Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208190 | XP_004488534.1 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 8.35e-88 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208190 | sp|Q5XH16|NH2L1_XENLA | 81.250 | 128 | 24 | 0 | 1 | 128 | 1 | 128 | 1.09e-73 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208190 | A0A1S2XFE9 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 3.99e-88 | 261 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208190 | Msa0208290 | 0.970460 | 1.189445e-131 | -8.615850e-47 |
| Msa0208190 | Msa0208320 | 0.998147 | 2.664278e-257 | -8.615850e-47 |
| Msa0208190 | Msa0350070 | -0.810136 | 1.339450e-50 | -8.615850e-47 |
| Msa0208190 | Msa0396640 | -0.811427 | 7.041122e-51 | -8.615850e-47 |
| Msa0208190 | Msa0444170 | -0.819113 | 1.377228e-52 | -8.615850e-47 |
| Msa0208190 | Msa0491730 | -0.804966 | 1.676329e-49 | -8.615850e-47 |
| Msa0208190 | Msa0951700 | 0.807648 | 4.561190e-50 | -8.615850e-47 |
| Msa0208190 | Msa1211820 | 0.883813 | 3.266224e-71 | -8.615850e-47 |
| Msa0208190 | Msa1299690 | 0.842429 | 2.599537e-58 | -8.615850e-47 |
| Msa0208190 | Msa1332230 | 0.857251 | 1.854234e-62 | -8.615850e-47 |
| Msa0208190 | Msa1433590 | 0.851780 | 7.103017e-61 | -8.615850e-47 |
| Msa0208190 | Msa1441220 | -0.803018 | 4.257698e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208190 | MtrunA17_Chr2g0307081 | 100.000 | 128 | 0 | 0 | 1 | 128 | 1 | 128 | 7.68e-92 | 261 |
| Msa0208190 | MtrunA17_Chr4g0063571 | 97.656 | 128 | 3 | 0 | 1 | 128 | 1 | 128 | 3.04e-89 | 254 |
| Msa0208190 | MtrunA17_Chr4g0061981 | 34.821 | 112 | 72 | 1 | 8 | 118 | 21 | 132 | 9.29e-17 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208190 | AT4G22380.1 | 93.750 | 128 | 8 | 0 | 1 | 128 | 1 | 128 | 2.87e-77 | 224 |
| Msa0208190 | AT5G20160.1 | 92.969 | 128 | 9 | 0 | 1 | 128 | 1 | 128 | 1.36e-76 | 223 |
| Msa0208190 | AT4G12600.1 | 91.406 | 128 | 11 | 0 | 1 | 128 | 1 | 128 | 2.73e-74 | 217 |
| Msa0208190 | AT5G20160.2 | 74.375 | 160 | 9 | 1 | 1 | 128 | 1 | 160 | 6.99e-70 | 207 |
| Msa0208190 | AT4G12600.2 | 56.284 | 183 | 25 | 2 | 1 | 128 | 1 | 183 | 1.83e-49 | 156 |
| Msa0208190 | AT5G20160.3 | 64.815 | 108 | 6 | 1 | 1 | 76 | 1 | 108 | 6.45e-31 | 107 |
| Msa0208190 | AT5G08180.2 | 36.641 | 131 | 74 | 1 | 5 | 126 | 21 | 151 | 3.66e-23 | 88.6 |
| Msa0208190 | AT5G08180.1 | 36.641 | 131 | 74 | 1 | 5 | 126 | 21 | 151 | 3.66e-23 | 88.6 |
Find 50 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTGTGTACACTATAAA+TGG | 0.179279 | 2_1:+42781041 | Msa0208190:three_prime_UTR |
| AGAGAAGAGGCTTAGGGTTT+TGG | 0.218136 | 2_1:-42777108 | None:intergenic |
| ATGGATTAATGTTATTCTAT+TGG | 0.230931 | 2_1:+42781060 | Msa0208190:three_prime_UTR |
| TCAGCCAAAGGGTAAGCTTT+TGG | 0.274630 | 2_1:-42777275 | None:intergenic |
| TAATTACAAGCAACTCAAAA+AGG | 0.282256 | 2_1:+42777343 | Msa0208190:CDS |
| TGGATTAATGTTATTCTATT+GGG | 0.287540 | 2_1:+42781061 | Msa0208190:three_prime_UTR |
| TTGATCTGAAAGATTGATTT+CGG | 0.342588 | 2_1:+42780850 | Msa0208190:exon |
| TCCTTTACTCGCTGAGGATA+AGG | 0.365424 | 2_1:+42777619 | Msa0208190:CDS |
| AATCAAAAGCACACCTTCAT+TGG | 0.389057 | 2_1:-42777369 | None:intergenic |
| TGTAAGAAGAGAAGAGGCTT+AGG | 0.389455 | 2_1:-42777115 | None:intergenic |
| ACAACTTACGATAACGATAA+TGG | 0.396702 | 2_1:+42777301 | Msa0208190:CDS |
| AAAGATTGATTTCGGTATGA+TGG | 0.399664 | 2_1:+42780858 | Msa0208190:exon |
| TTTAAGTTGACTTCCCTCAT+TGG | 0.429117 | 2_1:-42780695 | None:intergenic |
| CATTTCTGAGTTTGTTGTGA+TGG | 0.445083 | 2_1:+42777559 | Msa0208190:CDS |
| GCACGGACACTCCTCGGATT+AGG | 0.460013 | 2_1:+42781190 | Msa0208190:three_prime_UTR |
| TTTGATGGGACAAATACATA+AGG | 0.470260 | 2_1:-42780613 | None:intergenic |
| ATATTTATATCCACTGTTTG+AGG | 0.472855 | 2_1:+42780975 | Msa0208190:three_prime_UTR |
| GTAAGAAGAGAAGAGGCTTA+GGG | 0.476331 | 2_1:-42777114 | None:intergenic |
| GAATCCAAAAGCTTACCCTT+TGG | 0.476923 | 2_1:+42777271 | Msa0208190:CDS |
| CGTCCAGTCAAAGCCTCAAA+AGG | 0.482572 | 2_1:-42780906 | None:intergenic |
| ATCTCAAATACAACAACTAA+AGG | 0.485983 | 2_1:+42780717 | Msa0208190:CDS |
| AGAAGAAATGTGCGCGCAGT+AGG | 0.493285 | 2_1:-42777072 | None:intergenic |
| TCCTCGGATTAGGCGTGTCC+CGG | 0.509515 | 2_1:+42781200 | Msa0208190:three_prime_UTR |
| AAGATTGATTTCGGTATGAT+GGG | 0.511888 | 2_1:+42780859 | Msa0208190:three_prime_UTR |
| CACTTTCAATCCTCAAACAG+TGG | 0.519537 | 2_1:-42780985 | None:intergenic |
