Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183090 | XP_003592692.1 | 99.365 | 315 | 0 | 1 | 1 | 315 | 1 | 313 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183090 | sp|Q94AH9|FBRL2_ARATH | 90.984 | 244 | 22 | 0 | 71 | 314 | 74 | 317 | 1.01e-166 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183090 | G7IDD7 | 99.365 | 315 | 0 | 1 | 1 | 315 | 1 | 313 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0183090 | 0.852210 | 5.359650e-61 | -8.615850e-47 |
| Msa0002790 | Msa0183090 | 0.830903 | 2.259963e-55 | -8.615850e-47 |
| Msa0032780 | Msa0183090 | 0.807794 | 4.246385e-50 | -8.615850e-47 |
| Msa0044890 | Msa0183090 | 0.964938 | 5.825320e-124 | -8.615850e-47 |
| Msa0068970 | Msa0183090 | 0.964654 | 1.336430e-123 | -8.615850e-47 |
| Msa0074030 | Msa0183090 | 0.806494 | 8.005303e-50 | -8.615850e-47 |
| Msa0086750 | Msa0183090 | 0.804737 | 1.871156e-49 | -8.615850e-47 |
| Msa0116670 | Msa0183090 | 0.808940 | 2.418702e-50 | -8.615850e-47 |
| Msa0129660 | Msa0183090 | 0.809431 | 1.898738e-50 | -8.615850e-47 |
| Msa0140850 | Msa0183090 | 0.809673 | 1.684354e-50 | -8.615850e-47 |
| Msa0173530 | Msa0183090 | 0.810720 | 1.001704e-50 | -8.615850e-47 |
| Msa0183090 | Msa0189700 | 0.824356 | 8.439110e-54 | -8.615850e-47 |
| Msa0183090 | Msa0194940 | 0.806901 | 6.568431e-50 | -8.615850e-47 |
| Msa0183090 | Msa0210330 | 0.841738 | 3.960695e-58 | -8.615850e-47 |
| Msa0183090 | Msa0210360 | 0.802280 | 6.047266e-49 | -8.615850e-47 |
| Msa0183090 | Msa0232010 | 0.822229 | 2.648588e-53 | -8.615850e-47 |
| Msa0183090 | Msa0232080 | 0.821759 | 3.404040e-53 | -8.615850e-47 |
| Msa0183090 | Msa0250820 | 0.867468 | 1.338241e-65 | -8.615850e-47 |
| Msa0183090 | Msa0250870 | 0.827137 | 1.846723e-54 | -8.615850e-47 |
| Msa0183090 | Msa0257450 | 0.867833 | 1.022147e-65 | -8.615850e-47 |
| Msa0183090 | Msa0296720 | 0.856013 | 4.285300e-62 | -8.615850e-47 |
| Msa0183090 | Msa0342850 | 0.824152 | 9.424173e-54 | -8.615850e-47 |
| Msa0183090 | Msa0471880 | 0.826337 | 2.867421e-54 | -8.615850e-47 |
| Msa0183090 | Msa0482650 | 0.805536 | 1.273489e-49 | -8.615850e-47 |
| Msa0183090 | Msa0486070 | 0.951598 | 1.455910e-109 | -8.615850e-47 |
| Msa0183090 | Msa0550420 | 0.815453 | 9.172824e-52 | -8.615850e-47 |
| Msa0183090 | Msa0698780 | 0.809437 | 1.893371e-50 | -8.615850e-47 |
| Msa0183090 | Msa0830090 | 0.813671 | 2.274598e-51 | -8.615850e-47 |
| Msa0183090 | Msa0881290 | 0.823101 | 1.660540e-53 | -8.615850e-47 |
| Msa0183090 | Msa0930490 | 0.809778 | 1.599217e-50 | -8.615850e-47 |
| Msa0183090 | Msa0951700 | 0.800347 | 1.503962e-48 | -8.615850e-47 |
| Msa0183090 | Msa0953310 | 0.808202 | 3.477860e-50 | -8.615850e-47 |
| Msa0183090 | Msa1021470 | 0.813369 | 2.650472e-51 | -8.615850e-47 |
| Msa0183090 | Msa1078870 | 0.855621 | 5.579802e-62 | -8.615850e-47 |
| Msa0183090 | Msa1078980 | 0.822943 | 1.807001e-53 | -8.615850e-47 |
| Msa0183090 | Msa1079920 | 0.804894 | 1.734693e-49 | -8.615850e-47 |
| Msa0183090 | Msa1080350 | 0.807194 | 5.694970e-50 | -8.615850e-47 |
| Msa0183090 | Msa1081340 | 0.847584 | 1.054210e-59 | -8.615850e-47 |
| Msa0183090 | Msa1124850 | 0.819980 | 8.731860e-53 | -8.615850e-47 |
| Msa0183090 | Msa1125860 | 0.812171 | 4.848435e-51 | -8.615850e-47 |
| Msa0183090 | Msa1126060 | 0.805868 | 1.084374e-49 | -8.615850e-47 |
| Msa0183090 | Msa1128120 | 0.810082 | 1.375424e-50 | -8.615850e-47 |
| Msa0183090 | Msa1147670 | 0.811626 | 6.371402e-51 | -8.615850e-47 |
| Msa0183090 | Msa1167540 | 0.811843 | 5.716132e-51 | -8.615850e-47 |
| Msa0183090 | Msa1169180 | 0.830741 | 2.475272e-55 | -8.615850e-47 |
| Msa0183090 | Msa1215820 | 0.855284 | 6.996779e-62 | -8.615850e-47 |
| Msa0183090 | Msa1218110 | 0.812873 | 3.404937e-51 | -8.615850e-47 |
| Msa0183090 | Msa1258390 | 0.800051 | 1.728132e-48 | -8.615850e-47 |
| Msa0183090 | Msa1299590 | 0.824525 | 7.701764e-54 | -8.615850e-47 |
| Msa0183090 | Msa1311400 | 0.832065 | 1.169155e-55 | -8.615850e-47 |
| Msa0183090 | Msa1332250 | 0.837022 | 6.640290e-57 | -8.615850e-47 |
| Msa0183090 | Msa1338190 | 0.829278 | 5.629971e-55 | -8.615850e-47 |
| Msa0183090 | Msa1341130 | 0.801592 | 8.371371e-49 | -8.615850e-47 |
| Msa0183090 | Msa1343260 | 0.827576 | 1.449414e-54 | -8.615850e-47 |
| Msa0183090 | Msa1362210 | 0.831879 | 1.299452e-55 | -8.615850e-47 |
| Msa0183090 | Msa1364480 | 0.847943 | 8.396230e-60 | -8.615850e-47 |
| Msa0183090 | Msa1366180 | 0.805131 | 1.548230e-49 | -8.615850e-47 |
| Msa0183090 | Msa1397100 | 0.822290 | 2.563536e-53 | -8.615850e-47 |
| Msa0183090 | Msa1397660 | 0.816985 | 4.170042e-52 | -8.615850e-47 |
