Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208290 | XP_004488534.1 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 8.35e-88 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208290 | sp|Q5XH16|NH2L1_XENLA | 81.250 | 128 | 24 | 0 | 1 | 128 | 1 | 128 | 1.09e-73 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208290 | A0A1S2XFE9 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 3.99e-88 | 261 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044990 | Msa0208290 | 0.801647 | 8.157631e-49 | -8.615850e-47 |
| Msa0208190 | Msa0208290 | 0.970460 | 1.189445e-131 | -8.615850e-47 |
| Msa0208290 | Msa0208320 | 0.976824 | 1.433858e-142 | -8.615850e-47 |
| Msa0208290 | Msa0396640 | -0.802232 | 6.187185e-49 | -8.615850e-47 |
| Msa0208290 | Msa0444170 | -0.804411 | 2.188338e-49 | -8.615850e-47 |
| Msa0208290 | Msa0501930 | -0.806155 | 9.437741e-50 | -8.615850e-47 |
| Msa0208290 | Msa0501940 | -0.806738 | 7.108229e-50 | -8.615850e-47 |
| Msa0208290 | Msa0516810 | 0.805117 | 1.558452e-49 | -8.615850e-47 |
| Msa0208290 | Msa0550420 | 0.826551 | 2.549633e-54 | -8.615850e-47 |
| Msa0208290 | Msa0951700 | 0.810048 | 1.398721e-50 | -8.615850e-47 |
| Msa0208290 | Msa1085420 | 0.824698 | 7.009015e-54 | -8.615850e-47 |
| Msa0208290 | Msa1211820 | 0.852135 | 5.630316e-61 | -8.615850e-47 |
| Msa0208290 | Msa1332230 | 0.845119 | 4.955265e-59 | -8.615850e-47 |
| Msa0208290 | Msa1433590 | 0.815861 | 7.442446e-52 | -8.615850e-47 |
| Msa0208290 | Msa1441220 | -0.826285 | 2.950823e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208290 | MtrunA17_Chr2g0307081 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 7.68e-92 | 261 |
| Msa0208290 | MtrunA17_Chr4g0063571 | 97.656 | 128 | 3 | 0 | 1 | 128 | 1 | 128 | 3.04e-89 | 254 |
| Msa0208290 | MtrunA17_Chr4g0061981 | 34.821 | 112 | 72 | 1 | 8 | 118 | 21 | 132 | 9.29e-17 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208290 | AT4G22380.1 | 93.750 | 128 | 8 | 0 | 1 | 128 | 1 | 128 | 2.87e-77 | 224 |
| Msa0208290 | AT5G20160.1 | 92.969 | 128 | 9 | 0 | 1 | 128 | 1 | 128 | 1.36e-76 | 223 |
| Msa0208290 | AT4G12600.1 | 91.406 | 128 | 11 | 0 | 1 | 128 | 1 | 128 | 2.73e-74 | 217 |
| Msa0208290 | AT5G20160.2 | 74.375 | 160 | 9 | 1 | 1 | 128 | 1 | 160 | 6.99e-70 | 207 |
| Msa0208290 | AT4G12600.2 | 56.284 | 183 | 25 | 2 | 1 | 128 | 1 | 183 | 1.83e-49 | 156 |
| Msa0208290 | AT5G20160.3 | 64.815 | 108 | 6 | 1 | 1 | 76 | 1 | 108 | 6.45e-31 | 107 |
| Msa0208290 | AT5G08180.2 | 36.641 | 131 | 74 | 1 | 5 | 126 | 21 | 151 | 3.66e-23 | 88.6 |
| Msa0208290 | AT5G08180.1 | 36.641 | 131 | 74 | 1 | 5 | 126 | 21 | 151 | 3.66e-23 | 88.6 |
Find 50 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTGTGTACACTATAAA+TGG | 0.179279 | 2_1:-42826597 | Msa0208290:three_prime_UTR |
| AGAGAAGAGGCTTAGGGTTT+TGG | 0.218136 | 2_1:+42830530 | None:intergenic |
| ATGGATTAATGTTATTCTAT+TGG | 0.230931 | 2_1:-42826578 | Msa0208290:three_prime_UTR |
| TCAGCCAAAGGGTAAGCTTT+TGG | 0.274630 | 2_1:+42830363 | None:intergenic |
| TAATTACAAGCAACTCAAAA+AGG | 0.282256 | 2_1:-42830295 | Msa0208290:CDS |
| TGGATTAATGTTATTCTATT+GGG | 0.287540 | 2_1:-42826577 | Msa0208290:three_prime_UTR |
| TTGATCTGAAAGATTGATTT+CGG | 0.342588 | 2_1:-42826788 | Msa0208290:exon |
| TCCTTTACTCGCTGAGGATA+AGG | 0.365424 | 2_1:-42830019 | Msa0208290:intron |
| AATCAAAAGCACACCTTCAT+TGG | 0.389057 | 2_1:+42830269 | None:intergenic |
| TGTAAGAAGAGAAGAGGCTT+AGG | 0.389455 | 2_1:+42830523 | None:intergenic |
| ACAACTTACGATAACGATAA+TGG | 0.396702 | 2_1:-42830337 | Msa0208290:CDS |
| AAAGATTGATTTCGGTATGA+TGG | 0.399664 | 2_1:-42826780 | Msa0208290:three_prime_UTR |
| TTTAAGTTGACTTCCCTCAT+TGG | 0.429117 | 2_1:+42826943 | None:intergenic |
| CATTTCTGAGTTTGTTGTGA+TGG | 0.445083 | 2_1:-42830079 | Msa0208290:CDS |
| GCACGGACACTCCTCGGATT+AGG | 0.460013 | 2_1:-42826448 | Msa0208290:three_prime_UTR |
| TTTGATGGGACAAATACATA+AGG | 0.470260 | 2_1:+42827025 | None:intergenic |
| ATATTTATATCCACTGTTTG+AGG | 0.472855 | 2_1:-42826663 | Msa0208290:three_prime_UTR |
| GTAAGAAGAGAAGAGGCTTA+GGG | 0.476331 | 2_1:+42830524 | None:intergenic |
| GAATCCAAAAGCTTACCCTT+TGG | 0.476923 | 2_1:-42830367 | Msa0208290:CDS |
| CGTCCAGTCAAAGCCTCAAA+AGG | 0.482572 | 2_1:+42826732 | None:intergenic |
| ATCTCAAATACAACAACTAA+AGG | 0.485983 | 2_1:-42826921 | Msa0208290:intron |
| AGAAGAAATGTGCGCGCAGT+AGG | 0.493285 | 2_1:+42830566 | None:intergenic |
| TCCTCGGATTAGGCGTGTCC+CGG | 0.509515 | 2_1:-42826438 | Msa0208290:three_prime_UTR |
| AAGATTGATTTCGGTATGAT+GGG | 0.511888 | 2_1:-42826779 | Msa0208290:three_prime_UTR |