| CGCGCAGTAGGGTTTATAAG+AGG | 0.525807 | 2_1:-42777060 | None:intergenic |
| GTCACAGAACATGCAATCAC+TGG | 0.528661 | 2_1:-42780670 | None:intergenic |
| ACCTTATCCTCAGCGAGTAA+AGG | 0.534236 | 2_1:-42777620 | None:intergenic |
| CAGAACATGCAATCACTGGC+CGG | 0.535766 | 2_1:-42780666 | None:intergenic |
| GAGTTGTGTTCAACTCGAAA+AGG | 0.541959 | 2_1:+42780928 | Msa0208190:three_prime_UTR |
| GTCCCATCAAAACAAGCACT+TGG | 0.547834 | 2_1:+42780625 | Msa0208190:CDS |
| GATTAGGCGTGTCCCGGTGT+CGG | 0.552386 | 2_1:+42781206 | Msa0208190:three_prime_UTR |
| TCATCTTCCTTTACTCGCTG+AGG | 0.553114 | 2_1:+42777613 | Msa0208190:CDS |
| GACGAGCATGTGGTGTGACC+CGG | 0.557034 | 2_1:+42780647 | Msa0208190:CDS |
| TAAGTTGTGCATCAGCCAAA+GGG | 0.569151 | 2_1:-42777286 | None:intergenic |
| CACGGACATCGGACATGACA+CGG | 0.571607 | 2_1:-42781309 | None:intergenic |
| AGAACATGCAATCACTGGCC+GGG | 0.572135 | 2_1:-42780665 | None:intergenic |
| GAAGAAATGTGCGCGCAGTA+GGG | 0.573757 | 2_1:-42777071 | None:intergenic |
| ATCACATAATTATCCGACAC+CGG | 0.578399 | 2_1:-42781219 | None:intergenic |
| GTAAGTTGTGCATCAGCCAA+AGG | 0.580950 | 2_1:-42777287 | None:intergenic |
| ACGGATACGGACACGGACAT+CGG | 0.602411 | 2_1:-42781320 | None:intergenic |
| CAAGCACTTGGACGAGCATG+TGG | 0.613075 | 2_1:+42780637 | Msa0208190:CDS |
| ACATGACACGGACACTGACA+CGG | 0.628121 | 2_1:-42781297 | None:intergenic |
| ACCGGGACACGCCTAATCCG+AGG | 0.629910 | 2_1:-42781201 | None:intergenic |
| GATTGATGTAAGAAGAGAAG+AGG | 0.636011 | 2_1:-42777121 | None:intergenic |
| TGTTCTGTGACAACCAATGA+GGG | 0.643609 | 2_1:+42780682 | Msa0208190:CDS |
| TCACATAATTATCCGACACC+GGG | 0.643761 | 2_1:-42781218 | None:intergenic |
| AGATGAAGAAGAATCTCAAG+TGG | 0.658274 | 2_1:-42777596 | None:intergenic |
| ATGTTCTGTGACAACCAATG+AGG | 0.691643 | 2_1:+42780681 | Msa0208190:CDS |
| GCTACAAAGACACTTAACAG+AGG | 0.744755 | 2_1:+42777536 | Msa0208190:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAAATAAAAAAAT+AGG | - | chr2_1:42777669-42777688 | None:intergenic | 0.0% |
| !!! | TTATTTTTTATTTTTTTTTA+TGG | + | chr2_1:42777771-42777790 | Msa0208190:intron | 0.0% |
| !!! | TATTTTTTATTTTTTTTTAT+GGG | + | chr2_1:42777772-42777791 | Msa0208190:intron | 0.0% |
| !! | AATAATTCAAAAAAATGAAT+AGG | - | chr2_1:42777183-42777202 | None:intergenic | 10.0% |
| !!! | TATTAAAATGATTTATGTTT+TGG | + | chr2_1:42778322-42778341 | Msa0208190:intron | 10.0% |
| !!! | ATATCAATTTTATATTACAA+TGG | + | chr2_1:42779445-42779464 | Msa0208190:intron | 10.0% |
| !!! | TATCAATTTTATATTACAAT+GGG | + | chr2_1:42779446-42779465 | Msa0208190:intron | 10.0% |
| !!! | ATTTTTATTTTCAGTTTCTA+TGG | + | chr2_1:42777412-42777431 | Msa0208190:intron | 15.0% |
| !!! | TAATTGAATTCTGATTATTT+TGG | + | chr2_1:42778260-42778279 | Msa0208190:intron | 15.0% |
| !! | TGTATTCTATTTAATTAGTT+TGG | + | chr2_1:42778522-42778541 | Msa0208190:intron | 15.0% |
| !!! | CATTGAATTTCTAATTTTTT+TGG | - | chr2_1:42778776-42778795 | None:intergenic | 15.0% |
| !! | ACAAAAATAATCATAATTCA+AGG | + | chr2_1:42778901-42778920 | Msa0208190:intron | 15.0% |
| !!! | TATTTTAATTGAAAAATTGG+TGG | + | chr2_1:42779370-42779389 | Msa0208190:intron | 15.0% |
| !!! | TTTAATGGAAATTGTTTTAT+TGG | + | chr2_1:42779799-42779818 | Msa0208190:intron | 15.0% |
| !! | TATTAATTAGAGTTATAAAG+GGG | - | chr2_1:42780157-42780176 | None:intergenic | 15.0% |
| !! | GTATTAATTAGAGTTATAAA+GGG | - | chr2_1:42780158-42780177 | None:intergenic | 15.0% |
| !! | AGTATTAATTAGAGTTATAA+AGG | - | chr2_1:42780159-42780178 | None:intergenic | 15.0% |
| !! | TGAAAATTCAAATAATTACA+TGG | - | chr2_1:42780586-42780605 | None:intergenic | 15.0% |
| !! | TAAAAAGAAAAAGTGGTATT+AGG | + | chr2_1:42777436-42777455 | Msa0208190:intron | 20.0% |
| !! | AAAAAGAAAAAGTGGTATTA+GGG | + | chr2_1:42777437-42777456 | Msa0208190:intron | 20.0% |
| !! | TAAAGTCTAAACAAATCAAA+GGG | - | chr2_1:42778157-42778176 | None:intergenic | 20.0% |
| !! | TTAAAGTCTAAACAAATCAA+AGG | - | chr2_1:42778158-42778177 | None:intergenic | 20.0% |
| !!! | AAATTGTTTTATTGGTAAGT+TGG | + | chr2_1:42779807-42779826 | Msa0208190:intron | 20.0% |
| !! | ATAAGAAATTTGATAAGGTA+AGG | - | chr2_1:42779885-42779904 | None:intergenic | 20.0% |
| !! | ACTTGATAAGAAATTTGATA+AGG | - | chr2_1:42779890-42779909 | None:intergenic | 20.0% |
| !! | TTATCAAGTAATATGTGTAA+TGG | + | chr2_1:42779901-42779920 | Msa0208190:intron | 20.0% |
