Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951700 | XP_013452171.1 | 99.035 | 311 | 1 | 1 | 1 | 311 | 1 | 309 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951700 | sp|Q94AH9|FBRL2_ARATH | 90.574 | 244 | 23 | 0 | 67 | 310 | 74 | 317 | 7.39e-166 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044890 | Msa0951700 | 0.807297 | 5.415997e-50 | -8.615850e-47 |
| Msa0183090 | Msa0951700 | 0.800347 | 1.503962e-48 | -8.615850e-47 |
| Msa0208190 | Msa0951700 | 0.807648 | 4.561190e-50 | -8.615850e-47 |
| Msa0208290 | Msa0951700 | 0.810048 | 1.398721e-50 | -8.615850e-47 |
| Msa0208320 | Msa0951700 | 0.809656 | 1.699003e-50 | -8.615850e-47 |
| Msa0951700 | Msa1147670 | 0.818404 | 1.995280e-52 | -8.615850e-47 |
| Msa0951700 | Msa1397660 | 0.820317 | 7.311397e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951700 | MtrunA17_Chr6g0468501 | 88.746 | 311 | 1 | 2 | 1 | 311 | 1 | 277 | 0.0 | 535 |
| Msa0951700 | MtrunA17_Chr1g0211621 | 97.143 | 245 | 7 | 0 | 67 | 311 | 69 | 313 | 1.48e-177 | 493 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951700 | AT4G25630.1 | 90.574 | 244 | 23 | 0 | 67 | 310 | 74 | 317 | 7.52e-167 | 466 |
| Msa0951700 | AT5G52470.1 | 90.909 | 242 | 22 | 0 | 67 | 308 | 63 | 304 | 6.06e-166 | 464 |
| Msa0951700 | AT5G52490.1 | 62.745 | 306 | 100 | 1 | 1 | 306 | 1 | 292 | 4.31e-122 | 352 |
| Msa0951700 | AT5G52470.2 | 93.902 | 164 | 10 | 0 | 67 | 230 | 63 | 226 | 5.83e-111 | 323 |
Find 118 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAATTTATAGCTGAAATT+AGG | 0.152142 | 6_3:-43542715 | None:intergenic |
| TGAAAATACCTTCATGTCTA+TGG | 0.173169 | 6_3:-43543967 | None:intergenic |
| GTGCTGCAGGCAAGAATATT+AGG | 0.212569 | 6_3:+43545759 | Msa0951700:intron |
| CAAAAGTTGAGTATAGAATT+TGG | 0.258647 | 6_3:+43544531 | Msa0951700:CDS |
| CGGATGTGCTACTATAATTT+AGG | 0.269465 | 6_3:+43547321 | Msa0951700:three_prime_UTR |
| CTGTACCTAGGAGCTGCTTC+AGG | 0.286302 | 6_3:+43544724 | Msa0951700:CDS |
| CGTGGTGGAGGTAGAGGTTT+TGG | 0.294526 | 6_3:+43543851 | Msa0951700:CDS |
| TGAATTTATAGCTGAAATTA+GGG | 0.303441 | 6_3:-43542714 | None:intergenic |
| GGAGGAAGGGGTGGTGGTCG+TGG | 0.305671 | 6_3:+43543896 | Msa0951700:CDS |
| GGTGGTGGAGGTAGAGGTTT+TGG | 0.314672 | 6_3:+43543800 | Msa0951700:CDS |
| ATGTCTAGCATCCTCAATAA+TGG | 0.315021 | 6_3:-43544971 | None:intergenic |
| CAGTGAACCGTGAGAAGAAT+AGG | 0.320198 | 6_3:-43542754 | None:intergenic |
| AGGGGTGGTGGTCGTGGTGG+CGG | 0.320937 | 6_3:+43543902 | Msa0951700:CDS |
| GGTGGTCGTGGTGGCGGAAG+AGG | 0.325648 | 6_3:+43543908 | Msa0951700:CDS |
| CAGAATGCCTAAGAAGAAAA+AGG | 0.337756 | 6_3:+43547107 | Msa0951700:CDS |
| GGCAGAGGAGCCCGTGGAGG+AGG | 0.348283 | 6_3:+43543878 | Msa0951700:CDS |
| AGAGGAGGAAGAGGTGGTGG+TGG | 0.355462 | 6_3:+43543785 | Msa0951700:CDS |
| GGCTTCTAAACAAACCTTGA+TGG | 0.356702 | 6_3:-43545829 | None:intergenic |
| TGTGCAGGTCGTGGTGGTTT+CGG | 0.357824 | 6_3:+43543746 | Msa0951700:intron |
| GTTACTAAGAATCTTGTTCC+TGG | 0.362378 | 6_3:+43544016 | Msa0951700:CDS |
| AGAGGTGGTGGTGGAGGTAG+AGG | 0.363548 | 6_3:+43543794 | Msa0951700:CDS |
| GGAGGAAGAGGTGGTGGTGG+AGG | 0.370967 | 6_3:+43543788 | Msa0951700:CDS |
| AGGGACCATGCTTGTGTTGT+TGG | 0.394797 | 6_3:+43547078 | Msa0951700:CDS |
| TGATGTTGCTCAGCCTGATC+AGG | 0.400610 | 6_3:+43545041 | Msa0951700:CDS |
| GGAGGTGACAGAGGAGGAAG+AGG | 0.403951 | 6_3:+43543776 | Msa0951700:CDS |
| TTAAACAAAATTGAAATCCT+AGG | 0.412557 | 6_3:-43547214 | None:intergenic |
| TCAAGAGTGACTTGCTCAAA+TGG | 0.415865 | 6_3:-43547045 | None:intergenic |
| GACAGAGGAGGAAGAGGTGG+TGG | 0.417085 | 6_3:+43543782 | Msa0951700:CDS |
| GGAGCCCGTGGAGGAGGAAG+GGG | 0.419111 | 6_3:+43543884 | Msa0951700:CDS |
| TGTCTAGCATCCTCAATAAT+GGG | 0.423666 | 6_3:-43544970 | None:intergenic |
| AAAATTGACCACACCTGATC+AGG | 0.426698 | 6_3:-43545054 | None:intergenic |
| CTGCTGAACACTGCCTCGGC+AGG | 0.426907 | 6_3:-43546988 | None:intergenic |
| TGAAAAGAGAGTTTCTGTTC+AGG | 0.427552 | 6_3:+43544054 | Msa0951700:CDS |
| GAAAATACCTTCATGTCTAT+GGG | 0.430732 | 6_3:-43543966 | None:intergenic |
| GACTGTCGAATCAATGCAAT+TGG | 0.435092 | 6_3:-43546965 | None:intergenic |
| GAGGAGCCCGTGGAGGAGGA+AGG | 0.439354 | 6_3:+43543882 | Msa0951700:CDS |
| AGGAGCCCGTGGAGGAGGAA+GGG | 0.439978 | 6_3:+43543883 | Msa0951700:CDS |
| CGTGGAGGAGGAAGGGGTGG+TGG | 0.443047 | 6_3:+43543890 | Msa0951700:CDS |
| GGAAGGGGTGGTGGTCGTGG+TGG | 0.444423 | 6_3:+43543899 | Msa0951700:CDS |
| TGCTTTCTCAAAAGCAGGTT+AGG | 0.447464 | 6_3:-43547141 | None:intergenic |
| GCCCGTGGAGGAGGAAGGGG+TGG | 0.448070 | 6_3:+43543887 | Msa0951700:CDS |
| TTGGTGGTGTTGACAACATA+TGG | 0.450406 | 6_3:+43544588 | Msa0951700:CDS |
| AAGCCTCGTGGTGGAGGTAG+AGG | 0.453535 | 6_3:+43543845 | Msa0951700:CDS |