| CACTTTCAATCCTCAAACAG+TGG | 0.519537 | 2_1:+42826653 | None:intergenic |
| CGCGCAGTAGGGTTTATAAG+AGG | 0.525807 | 2_1:+42830578 | None:intergenic |
| GTCACAGAACATGCAATCAC+TGG | 0.528661 | 2_1:+42826968 | None:intergenic |
| ACCTTATCCTCAGCGAGTAA+AGG | 0.534236 | 2_1:+42830018 | None:intergenic |
| CAGAACATGCAATCACTGGC+CGG | 0.535766 | 2_1:+42826972 | None:intergenic |
| GAGTTGTGTTCAACTCGAAA+AGG | 0.541959 | 2_1:-42826710 | Msa0208290:three_prime_UTR |
| GTCCCATCAAAACAAGCACT+TGG | 0.547834 | 2_1:-42827013 | Msa0208290:CDS |
| GATTAGGCGTGTCCCGGTGT+CGG | 0.552386 | 2_1:-42826432 | Msa0208290:three_prime_UTR |
| TCATCTTCCTTTACTCGCTG+AGG | 0.553114 | 2_1:-42830025 | Msa0208290:CDS |
| GACGAGCATGTGGTGTGACC+CGG | 0.557034 | 2_1:-42826991 | Msa0208290:CDS |
| TAAGTTGTGCATCAGCCAAA+GGG | 0.569151 | 2_1:+42830352 | None:intergenic |
| CACGGACATCGGACATGACA+CGG | 0.571607 | 2_1:+42826329 | None:intergenic |
| AGAACATGCAATCACTGGCC+GGG | 0.572135 | 2_1:+42826973 | None:intergenic |
| GAAGAAATGTGCGCGCAGTA+GGG | 0.573757 | 2_1:+42830567 | None:intergenic |
| ATCACATAATTATCCGACAC+CGG | 0.578399 | 2_1:+42826419 | None:intergenic |
| GTAAGTTGTGCATCAGCCAA+AGG | 0.580950 | 2_1:+42830351 | None:intergenic |
| ACGGATACGGACACGGACAT+CGG | 0.602411 | 2_1:+42826318 | None:intergenic |
| CAAGCACTTGGACGAGCATG+TGG | 0.613075 | 2_1:-42827001 | Msa0208290:CDS |
| ACATGACACGGACACTGACA+CGG | 0.628121 | 2_1:+42826341 | None:intergenic |
| ACCGGGACACGCCTAATCCG+AGG | 0.629910 | 2_1:+42826437 | None:intergenic |
| GATTGATGTAAGAAGAGAAG+AGG | 0.636011 | 2_1:+42830517 | None:intergenic |
| TGTTCTGTGACAACCAATGA+GGG | 0.643609 | 2_1:-42826956 | Msa0208290:CDS |
| TCACATAATTATCCGACACC+GGG | 0.643761 | 2_1:+42826420 | None:intergenic |
| AGATGAAGAAGAATCTCAAG+TGG | 0.658274 | 2_1:+42830042 | None:intergenic |
| ATGTTCTGTGACAACCAATG+AGG | 0.691643 | 2_1:-42826957 | Msa0208290:CDS |
| GCTACAAAGACACTTAACAG+AGG | 0.744755 | 2_1:-42830102 | Msa0208290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAAATAAAAAAAT+AGG | + | chr2_1:42826948-42826967 | None:intergenic | 0.0% |
| !!! | TTATTTTTTATTTTTTTTTA+TGG | - | chr2_1:42827050-42827069 | Msa0208290:intron | 0.0% |
| !!! | TATTTTTTATTTTTTTTTAT+GGG | - | chr2_1:42827051-42827070 | Msa0208290:intron | 0.0% |
| !! | AATAATTCAAAAAAATGAAT+AGG | + | chr2_1:42826462-42826481 | None:intergenic | 10.0% |
| !!! | TATTAAAATGATTTATGTTT+TGG | - | chr2_1:42827601-42827620 | Msa0208290:intron | 10.0% |
| !!! | ATATCAATTTTATATTACAA+TGG | - | chr2_1:42828724-42828743 | Msa0208290:intron | 10.0% |
| !!! | TATCAATTTTATATTACAAT+GGG | - | chr2_1:42828725-42828744 | Msa0208290:intron | 10.0% |
| !!! | ATTTTTATTTTCAGTTTCTA+TGG | - | chr2_1:42826691-42826710 | Msa0208290:three_prime_UTR | 15.0% |
| !!! | TAATTGAATTCTGATTATTT+TGG | - | chr2_1:42827539-42827558 | Msa0208290:intron | 15.0% |
| !! | TGTATTCTATTTAATTAGTT+TGG | - | chr2_1:42827801-42827820 | Msa0208290:intron | 15.0% |
| !!! | CATTGAATTTCTAATTTTTT+TGG | + | chr2_1:42828055-42828074 | None:intergenic | 15.0% |
| !! | ACAAAAATAATCATAATTCA+AGG | - | chr2_1:42828180-42828199 | Msa0208290:intron | 15.0% |
| !!! | TATTTTAATTGAAAAATTGG+TGG | - | chr2_1:42828649-42828668 | Msa0208290:intron | 15.0% |
| !!! | TTTAATGGAAATTGTTTTAT+TGG | - | chr2_1:42829078-42829097 | Msa0208290:intron | 15.0% |
| !! | TATTAATTAGAGTTATAAAG+GGG | + | chr2_1:42829436-42829455 | None:intergenic | 15.0% |
| !! | GTATTAATTAGAGTTATAAA+GGG | + | chr2_1:42829437-42829456 | None:intergenic | 15.0% |
| !! | AGTATTAATTAGAGTTATAA+AGG | + | chr2_1:42829438-42829457 | None:intergenic | 15.0% |
| !! | TGAAAATTCAAATAATTACA+TGG | + | chr2_1:42829865-42829884 | None:intergenic | 15.0% |
| !! | TAAAAAGAAAAAGTGGTATT+AGG | - | chr2_1:42826715-42826734 | Msa0208290:three_prime_UTR | 20.0% |
| !! | AAAAAGAAAAAGTGGTATTA+GGG | - | chr2_1:42826716-42826735 | Msa0208290:three_prime_UTR | 20.0% |
| !! | TAAAGTCTAAACAAATCAAA+GGG | + | chr2_1:42827436-42827455 | None:intergenic | 20.0% |
| !! | TTAAAGTCTAAACAAATCAA+AGG | + | chr2_1:42827437-42827456 | None:intergenic | 20.0% |
| !!! | AAATTGTTTTATTGGTAAGT+TGG | - | chr2_1:42829086-42829105 | Msa0208290:intron | 20.0% |
| !! | ATAAGAAATTTGATAAGGTA+AGG | + | chr2_1:42829164-42829183 | None:intergenic | 20.0% |
| !! | ACTTGATAAGAAATTTGATA+AGG | + | chr2_1:42829169-42829188 | None:intergenic | 20.0% |
| !! | TTATCAAGTAATATGTGTAA+TGG | - | chr2_1:42829180-42829199 | Msa0208290:intron | 20.0% |
| !!! | GACACTTTTTTTTTGATAAA+TGG | + | chr2_1:42829398-42829417 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | + | chr2_1:42829473-42829492 | None:intergenic | 20.0% |