| Msa0183090 | Msa1418690 | 0.841465 | 4.673673e-58 | -8.615850e-47 |
| Msa0183090 | Msa1418760 | 0.809249 | 2.077255e-50 | -8.615850e-47 |
| Msa0183090 | Msa1426120 | 0.849504 | 3.098947e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183090 | MtrunA17_Chr1g0211621 | 99.365 | 315 | 0 | 1 | 1 | 315 | 1 | 313 | 0.0 | 616 |
| Msa0183090 | MtrunA17_Chr6g0468501 | 93.985 | 266 | 16 | 0 | 50 | 315 | 12 | 277 | 4.80e-173 | 480 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183090 | AT4G25630.1 | 90.984 | 244 | 22 | 0 | 71 | 314 | 74 | 317 | 1.03e-167 | 469 |
| Msa0183090 | AT5G52470.1 | 90.083 | 242 | 24 | 0 | 71 | 312 | 63 | 304 | 2.79e-165 | 462 |
| Msa0183090 | AT5G52490.1 | 71.074 | 242 | 70 | 0 | 69 | 310 | 51 | 292 | 2.49e-128 | 368 |
| Msa0183090 | AT5G52470.2 | 93.902 | 164 | 10 | 0 | 71 | 234 | 63 | 226 | 3.28e-111 | 324 |
Find 122 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAATACCCTCATGTCTA+TGG | 0.205671 | 1_4:-71888266 | None:intergenic |
| GGAGGTGGGAGAGGTGGTTT+TGG | 0.245696 | 1_4:+71888102 | Msa0183090:CDS |
| TGTCTAGCATCTTCAATAAT+TGG | 0.284529 | 1_4:-71889106 | None:intergenic |
| CTTTACCTAGGAGCTGCTTC+TGG | 0.296675 | 1_4:+71888862 | Msa0183090:CDS |
| AGTTATACAACATGCATATA+GGG | 0.304600 | 1_4:-71890976 | None:intergenic |
| TAAAATATAGTGATATGTTT+TGG | 0.324425 | 1_4:+71890918 | Msa0183090:three_prime_UTR |
| TATAACATTAGTACGCTTCT+TGG | 0.324454 | 1_4:-71889083 | None:intergenic |
| CTAAGACAGAGTATAGAATT+TGG | 0.324854 | 1_4:+71888680 | Msa0183090:CDS |
| TGTACAGGCCGTGGTGGTTC+TGG | 0.333264 | 1_4:+71888036 | Msa0183090:intron |
| CAGTTATACAACATGCATAT+AGG | 0.348827 | 1_4:-71890977 | None:intergenic |
| GGAGGAAGGGGTGGTGATAG+AGG | 0.351363 | 1_4:+71888072 | Msa0183090:CDS |
| TGGGCGTGACTTGGTCAATA+TGG | 0.352165 | 1_4:+71889060 | Msa0183090:CDS |
| TCAAGAGTCACTTGCTCCAT+TGG | 0.352395 | 1_4:-71890649 | None:intergenic |
| GGCCGTGGTGGTTCTGGTGG+AGG | 0.363670 | 1_4:+71888042 | Msa0183090:intron |
| GGAGGCCGTGGTGGCGGAAG+AGG | 0.374341 | 1_4:+71888204 | Msa0183090:CDS |
| GGAGGTAGAGGAGGTGGGAG+AGG | 0.378171 | 1_4:+71888093 | Msa0183090:CDS |
| GATAGAGGAGGTAGAGGAGG+TGG | 0.391157 | 1_4:+71888087 | Msa0183090:CDS |
| CGGAAGAGGTGGTGGAATGA+AGG | 0.392714 | 1_4:+71888218 | Msa0183090:CDS |
| AGGGACCATGCTTGTGTTGT+TGG | 0.394797 | 1_4:+71890682 | Msa0183090:CDS |
| GTCACTAAGAATCTTGTTCC+TGG | 0.395090 | 1_4:+71888315 | Msa0183090:CDS |
| GGCAGAGGAGGACGTGGAGG+AGG | 0.399351 | 1_4:+71888186 | Msa0183090:CDS |
| TGATGTTGCTCAGCCTGATC+AGG | 0.400610 | 1_4:+71889177 | Msa0183090:CDS |
| GGAGGGTTCAGAGGAGGAAG+GGG | 0.404742 | 1_4:+71888060 | Msa0183090:CDS |
| CGTGGAGGAGGCCGTGGTGG+CGG | 0.406160 | 1_4:+71888198 | Msa0183090:CDS |
| GGAGGAGGCAGAGGAGGACG+TGG | 0.412568 | 1_4:+71888180 | Msa0183090:CDS |
| AAATTAAACCACACCTGATC+AGG | 0.414931 | 1_4:-71889190 | None:intergenic |
| AGAGGTGGCGGTAGAGGTGG+AGG | 0.420597 | 1_4:+71888162 | Msa0183090:CDS |
| GGGTTCAGAGGAGGAAGGGG+TGG | 0.421936 | 1_4:+71888063 | Msa0183090:CDS |
| ACACTTTGTTATTTCTATCA+AGG | 0.422492 | 1_4:+71890221 | Msa0183090:CDS |
| GGTAGAGGTGGAGGAGGCAG+AGG | 0.423799 | 1_4:+71888171 | Msa0183090:CDS |
| TTGGTGGTGTCGACAATATA+TGG | 0.424660 | 1_4:+71888737 | Msa0183090:CDS |
| GGAGGACGTGGAGGAGGCCG+TGG | 0.430468 | 1_4:+71888192 | Msa0183090:CDS |
| TGTGTTCTGTTACCTCGAAC+AGG | 0.438947 | 1_4:-71887866 | None:intergenic |
| GGAGGACGAGGAGGAGATAG+AGG | 0.440185 | 1_4:+71888123 | Msa0183090:CDS |
| AACTGTGGAATCAATACAAT+TGG | 0.448320 | 1_4:-71890569 | None:intergenic |
| CCATCGAAGTGGGCGTGACT+TGG | 0.458744 | 1_4:+71889051 | Msa0183090:CDS |
| ATAGAGGAGGTAGAGGAGGT+GGG | 0.464408 | 1_4:+71888088 | Msa0183090:CDS |
| CGTGGTGGCGGAAGAGGTGG+TGG | 0.465952 | 1_4:+71888210 | Msa0183090:CDS |
| GCTAGAGGTGGCGGTAGAGG+TGG | 0.466327 | 1_4:+71888159 | Msa0183090:CDS |
| TCTCATGTGTCTGATATTGT+TGG | 0.470006 | 1_4:+71888895 | Msa0183090:CDS |
| AGATAGAGGTACCCCTTTCA+AGG | 0.470760 | 1_4:+71888137 | Msa0183090:CDS |
| GCCAACCAACATTCTGTACT+TGG | 0.472147 | 1_4:-71889134 | None:intergenic |
| AAGTTGGCAGCTGCTGTCCT+TGG | 0.472296 | 1_4:+71888718 | Msa0183090:CDS |
| GCCGTGGTGGTTCTGGTGGA+GGG | 0.473475 | 1_4:+71888043 | Msa0183090:CDS |
| GGTAGAGGAGGTGGGAGAGG+TGG | 0.474660 | 1_4:+71888096 | Msa0183090:CDS |
| AAGGCTAGAGGTGGCGGTAG+AGG | 0.477379 | 1_4:+71888156 | Msa0183090:CDS |
| CGCCACCTCTAGCCTTGAAA+GGG | 0.477576 | 1_4:-71888149 | None:intergenic |
| GAAAATACCCTCATGTCTAT+GGG | 0.477789 | 1_4:-71888265 | None:intergenic |
| CCAAGTCACGCCCACTTCGA+TGG | 0.482871 | 1_4:-71889051 | None:intergenic |
| GGTGGTGATAGAGGAGGTAG+AGG | 0.485873 | 1_4:+71888081 | Msa0183090:CDS |