| TCAAGAGATTGCAAAGAGAT+TGG | 0.458282 | 6_3:-43542802 | None:intergenic |
| GGTCGTGGTGGCGGAAGAGG+TGG | 0.465681 | 6_3:+43543911 | Msa0951700:CDS |
| ATTGGTGTTAGCGGCGAGAA+AGG | 0.467302 | 6_3:-43542784 | None:intergenic |
| AAAAGAGAGACACGGGAAAC+GGG | 0.469779 | 6_3:-43542653 | None:intergenic |
| CACCACCCCTTCCTCCTCCA+CGG | 0.471521 | 6_3:-43543889 | None:intergenic |
| GCCAACTAACATTCTATACT+TGG | 0.476435 | 6_3:-43544998 | None:intergenic |
| ACTAACATTCTATACTTGGC+TGG | 0.476845 | 6_3:-43544994 | None:intergenic |
| AAGTTGGCAGCTGCTGTCCT+TGG | 0.477584 | 6_3:+43544569 | Msa0951700:CDS |
| TGCTGCAGGCAAGAATATTA+GGG | 0.479758 | 6_3:+43545760 | Msa0951700:intron |
| GACCATGCTTGTGTTGTTGG+TGG | 0.479970 | 6_3:+43547081 | Msa0951700:CDS |
| TTACATGCTTTCTCAAAAGC+AGG | 0.480575 | 6_3:-43547146 | None:intergenic |
| TAATGTCATTCCCATTATTG+AGG | 0.481269 | 6_3:+43544960 | Msa0951700:CDS |
| CTGCCAACTTAGAGCGGAAA+GGG | 0.481291 | 6_3:-43544556 | None:intergenic |
| CGTGGTGGTTTCGGAGGAAG+AGG | 0.483678 | 6_3:+43543755 | Msa0951700:CDS |
| GGCGGAAGAGGTGGAATGAA+AGG | 0.484841 | 6_3:+43543920 | Msa0951700:CDS |
| GGTGACAGAGGAGGAAGAGG+TGG | 0.487071 | 6_3:+43543779 | Msa0951700:CDS |
| CAAGCATGGTCCCTCTCAAA+TGG | 0.492656 | 6_3:-43547069 | None:intergenic |
| ACCACCCCTTCCTCCTCCAC+GGG | 0.493032 | 6_3:-43543888 | None:intergenic |
| TCTCACGTGTCTGATATTGT+TGG | 0.496026 | 6_3:+43544757 | Msa0951700:CDS |
| CTGAAGCAGCTCCTAGGTAC+AGG | 0.496571 | 6_3:-43544723 | None:intergenic |
| AAGAATAGGGTTTAAGCAGA+AGG | 0.498088 | 6_3:-43542740 | None:intergenic |
| CCACCGAAGTGGACGTGACT+TGG | 0.501707 | 6_3:+43544915 | Msa0951700:CDS |
| CTTAAACCCTATTCTTCTCA+CGG | 0.508621 | 6_3:+43542747 | Msa0951700:five_prime_UTR |
| TGTACCTAGGAGCTGCTTCA+GGG | 0.509892 | 6_3:+43544725 | Msa0951700:CDS |
| TTGTTTAATGATAATTTATG+TGG | 0.511156 | 6_3:+43547283 | Msa0951700:intron |
| TTGGCAGCTGCTGTCCTTGG+TGG | 0.517332 | 6_3:+43544572 | Msa0951700:CDS |
| AGTGAACCGTGAGAAGAATA+GGG | 0.520484 | 6_3:-43542753 | None:intergenic |
| GAAAAGAGAGACACGGGAAA+CGG | 0.521559 | 6_3:-43542654 | None:intergenic |
| TTGTCCCTGAAGCAGCTCCT+AGG | 0.523189 | 6_3:-43544729 | None:intergenic |
| CAGTGAGGTGAACAAGTTGA+AGG | 0.524010 | 6_3:+43547008 | Msa0951700:CDS |
| GCTTCATATTATCTTAAAGC+CGG | 0.526027 | 6_3:+43545789 | Msa0951700:CDS |
| TACATTGTGCAGAGTGAGGA+TGG | 0.531738 | 6_3:+43544506 | Msa0951700:intron |
| TGGAATGAAAGGAGGAAGCA+AGG | 0.532322 | 6_3:+43543931 | Msa0951700:CDS |
| GCCAAGTATAGAATGTTAGT+TGG | 0.534658 | 6_3:+43544997 | Msa0951700:CDS |
| GAACCCTTTCCGCTCTAAGT+TGG | 0.535211 | 6_3:+43544553 | Msa0951700:CDS |
| GGAGGAGGCAGAGGAGCCCG+TGG | 0.537150 | 6_3:+43543872 | Msa0951700:CDS |
| GTATAGAATGTTAGTTGGCA+TGG | 0.538099 | 6_3:+43545002 | Msa0951700:CDS |
| TGCAAAGAGATTGGTGTTAG+CGG | 0.542124 | 6_3:-43542793 | None:intergenic |
| GGATATAACAAAATGACCTC+CGG | 0.549856 | 6_3:-43545808 | None:intergenic |
| CCAAGTCACGTCCACTTCGG+TGG | 0.562603 | 6_3:-43544915 | None:intergenic |
| CACTCTTGAACCATTTGAGA+GGG | 0.567110 | 6_3:+43547059 | Msa0951700:CDS |
| GGAAGAGGTGGAATGAAAGG+AGG | 0.568584 | 6_3:+43543923 | Msa0951700:CDS |
| TGCTGAACACTGCCTCGGCA+GGG | 0.573303 | 6_3:-43546987 | None:intergenic |
| TCATTGTAAACAGCTTCACC+AGG | 0.577145 | 6_3:-43544034 | None:intergenic |
| GGAAGAGGAGGTGACAGAGG+AGG | 0.588440 | 6_3:+43543770 | Msa0951700:CDS |
| GGAGGCAGAGGAGCCCGTGG+AGG | 0.591678 | 6_3:+43543875 | Msa0951700:CDS |
| GTTGAGCCCCATAGACATGA+AGG | 0.592127 | 6_3:+43543959 | Msa0951700:CDS |
| CGGGAGTGAAAAGAGAGACA+CGG | 0.594215 | 6_3:-43542661 | None:intergenic |
| TCTTTGCAATCTCTTGAACA+TGG | 0.598260 | 6_3:+43542808 | Msa0951700:exon |
| GTAGAATTCTCCCACCGAAG+TGG | 0.603173 | 6_3:+43544904 | Msa0951700:CDS |
| TGTGGTTTATAATTTGCCAA+CGG | 0.603598 | 6_3:+43547301 | Msa0951700:three_prime_UTR |
| TGGACGTGACTTGGTTAACA+TGG | 0.606551 | 6_3:+43544924 | Msa0951700:CDS |
| TCACTCTTGAACCATTTGAG+AGG | 0.611474 | 6_3:+43547058 | Msa0951700:CDS |
| GCAGGTCGTGGTGGTTTCGG+AGG | 0.611968 | 6_3:+43543749 | Msa0951700:intron |
| TCATATTATCTTAAAGCCGG+AGG | 0.612029 | 6_3:+43545792 | Msa0951700:CDS |
| CAAGTCACGTCCACTTCGGT+GGG | 0.612560 | 6_3:-43544914 | None:intergenic |
| GGAGGAAGAGGAGGTGACAG+AGG | 0.613586 | 6_3:+43543767 | Msa0951700:CDS |
| GGTGCTAAAGTCCTGTACCT+AGG | 0.620540 | 6_3:+43544712 | Msa0951700:CDS |
| AGGTACAGGACTTTAGCACC+AGG | 0.620955 | 6_3:-43544709 | None:intergenic |
| GCTGCCAACTTAGAGCGGAA+AGG | 0.628337 | 6_3:-43544557 | None:intergenic |
| AATTATAGTAGCACATCCGT+TGG | 0.628427 | 6_3:-43547317 | None:intergenic |
| CAGCAGCTGCCAACTTAGAG+CGG | 0.631537 | 6_3:-43544562 | None:intergenic |
| GGTGGTTTCGGAGGAAGAGG+AGG | 0.633497 | 6_3:+43543758 | Msa0951700:CDS |
| GGGAGTGAAAAGAGAGACAC+GGG | 0.643072 | 6_3:-43542660 | None:intergenic |