| !! | TTAATTTATGACAGTTGAAA+AGG | - | chr2_1:42829832-42829851 | Msa0208290:intron | 20.0% |
| !! | ATTATAACAGCTAATAAAGT+TGG | + | chr2_1:42830060-42830079 | None:intergenic | 20.0% |
| !!! | ATGGATTAATGTTATTCTAT+TGG | - | chr2_1:42830339-42830358 | Msa0208290:CDS | 20.0% |
| !! | TGGATTAATGTTATTCTATT+GGG | - | chr2_1:42830340-42830359 | Msa0208290:CDS | 20.0% |
| !!! | ATTTTTCACTCTTGTTATTT+TGG | - | chr2_1:42830390-42830409 | Msa0208290:intron | 20.0% |
| ! | CAAAAAAATGAATAGGAGAA+AGG | + | chr2_1:42826455-42826474 | None:intergenic | 25.0% |
| ! | GAATGAAGAAAATTGAGAAA+CGG | + | chr2_1:42826494-42826513 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTGTTGCAGAC+AGG | - | chr2_1:42826518-42826537 | Msa0208290:three_prime_UTR | 25.0% |
| ! | TAATTACAAGCAACTCAAAA+AGG | - | chr2_1:42826622-42826641 | Msa0208290:three_prime_UTR | 25.0% |
| ! | AATTACAAGCAACTCAAAAA+GGG | - | chr2_1:42826623-42826642 | Msa0208290:three_prime_UTR | 25.0% |
| ! | CTATGGTTAAAAAGAAAAAG+TGG | - | chr2_1:42826708-42826727 | Msa0208290:three_prime_UTR | 25.0% |
| ! | AATAGGCAATTAACATTTGT+TGG | + | chr2_1:42826931-42826950 | None:intergenic | 25.0% |
| !!! | AAATATGTCTGTGTTTTTGA+AGG | - | chr2_1:42826965-42826984 | Msa0208290:CDS | 25.0% |
| !!! | AATATGTCTGTGTTTTTGAA+GGG | - | chr2_1:42826966-42826985 | Msa0208290:CDS | 25.0% |
| !! | TCATTGAACTCTGATTATTT+TGG | - | chr2_1:42827654-42827673 | Msa0208290:intron | 25.0% |
| ! | TCCTGTATGAAAAAATAGTT+TGG | - | chr2_1:42827830-42827849 | Msa0208290:intron | 25.0% |
| !!! | TCCAAACTATTTTTTCATAC+AGG | + | chr2_1:42827834-42827853 | None:intergenic | 25.0% |
| ! | TAGTAAAGAGCTTAGAAATT+TGG | - | chr2_1:42828081-42828100 | Msa0208290:intron | 25.0% |
| ! | GATTATTAACCAGATTGTAA+TGG | + | chr2_1:42828119-42828138 | None:intergenic | 25.0% |
| ! | TAATATCATCAACACTAAAG+TGG | - | chr2_1:42828139-42828158 | Msa0208290:intron | 25.0% |
| ! | ATTTGAGGGATTTAAAAATG+AGG | - | chr2_1:42828792-42828811 | Msa0208290:intron | 25.0% |
| !!! | TTTTATTGGTAAGTTGGTAA+CGG | - | chr2_1:42829092-42829111 | Msa0208290:intron | 25.0% |
| !! | CTTTTTATCAAGTTTCTTTG+CGG | - | chr2_1:42829136-42829155 | Msa0208290:intron | 25.0% |
| ! | AGTATATGTATAAGACAATG+CGG | + | chr2_1:42829352-42829371 | None:intergenic | 25.0% |
| ! | ATAAATGGCTCAGTTATTAA+GGG | + | chr2_1:42829383-42829402 | None:intergenic | 25.0% |
| !!! | AAAGGGGAAAAAGTTATTTT+GGG | + | chr2_1:42829420-42829439 | None:intergenic | 25.0% |
| !! | TAAAGGGGAAAAAGTTATTT+TGG | + | chr2_1:42829421-42829440 | None:intergenic | 25.0% |
| ! | CAAAGTGGAATATATTGAAT+TGG | + | chr2_1:42829474-42829493 | None:intergenic | 25.0% |
| ! | AAATAAATGAGAGAGAAAAG+TGG | + | chr2_1:42829526-42829545 | None:intergenic | 25.0% |
| ! | ATATGTGTGAAATGAGAAAA+TGG | - | chr2_1:42829560-42829579 | Msa0208290:intron | 25.0% |
| !!! | TCCATGTCTTTTTAAAATTG+TGG | - | chr2_1:42829617-42829636 | Msa0208290:intron | 25.0% |
| ! | GAAAAACTTTAGATTTGTCT+TGG | + | chr2_1:42829678-42829697 | None:intergenic | 25.0% |
| !! | ATTTGGCATATATTGGTAAT+AGG | + | chr2_1:42829737-42829756 | None:intergenic | 25.0% |
| ! | TTTCTATTCATTCATGTTCT+TGG | - | chr2_1:42829805-42829824 | Msa0208290:intron | 25.0% |
| ! | ATCTCAAATACAACAACTAA+AGG | - | chr2_1:42829996-42830015 | Msa0208290:intron | 25.0% |
| ! | GAATAATATCAAGCAAAACA+TGG | + | chr2_1:42830028-42830047 | None:intergenic | 25.0% |
| !! | TTGATCTGAAAGATTGATTT+CGG | - | chr2_1:42830129-42830148 | Msa0208290:intron | 25.0% |
| ! | ATATTTATATCCACTGTTTG+AGG | - | chr2_1:42830254-42830273 | Msa0208290:intron | 25.0% |
| ! | AAACTTGTGTACACTATAAA+TGG | - | chr2_1:42830320-42830339 | Msa0208290:CDS | 25.0% |
| !! | TGTATTATTCTCTTTTAGCA+CGG | - | chr2_1:42830452-42830471 | Msa0208290:intron | 25.0% |
| ACAACTTACGATAACGATAA+TGG | - | chr2_1:42826580-42826599 | Msa0208290:three_prime_UTR | 30.0% | |
| AATGTGGATAGAGATTTAGA+AGG | - | chr2_1:42827177-42827196 | Msa0208290:intron | 30.0% | |
| !! | TAGAAAGTATTTATGAGCCT+GGG | - | chr2_1:42827200-42827219 | Msa0208290:intron | 30.0% |
| TAACGTAGACATAATCACTA+TGG | - | chr2_1:42827454-42827473 | Msa0208290:intron | 30.0% | |
| ATACAAACAAAACAGACCAA+AGG | - | chr2_1:42827889-42827908 | Msa0208290:intron | 30.0% | |
| TACAAACAAAACAGACCAAA+GGG | - | chr2_1:42827890-42827909 | Msa0208290:intron | 30.0% | |
| TTGTTCATATATAAGCCCTT+TGG | + | chr2_1:42827908-42827927 | None:intergenic | 30.0% | |
| TCATCTTATCAACACATTAG+TGG | - | chr2_1:42828014-42828033 | Msa0208290:intron | 30.0% | |
| AAAGTTATACAGTAACCCAA+AGG | + | chr2_1:42828684-42828703 | None:intergenic | 30.0% | |
| ! | TTTGGGTTACTGTATAACTT+TGG | - | chr2_1:42828683-42828702 | Msa0208290:intron | 30.0% |