| GGCCGTGGTGGCGGAAGAGG+TGG | 0.485933 | 1_4:+71888207 | Msa0183090:CDS |
| GGAAGAGGTGGTGGAATGAA+GGG | 0.492329 | 1_4:+71888219 | Msa0183090:CDS |
| CAAGCATGGTCCCTCTCAAA+TGG | 0.492656 | 1_4:-71890673 | None:intergenic |
| GGTGGCGGTAGAGGTGGAGG+AGG | 0.494671 | 1_4:+71888165 | Msa0183090:CDS |
| GACCATGCTTGTGTTGTTGG+TGG | 0.497588 | 1_4:+71890685 | Msa0183090:CDS |
| TGAGAAGAGGGTTACCGTGC+AGG | 0.499140 | 1_4:+71888353 | Msa0183090:CDS |
| GCGCTGAATACTGCCTCAGC+TGG | 0.502016 | 1_4:-71890592 | None:intergenic |
| GCTTCATATTATCTCAAAGC+TGG | 0.503141 | 1_4:+71890195 | Msa0183090:CDS |
| GGTGATAGAGGAGGTAGAGG+AGG | 0.504276 | 1_4:+71888084 | Msa0183090:CDS |
| TGCGAAGAGTTTGTTGAGAA+CGG | 0.505428 | 1_4:-71887823 | None:intergenic |
| CAGAAGCAGCTCCTAGGTAA+AGG | 0.506248 | 1_4:-71888861 | None:intergenic |
| CTCAAAATATAGAGGCTACT+CGG | 0.506705 | 1_4:-71890737 | None:intergenic |
| ACCAACATTCTGTACTTGGC+AGG | 0.513961 | 1_4:-71889130 | None:intergenic |
| CCGCCACCTCTAGCCTTGAA+AGG | 0.514108 | 1_4:-71888150 | None:intergenic |
| TTGGCAGCTGCTGTCCTTGG+TGG | 0.517332 | 1_4:+71888721 | Msa0183090:CDS |
| AGCTGATCAATTTAAGCCAA+TGG | 0.520445 | 1_4:+71890633 | Msa0183090:CDS |
| AGAGGTGGAGGAGGCAGAGG+AGG | 0.520806 | 1_4:+71888174 | Msa0183090:CDS |
| TTGTTCCAGAAGCAGCTCCT+AGG | 0.523899 | 1_4:-71888867 | None:intergenic |
| TTGTTGAGAACGGCTACAAA+GGG | 0.524003 | 1_4:-71887813 | None:intergenic |
| TCATTGTAAACAGCTTCTCC+AGG | 0.524882 | 1_4:-71888333 | None:intergenic |
| TGGAATGAAGGGAGGAAGCA+AGG | 0.532988 | 1_4:+71888230 | Msa0183090:CDS |
| ACAATGGCTCCTCCTGTTCG+AGG | 0.533054 | 1_4:+71887854 | Msa0183090:exon |
| ACTTATGTTATATTTGCTGA+TGG | 0.533939 | 1_4:+71890868 | Msa0183090:three_prime_UTR |
| TGGAGGGTTCAGAGGAGGAA+GGG | 0.537472 | 1_4:+71888059 | Msa0183090:CDS |
| GAACCCTTTCCGTTCTAAGT+TGG | 0.539930 | 1_4:+71888702 | Msa0183090:CDS |
| GGAGGCAGAGGAGGACGTGG+AGG | 0.542244 | 1_4:+71888183 | Msa0183090:CDS |
| GTACAGAATGTTGGTTGGCA+TGG | 0.545696 | 1_4:+71889138 | Msa0183090:CDS |
| TACCATTGTGTCACCAACTT+AGG | 0.548669 | 1_4:+71890768 | Msa0183090:three_prime_UTR |
| CCTTTCAAGGCTAGAGGTGG+CGG | 0.550070 | 1_4:+71888150 | Msa0183090:CDS |
| TTTGTTGAGAACGGCTACAA+AGG | 0.552434 | 1_4:-71887814 | None:intergenic |
| TACTGCCTCAGCTGGAACTG+TGG | 0.556438 | 1_4:-71890584 | None:intergenic |
| CTGCCAACTTAGAACGGAAA+GGG | 0.557631 | 1_4:-71888705 | None:intergenic |
| AGGTAAAGGACTTTAGCGCC+AGG | 0.557851 | 1_4:-71888847 | None:intergenic |
| CAAGTCACGCCCACTTCGAT+GGG | 0.558873 | 1_4:-71889050 | None:intergenic |
| ACAGGCCGTGGTGGTTCTGG+TGG | 0.566444 | 1_4:+71888039 | Msa0183090:intron |
| GACTCTTGAACCATTTGAGA+GGG | 0.572197 | 1_4:+71890663 | Msa0183090:CDS |
| GTGGAGGGTTCAGAGGAGGA+AGG | 0.574068 | 1_4:+71888058 | Msa0183090:CDS |
| GGTTCTGGTGGAGGGTTCAG+AGG | 0.575244 | 1_4:+71888051 | Msa0183090:CDS |
| AGAGGTGGTGGAATGAAGGG+AGG | 0.576093 | 1_4:+71888222 | Msa0183090:CDS |
| GGACGTGGAGGAGGCCGTGG+TGG | 0.585474 | 1_4:+71888195 | Msa0183090:CDS |
| CAGCAGCTGCCAACTTAGAA+CGG | 0.593341 | 1_4:-71888711 | None:intergenic |
| TCTGGTGGAGGGTTCAGAGG+AGG | 0.598909 | 1_4:+71888054 | Msa0183090:CDS |
| GGAAGGGGTGGTGATAGAGG+AGG | 0.599693 | 1_4:+71888075 | Msa0183090:CDS |
| AAGCTGTTTACAATGAGAAG+AGG | 0.601232 | 1_4:+71888340 | Msa0183090:CDS |
| AGCTGTTTACAATGAGAAGA+GGG | 0.603845 | 1_4:+71888341 | Msa0183090:CDS |
| GTTGAACCCCATAGACATGA+GGG | 0.606951 | 1_4:+71888258 | Msa0183090:CDS |
| GTTATACAACATGCATATAG+GGG | 0.607535 | 1_4:-71890975 | None:intergenic |
| TGATTCCACAGTTCCAGCTG+AGG | 0.607935 | 1_4:+71890579 | Msa0183090:CDS |
| TGACTCTTGAACCATTTGAG+AGG | 0.609035 | 1_4:+71890662 | Msa0183090:CDS |
| GCATATAGGGGTTAGACTCG+TGG | 0.613422 | 1_4:-71890963 | None:intergenic |
| GCCAAGTACAGAATGTTGGT+TGG | 0.616130 | 1_4:+71889133 | Msa0183090:CDS |
| TGTTGAACCCCATAGACATG+AGG | 0.622170 | 1_4:+71888257 | Msa0183090:CDS |
| TAGAATTCTCCCATCGAAGT+GGG | 0.624110 | 1_4:+71889041 | Msa0183090:CDS |
| TCATATTATCTCAAAGCTGG+AGG | 0.625407 | 1_4:+71890198 | Msa0183090:CDS |
| ACCCCTTTCAAGGCTAGAGG+TGG | 0.626063 | 1_4:+71888147 | Msa0183090:CDS |
| CTCCTAAGTTGGTGACACAA+TGG | 0.628348 | 1_4:-71890770 | None:intergenic |
| GCTGCCAACTTAGAACGGAA+AGG | 0.630241 | 1_4:-71888706 | None:intergenic |
| TGATATTGTACAGGCCGTGG+TGG | 0.630649 | 1_4:+71888030 | Msa0183090:intron |
| TCCTGCCAAGTACAGAATGT+TGG | 0.644769 | 1_4:+71889129 | Msa0183090:CDS |
| CACCACCTCTTCCGCCACCA+CGG | 0.647973 | 1_4:-71888209 | None:intergenic |
| AGCCACCAACAACACAAGCA+TGG | 0.648785 | 1_4:-71890687 | None:intergenic |
| TCTTCGCAATCTCTCTACAA+TGG | 0.652523 | 1_4:+71887838 | Msa0183090:exon |