| !!! | GACACTTTTTTTTTGATAAA+TGG | - | chr2_1:42780119-42780138 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | - | chr2_1:42780194-42780213 | None:intergenic | 20.0% |
| !! | TTAATTTATGACAGTTGAAA+AGG | + | chr2_1:42780553-42780572 | Msa0208190:intron | 20.0% |
| !! | ATTATAACAGCTAATAAAGT+TGG | - | chr2_1:42780781-42780800 | None:intergenic | 20.0% |
| !!! | ATGGATTAATGTTATTCTAT+TGG | + | chr2_1:42781060-42781079 | Msa0208190:three_prime_UTR | 20.0% |
| !! | TGGATTAATGTTATTCTATT+GGG | + | chr2_1:42781061-42781080 | Msa0208190:three_prime_UTR | 20.0% |
| !!! | ATTTTTCACTCTTGTTATTT+TGG | + | chr2_1:42781111-42781130 | Msa0208190:three_prime_UTR | 20.0% |
| ! | CAAAAAAATGAATAGGAGAA+AGG | - | chr2_1:42777176-42777195 | None:intergenic | 25.0% |
| ! | GAATGAAGAAAATTGAGAAA+CGG | - | chr2_1:42777215-42777234 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTGTTGCAGAC+AGG | + | chr2_1:42777239-42777258 | Msa0208190:intron | 25.0% |
| ! | TAATTACAAGCAACTCAAAA+AGG | + | chr2_1:42777343-42777362 | Msa0208190:CDS | 25.0% |
| ! | AATTACAAGCAACTCAAAAA+GGG | + | chr2_1:42777344-42777363 | Msa0208190:CDS | 25.0% |
| ! | CTATGGTTAAAAAGAAAAAG+TGG | + | chr2_1:42777429-42777448 | Msa0208190:intron | 25.0% |
| ! | AATAGGCAATTAACATTTGT+TGG | - | chr2_1:42777652-42777671 | None:intergenic | 25.0% |
| !!! | AAATATGTCTGTGTTTTTGA+AGG | + | chr2_1:42777686-42777705 | Msa0208190:intron | 25.0% |
| !!! | AATATGTCTGTGTTTTTGAA+GGG | + | chr2_1:42777687-42777706 | Msa0208190:intron | 25.0% |
| !! | TCATTGAACTCTGATTATTT+TGG | + | chr2_1:42778375-42778394 | Msa0208190:intron | 25.0% |
| ! | TCCTGTATGAAAAAATAGTT+TGG | + | chr2_1:42778551-42778570 | Msa0208190:intron | 25.0% |
| !!! | TCCAAACTATTTTTTCATAC+AGG | - | chr2_1:42778555-42778574 | None:intergenic | 25.0% |
| ! | TAGTAAAGAGCTTAGAAATT+TGG | + | chr2_1:42778802-42778821 | Msa0208190:intron | 25.0% |
| ! | GATTATTAACCAGATTGTAA+TGG | - | chr2_1:42778840-42778859 | None:intergenic | 25.0% |
| ! | TAATATCATCAACACTAAAG+TGG | + | chr2_1:42778860-42778879 | Msa0208190:intron | 25.0% |
| ! | ATTTGAGGGATTTAAAAATG+AGG | + | chr2_1:42779513-42779532 | Msa0208190:intron | 25.0% |
| !!! | TTTTATTGGTAAGTTGGTAA+CGG | + | chr2_1:42779813-42779832 | Msa0208190:intron | 25.0% |
| !! | CTTTTTATCAAGTTTCTTTG+CGG | + | chr2_1:42779857-42779876 | Msa0208190:intron | 25.0% |
| ! | AGTATATGTATAAGACAATG+CGG | - | chr2_1:42780073-42780092 | None:intergenic | 25.0% |
| ! | ATAAATGGCTCAGTTATTAA+GGG | - | chr2_1:42780104-42780123 | None:intergenic | 25.0% |
| !!! | AAAGGGGAAAAAGTTATTTT+GGG | - | chr2_1:42780141-42780160 | None:intergenic | 25.0% |
| !! | TAAAGGGGAAAAAGTTATTT+TGG | - | chr2_1:42780142-42780161 | None:intergenic | 25.0% |
| ! | CAAAGTGGAATATATTGAAT+TGG | - | chr2_1:42780195-42780214 | None:intergenic | 25.0% |
| ! | AAATAAATGAGAGAGAAAAG+TGG | - | chr2_1:42780247-42780266 | None:intergenic | 25.0% |
| ! | ATATGTGTGAAATGAGAAAA+TGG | + | chr2_1:42780281-42780300 | Msa0208190:intron | 25.0% |
| !!! | TCCATGTCTTTTTAAAATTG+TGG | + | chr2_1:42780338-42780357 | Msa0208190:intron | 25.0% |
| ! | GAAAAACTTTAGATTTGTCT+TGG | - | chr2_1:42780399-42780418 | None:intergenic | 25.0% |
| !! | ATTTGGCATATATTGGTAAT+AGG | - | chr2_1:42780458-42780477 | None:intergenic | 25.0% |
| ! | TTTCTATTCATTCATGTTCT+TGG | + | chr2_1:42780526-42780545 | Msa0208190:intron | 25.0% |
| ! | ATCTCAAATACAACAACTAA+AGG | + | chr2_1:42780717-42780736 | Msa0208190:CDS | 25.0% |
| ! | GAATAATATCAAGCAAAACA+TGG | - | chr2_1:42780749-42780768 | None:intergenic | 25.0% |
| !! | TTGATCTGAAAGATTGATTT+CGG | + | chr2_1:42780850-42780869 | Msa0208190:exon | 25.0% |
| ! | ATATTTATATCCACTGTTTG+AGG | + | chr2_1:42780975-42780994 | Msa0208190:three_prime_UTR | 25.0% |
| ! | AAACTTGTGTACACTATAAA+TGG | + | chr2_1:42781041-42781060 | Msa0208190:three_prime_UTR | 25.0% |
| !! | TGTATTATTCTCTTTTAGCA+CGG | + | chr2_1:42781173-42781192 | Msa0208190:three_prime_UTR | 25.0% |
| ACAACTTACGATAACGATAA+TGG | + | chr2_1:42777301-42777320 | Msa0208190:CDS | 30.0% | |
| AATGTGGATAGAGATTTAGA+AGG | + | chr2_1:42777898-42777917 | Msa0208190:intron | 30.0% | |
| !! | TAGAAAGTATTTATGAGCCT+GGG | + | chr2_1:42777921-42777940 | Msa0208190:intron | 30.0% |
| TAACGTAGACATAATCACTA+TGG | + | chr2_1:42778175-42778194 | Msa0208190:intron | 30.0% | |
| ATACAAACAAAACAGACCAA+AGG | + | chr2_1:42778610-42778629 | Msa0208190:intron | 30.0% | |