| AAAATACCTTCATGTCTATG+GGG | 0.648469 | 6_3:-43543965 | None:intergenic |
| TAACCAAGTCACGTCCACTT+CGG | 0.649366 | 6_3:-43544918 | None:intergenic |
| TTGAACATGGCTCCTCCTCG+AGG | 0.649620 | 6_3:+43542821 | Msa0951700:exon |
| CTCACTGCTGAACACTGCCT+CGG | 0.658383 | 6_3:-43546992 | None:intergenic |
| TGAATATGTGCAGGTCGTGG+TGG | 0.658724 | 6_3:+43543740 | Msa0951700:intron |
| ATCCACCAACAACACAAGCA+TGG | 0.661146 | 6_3:-43547083 | None:intergenic |
| TGATTCGACAGTCCCTGCCG+AGG | 0.674585 | 6_3:+43546975 | Msa0951700:CDS |
| CGAGGCAGTGTTCAGCAGTG+AGG | 0.681583 | 6_3:+43546993 | Msa0951700:CDS |
| TGAGGTGAACAAGTTGAAGG+CGG | 0.693045 | 6_3:+43547011 | Msa0951700:CDS |
| ATATGTTGTCAACACCACCA+AGG | 0.747780 | 6_3:-43544586 | None:intergenic |
| AAACCTCTACCTCCACCACG+AGG | 0.765824 | 6_3:-43543848 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTATCATATTTGATA+TGG | + | chr6_3:43542930-43542949 | Msa0951700:intron | 10.0% |
| !! | TAATTTATCATATTTGATAT+GGG | + | chr6_3:43542931-43542950 | Msa0951700:intron | 10.0% |
| !!! | TTATTTTGTCATAATTAATA+TGG | + | chr6_3:43543228-43543247 | Msa0951700:intron | 10.0% |
| !!! | AGTTAATTGATTAAATTTTT+TGG | + | chr6_3:43543266-43543285 | Msa0951700:intron | 10.0% |
| !!! | TTTAATCAATTTATTTTGTA+TGG | + | chr6_3:43546938-43546957 | Msa0951700:intron | 10.0% |
| !! | AATTAAATTGAAACAGAAAA+AGG | - | chr6_3:43542866-43542885 | None:intergenic | 15.0% |
| !! | TTATGACAAAATAAACAAAA+GGG | - | chr6_3:43543222-43543241 | None:intergenic | 15.0% |
| !! | ATTATGACAAAATAAACAAA+AGG | - | chr6_3:43543223-43543242 | None:intergenic | 15.0% |
| !!! | TGATTAAATTTTTTGGATTT+TGG | + | chr6_3:43543273-43543292 | Msa0951700:intron | 15.0% |
| !! | TTTCATTTATTGAAATCAAA+TGG | + | chr6_3:43543321-43543340 | Msa0951700:intron | 15.0% |
| !! | TTCATTTATTGAAATCAAAT+GGG | + | chr6_3:43543322-43543341 | Msa0951700:intron | 15.0% |
| !! | TTTCATTTGTTTAAATCAAA+TGG | + | chr6_3:43543435-43543454 | Msa0951700:intron | 15.0% |
| !! | TTCATTTGTTTAAATCAAAT+GGG | + | chr6_3:43543436-43543455 | Msa0951700:intron | 15.0% |
| !!! | CTTTTTAAATTTTAACTGAA+TGG | + | chr6_3:43544092-43544111 | Msa0951700:intron | 15.0% |
| !! | TTCAAAATGTCAAATAAAAA+TGG | - | chr6_3:43545508-43545527 | None:intergenic | 15.0% |
| !! | TAAATAATGAAAAATCTGAA+AGG | - | chr6_3:43545541-43545560 | None:intergenic | 15.0% |
| !! | AAGTCATATCAAATTAAATT+TGG | - | chr6_3:43545853-43545872 | None:intergenic | 15.0% |
| !! | AGTAAAATTATAAAGAAAAG+AGG | - | chr6_3:43546721-43546740 | None:intergenic | 15.0% |
| !!! | TTTTTAAGTTTGTTTTGTAT+TGG | + | chr6_3:43546839-43546858 | Msa0951700:intron | 15.0% |
| !! | TTGTTTAATGATAATTTATG+TGG | + | chr6_3:43547283-43547302 | Msa0951700:intron | 15.0% |
| !!! | TTTTATTTTTTTCTATGCCT+CGG | - | chr6_3:43542684-43542703 | None:intergenic | 20.0% |
| !! | TGAATTTATAGCTGAAATTA+GGG | - | chr6_3:43542717-43542736 | None:intergenic | 20.0% |
| !! | ATGAATTTATAGCTGAAATT+AGG | - | chr6_3:43542718-43542737 | None:intergenic | 20.0% |
| !! | ATATGATAAATTAAACACGA+GGG | - | chr6_3:43542924-43542943 | None:intergenic | 20.0% |
| !! | AATATGATAAATTAAACACG+AGG | - | chr6_3:43542925-43542944 | None:intergenic | 20.0% |
| !!! | TTTAGCTTTATTTGTTGAAA+TGG | + | chr6_3:43543027-43543046 | Msa0951700:intron | 20.0% |
| !!! | TTAGCTTTATTTGTTGAAAT+GGG | + | chr6_3:43543028-43543047 | Msa0951700:intron | 20.0% |
| !!! | AGATATATAGATTTTAAGCT+AGG | - | chr6_3:43543570-43543589 | None:intergenic | 20.0% |
| !!! | TTCTATTTTATAAAGAAACC+TGG | + | chr6_3:43544691-43544710 | Msa0951700:intron | 20.0% |
| !! | ATATAACATATATAACGTTC+AGG | - | chr6_3:43545121-43545140 | None:intergenic | 20.0% |
| !! | ATGGAAAACAAAAAAAAAAG+GGG | - | chr6_3:43545308-43545327 | None:intergenic | 20.0% |
| !! | GATGGAAAACAAAAAAAAAA+GGG | - | chr6_3:43545309-43545328 | None:intergenic | 20.0% |
| !! | TGATGGAAAACAAAAAAAAA+AGG | - | chr6_3:43545310-43545329 | None:intergenic | 20.0% |
| !!! | TTATACTTTGAAATGAATGA+TGG | - | chr6_3:43545327-43545346 | None:intergenic | 20.0% |
| !! | CATTCATTTCAAAGTATAAA+AGG | + | chr6_3:43545328-43545347 | Msa0951700:intron | 20.0% |
| !!! | TTATTTGACATTTTGAAGTT+TGG | + | chr6_3:43545511-43545530 | Msa0951700:intron | 20.0% |
| !!! | ATTTTTTCCTTTCAGTTTTT+AGG | + | chr6_3:43545932-43545951 | Msa0951700:intron | 20.0% |
| !! | TTAAATTCCTAAAAACTGAA+AGG | - | chr6_3:43545942-43545961 | None:intergenic | 20.0% |
| !! | AAATTGATATATAGACTATG+TGG | - | chr6_3:43546306-43546325 | None:intergenic | 20.0% |
| !!! | TGTGATAATAAGAAGTATTT+GGG | - | chr6_3:43546355-43546374 | None:intergenic | 20.0% |
| !!! | TTGTGATAATAAGAAGTATT+TGG | - | chr6_3:43546356-43546375 | None:intergenic | 20.0% |
| !! | CCTTGATAGATATATAAAAA+TGG | - | chr6_3:43546580-43546599 | None:intergenic | 20.0% |