| GGTACCCCTTTCAAGGCTAG+AGG | 0.653441 | 1_4:+71888144 | Msa0183090:CDS |
| AAAATACCCTCATGTCTATG+GGG | 0.663716 | 1_4:-71888264 | None:intergenic |
| GTAGAATTCTCCCATCGAAG+TGG | 0.663836 | 1_4:+71889040 | Msa0183090:CDS |
| GGCGCTAAAGTCCTTTACCT+AGG | 0.679116 | 1_4:+71888850 | Msa0183090:CDS |
| ACCCTCCACCAGAACCACCA+CGG | 0.696616 | 1_4:-71888044 | None:intergenic |
| GCCACCTCTAGCCTTGAAAG+GGG | 0.697135 | 1_4:-71888148 | None:intergenic |
| TGAGAAAGGAAATACCTGCA+CGG | 0.697697 | 1_4:-71888367 | None:intergenic |
| GTTCTGTTACCTCGAACAGG+AGG | 0.704487 | 1_4:-71887863 | None:intergenic |
| TGAGGCAGTATTCAGCGCTG+AGG | 0.706093 | 1_4:+71890597 | Msa0183090:CDS |
| ATATATTGTCGACACCACCA+AGG | 0.737399 | 1_4:-71888735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTGTTAAAATCAAAT+GGG | + | chr1_4:71887939-71887958 | Msa0183090:intron | 10.0% |
| !! | TGAAAATTTATAAACAAAAT+TGG | - | chr1_4:71889584-71889603 | None:intergenic | 10.0% |
| !! | GAAAATCATTAAAATAAATT+AGG | - | chr1_4:71889837-71889856 | None:intergenic | 10.0% |
| !!! | TTTTTAATTTGTTAACTTTT+TGG | + | chr1_4:71889860-71889879 | Msa0183090:intron | 10.0% |
| !!! | CATTTGATTTTAACAAATAA+AGG | - | chr1_4:71887940-71887959 | None:intergenic | 15.0% |
| !!! | CTTTATTTGTTAAAATCAAA+TGG | + | chr1_4:71887938-71887957 | Msa0183090:intron | 15.0% |
| !! | CATATTATTCTATTTAATAG+TGG | + | chr1_4:71888614-71888633 | Msa0183090:intron | 15.0% |
| !! | TGTCAATATAATGTATTTAA+AGG | - | chr1_4:71888801-71888820 | None:intergenic | 15.0% |
| !!! | TTATATTGACATCTTAATTT+TGG | + | chr1_4:71888810-71888829 | Msa0183090:intron | 15.0% |
| !! | CAAAAATTTATAAACAAAAC+AGG | - | chr1_4:71889558-71889577 | None:intergenic | 15.0% |
| !! | ATATGATGTTTATTAAATAG+TGG | + | chr1_4:71889925-71889944 | Msa0183090:intron | 15.0% |
| !! | TAATGCATAACAAAAAAATA+CGG | - | chr1_4:71890325-71890344 | None:intergenic | 15.0% |
| !!! | CAATTTTATTTTGTATTTGT+AGG | + | chr1_4:71890546-71890565 | Msa0183090:intron | 15.0% |
| !!! | TTTTTTATCACTTGTTATTT+AGG | + | chr1_4:71890795-71890814 | Msa0183090:three_prime_UTR | 15.0% |
| !!! | TCACTATATTTTAGTAATTT+TGG | - | chr1_4:71890911-71890930 | None:intergenic | 15.0% |
| !!! | TAAAATATAGTGATATGTTT+TGG | + | chr1_4:71890918-71890937 | Msa0183090:three_prime_UTR | 15.0% |
| !! | ATGTTATTGTCTAGTAAAAT+AGG | - | chr1_4:71888496-71888515 | None:intergenic | 20.0% |
| !! | TACTCTTAACATAAAAAAGA+GGG | - | chr1_4:71889217-71889236 | None:intergenic | 20.0% |
| !!! | GTGTAAAATGTAAAATGTTT+TGG | + | chr1_4:71889388-71889407 | Msa0183090:intron | 20.0% |
| !!! | GTTTTATAATGTTTAAGAAC+AGG | + | chr1_4:71889743-71889762 | Msa0183090:intron | 20.0% |
| !!! | TTTTAAAGCTTACTTTCTAT+AGG | + | chr1_4:71890283-71890302 | Msa0183090:intron | 20.0% |
| ! | AATAAACTCTAATTCGAACA+AGG | - | chr1_4:71887900-71887919 | None:intergenic | 25.0% |
| ! | AACACAAAACATACATATGT+TGG | - | chr1_4:71888966-71888985 | None:intergenic | 25.0% |
| !! | ATATGTATGTTTTGTGTTTG+AGG | + | chr1_4:71888968-71888987 | Msa0183090:intron | 25.0% |
| ! | GTACTCTTAACATAAAAAAG+AGG | - | chr1_4:71889218-71889237 | None:intergenic | 25.0% |
| ! | ATAATGTTTAAGAACAGGAT+TGG | + | chr1_4:71889748-71889767 | Msa0183090:intron | 25.0% |
| ! | TAATGTTTAAGAACAGGATT+GGG | + | chr1_4:71889749-71889768 | Msa0183090:intron | 25.0% |
| ! | TAAAATAAATTAGGCTCAAC+TGG | - | chr1_4:71889828-71889847 | None:intergenic | 25.0% |
| ! | TGATGTTTATTAAATAGTGG+TGG | + | chr1_4:71889928-71889947 | Msa0183090:intron | 25.0% |
| ! | TATACTATGTTGATATTTGC+AGG | + | chr1_4:71890152-71890171 | Msa0183090:intron | 25.0% |
| !!! | ACACTTTGTTATTTCTATCA+AGG | + | chr1_4:71890221-71890240 | Msa0183090:CDS | 25.0% |
| !!! | AGCTTTAAAAAACAAGAAAC+TGG | - | chr1_4:71890273-71890292 | None:intergenic | 25.0% |
| ! | ACTTCAATAACAATAAACCA+TGG | + | chr1_4:71890344-71890363 | Msa0183090:intron | 25.0% |
| ! | CTTCAATAACAATAAACCAT+GGG | + | chr1_4:71890345-71890364 | Msa0183090:intron | 25.0% |
| !! | TTTTGACCTTATAACTTCAT+TGG | + | chr1_4:71890409-71890428 | Msa0183090:intron | 25.0% |
| ! | ATCTATCCAATGAAGTTATA+AGG | - | chr1_4:71890418-71890437 | None:intergenic | 25.0% |
| !! | ATTCATTCACCATTTTACAA+AGG | - | chr1_4:71890455-71890474 | None:intergenic | 25.0% |
| !! | CATGTTTTCTCAAAATATAG+AGG | - | chr1_4:71890748-71890767 | None:intergenic | 25.0% |
| ! | GATAAAAAAAACTCCTAAGT+TGG | - | chr1_4:71890784-71890803 | None:intergenic | 25.0% |
| !! | ACTTATGTTATATTTGCTGA+TGG | + | chr1_4:71890868-71890887 | Msa0183090:three_prime_UTR | 25.0% |
| ! | AGTTATACAACATGCATATA+GGG | - | chr1_4:71890979-71890998 | None:intergenic | 25.0% |