| !! | ACTGTATAACTTTGGTTCTT+TGG | - | chr2_1:42828691-42828710 | Msa0208290:intron | 30.0% |
| !! | CTGTATAACTTTGGTTCTTT+GGG | - | chr2_1:42828692-42828711 | Msa0208290:intron | 30.0% |
| TAGTTTAGATTCGTTTCTTG+TGG | - | chr2_1:42828836-42828855 | Msa0208290:intron | 30.0% | |
| ! | AAGATTTCCTTTTCCTTTTG+TGG | + | chr2_1:42828928-42828947 | None:intergenic | 30.0% |
| GGCATTACATAATTTCAACA+TGG | + | chr2_1:42829028-42829047 | None:intergenic | 30.0% | |
| GGTTAAAGTAATATGTGTAG+TGG | - | chr2_1:42829113-42829132 | Msa0208290:intron | 30.0% | |
| GTGTGATCGTTGAAAATTTA+AGG | + | chr2_1:42829323-42829342 | None:intergenic | 30.0% | |
| GATAAATGGCTCAGTTATTA+AGG | + | chr2_1:42829384-42829403 | None:intergenic | 30.0% | |
| AAGTGCTCTTGATAAGTATT+TGG | + | chr2_1:42829499-42829518 | None:intergenic | 30.0% | |
| AGAAAATGGCTCAGTTAATT+TGG | - | chr2_1:42829574-42829593 | Msa0208290:intron | 30.0% | |
| GAAAATGGCTCAGTTAATTT+GGG | - | chr2_1:42829575-42829594 | Msa0208290:intron | 30.0% | |
| !! | GCCACAATTTTAAAAAGACA+TGG | + | chr2_1:42829621-42829640 | None:intergenic | 30.0% |
| !!! | GTCTTTTTAAAATTGTGGCT+AGG | - | chr2_1:42829622-42829641 | Msa0208290:intron | 30.0% |
| TCAGTCAATTTGGCATATAT+TGG | + | chr2_1:42829744-42829763 | None:intergenic | 30.0% | |
| TGAATGAATAGAAATAGCTG+TGG | + | chr2_1:42829799-42829818 | None:intergenic | 30.0% | |
| TTTGATGGGACAAATACATA+AGG | + | chr2_1:42829895-42829914 | None:intergenic | 30.0% | |
| TGTTATAATGCCAACACATT+TGG | - | chr2_1:42830071-42830090 | Msa0208290:CDS | 30.0% | |
| ! | AAAGATTGATTTCGGTATGA+TGG | - | chr2_1:42830137-42830156 | Msa0208290:intron | 30.0% |
| ! | AAGATTGATTTCGGTATGAT+GGG | - | chr2_1:42830138-42830157 | Msa0208290:intron | 30.0% |
| !!! | TTGTTATTTTGGATAAGTCG+AGG | - | chr2_1:42830401-42830420 | Msa0208290:intron | 30.0% |
| GATTGATGTAAGAAGAGAAG+AGG | + | chr2_1:42826403-42826422 | None:intergenic | 35.0% | |
| !! | GAAACAAGGTACCATTTTTG+GGG | + | chr2_1:42826433-42826452 | None:intergenic | 35.0% |
| !! | GGAAACAAGGTACCATTTTT+GGG | + | chr2_1:42826434-42826453 | None:intergenic | 35.0% |
| !! | AGGAAACAAGGTACCATTTT+TGG | + | chr2_1:42826435-42826454 | None:intergenic | 35.0% |
| TGAATAGGAGAAAGGAAACA+AGG | + | chr2_1:42826447-42826466 | None:intergenic | 35.0% | |
| ! | AATCAAAAGCACACCTTCAT+TGG | + | chr2_1:42826651-42826670 | None:intergenic | 35.0% |
| TGATTTATGACTAGTGCAAC+TGG | - | chr2_1:42826746-42826765 | Msa0208290:three_prime_UTR | 35.0% | |
| !! | CATTTCTGAGTTTGTTGTGA+TGG | - | chr2_1:42826838-42826857 | Msa0208290:intron | 35.0% |
| AGATGAAGAAGAATCTCAAG+TGG | + | chr2_1:42826878-42826897 | None:intergenic | 35.0% | |
| AGCAGCAATAACAGTAACAA+TGG | + | chr2_1:42827020-42827039 | None:intergenic | 35.0% | |
| !! | GTAGAAAGTATTTATGAGCC+TGG | - | chr2_1:42827199-42827218 | Msa0208290:intron | 35.0% |
| CAAAAAACCAACAGAAGGAA+TGG | + | chr2_1:42827233-42827252 | None:intergenic | 35.0% | |
| !!! | TCCTTCTGTTGGTTTTTTGA+AGG | - | chr2_1:42827234-42827253 | Msa0208290:intron | 35.0% |
| TCCTTCAAAAAACCAACAGA+AGG | + | chr2_1:42827238-42827257 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTTTGAAGGACATG+TGG | - | chr2_1:42827242-42827261 | Msa0208290:intron | 35.0% |
| !! | GAGTACTGAGCTTAGAAATT+TGG | + | chr2_1:42827627-42827646 | None:intergenic | 35.0% |
| AACGAAACAGACACAAGAAA+GGG | + | chr2_1:42827781-42827800 | None:intergenic | 35.0% | |
| AAACGAAACAGACACAAGAA+AGG | + | chr2_1:42827782-42827801 | None:intergenic | 35.0% | |
| AAAAACGAGCCATTACAATC+TGG | - | chr2_1:42828107-42828126 | Msa0208290:intron | 35.0% | |
| CGATGTCCATACAAATCAAA+AGG | - | chr2_1:42828224-42828243 | Msa0208290:intron | 35.0% | |
| !!! | TGGGAACCTTTTGATTTGTA+TGG | + | chr2_1:42828233-42828252 | None:intergenic | 35.0% |
| TTGTCATCTTGATGCTCTTT+GGG | + | chr2_1:42828252-42828271 | None:intergenic | 35.0% | |
| !! | AAAGAGCATCAAGATGACAA+GGG | - | chr2_1:42828252-42828271 | Msa0208290:intron | 35.0% |
| !! | TAGTTTACTGCATTTTGGTC+TGG | + | chr2_1:42828314-42828333 | None:intergenic | 35.0% |
| !! | CGTGTTAGTTTACTGCATTT+TGG | + | chr2_1:42828319-42828338 | None:intergenic | 35.0% |
| GCAAAAACCAATAGATGTAG+TGG | - | chr2_1:42828430-42828449 | Msa0208290:intron | 35.0% | |
| GTAGAAAGGATTTACGAGTT+TGG | + | chr2_1:42828463-42828482 | None:intergenic | 35.0% | |
| TGGAGATTCATAAGGTAGAA+AGG | + | chr2_1:42828477-42828496 | None:intergenic | 35.0% | |
| CCTCAAATGCATTAACATCA+GGG | + | chr2_1:42828780-42828799 | None:intergenic | 35.0% | |
| CCTGATGTTAATGCATTTGA+GGG | - | chr2_1:42828778-42828797 | Msa0208290:intron | 35.0% | |
