5597312 5597281 ID=Msa0345890-mRNA-1:five_prime_utr;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5597197 5597280 5597197 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5595225 5595462 5595225 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5594772 5594851 5594772 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5594435 5594579 5594435 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5593977 5594096 5593977 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5593764 5593888 5593764 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5593318 5593419 5593318 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5592920 5593082 5592920 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5592704 5592829 5592704 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5592532 5592615 5592532 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5592101 5592331 5592101 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5591970 5592070 5591970 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5591565 5591765 5591565 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5590928 5591020 5590928 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 CDS 5590759 5590815 5590759 ID=Msa0345890-mRNA-1:cds;Parent=Msa0345890-mRNA-1
chr3_1 three_prime_UTR 5590708 5590758 5590708 ID=Msa0345890-mRNA-1:three_prime_utr;Parent=Msa0345890-mRNA-1
Gene Sequence

>Msa0345890

ATGAGAAATACAAACAGAGCCAACGAACCTGCCAGCTTCTGGACTCAAGCAAACGCGCTTCTTAGGAAGAACTTAACCTTCCAGTGTGGATGCGTGGAGAATGAATGTGGGGTTCAATATTCGGATTTTGACCAAGTTGGCGCTTGTCCTATTACTAACCCTACGGAATGGCCTCCTTTACTGCAAACACCTGATCCACGATACCGCGCTGTTAGAACGGATTTTCTTCCGTTTTCTGATTTTCCAAACCCCTTATGCAGAACCAATGGCTCATGTCCCCTCACTATGCTCTTCACCGGTACTAATCAGTCTTTCGGAGAAGTCTTGTCAAGGAATATGATCCCAAGTACCATTGATATAGATAATTCAAATGTTATGGATAGTTTCGCGACAAATGTCTTGGGATCGTCATCAGAGACAGAGTACACCAATTTTCTGGAGCCTGCTTTCTTTTCAGAGCTTCCCATTTACTATCTACAAAGTCAGTGCGGAAAGAACTCTACATTGTCTGTTCCTGTTCAGATATCGACCGCTAGCGTGCAGCAAGAGTTAAGATGTGCTCAGGCTTTACGGTTATGGCGTAATAGTTCTTCTGAGGTAAACGATGCTCTATATAAAGGTTATAGAAAAGGTAACACAGAGAGACAGATCAATGAGATAACTGCAGGTTATGATTTTCTAGATTCAAATGAGAATATATTTAATGTCAGTATATGGTACAATTCAACCTATAAAAATGACACCGGCTTTGATAGAATTGCATTGGCGCGGATTCCTCGTTCTGTAAATTTGGTATCAAATTCCTACCTTCAGTTTCTGTTGGGCTCTGGTACCAAAATGTTGTTCGAGTTTGTGAAGGAAATGCCAAAACCTGAGACCCCATTAAAGTTTGACGTTGTCCTCACATCATTAGTTTATGAGAAGCAACAAAATTTAAGAATCATGATGAAAATGCATGGTCTCGGTGATGGGCCATATTGGATTATTTCTTACAGTTATTTTCTTGCCATATCAGTTATCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGATTAAAATTCTTCACAATGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAACTTACAAATTTCGCTGGCATTTTTATTGGCCTCGCTGTTTTCAAATGTTAAGACCGCTACAGTGGTTGCATATATAGGTGTTTTTGGCACTGGTCTATTAGCTGGTTTTCTTTTCCAATTTTTTATTCAAGATACATCGTTTCCAAAAGGGTGGATCATTGTTATGGAGTTATATCCCGGGTTTGCCTTATATCGTGGGTTATATGAATTTTCACAATCGTCTTTTACTGGAGATACTATGGGGACTCATGGTATGCGGTGGGGAGATCTCAATGATAGCACAAATGGCATGAAAGAGGTCTTGATTATCATGTTCGTGGAGTGGCTATTAGTTTTGTTCTTCGCGTATTACATCGATCGAGTTTTATCAACAGGAAGATTTCAGAAAAAACTTAGTTCATCTTTTCGGAAGCCTAGTCTTCAAAGGCAAGGATCTAAAGTTTTTGTTATGACCGAGAAAGCAGATATTCACCAAGAGACGGAGAAGGTGGAGCAGCTGCTACTTGAACCTACTACGAATCATGCAATCGTTTGCGACAAACTGAGCAAAGTTTATCCAGGGAGGGATGGTAACCCGGCGAAATTTGCGGTGAGAGAGTTATCCCTTGCTTTGCCTGAAGGAGAATGCTTTGGAATGCTCGGTCCCAATGGTGCTGGAAAGACTTCTTTTATCAACATGATGATAGGTCTTACAAAGCCAACCTCAGGTACAGCATTTGTTCAAGGTCTTGACATAAGAACTGATATGAATGGAATATATACAAGCATGGGTCTTGCTGTGGGAAATCTTGACAGGAAGAGAGCACCTACTCTTTTATGGCAGACTTAA

Protein sequence

>Msa0345890

MRNTNRANEPASFWTQANALLRKNLTFQCGCVENECGVQYSDFDQVGACPITNPTEWPPLLQTPDPRYRAVRTDFLPFSDFPNPLCRTNGSCPLTMLFTGTNQSFGEVLSRNMIPSTIDIDNSNVMDSFATNVLGSSSETEYTNFLEPAFFSELPIYYLQSQCGKNSTLSVPVQISTASVQQELRCAQALRLWRNSSSEVNDALYKGYRKGNTERQINEITAGYDFLDSNENIFNVSIWYNSTYKNDTGFDRIALARIPRSVNLVSNSYLQFLLGSGTKMLFEFVKEMPKPETPLKFDVVLTSLVYEKQQNLRIMMKMHGLGDGPYWIISYSYFLAISVIYMLCFVIFGSVIGLKFFTMNDYSIQFVFYFIYINLQISLAFLLASLFSNVKTATVVAYIGVFGTGLLAGFLFQFFIQDTSFPKGWIIVMELYPGFALYRGLYEFSQSSFTGDTMGTHGMRWGDLNDSTNGMKEVLIIMFVEWLLVLFFAYYIDRVLSTGRFQKKLSSSFRKPSLQRQGSKVFVMTEKADIHQETEKVEQLLLEPTTNHAIVCDKLSKVYPGRDGNPAKFAVRELSLALPEGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTDMNGIYTSMGLAVGNLDRKRAPTLLWQT*