| TTGTTTCGTTGATATTGTAC+AGG | + | chr1_4:71888021-71888040 | Msa0183090:intron | 30.0% | |
| CTAAGACAGAGTATAGAATT+TGG | + | chr1_4:71888680-71888699 | Msa0183090:CDS | 30.0% | |
| !! | TTGGTTTTTATCTAGAAACC+TGG | + | chr1_4:71888829-71888848 | Msa0183090:intron | 30.0% |
| ! | CAAGTTGAACTAATACTTAC+AGG | - | chr1_4:71888922-71888941 | None:intergenic | 30.0% |
| CTGTAAGTATTAGTTCAACT+TGG | + | chr1_4:71888920-71888939 | Msa0183090:intron | 30.0% | |
| TATAACATTAGTACGCTTCT+TGG | - | chr1_4:71889086-71889105 | None:intergenic | 30.0% | |
| TGTCTAGCATCTTCAATAAT+TGG | - | chr1_4:71889109-71889128 | None:intergenic | 30.0% | |
| TGCATTAGTAGAAAAGTGAA+TGG | - | chr1_4:71889272-71889291 | None:intergenic | 30.0% | |
| !!! | TGTTTTGGTTACTACAACAT+CGG | + | chr1_4:71889403-71889422 | Msa0183090:intron | 30.0% |
| AAATATGTGCATCAGAATCT+CGG | - | chr1_4:71889483-71889502 | None:intergenic | 30.0% | |
| ! | AGATTCTGATGCACATATTT+TGG | + | chr1_4:71889483-71889502 | Msa0183090:intron | 30.0% |
| AATGTTTAAGAACAGGATTG+GGG | + | chr1_4:71889750-71889769 | Msa0183090:intron | 30.0% | |
| !!! | AAAATGATTTTGAGACTGCA+AGG | - | chr1_4:71889963-71889982 | None:intergenic | 30.0% |
| ! | TGCAGTCTCAAAATCATTTT+TGG | + | chr1_4:71889963-71889982 | Msa0183090:intron | 30.0% |
| CAAGGATATAATGCAAGATA+CGG | - | chr1_4:71889998-71890017 | None:intergenic | 30.0% | |
| AGATTGCAAATCAACAATCA+AGG | - | chr1_4:71890016-71890035 | None:intergenic | 30.0% | |
| !! | TTGATTGTTGATTTGCAATC+TGG | + | chr1_4:71890015-71890034 | Msa0183090:intron | 30.0% |
| ! | TATTTGCAGGCAAGAATTTT+AGG | + | chr1_4:71890165-71890184 | Msa0183090:intron | 30.0% |
| CTTACTTTCTATAGGAATCT+TGG | + | chr1_4:71890291-71890310 | Msa0183090:intron | 30.0% | |
| GAAGTTATAAGGTCAAAATG+AGG | - | chr1_4:71890407-71890426 | None:intergenic | 30.0% | |
| ! | CCATTTTACAAAGGTTTGAA+GGG | - | chr1_4:71890446-71890465 | None:intergenic | 30.0% |
| ! | ACCATTTTACAAAGGTTTGA+AGG | - | chr1_4:71890447-71890466 | None:intergenic | 30.0% |
| AACTGTGGAATCAATACAAT+TGG | - | chr1_4:71890572-71890591 | None:intergenic | 30.0% | |
| GTTATACAACATGCATATAG+GGG | - | chr1_4:71890978-71890997 | None:intergenic | 30.0% | |
| CAGTTATACAACATGCATAT+AGG | - | chr1_4:71890980-71890999 | None:intergenic | 30.0% | |
| AACTCTAATTCGAACAAGGA+TGG | - | chr1_4:71887896-71887915 | None:intergenic | 35.0% | |
| AAAATACCCTCATGTCTATG+GGG | - | chr1_4:71888267-71888286 | None:intergenic | 35.0% | |
| GAAAATACCCTCATGTCTAT+GGG | - | chr1_4:71888268-71888287 | None:intergenic | 35.0% | |
| TGAAAATACCCTCATGTCTA+TGG | - | chr1_4:71888269-71888288 | None:intergenic | 35.0% | |
| !!! | TGAGGGTATTTTCATTGCTA+AGG | + | chr1_4:71888275-71888294 | Msa0183090:CDS | 35.0% |
| !!! | GAGGGTATTTTCATTGCTAA+GGG | + | chr1_4:71888276-71888295 | Msa0183090:CDS | 35.0% |
| AAGCTGTTTACAATGAGAAG+AGG | + | chr1_4:71888340-71888359 | Msa0183090:CDS | 35.0% | |
| AGCTGTTTACAATGAGAAGA+GGG | + | chr1_4:71888341-71888360 | Msa0183090:CDS | 35.0% | |
| ATTCAAAGCACAAACATCCA+AGG | - | chr1_4:71888394-71888413 | None:intergenic | 35.0% | |
| ! | GACATATTTTCTGCAGAATG+AGG | + | chr1_4:71888651-71888670 | Msa0183090:intron | 35.0% |
| ! | TATTTTCTGCAGAATGAGGA+TGG | + | chr1_4:71888655-71888674 | Msa0183090:intron | 35.0% |
| TCTCATGTGTCTGATATTGT+TGG | + | chr1_4:71888895-71888914 | Msa0183090:CDS | 35.0% | |
| CATGTTCTGTTTATGTAGAC+TGG | + | chr1_4:71889004-71889023 | Msa0183090:intron | 35.0% | |
| AAATTAAACCACACCTGATC+AGG | - | chr1_4:71889193-71889212 | None:intergenic | 35.0% | |
| !! | ACTGATTTGATGTGTCTTGA+TGG | + | chr1_4:71889331-71889350 | Msa0183090:intron | 35.0% |
| ATCATCCAAGAAGTCTTGAA+GGG | - | chr1_4:71889454-71889473 | None:intergenic | 35.0% | |
| AATATGTGCATCAGAATCTC+GGG | - | chr1_4:71889482-71889501 | None:intergenic | 35.0% | |
| ATTGATGTGCATCAGAATCT+CGG | - | chr1_4:71889696-71889715 | None:intergenic | 35.0% | |
| ATGTTTAAGAACAGGATTGG+GGG | + | chr1_4:71889751-71889770 | Msa0183090:intron | 35.0% | |
| !! | TAATGACTTGTTTAGGCACA+TGG | + | chr1_4:71889777-71889796 | Msa0183090:intron | 35.0% |
| TAGGCTCAACTGGAAAAATA+GGG | - | chr1_4:71889818-71889837 | None:intergenic | 35.0% | |
| TTAGGCTCAACTGGAAAAAT+AGG | - | chr1_4:71889819-71889838 | None:intergenic | 35.0% | |
| TGATGTTAACCAAATAGCAG+TGG | + | chr1_4:71890093-71890112 | Msa0183090:intron | 35.0% | |
| GATGTTAACCAAATAGCAGT+GGG | + | chr1_4:71890094-71890113 | Msa0183090:intron | 35.0% | |
| GCTTCATATTATCTCAAAGC+TGG | + | chr1_4:71890195-71890214 | Msa0183090:CDS | 35.0% | |
| TCATATTATCTCAAAGCTGG+AGG | + | chr1_4:71890198-71890217 | Msa0183090:CDS | 35.0% | |