| TACAAACAAAACAGACCAAA+GGG | + | chr2_1:42778611-42778630 | Msa0208190:intron | 30.0% | |
| TTGTTCATATATAAGCCCTT+TGG | - | chr2_1:42778629-42778648 | None:intergenic | 30.0% | |
| TCATCTTATCAACACATTAG+TGG | + | chr2_1:42778735-42778754 | Msa0208190:intron | 30.0% | |
| AAAGTTATACAGTAACCCAA+AGG | - | chr2_1:42779405-42779424 | None:intergenic | 30.0% | |
| ! | TTTGGGTTACTGTATAACTT+TGG | + | chr2_1:42779404-42779423 | Msa0208190:intron | 30.0% |
| !! | ACTGTATAACTTTGGTTCTT+TGG | + | chr2_1:42779412-42779431 | Msa0208190:intron | 30.0% |
| !! | CTGTATAACTTTGGTTCTTT+GGG | + | chr2_1:42779413-42779432 | Msa0208190:intron | 30.0% |
| TAGTTTAGATTCGTTTCTTG+TGG | + | chr2_1:42779557-42779576 | Msa0208190:intron | 30.0% | |
| ! | AAGATTTCCTTTTCCTTTTG+TGG | - | chr2_1:42779649-42779668 | None:intergenic | 30.0% |
| GGCATTACATAATTTCAACA+TGG | - | chr2_1:42779749-42779768 | None:intergenic | 30.0% | |
| GGTTAAAGTAATATGTGTAG+TGG | + | chr2_1:42779834-42779853 | Msa0208190:intron | 30.0% | |
| GTGTGATCGTTGAAAATTTA+AGG | - | chr2_1:42780044-42780063 | None:intergenic | 30.0% | |
| GATAAATGGCTCAGTTATTA+AGG | - | chr2_1:42780105-42780124 | None:intergenic | 30.0% | |
| AAGTGCTCTTGATAAGTATT+TGG | - | chr2_1:42780220-42780239 | None:intergenic | 30.0% | |
| AGAAAATGGCTCAGTTAATT+TGG | + | chr2_1:42780295-42780314 | Msa0208190:intron | 30.0% | |
| GAAAATGGCTCAGTTAATTT+GGG | + | chr2_1:42780296-42780315 | Msa0208190:intron | 30.0% | |
| !! | GCCACAATTTTAAAAAGACA+TGG | - | chr2_1:42780342-42780361 | None:intergenic | 30.0% |
| !!! | GTCTTTTTAAAATTGTGGCT+AGG | + | chr2_1:42780343-42780362 | Msa0208190:intron | 30.0% |
| TCAGTCAATTTGGCATATAT+TGG | - | chr2_1:42780465-42780484 | None:intergenic | 30.0% | |
| TGAATGAATAGAAATAGCTG+TGG | - | chr2_1:42780520-42780539 | None:intergenic | 30.0% | |
| TTTGATGGGACAAATACATA+AGG | - | chr2_1:42780616-42780635 | None:intergenic | 30.0% | |
| TGTTATAATGCCAACACATT+TGG | + | chr2_1:42780792-42780811 | Msa0208190:intron | 30.0% | |
| ! | AAAGATTGATTTCGGTATGA+TGG | + | chr2_1:42780858-42780877 | Msa0208190:exon | 30.0% |
| ! | AAGATTGATTTCGGTATGAT+GGG | + | chr2_1:42780859-42780878 | Msa0208190:three_prime_UTR | 30.0% |
| !!! | TTGTTATTTTGGATAAGTCG+AGG | + | chr2_1:42781122-42781141 | Msa0208190:three_prime_UTR | 30.0% |
| GATTGATGTAAGAAGAGAAG+AGG | - | chr2_1:42777124-42777143 | None:intergenic | 35.0% | |
| !! | GAAACAAGGTACCATTTTTG+GGG | - | chr2_1:42777154-42777173 | None:intergenic | 35.0% |
| !! | GGAAACAAGGTACCATTTTT+GGG | - | chr2_1:42777155-42777174 | None:intergenic | 35.0% |
| !! | AGGAAACAAGGTACCATTTT+TGG | - | chr2_1:42777156-42777175 | None:intergenic | 35.0% |
| TGAATAGGAGAAAGGAAACA+AGG | - | chr2_1:42777168-42777187 | None:intergenic | 35.0% | |
| ! | AATCAAAAGCACACCTTCAT+TGG | - | chr2_1:42777372-42777391 | None:intergenic | 35.0% |
| TGATTTATGACTAGTGCAAC+TGG | + | chr2_1:42777467-42777486 | Msa0208190:intron | 35.0% | |
| !! | CATTTCTGAGTTTGTTGTGA+TGG | + | chr2_1:42777559-42777578 | Msa0208190:CDS | 35.0% |
| AGATGAAGAAGAATCTCAAG+TGG | - | chr2_1:42777599-42777618 | None:intergenic | 35.0% | |
| AGCAGCAATAACAGTAACAA+TGG | - | chr2_1:42777741-42777760 | None:intergenic | 35.0% | |
| !! | GTAGAAAGTATTTATGAGCC+TGG | + | chr2_1:42777920-42777939 | Msa0208190:intron | 35.0% |
| CAAAAAACCAACAGAAGGAA+TGG | - | chr2_1:42777954-42777973 | None:intergenic | 35.0% | |
| !!! | TCCTTCTGTTGGTTTTTTGA+AGG | + | chr2_1:42777955-42777974 | Msa0208190:intron | 35.0% |
| TCCTTCAAAAAACCAACAGA+AGG | - | chr2_1:42777959-42777978 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTTTGAAGGACATG+TGG | + | chr2_1:42777963-42777982 | Msa0208190:intron | 35.0% |
| !! | GAGTACTGAGCTTAGAAATT+TGG | - | chr2_1:42778348-42778367 | None:intergenic | 35.0% |
| AACGAAACAGACACAAGAAA+GGG | - | chr2_1:42778502-42778521 | None:intergenic | 35.0% | |
| AAACGAAACAGACACAAGAA+AGG | - | chr2_1:42778503-42778522 | None:intergenic | 35.0% | |
| AAAAACGAGCCATTACAATC+TGG | + | chr2_1:42778828-42778847 | Msa0208190:intron | 35.0% | |
| CGATGTCCATACAAATCAAA+AGG | + | chr2_1:42778945-42778964 | Msa0208190:intron | 35.0% | |
| !!! | TGGGAACCTTTTGATTTGTA+TGG | - | chr2_1:42778954-42778973 | None:intergenic | 35.0% |
| TTGTCATCTTGATGCTCTTT+GGG | - | chr2_1:42778973-42778992 | None:intergenic | 35.0% | |
| !! | AAAGAGCATCAAGATGACAA+GGG | + | chr2_1:42778973-42778992 | Msa0208190:intron | 35.0% |