| ! | CTTTGGGAGGGATTATTTAA+TGG | - | chr2_1:42829063-42829082 | Msa0208290:intron | 35.0% |
| !!! | TGGCAAAAAGATTGGTTTTG+GGG | + | chr2_1:42829262-42829281 | None:intergenic | 35.0% |
| !!! | CTGGCAAAAAGATTGGTTTT+GGG | + | chr2_1:42829263-42829282 | None:intergenic | 35.0% |
| !!! | ACTGGCAAAAAGATTGGTTT+TGG | + | chr2_1:42829264-42829283 | None:intergenic | 35.0% |
| !! | GATAAGTATTTGGTGCAAAG+TGG | + | chr2_1:42829489-42829508 | None:intergenic | 35.0% |
| ! | GGCATATATTGGTAATAGGT+CGG | + | chr2_1:42829733-42829752 | None:intergenic | 35.0% |
| AGTCTGGAAAAAACAGAACA+GGG | + | chr2_1:42829772-42829791 | None:intergenic | 35.0% | |
| TAGTCTGGAAAAAACAGAAC+AGG | + | chr2_1:42829773-42829792 | None:intergenic | 35.0% | |
| !! | TTTAAGTTGACTTCCCTCAT+TGG | + | chr2_1:42829977-42829996 | None:intergenic | 35.0% |
| TCAAGAATGTCCAAATGTGT+TGG | + | chr2_1:42830084-42830103 | None:intergenic | 35.0% | |
| TTTGGACATTCTTGATATGC+AGG | - | chr2_1:42830089-42830108 | Msa0208290:CDS | 35.0% | |
| ATCACATAATTATCCGACAC+CGG | + | chr2_1:42830501-42830520 | None:intergenic | 35.0% | |
| GTAAGAAGAGAAGAGGCTTA+GGG | + | chr2_1:42826396-42826415 | None:intergenic | 40.0% | |
| TGTAAGAAGAGAAGAGGCTT+AGG | + | chr2_1:42826397-42826416 | None:intergenic | 40.0% | |
| GAATCCAAAAGCTTACCCTT+TGG | - | chr2_1:42826550-42826569 | Msa0208290:three_prime_UTR | 40.0% | |
| TAAGTTGTGCATCAGCCAAA+GGG | + | chr2_1:42826568-42826587 | None:intergenic | 40.0% | |
| ACTAGTGCAACTGGATTGAA+TGG | - | chr2_1:42826755-42826774 | Msa0208290:three_prime_UTR | 40.0% | |
| GCTACAAAGACACTTAACAG+AGG | - | chr2_1:42826815-42826834 | Msa0208290:intron | 40.0% | |
| TTTATGGGGCAATGTTTGAG+AGG | - | chr2_1:42827066-42827085 | Msa0208290:intron | 40.0% | |
| !! | TAGTGATGGATCTTGTGAAG+TGG | - | chr2_1:42827124-42827143 | Msa0208290:intron | 40.0% |
| !!! | GTTTTTTGAAGGACATGTGG+AGG | - | chr2_1:42827245-42827264 | Msa0208290:intron | 40.0% |
| AATCACTGGTGGAACCAATA+TGG | - | chr2_1:42827273-42827292 | Msa0208290:intron | 40.0% | |
| TGGTGGAACCAATATGGTTT+GGG | - | chr2_1:42827279-42827298 | Msa0208290:intron | 40.0% | |
| GTCTGGTTAGATTATTGCGT+TGG | - | chr2_1:42827341-42827360 | Msa0208290:intron | 40.0% | |
| ! | TTATTGCGTTGGTCTGTTAG+TGG | - | chr2_1:42827352-42827371 | Msa0208290:intron | 40.0% |
| GGTAAACCATGGTTGAGAAT+TGG | - | chr2_1:42827373-42827392 | Msa0208290:intron | 40.0% | |
| CCTAAACCAATTCTCAACCA+TGG | + | chr2_1:42827382-42827401 | None:intergenic | 40.0% | |
| ! | CCATGGTTGAGAATTGGTTT+AGG | - | chr2_1:42827379-42827398 | Msa0208290:intron | 40.0% |
| CACTATGGAAAGACACTACT+AGG | - | chr2_1:42827469-42827488 | Msa0208290:intron | 40.0% | |
| CGTCTCATCAAACATGTAAG+TGG | + | chr2_1:42827577-42827596 | None:intergenic | 40.0% | |
| CTTGTCATCTTGATGCTCTT+TGG | + | chr2_1:42828253-42828272 | None:intergenic | 40.0% | |
| !! | CAAAGAGCATCAAGATGACA+AGG | - | chr2_1:42828251-42828270 | Msa0208290:intron | 40.0% |
| !!! | ATTGGTTTTTGCAAGACACG+TGG | + | chr2_1:42828422-42828441 | None:intergenic | 40.0% |
| ATCTCTGCCACTACATCTAT+TGG | + | chr2_1:42828440-42828459 | None:intergenic | 40.0% | |
| AAGGTGGATGGAGATTCATA+AGG | + | chr2_1:42828485-42828504 | None:intergenic | 40.0% | |
| ! | GAAAAAAAGGGTACATGGAG+AGG | + | chr2_1:42828513-42828532 | None:intergenic | 40.0% |
| ! | TAGCGGAAAAAAAGGGTACA+TGG | + | chr2_1:42828518-42828537 | None:intergenic | 40.0% |
| ! | GGTGAAGTAGCGGAAAAAAA+GGG | + | chr2_1:42828525-42828544 | None:intergenic | 40.0% |
| ! | TGGTGAAGTAGCGGAAAAAA+AGG | + | chr2_1:42828526-42828545 | None:intergenic | 40.0% |
| !! | AAGCTTGCTACTTCAACACT+GGG | + | chr2_1:42828565-42828584 | None:intergenic | 40.0% |
| !! | AAAGCTTGCTACTTCAACAC+TGG | + | chr2_1:42828566-42828585 | None:intergenic | 40.0% |
| CCCTGATGTTAATGCATTTG+AGG | - | chr2_1:42828777-42828796 | Msa0208290:intron | 40.0% | |
| CCCTCAAATGCATTAACATC+AGG | + | chr2_1:42828781-42828800 | None:intergenic | 40.0% | |
| GATTCGTTTCTTGTGGAAAG+TGG | - | chr2_1:42828843-42828862 | Msa0208290:intron | 40.0% | |
| TGTCGTGATTGCAAACATGT+TGG | + | chr2_1:42828877-42828896 | None:intergenic | 40.0% | |
| ATGTTTGCAATCACGACACA+TGG | - | chr2_1:42828879-42828898 | Msa0208290:intron | 40.0% | |
| TAGCGAACCACAAAAGGAAA+AGG | - | chr2_1:42828918-42828937 | Msa0208290:intron | 40.0% | |
| AACTCTAATGCATACCGCTT+GGG | + | chr2_1:42828977-42828996 | None:intergenic | 40.0% | |
| AAACTCTAATGCATACCGCT+TGG | + | chr2_1:42828978-42828997 | None:intergenic | 40.0% | |
| TTTCAACATGGCATACATGC+AGG | + | chr2_1:42829016-42829035 | None:intergenic | 40.0% | |
| CTTCCCACTTTGTGAACTTT+GGG | - | chr2_1:42829047-42829066 | Msa0208290:intron | 40.0% | |