| CAATAAACCATGGGAAAATG+AGG | + | chr1_4:71890354-71890373 | Msa0183090:intron | 35.0% | |
| ! | ATACTAACCTCATTTTCCCA+TGG | - | chr1_4:71890364-71890383 | None:intergenic | 35.0% |
| GGGAAAATGAGGTTAGTATT+TGG | + | chr1_4:71890365-71890384 | Msa0183090:intron | 35.0% | |
| CCCTTCAAACCTTTGTAAAA+TGG | + | chr1_4:71890443-71890462 | Msa0183090:intron | 35.0% | |
| AGCTGATCAATTTAAGCCAA+TGG | + | chr1_4:71890633-71890652 | Msa0183090:CDS | 35.0% | |
| !!! | TCGGCATCTTTTTTCTTCTT+GGG | - | chr1_4:71890721-71890740 | None:intergenic | 35.0% |
| CTCAAAATATAGAGGCTACT+CGG | - | chr1_4:71890740-71890759 | None:intergenic | 35.0% | |
| TTGTTGAGAACGGCTACAAA+GGG | - | chr1_4:71887816-71887835 | None:intergenic | 40.0% | |
| TTTGTTGAGAACGGCTACAA+AGG | - | chr1_4:71887817-71887836 | None:intergenic | 40.0% | |
| !! | TGCGAAGAGTTTGTTGAGAA+CGG | - | chr1_4:71887826-71887845 | None:intergenic | 40.0% |
| TCTTCGCAATCTCTCTACAA+TGG | + | chr1_4:71887838-71887857 | Msa0183090:exon | 40.0% | |
| GTCACTAAGAATCTTGTTCC+TGG | + | chr1_4:71888315-71888334 | Msa0183090:CDS | 40.0% | |
| TCATTGTAAACAGCTTCTCC+AGG | - | chr1_4:71888336-71888355 | None:intergenic | 40.0% | |
| TGAGAAAGGAAATACCTGCA+CGG | - | chr1_4:71888370-71888389 | None:intergenic | 40.0% | |
| GGTATTTCCTTTCTCATCCT+TGG | + | chr1_4:71888374-71888393 | Msa0183090:intron | 40.0% | |
| CAAACATCCAAGGATGAGAA+AGG | - | chr1_4:71888384-71888403 | None:intergenic | 40.0% | |
| ATATATTGTCGACACCACCA+AGG | - | chr1_4:71888738-71888757 | None:intergenic | 40.0% | |
| !! | TTGGTGGTGTCGACAATATA+TGG | + | chr1_4:71888737-71888756 | Msa0183090:CDS | 40.0% |
| TAGAATTCTCCCATCGAAGT+GGG | + | chr1_4:71889041-71889060 | Msa0183090:CDS | 40.0% | |
| TCATCCAAGAAGTCTTGAAG+GGG | - | chr1_4:71889453-71889472 | None:intergenic | 40.0% | |
| CATCATCCAAGAAGTCTTGA+AGG | - | chr1_4:71889455-71889474 | None:intergenic | 40.0% | |
| AGTGCATGTGATGAGTTACT+CGG | + | chr1_4:71889637-71889656 | Msa0183090:intron | 40.0% | |
| ATCATCCAAGAAGTCTTGCA+GGG | - | chr1_4:71889667-71889686 | None:intergenic | 40.0% | |
| TTGATGTGCATCAGAATCTC+GGG | - | chr1_4:71889695-71889714 | None:intergenic | 40.0% | |
| ACACTGACACGTAGAATACA+TGG | - | chr1_4:71890128-71890147 | None:intergenic | 40.0% | |
| TGTCAATGTTGATGCTTGCT+TGG | + | chr1_4:71890477-71890496 | Msa0183090:intron | 40.0% | |
| TGACTCTTGAACCATTTGAG+AGG | + | chr1_4:71890662-71890681 | Msa0183090:CDS | 40.0% | |
| GACTCTTGAACCATTTGAGA+GGG | + | chr1_4:71890663-71890682 | Msa0183090:CDS | 40.0% | |
| !!! | CTCGGCATCTTTTTTCTTCT+TGG | - | chr1_4:71890722-71890741 | None:intergenic | 40.0% |
| TACCATTGTGTCACCAACTT+AGG | + | chr1_4:71890768-71890787 | Msa0183090:three_prime_UTR | 40.0% | |
| TGTGTTCTGTTACCTCGAAC+AGG | - | chr1_4:71887869-71887888 | None:intergenic | 45.0% | |
| !! | AGATAGAGGTACCCCTTTCA+AGG | + | chr1_4:71888137-71888156 | Msa0183090:CDS | 45.0% |
| TGTTGAACCCCATAGACATG+AGG | + | chr1_4:71888257-71888276 | Msa0183090:CDS | 45.0% | |
| GTTGAACCCCATAGACATGA+GGG | + | chr1_4:71888258-71888277 | Msa0183090:CDS | 45.0% | |
| ! | GAACCCTTTCCGTTCTAAGT+TGG | + | chr1_4:71888702-71888721 | Msa0183090:CDS | 45.0% |
| CTGCCAACTTAGAACGGAAA+GGG | - | chr1_4:71888708-71888727 | None:intergenic | 45.0% | |
| GTAGAATTCTCCCATCGAAG+TGG | + | chr1_4:71889040-71889059 | Msa0183090:CDS | 45.0% | |
| TCCTGCCAAGTACAGAATGT+TGG | + | chr1_4:71889129-71889148 | Msa0183090:CDS | 45.0% | |
| ACCAACATTCTGTACTTGGC+AGG | - | chr1_4:71889133-71889152 | None:intergenic | 45.0% | |
| GCCAAGTACAGAATGTTGGT+TGG | + | chr1_4:71889133-71889152 | Msa0183090:CDS | 45.0% | |
| GCCAACCAACATTCTGTACT+TGG | - | chr1_4:71889137-71889156 | None:intergenic | 45.0% | |
| ! | GTACAGAATGTTGGTTGGCA+TGG | + | chr1_4:71889138-71889157 | Msa0183090:CDS | 45.0% |
| GGTGCATGTGATGAGTTACT+CGG | + | chr1_4:71889424-71889443 | Msa0183090:intron | 45.0% | |
| GATTCCCCTTCAAGACTTCT+TGG | + | chr1_4:71889446-71889465 | Msa0183090:intron | 45.0% | |
| TCATCCAAGAAGTCTTGCAG+GGG | - | chr1_4:71889666-71889685 | None:intergenic | 45.0% | |
| CATCATCCAAGAAGTCTTGC+AGG | - | chr1_4:71889668-71889687 | None:intergenic | 45.0% | |
| !! | GGGGCAGTAATGACTTGTTT+AGG | + | chr1_4:71889770-71889789 | Msa0183090:intron | 45.0% |
| AGATTCGTCCCACTGCTATT+TGG | - | chr1_4:71890105-71890124 | None:intergenic | 45.0% | |
| TCAAGAGTCACTTGCTCCAT+TGG | - | chr1_4:71890652-71890671 | None:intergenic | 45.0% | |
| !! | CTCCTAAGTTGGTGACACAA+TGG | - | chr1_4:71890773-71890792 | None:intergenic | 45.0% |
| !!! | TAAATTTTAATTTTTTGTAT+TGG | + | chr1_4:71890514-71890533 | Msa0183090:intron | 5.0% |