| !! | TAGTTTACTGCATTTTGGTC+TGG | - | chr2_1:42779035-42779054 | None:intergenic | 35.0% |
| !! | CGTGTTAGTTTACTGCATTT+TGG | - | chr2_1:42779040-42779059 | None:intergenic | 35.0% |
| GCAAAAACCAATAGATGTAG+TGG | + | chr2_1:42779151-42779170 | Msa0208190:intron | 35.0% | |
| GTAGAAAGGATTTACGAGTT+TGG | - | chr2_1:42779184-42779203 | None:intergenic | 35.0% | |
| TGGAGATTCATAAGGTAGAA+AGG | - | chr2_1:42779198-42779217 | None:intergenic | 35.0% | |
| CCTCAAATGCATTAACATCA+GGG | - | chr2_1:42779501-42779520 | None:intergenic | 35.0% | |
| CCTGATGTTAATGCATTTGA+GGG | + | chr2_1:42779499-42779518 | Msa0208190:intron | 35.0% | |
| ! | CTTTGGGAGGGATTATTTAA+TGG | + | chr2_1:42779784-42779803 | Msa0208190:intron | 35.0% |
| !!! | TGGCAAAAAGATTGGTTTTG+GGG | - | chr2_1:42779983-42780002 | None:intergenic | 35.0% |
| !!! | CTGGCAAAAAGATTGGTTTT+GGG | - | chr2_1:42779984-42780003 | None:intergenic | 35.0% |
| !!! | ACTGGCAAAAAGATTGGTTT+TGG | - | chr2_1:42779985-42780004 | None:intergenic | 35.0% |
| !! | GATAAGTATTTGGTGCAAAG+TGG | - | chr2_1:42780210-42780229 | None:intergenic | 35.0% |
| ! | GGCATATATTGGTAATAGGT+CGG | - | chr2_1:42780454-42780473 | None:intergenic | 35.0% |
| AGTCTGGAAAAAACAGAACA+GGG | - | chr2_1:42780493-42780512 | None:intergenic | 35.0% | |
| TAGTCTGGAAAAAACAGAAC+AGG | - | chr2_1:42780494-42780513 | None:intergenic | 35.0% | |
| !! | TTTAAGTTGACTTCCCTCAT+TGG | - | chr2_1:42780698-42780717 | None:intergenic | 35.0% |
| TCAAGAATGTCCAAATGTGT+TGG | - | chr2_1:42780805-42780824 | None:intergenic | 35.0% | |
| TTTGGACATTCTTGATATGC+AGG | + | chr2_1:42780810-42780829 | Msa0208190:intron | 35.0% | |
| ATCACATAATTATCCGACAC+CGG | - | chr2_1:42781222-42781241 | None:intergenic | 35.0% | |
| GTAAGAAGAGAAGAGGCTTA+GGG | - | chr2_1:42777117-42777136 | None:intergenic | 40.0% | |
| TGTAAGAAGAGAAGAGGCTT+AGG | - | chr2_1:42777118-42777137 | None:intergenic | 40.0% | |
| GAATCCAAAAGCTTACCCTT+TGG | + | chr2_1:42777271-42777290 | Msa0208190:CDS | 40.0% | |
| TAAGTTGTGCATCAGCCAAA+GGG | - | chr2_1:42777289-42777308 | None:intergenic | 40.0% | |
| ACTAGTGCAACTGGATTGAA+TGG | + | chr2_1:42777476-42777495 | Msa0208190:intron | 40.0% | |
| GCTACAAAGACACTTAACAG+AGG | + | chr2_1:42777536-42777555 | Msa0208190:intron | 40.0% | |
| TTTATGGGGCAATGTTTGAG+AGG | + | chr2_1:42777787-42777806 | Msa0208190:intron | 40.0% | |
| !! | TAGTGATGGATCTTGTGAAG+TGG | + | chr2_1:42777845-42777864 | Msa0208190:intron | 40.0% |
| !!! | GTTTTTTGAAGGACATGTGG+AGG | + | chr2_1:42777966-42777985 | Msa0208190:intron | 40.0% |
| AATCACTGGTGGAACCAATA+TGG | + | chr2_1:42777994-42778013 | Msa0208190:intron | 40.0% | |
| TGGTGGAACCAATATGGTTT+GGG | + | chr2_1:42778000-42778019 | Msa0208190:intron | 40.0% | |
| GTCTGGTTAGATTATTGCGT+TGG | + | chr2_1:42778062-42778081 | Msa0208190:intron | 40.0% | |
| ! | TTATTGCGTTGGTCTGTTAG+TGG | + | chr2_1:42778073-42778092 | Msa0208190:intron | 40.0% |
| GGTAAACCATGGTTGAGAAT+TGG | + | chr2_1:42778094-42778113 | Msa0208190:intron | 40.0% | |
| CCTAAACCAATTCTCAACCA+TGG | - | chr2_1:42778103-42778122 | None:intergenic | 40.0% | |
| ! | CCATGGTTGAGAATTGGTTT+AGG | + | chr2_1:42778100-42778119 | Msa0208190:intron | 40.0% |
| CACTATGGAAAGACACTACT+AGG | + | chr2_1:42778190-42778209 | Msa0208190:intron | 40.0% | |
| CGTCTCATCAAACATGTAAG+TGG | - | chr2_1:42778298-42778317 | None:intergenic | 40.0% | |
| CTTGTCATCTTGATGCTCTT+TGG | - | chr2_1:42778974-42778993 | None:intergenic | 40.0% | |
| !! | CAAAGAGCATCAAGATGACA+AGG | + | chr2_1:42778972-42778991 | Msa0208190:intron | 40.0% |
| !!! | ATTGGTTTTTGCAAGACACG+TGG | - | chr2_1:42779143-42779162 | None:intergenic | 40.0% |
| ATCTCTGCCACTACATCTAT+TGG | - | chr2_1:42779161-42779180 | None:intergenic | 40.0% | |
| AAGGTGGATGGAGATTCATA+AGG | - | chr2_1:42779206-42779225 | None:intergenic | 40.0% | |
| ! | GAAAAAAAGGGTACATGGAG+AGG | - | chr2_1:42779234-42779253 | None:intergenic | 40.0% |
| ! | TAGCGGAAAAAAAGGGTACA+TGG | - | chr2_1:42779239-42779258 | None:intergenic | 40.0% |
| ! | GGTGAAGTAGCGGAAAAAAA+GGG | - | chr2_1:42779246-42779265 | None:intergenic | 40.0% |
| ! | TGGTGAAGTAGCGGAAAAAA+AGG | - | chr2_1:42779247-42779266 | None:intergenic | 40.0% |
| !! | AAGCTTGCTACTTCAACACT+GGG | - | chr2_1:42779286-42779305 | None:intergenic | 40.0% |
| !! | AAAGCTTGCTACTTCAACAC+TGG | - | chr2_1:42779287-42779306 | None:intergenic | 40.0% |