| ! | ACCAATCTTTTTGCCAGTAG+CGG | - | chr2_1:42829266-42829285 | Msa0208290:intron | 40.0% |
| ATGGCTCAGTTATTAAGGGA+CGG | + | chr2_1:42829379-42829398 | None:intergenic | 40.0% | |
| ! | ATGGCTCAGTTAATTTGGGA+CGG | - | chr2_1:42829579-42829598 | Msa0208290:intron | 40.0% |
| CAGGGGAATATCAGTCAATT+TGG | + | chr2_1:42829754-42829773 | None:intergenic | 40.0% | |
| GTCTGGAAAAAACAGAACAG+GGG | + | chr2_1:42829771-42829790 | None:intergenic | 40.0% | |
| !!! | GTCCAAGTGCTTGTTTTGAT+GGG | + | chr2_1:42829909-42829928 | None:intergenic | 40.0% |
| ATGTTCTGTGACAACCAATG+AGG | - | chr2_1:42829960-42829979 | Msa0208290:intron | 40.0% | |
| TGTTCTGTGACAACCAATGA+GGG | - | chr2_1:42829961-42829980 | Msa0208290:intron | 40.0% | |
| GAGTTGTGTTCAACTCGAAA+AGG | - | chr2_1:42830207-42830226 | Msa0208290:intron | 40.0% | |
| CACTTTCAATCCTCAAACAG+TGG | + | chr2_1:42830267-42830286 | None:intergenic | 40.0% | |
| TCACATAATTATCCGACACC+GGG | + | chr2_1:42830500-42830519 | None:intergenic | 40.0% | |
| ! | AGAGAAGAGGCTTAGGGTTT+TGG | + | chr2_1:42826390-42826409 | None:intergenic | 45.0% |
| !! | ACAAGGTACCATTTTTGGGG+CGG | + | chr2_1:42826430-42826449 | None:intergenic | 45.0% |
| ! | TCAGCCAAAGGGTAAGCTTT+TGG | + | chr2_1:42826557-42826576 | None:intergenic | 45.0% |
| GTAAGTTGTGCATCAGCCAA+AGG | + | chr2_1:42826569-42826588 | None:intergenic | 45.0% | |
| !! | CTCAAAAAGGGTGCCAATGA+AGG | - | chr2_1:42826635-42826654 | Msa0208290:three_prime_UTR | 45.0% |
| TCATCTTCCTTTACTCGCTG+AGG | - | chr2_1:42826892-42826911 | Msa0208290:intron | 45.0% | |
| TCCTTTACTCGCTGAGGATA+AGG | - | chr2_1:42826898-42826917 | Msa0208290:intron | 45.0% | |
| ACCTTATCCTCAGCGAGTAA+AGG | + | chr2_1:42826902-42826921 | None:intergenic | 45.0% | |
| ! | TGATGGATCTTGTGAAGTGG+CGG | - | chr2_1:42827127-42827146 | Msa0208290:intron | 45.0% |
| ! | TTGTGAAGTGGCGGGAAAAA+GGG | - | chr2_1:42827136-42827155 | Msa0208290:intron | 45.0% |
| TCTCTTGCCATTCCTTCTGT+TGG | - | chr2_1:42827223-42827242 | Msa0208290:intron | 45.0% | |
| !! | TTTTGAAGGACATGTGGAGG+CGG | - | chr2_1:42827248-42827267 | Msa0208290:intron | 45.0% |
| CTGGTGGAACCAATATGGTT+TGG | - | chr2_1:42827278-42827297 | Msa0208290:intron | 45.0% | |
| ! | TGGAACCAATATGGTTTGGG+CGG | - | chr2_1:42827282-42827301 | Msa0208290:intron | 45.0% |
| TGTTACCGCCCAAACCATAT+TGG | + | chr2_1:42827290-42827309 | None:intergenic | 45.0% | |
| GTAGGAAGAAATTTGCACGC+TGG | - | chr2_1:42827319-42827338 | Msa0208290:intron | 45.0% | |
| AAGAAATTTGCACGCTGGTC+TGG | - | chr2_1:42827324-42827343 | Msa0208290:intron | 45.0% | |
| GGTCTGTTAGTGGTAAACCA+TGG | - | chr2_1:42827362-42827381 | Msa0208290:intron | 45.0% | |
| !! | AAAGAGCATCAAGAGGACAG+GGG | + | chr2_1:42827408-42827427 | None:intergenic | 45.0% |
| !! | CAAAGAGCATCAAGAGGACA+GGG | + | chr2_1:42827409-42827428 | None:intergenic | 45.0% |
| CTGTCCTCTTGATGCTCTTT+GGG | - | chr2_1:42827408-42827427 | Msa0208290:intron | 45.0% | |
| CTTGAATCAAGTCTCTGCCA+TGG | - | chr2_1:42828278-42828297 | Msa0208290:intron | 45.0% | |
| !! | ACTGCATTTTGGTCTGGTAG+TGG | + | chr2_1:42828308-42828327 | None:intergenic | 45.0% |
| ACATGGAGAGGATTGAAAGG+TGG | + | chr2_1:42828501-42828520 | None:intergenic | 45.0% | |
| GGTACATGGAGAGGATTGAA+AGG | + | chr2_1:42828504-42828523 | None:intergenic | 45.0% | |
| !! | AGCTTGCTACTTCAACACTG+GGG | + | chr2_1:42828564-42828583 | None:intergenic | 45.0% |
| ! | AGCTTTTCTCCTCTCAAACG+TGG | - | chr2_1:42828580-42828599 | Msa0208290:intron | 45.0% |
| TTGGTGGAGCTCTATACCTT+TGG | - | chr2_1:42828665-42828684 | Msa0208290:intron | 45.0% | |
| TGGTGGAGCTCTATACCTTT+GGG | - | chr2_1:42828666-42828685 | Msa0208290:intron | 45.0% | |
| TGATCACATGACTTCCCAAG+CGG | - | chr2_1:42828960-42828979 | Msa0208290:intron | 45.0% | |
| CCAAAGTTCACAAAGTGGGA+AGG | + | chr2_1:42829049-42829068 | None:intergenic | 45.0% | |
| CCTTCCCACTTTGTGAACTT+TGG | - | chr2_1:42829046-42829065 | Msa0208290:intron | 45.0% | |
| CCTCCCAAAGTTCACAAAGT+GGG | + | chr2_1:42829053-42829072 | None:intergenic | 45.0% | |
| ! | CCACTTTGTGAACTTTGGGA+GGG | - | chr2_1:42829051-42829070 | Msa0208290:intron | 45.0% |
| ACCGCTACTGGCAAAAAGAT+TGG | + | chr2_1:42829270-42829289 | None:intergenic | 45.0% | |
| TGGCTCAGTTATTAAGGGAC+GGG | + | chr2_1:42829378-42829397 | None:intergenic | 45.0% | |
| ! | CTCAGTTAATTTGGGACGGA+GGG | - | chr2_1:42829583-42829602 | Msa0208290:intron | 45.0% |
| TTGTGGCTAGGATTACTCTG+CGG | - | chr2_1:42829634-42829653 | Msa0208290:intron | 45.0% | |
| ! | TTGGTAATAGGTCGGATCTC+AGG | + | chr2_1:42829725-42829744 | None:intergenic | 45.0% |