| !!! | CCATTTTTATATATCTATCA+AGG | + | chr6_3:43546577-43546596 | Msa0951700:intron | 20.0% |
| !!! | TTATGACTTTTATCACAATA+AGG | + | chr6_3:43546610-43546629 | Msa0951700:intron | 20.0% |
| !!! | GTATTTAGGTTATATATTTC+CGG | + | chr6_3:43546640-43546659 | Msa0951700:intron | 20.0% |
| !!! | TATTTAGGTTATATATTTCC+GGG | + | chr6_3:43546641-43546660 | Msa0951700:intron | 20.0% |
| !! | CAAAACAAACTTAAAAAACA+AGG | - | chr6_3:43546836-43546855 | None:intergenic | 20.0% |
| !!! | GTTTTCATTTTAGTTTTCAT+TGG | + | chr6_3:43546872-43546891 | Msa0951700:intron | 20.0% |
| !!! | ATCAATTTATTTTGTATGGT+AGG | + | chr6_3:43546942-43546961 | Msa0951700:intron | 20.0% |
| !! | TTAAACAAAATTGAAATCCT+AGG | - | chr6_3:43547217-43547236 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTTCTATGCCTC+GGG | - | chr6_3:43542683-43542702 | None:intergenic | 25.0% |
| ! | TATCATATTTGATATGGGTT+TGG | + | chr6_3:43542936-43542955 | Msa0951700:intron | 25.0% |
| ! | AGTTGATTGAATAGAAAGTT+TGG | + | chr6_3:43542968-43542987 | Msa0951700:intron | 25.0% |
| !!! | TTCATTGATGATGTTTTTGT+TGG | + | chr6_3:43543297-43543316 | Msa0951700:intron | 25.0% |
| !!! | TCATTGATGATGTTTTTGTT+GGG | + | chr6_3:43543298-43543317 | Msa0951700:intron | 25.0% |
| !! | TCAAATGGGTTTATAGTAAT+AGG | + | chr6_3:43543336-43543355 | Msa0951700:intron | 25.0% |
| !! | ATTTTAAGCTAGGCTTTTAT+CGG | - | chr6_3:43543560-43543579 | None:intergenic | 25.0% |
| ! | ATTATTTGCATGGTTTGAAA+AGG | - | chr6_3:43544341-43544360 | None:intergenic | 25.0% |
| ! | GTAATGACACAATAAACTAA+CGG | - | chr6_3:43544471-43544490 | None:intergenic | 25.0% |
| ! | CAAAAGTTGAGTATAGAATT+TGG | + | chr6_3:43544531-43544550 | Msa0951700:CDS | 25.0% |
| !!! | CACTGATTTATCTTAAATGA+TGG | + | chr6_3:43545079-43545098 | Msa0951700:intron | 25.0% |
| !! | GATTGATTGATTGTTTTCTA+TGG | + | chr6_3:43545566-43545585 | Msa0951700:intron | 25.0% |
| !!! | TCATTTTGTTATATCCATCA+AGG | + | chr6_3:43545815-43545834 | Msa0951700:CDS | 25.0% |
| ! | TTGTTTCGTTATCTGTATAT+TGG | + | chr6_3:43545881-43545900 | Msa0951700:intron | 25.0% |
| ! | TGTTTCGTTATCTGTATATT+GGG | + | chr6_3:43545882-43545901 | Msa0951700:intron | 25.0% |
| ! | ACTTCTTATTATCACAAAGT+TGG | + | chr6_3:43546359-43546378 | Msa0951700:intron | 25.0% |
| ! | AATAAGGCAAAGTTGTATTT+AGG | + | chr6_3:43546626-43546645 | Msa0951700:intron | 25.0% |
| !!! | AAAAGAGGATATTTAGTTTG+TGG | - | chr6_3:43546706-43546725 | None:intergenic | 25.0% |
| ! | AACAAACTTAAAAAACAAGG+AGG | - | chr6_3:43546833-43546852 | None:intergenic | 25.0% |
| !! | AGTTTTCATTGGATAGTAAA+TGG | + | chr6_3:43546883-43546902 | Msa0951700:intron | 25.0% |
| !!! | TTTTAGATTATTTCTCAGCT+TGG | - | chr6_3:43546913-43546932 | None:intergenic | 25.0% |
| ! | ATTGTCATCAAAAATATCCT+AGG | - | chr6_3:43547190-43547209 | None:intergenic | 25.0% |
| ! | TGAAATGGGTTTAGAGTAAT+AGG | + | chr6_3:43543042-43543061 | Msa0951700:intron | 30.0% |
| GTTTATAGTAATAGGCTTGA+AGG | + | chr6_3:43543344-43543363 | Msa0951700:intron | 30.0% | |
| ! | TCAAATGGGTTTATAGTTAG+TGG | + | chr6_3:43543450-43543469 | Msa0951700:intron | 30.0% |
| ! | CAAATGGGTTTATAGTTAGT+GGG | + | chr6_3:43543451-43543470 | Msa0951700:intron | 30.0% |
| ! | GCTCAAAGCAATAATTTGTA+GGG | + | chr6_3:43543473-43543492 | Msa0951700:intron | 30.0% |
| !! | AGCTTGATTTGTGTTGATAA+TGG | + | chr6_3:43543711-43543730 | Msa0951700:intron | 30.0% |
| AAAATACCTTCATGTCTATG+GGG | - | chr6_3:43543968-43543987 | None:intergenic | 30.0% | |
| GAAAATACCTTCATGTCTAT+GGG | - | chr6_3:43543969-43543988 | None:intergenic | 30.0% | |
| TGAAAATACCTTCATGTCTA+TGG | - | chr6_3:43543970-43543989 | None:intergenic | 30.0% | |
| !!! | TGAAGGTATTTTCATTGCTA+AGG | + | chr6_3:43543976-43543995 | Msa0951700:CDS | 30.0% |
| !!! | GAAGGTATTTTCATTGCTAA+GGG | + | chr6_3:43543977-43543996 | Msa0951700:CDS | 30.0% |
| AAATTTGAATGAACCCTTAC+TGG | - | chr6_3:43544784-43544803 | None:intergenic | 30.0% | |
| TAATGTCATTCCCATTATTG+AGG | + | chr6_3:43544960-43544979 | Msa0951700:CDS | 30.0% | |
| ! | ATGATGGTACCAGAATATTT+TGG | + | chr6_3:43545095-43545114 | Msa0951700:intron | 30.0% |
| TAAGAGGACAGTTATATACT+TGG | - | chr6_3:43545170-43545189 | None:intergenic | 30.0% | |
| TGCAAAAACAAGTAGATAAG+AGG | - | chr6_3:43545186-43545205 | None:intergenic | 30.0% | |
| !!! | CTTATCTACTTGTTTTTGCA+TGG | + | chr6_3:43545186-43545205 | Msa0951700:intron | 30.0% |
| AAACTGATACTTACACAACA+TGG | - | chr6_3:43545719-43545738 | None:intergenic | 30.0% | |
| GCTTCATATTATCTTAAAGC+CGG | + | chr6_3:43545789-43545808 | Msa0951700:CDS | 30.0% | |
| AGGAAAAAATCAGAACACTA+GGG | - | chr6_3:43545922-43545941 | None:intergenic | 30.0% | |
| AAGGAAAAAATCAGAACACT+AGG | - | chr6_3:43545923-43545942 | None:intergenic | 30.0% | |