| GTTCTGTTACCTCGAACAGG+AGG | - | chr1_4:71887866-71887885 | None:intergenic | 50.0% | |
| CGTTGATATTGTACAGGCCG+TGG | + | chr1_4:71888027-71888046 | Msa0183090:intron | 50.0% | |
| TGATATTGTACAGGCCGTGG+TGG | + | chr1_4:71888030-71888049 | Msa0183090:intron | 50.0% | |
| ATAGAGGAGGTAGAGGAGGT+GGG | + | chr1_4:71888088-71888107 | Msa0183090:CDS | 50.0% | |
| !! | GGAAGAGGTGGTGGAATGAA+GGG | + | chr1_4:71888219-71888238 | Msa0183090:CDS | 50.0% |
| TGGAATGAAGGGAGGAAGCA+AGG | + | chr1_4:71888230-71888249 | Msa0183090:CDS | 50.0% | |
| GCTGCCAACTTAGAACGGAA+AGG | - | chr1_4:71888709-71888728 | None:intergenic | 50.0% | |
| CAGCAGCTGCCAACTTAGAA+CGG | - | chr1_4:71888714-71888733 | None:intergenic | 50.0% | |
| AGGTAAAGGACTTTAGCGCC+AGG | - | chr1_4:71888850-71888869 | None:intergenic | 50.0% | |
| GGCGCTAAAGTCCTTTACCT+AGG | + | chr1_4:71888850-71888869 | Msa0183090:CDS | 50.0% | |
| CAGAAGCAGCTCCTAGGTAA+AGG | - | chr1_4:71888864-71888883 | None:intergenic | 50.0% | |
| CTTTACCTAGGAGCTGCTTC+TGG | + | chr1_4:71888862-71888881 | Msa0183090:CDS | 50.0% | |
| TTGTTCCAGAAGCAGCTCCT+AGG | - | chr1_4:71888870-71888889 | None:intergenic | 50.0% | |
| !! | TGGGCGTGACTTGGTCAATA+TGG | + | chr1_4:71889060-71889079 | Msa0183090:CDS | 50.0% |
| TGATGTTGCTCAGCCTGATC+AGG | + | chr1_4:71889177-71889196 | Msa0183090:CDS | 50.0% | |
| GATTCCCCTGCAAGACTTCT+TGG | + | chr1_4:71889659-71889678 | Msa0183090:intron | 50.0% | |
| TGATTCCACAGTTCCAGCTG+AGG | + | chr1_4:71890579-71890598 | Msa0183090:CDS | 50.0% | |
| CAAGCATGGTCCCTCTCAAA+TGG | - | chr1_4:71890676-71890695 | None:intergenic | 50.0% | |
| AGGGACCATGCTTGTGTTGT+TGG | + | chr1_4:71890682-71890701 | Msa0183090:CDS | 50.0% | |
| ! | GACCATGCTTGTGTTGTTGG+TGG | + | chr1_4:71890685-71890704 | Msa0183090:CDS | 50.0% |
| AGCCACCAACAACACAAGCA+TGG | - | chr1_4:71890690-71890709 | None:intergenic | 50.0% | |
| GCATATAGGGGTTAGACTCG+TGG | - | chr1_4:71890966-71890985 | None:intergenic | 50.0% | |
| ACAATGGCTCCTCCTGTTCG+AGG | + | chr1_4:71887854-71887873 | Msa0183090:exon | 55.0% | |
| TGGAGGGTTCAGAGGAGGAA+GGG | + | chr1_4:71888059-71888078 | Msa0183090:CDS | 55.0% | |
| GGTGGTGATAGAGGAGGTAG+AGG | + | chr1_4:71888081-71888100 | Msa0183090:CDS | 55.0% | |
| GGTGATAGAGGAGGTAGAGG+AGG | + | chr1_4:71888084-71888103 | Msa0183090:CDS | 55.0% | |
| GATAGAGGAGGTAGAGGAGG+TGG | + | chr1_4:71888087-71888106 | Msa0183090:CDS | 55.0% | |
| !!! | AGAGGTGGTTTTGGAGGACG+AGG | + | chr1_4:71888111-71888130 | Msa0183090:CDS | 55.0% |
| GGTACCCCTTTCAAGGCTAG+AGG | + | chr1_4:71888144-71888163 | Msa0183090:CDS | 55.0% | |
| ACCCCTTTCAAGGCTAGAGG+TGG | + | chr1_4:71888147-71888166 | Msa0183090:CDS | 55.0% | |
| !! | GCCACCTCTAGCCTTGAAAG+GGG | - | chr1_4:71888151-71888170 | None:intergenic | 55.0% |
| !! | CGCCACCTCTAGCCTTGAAA+GGG | - | chr1_4:71888152-71888171 | None:intergenic | 55.0% |
| CCTTTCAAGGCTAGAGGTGG+CGG | + | chr1_4:71888150-71888169 | Msa0183090:CDS | 55.0% | |
| !! | CGGAAGAGGTGGTGGAATGA+AGG | + | chr1_4:71888218-71888237 | Msa0183090:CDS | 55.0% |
| !! | AGAGGTGGTGGAATGAAGGG+AGG | + | chr1_4:71888222-71888241 | Msa0183090:CDS | 55.0% |
| TGAGAAGAGGGTTACCGTGC+AGG | + | chr1_4:71888353-71888372 | Msa0183090:CDS | 55.0% | |
| AAGTTGGCAGCTGCTGTCCT+TGG | + | chr1_4:71888718-71888737 | Msa0183090:CDS | 55.0% | |
| CAAGTCACGCCCACTTCGAT+GGG | - | chr1_4:71889053-71889072 | None:intergenic | 55.0% | |
| TTGCTCAGCCTGATCAGGTG+TGG | + | chr1_4:71889182-71889201 | Msa0183090:intron | 55.0% | |
| TACTGCCTCAGCTGGAACTG+TGG | - | chr1_4:71890587-71890606 | None:intergenic | 55.0% | |
| TGAGGCAGTATTCAGCGCTG+AGG | + | chr1_4:71890597-71890616 | Msa0183090:CDS | 55.0% | |
| TGTACAGGCCGTGGTGGTTC+TGG | + | chr1_4:71888036-71888055 | Msa0183090:intron | 60.0% | |
| ACCCTCCACCAGAACCACCA+CGG | - | chr1_4:71888047-71888066 | None:intergenic | 60.0% | |
| ! | GGTTCTGGTGGAGGGTTCAG+AGG | + | chr1_4:71888051-71888070 | Msa0183090:CDS | 60.0% |
| TCTGGTGGAGGGTTCAGAGG+AGG | + | chr1_4:71888054-71888073 | Msa0183090:CDS | 60.0% | |
| GTGGAGGGTTCAGAGGAGGA+AGG | + | chr1_4:71888058-71888077 | Msa0183090:CDS | 60.0% | |
| GGAGGGTTCAGAGGAGGAAG+GGG | + | chr1_4:71888060-71888079 | Msa0183090:CDS | 60.0% | |
| GGAGGAAGGGGTGGTGATAG+AGG | + | chr1_4:71888072-71888091 | Msa0183090:CDS | 60.0% | |
| GGAAGGGGTGGTGATAGAGG+AGG | + | chr1_4:71888075-71888094 | Msa0183090:CDS | 60.0% | |
| ! | GGAGGTGGGAGAGGTGGTTT+TGG | + | chr1_4:71888102-71888121 | Msa0183090:CDS | 60.0% |
| !!! | GGTGGGAGAGGTGGTTTTGG+AGG | + | chr1_4:71888105-71888124 | Msa0183090:CDS | 60.0% |
| !!! | GGTGGTTTTGGAGGACGAGG+AGG | + | chr1_4:71888114-71888133 | Msa0183090:CDS | 60.0% |