| AAATAGCTGTGGCTGTAGTC+TGG | + | chr2_1:42829788-42829807 | None:intergenic | 45.0% | |
| GTCCCATCAAAACAAGCACT+TGG | - | chr2_1:42829904-42829923 | Msa0208290:intron | 45.0% | |
| !!! | CGTCCAAGTGCTTGTTTTGA+TGG | + | chr2_1:42829910-42829929 | None:intergenic | 45.0% |
| GTCACAGAACATGCAATCAC+TGG | + | chr2_1:42829952-42829971 | None:intergenic | 45.0% | |
| ! | TGCTGAATGCTCTCCTTTTG+AGG | - | chr2_1:42830172-42830191 | Msa0208290:intron | 45.0% |
| !!! | TCTCCTTTTGAGGCTTTGAC+TGG | - | chr2_1:42830182-42830201 | Msa0208290:intron | 45.0% |
| !! | AAAAATAAAAAATAAAACAA+AGG | + | chr2_1:42827045-42827064 | None:intergenic | 5.0% |
| !!! | ATTTTTTATTTTTTTTTATG+GGG | - | chr2_1:42827052-42827071 | Msa0208290:intron | 5.0% |
| !! | AAATAATAAAAAAAAAACAA+AGG | + | chr2_1:42828634-42828653 | None:intergenic | 5.0% |
| !!! | TATTATTTTAATTGAAAAAT+TGG | - | chr2_1:42828646-42828665 | Msa0208290:intron | 5.0% |
| CGCGCAGTAGGGTTTATAAG+AGG | + | chr2_1:42826342-42826361 | None:intergenic | 50.0% | |
| GAAGAAATGTGCGCGCAGTA+GGG | + | chr2_1:42826353-42826372 | None:intergenic | 50.0% | |
| AGAAGAAATGTGCGCGCAGT+AGG | + | chr2_1:42826354-42826373 | None:intergenic | 50.0% | |
| TGGGGCAATGTTTGAGAGGT+AGG | - | chr2_1:42827070-42827089 | Msa0208290:intron | 50.0% | |
| AAAGCGTGTTACCTCGACAC+TGG | - | chr2_1:42827096-42827115 | Msa0208290:intron | 50.0% | |
| AAGCGTGTTACCTCGACACT+GGG | - | chr2_1:42827097-42827116 | Msa0208290:intron | 50.0% | |
| GATGGATCTTGTGAAGTGGC+GGG | - | chr2_1:42827128-42827147 | Msa0208290:intron | 50.0% | |
| ! | CTTGTGAAGTGGCGGGAAAA+AGG | - | chr2_1:42827135-42827154 | Msa0208290:intron | 50.0% |
| CAGGGGAGAGGATTGAAATG+TGG | - | chr2_1:42827161-42827180 | Msa0208290:intron | 50.0% | |
| ATGTGGAGGCGGTTAATCAC+TGG | - | chr2_1:42827259-42827278 | Msa0208290:intron | 50.0% | |
| TTTGGGCGGTAACAGTGTCA+CGG | - | chr2_1:42827296-42827315 | Msa0208290:intron | 50.0% | |
| !! | CCAAAGAGCATCAAGAGGAC+AGG | + | chr2_1:42827410-42827429 | None:intergenic | 50.0% |
| CCTGTCCTCTTGATGCTCTT+TGG | - | chr2_1:42827407-42827426 | Msa0208290:intron | 50.0% | |
| !! | GGTCTGGTAGTGGTAAACCA+TGG | + | chr2_1:42828298-42828317 | None:intergenic | 50.0% |
| TTGGGCGGTGACAATGTCAA+GGG | + | chr2_1:42828367-42828386 | None:intergenic | 50.0% | |
| TTTGGGCGGTGACAATGTCA+AGG | + | chr2_1:42828368-42828387 | None:intergenic | 50.0% | |
| ! | TGGAACCAACATGGTTTGGG+CGG | + | chr2_1:42828382-42828401 | None:intergenic | 50.0% |
| CGGTGGAACCAACATGGTTT+GGG | + | chr2_1:42828385-42828404 | None:intergenic | 50.0% | |
| !! | CCAAACCATGTTGGTTCCAC+CGG | - | chr2_1:42828383-42828402 | Msa0208290:intron | 50.0% |
| ! | GGTTTTTGCAAGACACGTGG+CGG | + | chr2_1:42828419-42828438 | None:intergenic | 50.0% |
| GGAGAGGATTGAAAGGTGGA+TGG | + | chr2_1:42828497-42828516 | None:intergenic | 50.0% | |
| ! | TGGTGGATCTGGTGAAGTAG+CGG | + | chr2_1:42828535-42828554 | None:intergenic | 50.0% |
| CTACTTCAACACTGGGGTGA+TGG | + | chr2_1:42828558-42828577 | None:intergenic | 50.0% | |
| TGCGGTTAGCGAACCACAAA+AGG | - | chr2_1:42828912-42828931 | Msa0208290:intron | 50.0% | |
| CCCACTTTGTGAACTTTGGG+AGG | - | chr2_1:42829050-42829069 | Msa0208290:intron | 50.0% | |
| CCCTCCCAAAGTTCACAAAG+TGG | + | chr2_1:42829054-42829073 | None:intergenic | 50.0% | |
| TCACTAAGCTTCACCGCTAC+TGG | + | chr2_1:42829282-42829301 | None:intergenic | 50.0% | |
| CTCAGTTATTAAGGGACGGG+GGG | + | chr2_1:42829375-42829394 | None:intergenic | 50.0% | |
| GCTCAGTTATTAAGGGACGG+GGG | + | chr2_1:42829376-42829395 | None:intergenic | 50.0% | |
| GGCTCAGTTATTAAGGGACG+GGG | + | chr2_1:42829377-42829396 | None:intergenic | 50.0% | |
| ! | GCTCAGTTAATTTGGGACGG+AGG | - | chr2_1:42829582-42829601 | Msa0208290:intron | 50.0% |
| TCTGCGGTCAACTGTAAGCT+GGG | - | chr2_1:42829650-42829669 | Msa0208290:intron | 50.0% | |
| AGAACATGCAATCACTGGCC+GGG | + | chr2_1:42829947-42829966 | None:intergenic | 50.0% | |
| CAGAACATGCAATCACTGGC+CGG | + | chr2_1:42829948-42829967 | None:intergenic | 50.0% | |
| CGTCCAGTCAAAGCCTCAAA+AGG | + | chr2_1:42830188-42830207 | None:intergenic | 50.0% | |
| ! | CTTTTAGCACGGACACTCCT+CGG | - | chr2_1:42830463-42830482 | Msa0208290:intron | 50.0% |
| ACATGACACGGACACTGACA+CGG | + | chr2_1:42830579-42830598 | None:intergenic | 50.0% | |
| !! | GGCTTAGGGTTTTGGCGTGA+AGG | + | chr2_1:42826382-42826401 | None:intergenic | 55.0% |
| !!! | AGGTACCATTTTTGGGGCGG+CGG | + | chr2_1:42826427-42826446 | None:intergenic | 55.0% |
| GGGCGTGTCATGTGTGATTG+TGG | - | chr2_1:42826986-42827005 | Msa0208290:CDS | 55.0% | |
| AGCGTGTTACCTCGACACTG+GGG | - | chr2_1:42827098-42827117 | Msa0208290:intron | 55.0% | |