| ! | TTTCCATGTATCAAGTGTTT+TGG | + | chr6_3:43545987-43546006 | Msa0951700:intron | 30.0% |
| TAACCAAAACACTTGATACA+TGG | - | chr6_3:43545993-43546012 | None:intergenic | 30.0% | |
| TCTTATTATCACAAAGTTGG+AGG | + | chr6_3:43546362-43546381 | Msa0951700:intron | 30.0% | |
| CTTATTATCACAAAGTTGGA+GGG | + | chr6_3:43546363-43546382 | Msa0951700:intron | 30.0% | |
| GTGGAAAACAAATTTATGCA+TGG | - | chr6_3:43546431-43546450 | None:intergenic | 30.0% | |
| ! | GATTAGACGTATTGATCTAA+TGG | - | chr6_3:43546453-43546472 | None:intergenic | 30.0% |
| TCACATCTCATTTGATCAAA+TGG | + | chr6_3:43546476-43546495 | Msa0951700:intron | 30.0% | |
| TTACTTGTGCATTATAGACT+TGG | + | chr6_3:43546554-43546573 | Msa0951700:intron | 30.0% | |
| AAACTATCAATTTCACTTGG+TGG | - | chr6_3:43546780-43546799 | None:intergenic | 30.0% | |
| GAGAAACTATCAATTTCACT+TGG | - | chr6_3:43546783-43546802 | None:intergenic | 30.0% | |
| AAACAAGGAGGTTAATTTAC+AGG | - | chr6_3:43546821-43546840 | None:intergenic | 30.0% | |
| TGTGATATGTGTTAAGAGTT+TGG | + | chr6_3:43547260-43547279 | Msa0951700:intron | 30.0% | |
| ! | TGTGGTTTATAATTTGCCAA+CGG | + | chr6_3:43547301-43547320 | Msa0951700:three_prime_UTR | 30.0% |
| AAGAATAGGGTTTAAGCAGA+AGG | - | chr6_3:43542743-43542762 | None:intergenic | 35.0% | |
| CTTAAACCCTATTCTTCTCA+CGG | + | chr6_3:43542747-43542766 | Msa0951700:five_prime_UTR | 35.0% | |
| TCAAGAGATTGCAAAGAGAT+TGG | - | chr6_3:43542805-43542824 | None:intergenic | 35.0% | |
| TCTTTGCAATCTCTTGAACA+TGG | + | chr6_3:43542808-43542827 | Msa0951700:exon | 35.0% | |
| !!! | TAGAGTTTTTTGATACCTCG+AGG | - | chr6_3:43542839-43542858 | None:intergenic | 35.0% |
| ! | GTTTAGAGTAATAGGCTTGA+AGG | + | chr6_3:43543050-43543069 | Msa0951700:intron | 35.0% |
| AATGAACTGTGTAACGTTTG+AGG | + | chr6_3:43543101-43543120 | Msa0951700:intron | 35.0% | |
| ! | GGCTCAAAGCAATAATTTGT+AGG | + | chr6_3:43543472-43543491 | Msa0951700:intron | 35.0% |
| ! | AGCAATAATTTGTAGGGATC+CGG | + | chr6_3:43543479-43543498 | Msa0951700:intron | 35.0% |
| ! | ATCCGAATCCAATTTTTGCT+GGG | + | chr6_3:43543625-43543644 | Msa0951700:intron | 35.0% |
| CATAAAAGCCCAGCAAAAAT+TGG | - | chr6_3:43543636-43543655 | None:intergenic | 35.0% | |
| ! | TGGAGTTTTTGAATATGTGC+AGG | + | chr6_3:43543731-43543750 | Msa0951700:intron | 35.0% |
| GTTACTAAGAATCTTGTTCC+TGG | + | chr6_3:43544016-43544035 | Msa0951700:CDS | 35.0% | |
| TGAAAAGAGAGTTTCTGTTC+AGG | + | chr6_3:43544054-43544073 | Msa0951700:CDS | 35.0% | |
| AGAGCACACAATTATTTGCA+TGG | - | chr6_3:43544351-43544370 | None:intergenic | 35.0% | |
| !!! | GACTTGCAGACTTTTTTTGA+CGG | - | chr6_3:43544402-43544421 | None:intergenic | 35.0% |
| ! | AAAGTCTGCAAGTCTGTTTT+TGG | + | chr6_3:43544408-43544427 | Msa0951700:intron | 35.0% |
| ! | TTTTGGACGTGTACAAACTT+TGG | + | chr6_3:43544425-43544444 | Msa0951700:intron | 35.0% |
| ! | TTTTTACATTGTGCAGAGTG+AGG | + | chr6_3:43544502-43544521 | Msa0951700:intron | 35.0% |
| TGATATTGTTGGTCCAGTAA+GGG | + | chr6_3:43544768-43544787 | Msa0951700:intron | 35.0% | |
| CATATTCTGTGTATGTAGAC+TGG | + | chr6_3:43544868-43544887 | Msa0951700:intron | 35.0% | |
| TGTCTAGCATCCTCAATAAT+GGG | - | chr6_3:43544973-43544992 | None:intergenic | 35.0% | |
| ATGTCTAGCATCCTCAATAA+TGG | - | chr6_3:43544974-43544993 | None:intergenic | 35.0% | |
| ACTAACATTCTATACTTGGC+TGG | - | chr6_3:43544997-43545016 | None:intergenic | 35.0% | |
| GCCAAGTATAGAATGTTAGT+TGG | + | chr6_3:43544997-43545016 | Msa0951700:CDS | 35.0% | |
| GCCAACTAACATTCTATACT+TGG | - | chr6_3:43545001-43545020 | None:intergenic | 35.0% | |
| GTATAGAATGTTAGTTGGCA+TGG | + | chr6_3:43545002-43545021 | Msa0951700:CDS | 35.0% | |
| AGTGCATATGATGAGTTACT+CGG | + | chr6_3:43545370-43545389 | Msa0951700:intron | 35.0% | |
| TCATTCAAGAAGTCTTGAAG+GGG | - | chr6_3:43545399-43545418 | None:intergenic | 35.0% | |
| GTCATTCAAGAAGTCTTGAA+GGG | - | chr6_3:43545400-43545419 | None:intergenic | 35.0% | |
| ! | TTTTATGTGCATCAGCATCT+CGG | - | chr6_3:43545429-43545448 | None:intergenic | 35.0% |
| ACTGTCACCAAAATATGAGT+TGG | + | chr6_3:43545685-43545704 | Msa0951700:intron | 35.0% | |
| ! | GTCTCATCCAACTCATATTT+TGG | - | chr6_3:43545695-43545714 | None:intergenic | 35.0% |
| TCATATTATCTTAAAGCCGG+AGG | + | chr6_3:43545792-43545811 | Msa0951700:CDS | 35.0% | |
| GGATATAACAAAATGACCTC+CGG | - | chr6_3:43545811-43545830 | None:intergenic | 35.0% | |
| AACACTAGGGAAAACTAAAC+AGG | - | chr6_3:43545909-43545928 | None:intergenic | 35.0% | |
| ATCATCCAAGAAGTCTTGAA+GGG | - | chr6_3:43546062-43546081 | None:intergenic | 35.0% | |
| TTTGATGTGCATCAGTATCT+CGG | - | chr6_3:43546091-43546110 | None:intergenic | 35.0% | |
| ATTATGCTAAACAACAGTGC+TGG | + | chr6_3:43546144-43546163 | Msa0951700:intron | 35.0% | |