| CCCTGATGTTAATGCATTTG+AGG | + | chr2_1:42779498-42779517 | Msa0208190:intron | 40.0% | |
| CCCTCAAATGCATTAACATC+AGG | - | chr2_1:42779502-42779521 | None:intergenic | 40.0% | |
| GATTCGTTTCTTGTGGAAAG+TGG | + | chr2_1:42779564-42779583 | Msa0208190:intron | 40.0% | |
| TGTCGTGATTGCAAACATGT+TGG | - | chr2_1:42779598-42779617 | None:intergenic | 40.0% | |
| ATGTTTGCAATCACGACACA+TGG | + | chr2_1:42779600-42779619 | Msa0208190:intron | 40.0% | |
| TAGCGAACCACAAAAGGAAA+AGG | + | chr2_1:42779639-42779658 | Msa0208190:intron | 40.0% | |
| AACTCTAATGCATACCGCTT+GGG | - | chr2_1:42779698-42779717 | None:intergenic | 40.0% | |
| AAACTCTAATGCATACCGCT+TGG | - | chr2_1:42779699-42779718 | None:intergenic | 40.0% | |
| TTTCAACATGGCATACATGC+AGG | - | chr2_1:42779737-42779756 | None:intergenic | 40.0% | |
| CTTCCCACTTTGTGAACTTT+GGG | + | chr2_1:42779768-42779787 | Msa0208190:intron | 40.0% | |
| ! | ACCAATCTTTTTGCCAGTAG+CGG | + | chr2_1:42779987-42780006 | Msa0208190:intron | 40.0% |
| ATGGCTCAGTTATTAAGGGA+CGG | - | chr2_1:42780100-42780119 | None:intergenic | 40.0% | |
| ! | ATGGCTCAGTTAATTTGGGA+CGG | + | chr2_1:42780300-42780319 | Msa0208190:intron | 40.0% |
| CAGGGGAATATCAGTCAATT+TGG | - | chr2_1:42780475-42780494 | None:intergenic | 40.0% | |
| GTCTGGAAAAAACAGAACAG+GGG | - | chr2_1:42780492-42780511 | None:intergenic | 40.0% | |
| !!! | GTCCAAGTGCTTGTTTTGAT+GGG | - | chr2_1:42780630-42780649 | None:intergenic | 40.0% |
| ATGTTCTGTGACAACCAATG+AGG | + | chr2_1:42780681-42780700 | Msa0208190:CDS | 40.0% | |
| TGTTCTGTGACAACCAATGA+GGG | + | chr2_1:42780682-42780701 | Msa0208190:CDS | 40.0% | |
| GAGTTGTGTTCAACTCGAAA+AGG | + | chr2_1:42780928-42780947 | Msa0208190:three_prime_UTR | 40.0% | |
| CACTTTCAATCCTCAAACAG+TGG | - | chr2_1:42780988-42781007 | None:intergenic | 40.0% | |
| TCACATAATTATCCGACACC+GGG | - | chr2_1:42781221-42781240 | None:intergenic | 40.0% | |
| ! | AGAGAAGAGGCTTAGGGTTT+TGG | - | chr2_1:42777111-42777130 | None:intergenic | 45.0% |
| !! | ACAAGGTACCATTTTTGGGG+CGG | - | chr2_1:42777151-42777170 | None:intergenic | 45.0% |
| ! | TCAGCCAAAGGGTAAGCTTT+TGG | - | chr2_1:42777278-42777297 | None:intergenic | 45.0% |
| GTAAGTTGTGCATCAGCCAA+AGG | - | chr2_1:42777290-42777309 | None:intergenic | 45.0% | |
| !! | CTCAAAAAGGGTGCCAATGA+AGG | + | chr2_1:42777356-42777375 | Msa0208190:CDS | 45.0% |
| TCATCTTCCTTTACTCGCTG+AGG | + | chr2_1:42777613-42777632 | Msa0208190:CDS | 45.0% | |
| TCCTTTACTCGCTGAGGATA+AGG | + | chr2_1:42777619-42777638 | Msa0208190:CDS | 45.0% | |
| ACCTTATCCTCAGCGAGTAA+AGG | - | chr2_1:42777623-42777642 | None:intergenic | 45.0% | |
| ! | TGATGGATCTTGTGAAGTGG+CGG | + | chr2_1:42777848-42777867 | Msa0208190:intron | 45.0% |
| ! | TTGTGAAGTGGCGGGAAAAA+GGG | + | chr2_1:42777857-42777876 | Msa0208190:intron | 45.0% |
| TCTCTTGCCATTCCTTCTGT+TGG | + | chr2_1:42777944-42777963 | Msa0208190:intron | 45.0% | |
| !! | TTTTGAAGGACATGTGGAGG+CGG | + | chr2_1:42777969-42777988 | Msa0208190:intron | 45.0% |
| CTGGTGGAACCAATATGGTT+TGG | + | chr2_1:42777999-42778018 | Msa0208190:intron | 45.0% | |
| ! | TGGAACCAATATGGTTTGGG+CGG | + | chr2_1:42778003-42778022 | Msa0208190:intron | 45.0% |
| TGTTACCGCCCAAACCATAT+TGG | - | chr2_1:42778011-42778030 | None:intergenic | 45.0% | |
| GTAGGAAGAAATTTGCACGC+TGG | + | chr2_1:42778040-42778059 | Msa0208190:intron | 45.0% | |
| AAGAAATTTGCACGCTGGTC+TGG | + | chr2_1:42778045-42778064 | Msa0208190:intron | 45.0% | |
| GGTCTGTTAGTGGTAAACCA+TGG | + | chr2_1:42778083-42778102 | Msa0208190:intron | 45.0% | |
| !! | AAAGAGCATCAAGAGGACAG+GGG | - | chr2_1:42778129-42778148 | None:intergenic | 45.0% |
| !! | CAAAGAGCATCAAGAGGACA+GGG | - | chr2_1:42778130-42778149 | None:intergenic | 45.0% |
| CTGTCCTCTTGATGCTCTTT+GGG | + | chr2_1:42778129-42778148 | Msa0208190:intron | 45.0% | |
| CTTGAATCAAGTCTCTGCCA+TGG | + | chr2_1:42778999-42779018 | Msa0208190:intron | 45.0% | |
| !! | ACTGCATTTTGGTCTGGTAG+TGG | - | chr2_1:42779029-42779048 | None:intergenic | 45.0% |
| ACATGGAGAGGATTGAAAGG+TGG | - | chr2_1:42779222-42779241 | None:intergenic | 45.0% | |
| GGTACATGGAGAGGATTGAA+AGG | - | chr2_1:42779225-42779244 | None:intergenic | 45.0% | |
| !! | AGCTTGCTACTTCAACACTG+GGG | - | chr2_1:42779285-42779304 | None:intergenic | 45.0% |
| ! | AGCTTTTCTCCTCTCAAACG+TGG | + | chr2_1:42779301-42779320 | Msa0208190:intron | 45.0% |
| TTGGTGGAGCTCTATACCTT+TGG | + | chr2_1:42779386-42779405 | Msa0208190:intron | 45.0% | |