| GGAGGACGAGGAGGAGATAG+AGG | + | chr1_4:71888123-71888142 | Msa0183090:CDS | 60.0% | |
| !! | CCGCCACCTCTAGCCTTGAA+AGG | - | chr1_4:71888153-71888172 | None:intergenic | 60.0% |
| ! | AAGGCTAGAGGTGGCGGTAG+AGG | + | chr1_4:71888156-71888175 | Msa0183090:CDS | 60.0% |
| TTGGCAGCTGCTGTCCTTGG+TGG | + | chr1_4:71888721-71888740 | Msa0183090:CDS | 60.0% | |
| CCAAGTCACGCCCACTTCGA+TGG | - | chr1_4:71889054-71889073 | None:intergenic | 60.0% | |
| CCATCGAAGTGGGCGTGACT+TGG | + | chr1_4:71889051-71889070 | Msa0183090:CDS | 60.0% | |
| GCGCTGAATACTGCCTCAGC+TGG | - | chr1_4:71890595-71890614 | None:intergenic | 60.0% | |
| !! | ACAGGCCGTGGTGGTTCTGG+TGG | + | chr1_4:71888039-71888058 | Msa0183090:intron | 65.0% |
| !! | GCCGTGGTGGTTCTGGTGGA+GGG | + | chr1_4:71888043-71888062 | Msa0183090:CDS | 65.0% |
| GGGTTCAGAGGAGGAAGGGG+TGG | + | chr1_4:71888063-71888082 | Msa0183090:CDS | 65.0% | |
| GGAGGTAGAGGAGGTGGGAG+AGG | + | chr1_4:71888093-71888112 | Msa0183090:CDS | 65.0% | |
| GGTAGAGGAGGTGGGAGAGG+TGG | + | chr1_4:71888096-71888115 | Msa0183090:CDS | 65.0% | |
| ! | GCTAGAGGTGGCGGTAGAGG+TGG | + | chr1_4:71888159-71888178 | Msa0183090:CDS | 65.0% |
| ! | AGAGGTGGCGGTAGAGGTGG+AGG | + | chr1_4:71888162-71888181 | Msa0183090:CDS | 65.0% |
| GGTAGAGGTGGAGGAGGCAG+AGG | + | chr1_4:71888171-71888190 | Msa0183090:CDS | 65.0% | |
| AGAGGTGGAGGAGGCAGAGG+AGG | + | chr1_4:71888174-71888193 | Msa0183090:CDS | 65.0% | |
| CACCACCTCTTCCGCCACCA+CGG | - | chr1_4:71888212-71888231 | None:intergenic | 65.0% | |
| !! | GGCCGTGGTGGTTCTGGTGG+AGG | + | chr1_4:71888042-71888061 | Msa0183090:intron | 70.0% |
| ! | GGTGGCGGTAGAGGTGGAGG+AGG | + | chr1_4:71888165-71888184 | Msa0183090:CDS | 70.0% |
| GGAGGAGGCAGAGGAGGACG+TGG | + | chr1_4:71888180-71888199 | Msa0183090:CDS | 70.0% | |
| GGAGGCAGAGGAGGACGTGG+AGG | + | chr1_4:71888183-71888202 | Msa0183090:CDS | 70.0% | |
| GGCAGAGGAGGACGTGGAGG+AGG | + | chr1_4:71888186-71888205 | Msa0183090:CDS | 70.0% | |
| !! | CGTGGTGGCGGAAGAGGTGG+TGG | + | chr1_4:71888210-71888229 | Msa0183090:CDS | 70.0% |
| GGAGGACGTGGAGGAGGCCG+TGG | + | chr1_4:71888192-71888211 | Msa0183090:CDS | 75.0% | |
| GGACGTGGAGGAGGCCGTGG+TGG | + | chr1_4:71888195-71888214 | Msa0183090:CDS | 75.0% | |
| CGTGGAGGAGGCCGTGGTGG+CGG | + | chr1_4:71888198-71888217 | Msa0183090:CDS | 75.0% | |
| !! | GGAGGCCGTGGTGGCGGAAG+AGG | + | chr1_4:71888204-71888223 | Msa0183090:CDS | 75.0% |
| !! | GGCCGTGGTGGCGGAAGAGG+TGG | + | chr1_4:71888207-71888226 | Msa0183090:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 71887771 | 71891007 | 71887771 | ID=Msa0183090;Name=Msa0183090 |
| chr1_4 | mRNA | 71887771 | 71891007 | 71887771 | ID=Msa0183090-mRNA-1;Parent=Msa0183090;Name=Msa0183090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=86|1|1|1|1|1|7|263|315 |
| chr1_4 | exon | 71887771 | 71887875 | 71887771 | ID=Msa0183090-mRNA-1:exon:24185;Parent=Msa0183090-mRNA-1 |
| chr1_4 | exon | 71888043 | 71888374 | 71888043 | ID=Msa0183090-mRNA-1:exon:24186;Parent=Msa0183090-mRNA-1 |
| chr1_4 | exon | 71888667 | 71888762 | 71888667 | ID=Msa0183090-mRNA-1:exon:24187;Parent=Msa0183090-mRNA-1 |
| chr1_4 | exon | 71888844 | 71888921 | 71888844 | ID=Msa0183090-mRNA-1:exon:24188;Parent=Msa0183090-mRNA-1 |
| chr1_4 | exon | 71889022 | 71889198 | 71889022 | ID=Msa0183090-mRNA-1:exon:24189;Parent=Msa0183090-mRNA-1 |
| chr1_4 | exon | 71890174 | 71890242 | 71890174 | ID=Msa0183090-mRNA-1:exon:24190;Parent=Msa0183090-mRNA-1 |
| chr1_4 | exon | 71890568 | 71891007 | 71890568 | ID=Msa0183090-mRNA-1:exon:24191;Parent=Msa0183090-mRNA-1 |
| chr1_4 | five_prime_UTR | 71887771 | 71887856 | 71887771 | ID=Msa0183090-mRNA-1:five_prime_utr;Parent=Msa0183090-mRNA-1 |
| chr1_4 | CDS | 71887857 | 71887875 | 71887857 | ID=Msa0183090-mRNA-1:cds;Parent=Msa0183090-mRNA-1 |
| chr1_4 | CDS | 71888043 | 71888374 | 71888043 | ID=Msa0183090-mRNA-1:cds;Parent=Msa0183090-mRNA-1 |
| chr1_4 | CDS | 71888667 | 71888762 | 71888667 | ID=Msa0183090-mRNA-1:cds;Parent=Msa0183090-mRNA-1 |
| chr1_4 | CDS | 71888844 | 71888921 | 71888844 | ID=Msa0183090-mRNA-1:cds;Parent=Msa0183090-mRNA-1 |
| chr1_4 | CDS | 71889022 | 71889198 | 71889022 | ID=Msa0183090-mRNA-1:cds;Parent=Msa0183090-mRNA-1 |
| chr1_4 | CDS | 71890174 | 71890242 | 71890174 | ID=Msa0183090-mRNA-1:cds;Parent=Msa0183090-mRNA-1 |
| chr1_4 | CDS | 71890568 | 71890744 | 71890568 | ID=Msa0183090-mRNA-1:cds;Parent=Msa0183090-mRNA-1 |
| chr1_4 | three_prime_UTR | 71890745 | 71891007 | 71890745 | ID=Msa0183090-mRNA-1:three_prime_utr;Parent=Msa0183090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