| ! | GACTTGCTTATTAAGCACTT+TGG | + | chr6_3:43546176-43546195 | Msa0951700:intron | 35.0% |
| !!! | AAAGTTGGAGGGCATTTTTT+AGG | + | chr6_3:43546374-43546393 | Msa0951700:intron | 35.0% |
| ! | TAGACGTATTGATCTAATGG+TGG | - | chr6_3:43546450-43546469 | None:intergenic | 35.0% |
| !!! | CACAAGCTTGTTTTTACCAT+TGG | - | chr6_3:43546516-43546535 | None:intergenic | 35.0% |
| AGGTTATATATTTCCGGGAA+TGG | + | chr6_3:43546646-43546665 | Msa0951700:intron | 35.0% | |
| AAATTGAGAGAATCCATTCC+CGG | - | chr6_3:43546662-43546681 | None:intergenic | 35.0% | |
| CAGAATGCCTAAGAAGAAAA+AGG | + | chr6_3:43547107-43547126 | Msa0951700:CDS | 35.0% | |
| ! | TCAGCATCCTTTTTCTTCTT+AGG | - | chr6_3:43547117-43547136 | None:intergenic | 35.0% |
| TTACATGCTTTCTCAAAAGC+AGG | - | chr6_3:43547149-43547168 | None:intergenic | 35.0% | |
| ! | TCTGTAACTTTTAGCAACCT+AGG | + | chr6_3:43547170-43547189 | Msa0951700:three_prime_UTR | 35.0% |
| !! | TTTTGATGACAATGCAACCT+AGG | + | chr6_3:43547197-43547216 | Msa0951700:three_prime_UTR | 35.0% |
| AATTATAGTAGCACATCCGT+TGG | - | chr6_3:43547320-43547339 | None:intergenic | 35.0% | |
| AGTGAACCGTGAGAAGAATA+GGG | - | chr6_3:43542756-43542775 | None:intergenic | 40.0% | |
| !! | TGCAAAGAGATTGGTGTTAG+CGG | - | chr6_3:43542796-43542815 | None:intergenic | 40.0% |
| !!! | AGTTTTTTGATACCTCGAGG+AGG | - | chr6_3:43542836-43542855 | None:intergenic | 40.0% |
| ! | CATCCGAATCCAATTTTTGC+TGG | + | chr6_3:43543624-43543643 | Msa0951700:intron | 40.0% |
| AGCCCAGCAAAAATTGGATT+CGG | - | chr6_3:43543630-43543649 | None:intergenic | 40.0% | |
| ! | TTTTGAATATGTGCAGGTCG+TGG | + | chr6_3:43543737-43543756 | Msa0951700:intron | 40.0% |
| TCATTGTAAACAGCTTCACC+AGG | - | chr6_3:43544037-43544056 | None:intergenic | 40.0% | |
| ATATGTTGTCAACACCACCA+AGG | - | chr6_3:43544589-43544608 | None:intergenic | 40.0% | |
| !! | TTGGTGGTGTTGACAACATA+TGG | + | chr6_3:43544588-43544607 | Msa0951700:CDS | 40.0% |
| TCTCACGTGTCTGATATTGT+TGG | + | chr6_3:43544757-43544776 | Msa0951700:CDS | 40.0% | |
| CTGATATTGTTGGTCCAGTA+AGG | + | chr6_3:43544767-43544786 | Msa0951700:intron | 40.0% | |
| ACCTGTTGTCTAAGTCTGAT+TGG | + | chr6_3:43544840-43544859 | Msa0951700:intron | 40.0% | |
| TCCAATCAGACTTAGACAAC+AGG | - | chr6_3:43544844-43544863 | None:intergenic | 40.0% | |
| AAAATTGACCACACCTGATC+AGG | - | chr6_3:43545057-43545076 | None:intergenic | 40.0% | |
| ACGTTCAGGCCAAAATATTC+TGG | - | chr6_3:43545107-43545126 | None:intergenic | 40.0% | |
| CGTCATTCAAGAAGTCTTGA+AGG | - | chr6_3:43545401-43545420 | None:intergenic | 40.0% | |
| TTTATGTGCATCAGCATCTC+GGG | - | chr6_3:43545428-43545447 | None:intergenic | 40.0% | |
| ! | TCTAATTTGATGAGTGCTGC+AGG | + | chr6_3:43545746-43545765 | Msa0951700:intron | 40.0% |
| TGCTGCAGGCAAGAATATTA+GGG | + | chr6_3:43545760-43545779 | Msa0951700:intron | 40.0% | |
| GGCTTCTAAACAAACCTTGA+TGG | - | chr6_3:43545832-43545851 | None:intergenic | 40.0% | |
| TGTGCATGTGATGAGTTACT+CGG | + | chr6_3:43546032-43546051 | Msa0951700:intron | 40.0% | |
| TCATCCAAGAAGTCTTGAAG+GGG | - | chr6_3:43546061-43546080 | None:intergenic | 40.0% | |
| CATCATCCAAGAAGTCTTGA+AGG | - | chr6_3:43546063-43546082 | None:intergenic | 40.0% | |
| TTGATGTGCATCAGTATCTC+GGG | - | chr6_3:43546090-43546109 | None:intergenic | 40.0% | |
| GACTGTCGAATCAATGCAAT+TGG | - | chr6_3:43546968-43546987 | None:intergenic | 40.0% | |
| !! | TCAAGAGTGACTTGCTCAAA+TGG | - | chr6_3:43547048-43547067 | None:intergenic | 40.0% |
| TCACTCTTGAACCATTTGAG+AGG | + | chr6_3:43547058-43547077 | Msa0951700:CDS | 40.0% | |
| CACTCTTGAACCATTTGAGA+GGG | + | chr6_3:43547059-43547078 | Msa0951700:CDS | 40.0% | |
| TGCTTTCTCAAAAGCAGGTT+AGG | - | chr6_3:43547144-43547163 | None:intergenic | 40.0% | |
| AAAAGAGAGACACGGGAAAC+GGG | - | chr6_3:43542656-43542675 | None:intergenic | 45.0% | |
| GAAAAGAGAGACACGGGAAA+CGG | - | chr6_3:43542657-43542676 | None:intergenic | 45.0% | |
| CAGTGAACCGTGAGAAGAAT+AGG | - | chr6_3:43542757-43542776 | None:intergenic | 45.0% | |
| TGGAATGAAAGGAGGAAGCA+AGG | + | chr6_3:43543931-43543950 | Msa0951700:CDS | 45.0% | |
| TACATTGTGCAGAGTGAGGA+TGG | + | chr6_3:43544506-43544525 | Msa0951700:intron | 45.0% | |
| TAACCAAGTCACGTCCACTT+CGG | - | chr6_3:43544921-43544940 | None:intergenic | 45.0% | |
| !! | TGGACGTGACTTGGTTAACA+TGG | + | chr6_3:43544924-43544943 | Msa0951700:CDS | 45.0% |
| GTGCTGCAGGCAAGAATATT+AGG | + | chr6_3:43545759-43545778 | Msa0951700:intron | 45.0% | |
| GATTCCCCTTCAAGACTTCT+TGG | + | chr6_3:43545392-43545411 | Msa0951700:intron | 45.0% | |
| GGCGAGACTTATTGATCCAA+TGG | + | chr6_3:43546497-43546516 | Msa0951700:intron | 45.0% | |
| ! | CAGTGAGGTGAACAAGTTGA+AGG | + | chr6_3:43547008-43547027 | Msa0951700:CDS | 45.0% |
| ! | TGAGGTGAACAAGTTGAAGG+CGG | + | chr6_3:43547011-43547030 | Msa0951700:CDS | 45.0% |