| TGGTGGAGCTCTATACCTTT+GGG | + | chr2_1:42779387-42779406 | Msa0208190:intron | 45.0% | |
| TGATCACATGACTTCCCAAG+CGG | + | chr2_1:42779681-42779700 | Msa0208190:intron | 45.0% | |
| CCAAAGTTCACAAAGTGGGA+AGG | - | chr2_1:42779770-42779789 | None:intergenic | 45.0% | |
| CCTTCCCACTTTGTGAACTT+TGG | + | chr2_1:42779767-42779786 | Msa0208190:intron | 45.0% | |
| CCTCCCAAAGTTCACAAAGT+GGG | - | chr2_1:42779774-42779793 | None:intergenic | 45.0% | |
| ! | CCACTTTGTGAACTTTGGGA+GGG | + | chr2_1:42779772-42779791 | Msa0208190:intron | 45.0% |
| ACCGCTACTGGCAAAAAGAT+TGG | - | chr2_1:42779991-42780010 | None:intergenic | 45.0% | |
| TGGCTCAGTTATTAAGGGAC+GGG | - | chr2_1:42780099-42780118 | None:intergenic | 45.0% | |
| ! | CTCAGTTAATTTGGGACGGA+GGG | + | chr2_1:42780304-42780323 | Msa0208190:intron | 45.0% |
| TTGTGGCTAGGATTACTCTG+CGG | + | chr2_1:42780355-42780374 | Msa0208190:intron | 45.0% | |
| ! | TTGGTAATAGGTCGGATCTC+AGG | - | chr2_1:42780446-42780465 | None:intergenic | 45.0% |
| AAATAGCTGTGGCTGTAGTC+TGG | - | chr2_1:42780509-42780528 | None:intergenic | 45.0% | |
| GTCCCATCAAAACAAGCACT+TGG | + | chr2_1:42780625-42780644 | Msa0208190:CDS | 45.0% | |
| !!! | CGTCCAAGTGCTTGTTTTGA+TGG | - | chr2_1:42780631-42780650 | None:intergenic | 45.0% |
| GTCACAGAACATGCAATCAC+TGG | - | chr2_1:42780673-42780692 | None:intergenic | 45.0% | |
| ! | TGCTGAATGCTCTCCTTTTG+AGG | + | chr2_1:42780893-42780912 | Msa0208190:three_prime_UTR | 45.0% |
| !!! | TCTCCTTTTGAGGCTTTGAC+TGG | + | chr2_1:42780903-42780922 | Msa0208190:three_prime_UTR | 45.0% |
| !! | AAAAATAAAAAATAAAACAA+AGG | - | chr2_1:42777766-42777785 | None:intergenic | 5.0% |
| !!! | ATTTTTTATTTTTTTTTATG+GGG | + | chr2_1:42777773-42777792 | Msa0208190:intron | 5.0% |
| !! | AAATAATAAAAAAAAAACAA+AGG | - | chr2_1:42779355-42779374 | None:intergenic | 5.0% |
| !!! | TATTATTTTAATTGAAAAAT+TGG | + | chr2_1:42779367-42779386 | Msa0208190:intron | 5.0% |
| CGCGCAGTAGGGTTTATAAG+AGG | - | chr2_1:42777063-42777082 | None:intergenic | 50.0% | |
| GAAGAAATGTGCGCGCAGTA+GGG | - | chr2_1:42777074-42777093 | None:intergenic | 50.0% | |
| AGAAGAAATGTGCGCGCAGT+AGG | - | chr2_1:42777075-42777094 | None:intergenic | 50.0% | |
| TGGGGCAATGTTTGAGAGGT+AGG | + | chr2_1:42777791-42777810 | Msa0208190:intron | 50.0% | |
| AAAGCGTGTTACCTCGACAC+TGG | + | chr2_1:42777817-42777836 | Msa0208190:intron | 50.0% | |
| AAGCGTGTTACCTCGACACT+GGG | + | chr2_1:42777818-42777837 | Msa0208190:intron | 50.0% | |
| GATGGATCTTGTGAAGTGGC+GGG | + | chr2_1:42777849-42777868 | Msa0208190:intron | 50.0% | |
| ! | CTTGTGAAGTGGCGGGAAAA+AGG | + | chr2_1:42777856-42777875 | Msa0208190:intron | 50.0% |
| CAGGGGAGAGGATTGAAATG+TGG | + | chr2_1:42777882-42777901 | Msa0208190:intron | 50.0% | |
| ATGTGGAGGCGGTTAATCAC+TGG | + | chr2_1:42777980-42777999 | Msa0208190:intron | 50.0% | |
| TTTGGGCGGTAACAGTGTCA+CGG | + | chr2_1:42778017-42778036 | Msa0208190:intron | 50.0% | |
| !! | CCAAAGAGCATCAAGAGGAC+AGG | - | chr2_1:42778131-42778150 | None:intergenic | 50.0% |
| CCTGTCCTCTTGATGCTCTT+TGG | + | chr2_1:42778128-42778147 | Msa0208190:intron | 50.0% | |
| !! | GGTCTGGTAGTGGTAAACCA+TGG | - | chr2_1:42779019-42779038 | None:intergenic | 50.0% |
| TTGGGCGGTGACAATGTCAA+GGG | - | chr2_1:42779088-42779107 | None:intergenic | 50.0% | |
| TTTGGGCGGTGACAATGTCA+AGG | - | chr2_1:42779089-42779108 | None:intergenic | 50.0% | |
| ! | TGGAACCAACATGGTTTGGG+CGG | - | chr2_1:42779103-42779122 | None:intergenic | 50.0% |
| CGGTGGAACCAACATGGTTT+GGG | - | chr2_1:42779106-42779125 | None:intergenic | 50.0% | |
| !! | CCAAACCATGTTGGTTCCAC+CGG | + | chr2_1:42779104-42779123 | Msa0208190:intron | 50.0% |
| ! | GGTTTTTGCAAGACACGTGG+CGG | - | chr2_1:42779140-42779159 | None:intergenic | 50.0% |
| GGAGAGGATTGAAAGGTGGA+TGG | - | chr2_1:42779218-42779237 | None:intergenic | 50.0% | |
| ! | TGGTGGATCTGGTGAAGTAG+CGG | - | chr2_1:42779256-42779275 | None:intergenic | 50.0% |
| CTACTTCAACACTGGGGTGA+TGG | - | chr2_1:42779279-42779298 | None:intergenic | 50.0% | |
| TGCGGTTAGCGAACCACAAA+AGG | + | chr2_1:42779633-42779652 | Msa0208190:intron | 50.0% | |
| CCCACTTTGTGAACTTTGGG+AGG | + | chr2_1:42779771-42779790 | Msa0208190:intron | 50.0% | |
| CCCTCCCAAAGTTCACAAAG+TGG | - | chr2_1:42779775-42779794 | None:intergenic | 50.0% | |
| TCACTAAGCTTCACCGCTAC+TGG | - | chr2_1:42780003-42780022 | None:intergenic | 50.0% | |