| TCACTATCACCCCAGTGTCG+AGG | + | chr2_1:42827110-42827129 | None:intergenic | 55.0% | |
| ! | CGACACTGGGGTGATAGTGA+TGG | - | chr2_1:42827110-42827129 | Msa0208290:intron | 55.0% |
| ! | AGTGGCGGGAAAAAGGGTAC+AGG | - | chr2_1:42827142-42827161 | Msa0208290:intron | 55.0% |
| ! | GTGGCGGGAAAAAGGGTACA+GGG | - | chr2_1:42827143-42827162 | Msa0208290:intron | 55.0% |
| ! | TGGCGGGAAAAAGGGTACAG+GGG | - | chr2_1:42827144-42827163 | Msa0208290:intron | 55.0% |
| ! | GGAAAAAGGGTACAGGGGAG+AGG | - | chr2_1:42827149-42827168 | Msa0208290:intron | 55.0% |
| GAAGGAATGGCAAGAGACCC+AGG | + | chr2_1:42827220-42827239 | None:intergenic | 55.0% | |
| TGGAGGCGGTTAATCACTGG+TGG | - | chr2_1:42827262-42827281 | Msa0208290:intron | 55.0% | |
| TTGGGCGGTAACAGTGTCAC+GGG | - | chr2_1:42827297-42827316 | Msa0208290:intron | 55.0% | |
| !! | GGTGCCCAAAGAGCATCAAG+AGG | + | chr2_1:42827415-42827434 | None:intergenic | 55.0% |
| TGTCACCGCCCAAACCATGT+TGG | - | chr2_1:42828374-42828393 | Msa0208290:intron | 55.0% | |
| CCGGTGGAACCAACATGGTT+TGG | + | chr2_1:42828386-42828405 | None:intergenic | 55.0% | |
| ! | CTTCAACACTGGGGTGATGG+TGG | + | chr2_1:42828555-42828574 | None:intergenic | 55.0% |
| CAACAAGGGCCACGTTTGAG+AGG | + | chr2_1:42828592-42828611 | None:intergenic | 55.0% | |
| AGCAGCAGCAGCAGCAACAA+GGG | + | chr2_1:42828606-42828625 | None:intergenic | 55.0% | |
| ACACATGGCTTCCCACTGTG+CGG | - | chr2_1:42828894-42828913 | Msa0208290:intron | 55.0% | |
| TGGTTCGCTAACCGCACAGT+GGG | + | chr2_1:42828908-42828927 | None:intergenic | 55.0% | |
| CTCTGCGGTCAACTGTAAGC+TGG | - | chr2_1:42829649-42829668 | Msa0208290:intron | 55.0% | |
| CAAGCACTTGGACGAGCATG+TGG | - | chr2_1:42829916-42829935 | Msa0208290:intron | 55.0% | |
| AATCGCCGCCGCCCCAAAAA+TGG | - | chr2_1:42826419-42826438 | Msa0208290:three_prime_UTR | 60.0% | |
| GCGGTAACAGTGTCACGGGT+AGG | - | chr2_1:42827301-42827320 | Msa0208290:intron | 60.0% | |
| !! | GAGCACCGGTGGAACCAACA+TGG | + | chr2_1:42828391-42828410 | None:intergenic | 60.0% |
| !! | TGGGGTGATGGTGGTGGATC+TGG | + | chr2_1:42828546-42828565 | None:intergenic | 60.0% |
| !! | CAACACTGGGGTGATGGTGG+TGG | + | chr2_1:42828552-42828571 | None:intergenic | 60.0% |
| CAGCAGCAGCAGCAGCAACA+AGG | + | chr2_1:42828607-42828626 | None:intergenic | 60.0% | |
| GTGGTTCGCTAACCGCACAG+TGG | + | chr2_1:42828909-42828928 | None:intergenic | 60.0% | |
| GACGAGCATGTGGTGTGACC+CGG | - | chr2_1:42829926-42829945 | Msa0208290:intron | 60.0% | |
| GCACGGACACTCCTCGGATT+AGG | - | chr2_1:42830469-42830488 | Msa0208290:intron | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | - | chr2_1:42830479-42830498 | Msa0208290:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr2_1:42830485-42830504 | Msa0208290:intron | 60.0% | |
| ACGTGGCGGCGATTGAGCAC+CGG | + | chr2_1:42828405-42828424 | None:intergenic | 65.0% | |
| ACCGGGACACGCCTAATCCG+AGG | + | chr2_1:42830483-42830502 | None:intergenic | 65.0% | |
| !! | TGGCGGCGATTGAGCACCGG+TGG | + | chr2_1:42828402-42828421 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 42826331 | 42830608 | 42826331 | ID=Msa0208290;Name=Msa0208290 |
| chr2_1 | mRNA | 42826331 | 42830608 | 42826331 | ID=Msa0208290-mRNA-1;Parent=Msa0208290;Name=Msa0208290-mRNA-1;_AED=0.16;_eAED=0.16;_QI=107|1|1|1|0.75|1|5|471|128 |
| chr2_1 | exon | 42826331 | 42826828 | 42826331 | ID=Msa0208290-mRNA-1:exon:12798;Parent=Msa0208290-mRNA-1 |
| chr2_1 | exon | 42826922 | 42827053 | 42826922 | ID=Msa0208290-mRNA-1:exon:12797;Parent=Msa0208290-mRNA-1 |
| chr2_1 | exon | 42830020 | 42830123 | 42830020 | ID=Msa0208290-mRNA-1:exon:12796;Parent=Msa0208290-mRNA-1 |
| chr2_1 | exon | 42830283 | 42830403 | 42830283 | ID=Msa0208290-mRNA-1:exon:12795;Parent=Msa0208290-mRNA-1 |
| chr2_1 | exon | 42830499 | 42830608 | 42830499 | ID=Msa0208290-mRNA-1:exon:12794;Parent=Msa0208290-mRNA-1 |
| chr2_1 | five_prime_UTR | 42830502 | 42830608 | 42830502 | ID=Msa0208290-mRNA-1:five_prime_utr;Parent=Msa0208290-mRNA-1 |
| chr2_1 | CDS | 42830499 | 42830501 | 42830499 | ID=Msa0208290-mRNA-1:cds;Parent=Msa0208290-mRNA-1 |
| chr2_1 | CDS | 42830283 | 42830403 | 42830283 | ID=Msa0208290-mRNA-1:cds;Parent=Msa0208290-mRNA-1 |
| chr2_1 | CDS | 42830020 | 42830123 | 42830020 | ID=Msa0208290-mRNA-1:cds;Parent=Msa0208290-mRNA-1 |
| chr2_1 | CDS | 42826922 | 42827053 | 42826922 | ID=Msa0208290-mRNA-1:cds;Parent=Msa0208290-mRNA-1 |
| chr2_1 | CDS | 42826802 | 42826828 | 42826802 | ID=Msa0208290-mRNA-1:cds;Parent=Msa0208290-mRNA-1 |
| chr2_1 | three_prime_UTR | 42826331 | 42826801 | 42826331 | ID=Msa0208290-mRNA-1:three_prime_utr;Parent=Msa0208290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