| ATCCACCAACAACACAAGCA+TGG | - | chr6_3:43547086-43547105 | None:intergenic | 45.0% | |
| !! | ATAAATGATTAAAATAAATA+AGG | - | chr6_3:43544194-43544213 | None:intergenic | 5.0% |
| GGGAGTGAAAAGAGAGACAC+GGG | - | chr6_3:43542663-43542682 | None:intergenic | 50.0% | |
| CGGGAGTGAAAAGAGAGACA+CGG | - | chr6_3:43542664-43542683 | None:intergenic | 50.0% | |
| ! | TGTCTCTCTTTTCACTCCCG+AGG | + | chr6_3:43542664-43542683 | Msa0951700:five_prime_UTR | 50.0% |
| !! | ATTGGTGTTAGCGGCGAGAA+AGG | - | chr6_3:43542787-43542806 | None:intergenic | 50.0% |
| ACTTCCGACTGCACACAAAC+CGG | - | chr6_3:43543501-43543520 | None:intergenic | 50.0% | |
| TGAATATGTGCAGGTCGTGG+TGG | + | chr6_3:43543740-43543759 | Msa0951700:intron | 50.0% | |
| !! | AGAGGTTTTGGTGGAGGAAG+AGG | + | chr6_3:43543812-43543831 | Msa0951700:CDS | 50.0% |
| ! | GGAGGAGATTTTAAGCCTCG+TGG | + | chr6_3:43543833-43543852 | Msa0951700:CDS | 50.0% |
| ! | GGAGATTTTAAGCCTCGTGG+TGG | + | chr6_3:43543836-43543855 | Msa0951700:CDS | 50.0% |
| ! | GATTTTAAGCCTCGTGGTGG+AGG | + | chr6_3:43543839-43543858 | Msa0951700:CDS | 50.0% |
| GGAAGAGGTGGAATGAAAGG+AGG | + | chr6_3:43543923-43543942 | Msa0951700:CDS | 50.0% | |
| GTTGAGCCCCATAGACATGA+AGG | + | chr6_3:43543959-43543978 | Msa0951700:CDS | 50.0% | |
| ! | GAACCCTTTCCGCTCTAAGT+TGG | + | chr6_3:43544553-43544572 | Msa0951700:CDS | 50.0% |
| CTGCCAACTTAGAGCGGAAA+GGG | - | chr6_3:43544559-43544578 | None:intergenic | 50.0% | |
| AGGTACAGGACTTTAGCACC+AGG | - | chr6_3:43544712-43544731 | None:intergenic | 50.0% | |
| GGTGCTAAAGTCCTGTACCT+AGG | + | chr6_3:43544712-43544731 | Msa0951700:CDS | 50.0% | |
| TGTACCTAGGAGCTGCTTCA+GGG | + | chr6_3:43544725-43544744 | Msa0951700:CDS | 50.0% | |
| GTAGAATTCTCCCACCGAAG+TGG | + | chr6_3:43544904-43544923 | Msa0951700:CDS | 50.0% | |
| TGATGTTGCTCAGCCTGATC+AGG | + | chr6_3:43545041-43545060 | Msa0951700:CDS | 50.0% | |
| CAAGCATGGTCCCTCTCAAA+TGG | - | chr6_3:43547072-43547091 | None:intergenic | 50.0% | |
| AGGGACCATGCTTGTGTTGT+TGG | + | chr6_3:43547078-43547097 | Msa0951700:CDS | 50.0% | |
| ! | GACCATGCTTGTGTTGTTGG+TGG | + | chr6_3:43547081-43547100 | Msa0951700:CDS | 50.0% |
| TTGAACATGGCTCCTCCTCG+AGG | + | chr6_3:43542821-43542840 | Msa0951700:exon | 55.0% | |
| ! | GGATCCGGTTTGTGTGCAGT+CGG | + | chr6_3:43543494-43543513 | Msa0951700:intron | 55.0% |
| TGTGCAGGTCGTGGTGGTTT+CGG | + | chr6_3:43543746-43543765 | Msa0951700:intron | 55.0% | |
| !!! | GGTGGTGGAGGTAGAGGTTT+TGG | + | chr6_3:43543800-43543819 | Msa0951700:CDS | 55.0% |
| !! | GGTGGAGGTAGAGGTTTTGG+TGG | + | chr6_3:43543803-43543822 | Msa0951700:CDS | 55.0% |
| !! | GGAGGTAGAGGTTTTGGTGG+AGG | + | chr6_3:43543806-43543825 | Msa0951700:CDS | 55.0% |
| !! | GGTTTTGGTGGAGGAAGAGG+AGG | + | chr6_3:43543815-43543834 | Msa0951700:CDS | 55.0% |
| AAACCTCTACCTCCACCACG+AGG | - | chr6_3:43543851-43543870 | None:intergenic | 55.0% | |
| !! | CGTGGTGGAGGTAGAGGTTT+TGG | + | chr6_3:43543851-43543870 | Msa0951700:CDS | 55.0% |
| !! | GGTGGAGGTAGAGGTTTTGG+AGG | + | chr6_3:43543803-43543822 | Msa0951700:CDS | 55.0% |
| !!! | GGAGGTAGAGGTTTTGGAGG+AGG | + | chr6_3:43543857-43543876 | Msa0951700:CDS | 55.0% |
| !!! | AGAGGTTTTGGAGGAGGCAG+AGG | + | chr6_3:43543863-43543882 | Msa0951700:CDS | 55.0% |
| GGCGGAAGAGGTGGAATGAA+AGG | + | chr6_3:43543920-43543939 | Msa0951700:CDS | 55.0% | |
| GCTGCCAACTTAGAGCGGAA+AGG | - | chr6_3:43544560-43544579 | None:intergenic | 55.0% | |
| CAGCAGCTGCCAACTTAGAG+CGG | - | chr6_3:43544565-43544584 | None:intergenic | 55.0% | |
| AAGTTGGCAGCTGCTGTCCT+TGG | + | chr6_3:43544569-43544588 | Msa0951700:CDS | 55.0% | |
| CTGAAGCAGCTCCTAGGTAC+AGG | - | chr6_3:43544726-43544745 | None:intergenic | 55.0% | |
| CTGTACCTAGGAGCTGCTTC+AGG | + | chr6_3:43544724-43544743 | Msa0951700:CDS | 55.0% | |
| TTGTCCCTGAAGCAGCTCCT+AGG | - | chr6_3:43544732-43544751 | None:intergenic | 55.0% | |
| CAAGTCACGTCCACTTCGGT+GGG | - | chr6_3:43544917-43544936 | None:intergenic | 55.0% | |
| TTGCTCAGCCTGATCAGGTG+TGG | + | chr6_3:43545046-43545065 | Msa0951700:intron | 55.0% | |
| CTCACTGCTGAACACTGCCT+CGG | - | chr6_3:43546995-43547014 | None:intergenic | 55.0% | |
| CGTGGTGGTTTCGGAGGAAG+AGG | + | chr6_3:43543755-43543774 | Msa0951700:CDS | 60.0% | |
| GGTGGTTTCGGAGGAAGAGG+AGG | + | chr6_3:43543758-43543777 | Msa0951700:CDS | 60.0% | |
| GGAGGAAGAGGAGGTGACAG+AGG | + | chr6_3:43543767-43543786 | Msa0951700:CDS | 60.0% | |
| GGAAGAGGAGGTGACAGAGG+AGG | + | chr6_3:43543770-43543789 | Msa0951700:CDS | 60.0% | |
| GGAGGTGACAGAGGAGGAAG+AGG | + | chr6_3:43543776-43543795 | Msa0951700:CDS | 60.0% | |
| GGTGACAGAGGAGGAAGAGG+TGG | + | chr6_3:43543779-43543798 | Msa0951700:CDS | 60.0% | |
| GACAGAGGAGGAAGAGGTGG+TGG | + | chr6_3:43543782-43543801 | Msa0951700:CDS | 60.0% | |
| ! | AGAGGAGGAAGAGGTGGTGG+TGG | + | chr6_3:43543785-43543804 | Msa0951700:CDS | 60.0% |
| !! | AGAGGTGGTGGTGGAGGTAG+AGG | + | chr6_3:43543794-43543813 | Msa0951700:CDS | 60.0% |
| ! | AAGCCTCGTGGTGGAGGTAG+AGG | + | chr6_3:43543845-43543864 | Msa0951700:CDS | 60.0% |
| TTGGCAGCTGCTGTCCTTGG+TGG | + | chr6_3:43544572-43544591 | Msa0951700:CDS | 60.0% | |
| CCAAGTCACGTCCACTTCGG+TGG | - | chr6_3:43544918-43544937 | None:intergenic | 60.0% | |
| CCACCGAAGTGGACGTGACT+TGG | + | chr6_3:43544915-43544934 | Msa0951700:CDS | 60.0% | |
| TGATTCGACAGTCCCTGCCG+AGG | + | chr6_3:43546975-43546994 | Msa0951700:CDS | 60.0% | |
| TGCTGAACACTGCCTCGGCA+GGG | - | chr6_3:43546990-43547009 | None:intergenic | 60.0% | |
| CGAGGCAGTGTTCAGCAGTG+AGG | + | chr6_3:43546993-43547012 | Msa0951700:CDS | 60.0% | |
| GCAGGTCGTGGTGGTTTCGG+AGG | + | chr6_3:43543749-43543768 | Msa0951700:intron | 65.0% | |
| !! | GGAGGAAGAGGTGGTGGTGG+AGG | + | chr6_3:43543788-43543807 | Msa0951700:CDS | 65.0% |
| AGGAGCCCGTGGAGGAGGAA+GGG | + | chr6_3:43543883-43543902 | Msa0951700:CDS | 65.0% | |
| ACCACCCCTTCCTCCTCCAC+GGG | - | chr6_3:43543891-43543910 | None:intergenic | 65.0% | |
| CACCACCCCTTCCTCCTCCA+CGG | - | chr6_3:43543892-43543911 | None:intergenic | 65.0% | |
| CTGCTGAACACTGCCTCGGC+AGG | - | chr6_3:43546991-43547010 | None:intergenic | 65.0% | |
| GAGGAGCCCGTGGAGGAGGA+AGG | + | chr6_3:43543882-43543901 | Msa0951700:CDS | 70.0% | |
| GGAGCCCGTGGAGGAGGAAG+GGG | + | chr6_3:43543884-43543903 | Msa0951700:CDS | 70.0% | |
| CGTGGAGGAGGAAGGGGTGG+TGG | + | chr6_3:43543890-43543909 | Msa0951700:CDS | 70.0% | |
| ! | GGAGGAAGGGGTGGTGGTCG+TGG | + | chr6_3:43543896-43543915 | Msa0951700:CDS | 70.0% |
| ! | GGAAGGGGTGGTGGTCGTGG+TGG | + | chr6_3:43543899-43543918 | Msa0951700:CDS | 70.0% |
| ! | AGGGGTGGTGGTCGTGGTGG+CGG | + | chr6_3:43543902-43543921 | Msa0951700:CDS | 70.0% |
| !! | GGTGGTCGTGGTGGCGGAAG+AGG | + | chr6_3:43543908-43543927 | Msa0951700:CDS | 70.0% |
| !! | GGTCGTGGTGGCGGAAGAGG+TGG | + | chr6_3:43543911-43543930 | Msa0951700:CDS | 70.0% |
| GGAGGAGGCAGAGGAGCCCG+TGG | + | chr6_3:43543872-43543891 | Msa0951700:CDS | 75.0% | |
| GGAGGCAGAGGAGCCCGTGG+AGG | + | chr6_3:43543875-43543894 | Msa0951700:CDS | 75.0% | |
| GGCAGAGGAGCCCGTGGAGG+AGG | + | chr6_3:43543878-43543897 | Msa0951700:CDS | 75.0% | |
| GCCCGTGGAGGAGGAAGGGG+TGG | + | chr6_3:43543887-43543906 | Msa0951700:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 43542646 | 43547342 | 43542646 | ID=Msa0951700;Name=Msa0951700 |
| chr6_3 | mRNA | 43542646 | 43547342 | 43542646 | ID=Msa0951700-mRNA-1;Parent=Msa0951700;Name=Msa0951700-mRNA-1;_AED=0.22;_eAED=0.22;_QI=181|1|1|1|0.85|0.75|8|180|311 |
| chr6_3 | exon | 43542646 | 43542842 | 43542646 | ID=Msa0951700-mRNA-1:exon:9998;Parent=Msa0951700-mRNA-1 |
| chr6_3 | exon | 43543753 | 43544075 | 43543753 | ID=Msa0951700-mRNA-1:exon:9999;Parent=Msa0951700-mRNA-1 |
| chr6_3 | exon | 43544518 | 43544613 | 43544518 | ID=Msa0951700-mRNA-1:exon:10000;Parent=Msa0951700-mRNA-1 |
| chr6_3 | exon | 43544706 | 43544783 | 43544706 | ID=Msa0951700-mRNA-1:exon:10001;Parent=Msa0951700-mRNA-1 |
| chr6_3 | exon | 43544886 | 43545062 | 43544886 | ID=Msa0951700-mRNA-1:exon:10002;Parent=Msa0951700-mRNA-1 |
| chr6_3 | exon | 43545768 | 43545836 | 43545768 | ID=Msa0951700-mRNA-1:exon:10003;Parent=Msa0951700-mRNA-1 |
| chr6_3 | exon | 43546964 | 43547270 | 43546964 | ID=Msa0951700-mRNA-1:exon:10004;Parent=Msa0951700-mRNA-1 |
| chr6_3 | exon | 43547293 | 43547342 | 43547293 | ID=Msa0951700-mRNA-1:exon:10005;Parent=Msa0951700-mRNA-1 |
| chr6_3 | five_prime_UTR | 43542646 | 43542826 | 43542646 | ID=Msa0951700-mRNA-1:five_prime_utr;Parent=Msa0951700-mRNA-1 |
| chr6_3 | CDS | 43542827 | 43542842 | 43542827 | ID=Msa0951700-mRNA-1:cds;Parent=Msa0951700-mRNA-1 |
| chr6_3 | CDS | 43543753 | 43544075 | 43543753 | ID=Msa0951700-mRNA-1:cds;Parent=Msa0951700-mRNA-1 |
| chr6_3 | CDS | 43544518 | 43544613 | 43544518 | ID=Msa0951700-mRNA-1:cds;Parent=Msa0951700-mRNA-1 |
| chr6_3 | CDS | 43544706 | 43544783 | 43544706 | ID=Msa0951700-mRNA-1:cds;Parent=Msa0951700-mRNA-1 |
| chr6_3 | CDS | 43544886 | 43545062 | 43544886 | ID=Msa0951700-mRNA-1:cds;Parent=Msa0951700-mRNA-1 |
| chr6_3 | CDS | 43545768 | 43545836 | 43545768 | ID=Msa0951700-mRNA-1:cds;Parent=Msa0951700-mRNA-1 |
| chr6_3 | CDS | 43546964 | 43547140 | 43546964 | ID=Msa0951700-mRNA-1:cds;Parent=Msa0951700-mRNA-1 |
| chr6_3 | three_prime_UTR | 43547141 | 43547270 | 43547141 | ID=Msa0951700-mRNA-1:three_prime_utr;Parent=Msa0951700-mRNA-1 |
| chr6_3 | three_prime_UTR | 43547293 | 43547342 | 43547293 | ID=Msa0951700-mRNA-1:three_prime_utr;Parent=Msa0951700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