| CTCAGTTATTAAGGGACGGG+GGG | - | chr2_1:42780096-42780115 | None:intergenic | 50.0% | |
| GCTCAGTTATTAAGGGACGG+GGG | - | chr2_1:42780097-42780116 | None:intergenic | 50.0% | |
| GGCTCAGTTATTAAGGGACG+GGG | - | chr2_1:42780098-42780117 | None:intergenic | 50.0% | |
| ! | GCTCAGTTAATTTGGGACGG+AGG | + | chr2_1:42780303-42780322 | Msa0208190:intron | 50.0% |
| TCTGCGGTCAACTGTAAGCT+GGG | + | chr2_1:42780371-42780390 | Msa0208190:intron | 50.0% | |
| AGAACATGCAATCACTGGCC+GGG | - | chr2_1:42780668-42780687 | None:intergenic | 50.0% | |
| CAGAACATGCAATCACTGGC+CGG | - | chr2_1:42780669-42780688 | None:intergenic | 50.0% | |
| CGTCCAGTCAAAGCCTCAAA+AGG | - | chr2_1:42780909-42780928 | None:intergenic | 50.0% | |
| ! | CTTTTAGCACGGACACTCCT+CGG | + | chr2_1:42781184-42781203 | Msa0208190:three_prime_UTR | 50.0% |
| ACATGACACGGACACTGACA+CGG | - | chr2_1:42781300-42781319 | None:intergenic | 50.0% | |
| !! | GGCTTAGGGTTTTGGCGTGA+AGG | - | chr2_1:42777103-42777122 | None:intergenic | 55.0% |
| !!! | AGGTACCATTTTTGGGGCGG+CGG | - | chr2_1:42777148-42777167 | None:intergenic | 55.0% |
| GGGCGTGTCATGTGTGATTG+TGG | + | chr2_1:42777707-42777726 | Msa0208190:intron | 55.0% | |
| AGCGTGTTACCTCGACACTG+GGG | + | chr2_1:42777819-42777838 | Msa0208190:intron | 55.0% | |
| TCACTATCACCCCAGTGTCG+AGG | - | chr2_1:42777831-42777850 | None:intergenic | 55.0% | |
| ! | CGACACTGGGGTGATAGTGA+TGG | + | chr2_1:42777831-42777850 | Msa0208190:intron | 55.0% |
| ! | AGTGGCGGGAAAAAGGGTAC+AGG | + | chr2_1:42777863-42777882 | Msa0208190:intron | 55.0% |
| ! | GTGGCGGGAAAAAGGGTACA+GGG | + | chr2_1:42777864-42777883 | Msa0208190:intron | 55.0% |
| ! | TGGCGGGAAAAAGGGTACAG+GGG | + | chr2_1:42777865-42777884 | Msa0208190:intron | 55.0% |
| ! | GGAAAAAGGGTACAGGGGAG+AGG | + | chr2_1:42777870-42777889 | Msa0208190:intron | 55.0% |
| GAAGGAATGGCAAGAGACCC+AGG | - | chr2_1:42777941-42777960 | None:intergenic | 55.0% | |
| TGGAGGCGGTTAATCACTGG+TGG | + | chr2_1:42777983-42778002 | Msa0208190:intron | 55.0% | |
| TTGGGCGGTAACAGTGTCAC+GGG | + | chr2_1:42778018-42778037 | Msa0208190:intron | 55.0% | |
| !! | GGTGCCCAAAGAGCATCAAG+AGG | - | chr2_1:42778136-42778155 | None:intergenic | 55.0% |
| TGTCACCGCCCAAACCATGT+TGG | + | chr2_1:42779095-42779114 | Msa0208190:intron | 55.0% | |
| CCGGTGGAACCAACATGGTT+TGG | - | chr2_1:42779107-42779126 | None:intergenic | 55.0% | |
| ! | CTTCAACACTGGGGTGATGG+TGG | - | chr2_1:42779276-42779295 | None:intergenic | 55.0% |
| CAACAAGGGCCACGTTTGAG+AGG | - | chr2_1:42779313-42779332 | None:intergenic | 55.0% | |
| AGCAGCAGCAGCAGCAACAA+GGG | - | chr2_1:42779327-42779346 | None:intergenic | 55.0% | |
| ACACATGGCTTCCCACTGTG+CGG | + | chr2_1:42779615-42779634 | Msa0208190:intron | 55.0% | |
| TGGTTCGCTAACCGCACAGT+GGG | - | chr2_1:42779629-42779648 | None:intergenic | 55.0% | |
| CTCTGCGGTCAACTGTAAGC+TGG | + | chr2_1:42780370-42780389 | Msa0208190:intron | 55.0% | |
| CAAGCACTTGGACGAGCATG+TGG | + | chr2_1:42780637-42780656 | Msa0208190:CDS | 55.0% | |
| AATCGCCGCCGCCCCAAAAA+TGG | + | chr2_1:42777140-42777159 | Msa0208190:exon | 60.0% | |
| GCGGTAACAGTGTCACGGGT+AGG | + | chr2_1:42778022-42778041 | Msa0208190:intron | 60.0% | |
| !! | GAGCACCGGTGGAACCAACA+TGG | - | chr2_1:42779112-42779131 | None:intergenic | 60.0% |
| !! | TGGGGTGATGGTGGTGGATC+TGG | - | chr2_1:42779267-42779286 | None:intergenic | 60.0% |
| !! | CAACACTGGGGTGATGGTGG+TGG | - | chr2_1:42779273-42779292 | None:intergenic | 60.0% |
| CAGCAGCAGCAGCAGCAACA+AGG | - | chr2_1:42779328-42779347 | None:intergenic | 60.0% | |
| GTGGTTCGCTAACCGCACAG+TGG | - | chr2_1:42779630-42779649 | None:intergenic | 60.0% | |
| GACGAGCATGTGGTGTGACC+CGG | + | chr2_1:42780647-42780666 | Msa0208190:CDS | 60.0% | |
| GCACGGACACTCCTCGGATT+AGG | + | chr2_1:42781190-42781209 | Msa0208190:three_prime_UTR | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr2_1:42781200-42781219 | Msa0208190:three_prime_UTR | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | + | chr2_1:42781206-42781225 | Msa0208190:three_prime_UTR | 60.0% | |
| ACGTGGCGGCGATTGAGCAC+CGG | - | chr2_1:42779126-42779145 | None:intergenic | 65.0% | |
| ACCGGGACACGCCTAATCCG+AGG | - | chr2_1:42781204-42781223 | None:intergenic | 65.0% | |
| !! | TGGCGGCGATTGAGCACCGG+TGG | - | chr2_1:42779123-42779142 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 42777052 | 42781329 | 42777052 | ID=Msa0208190;Name=Msa0208190 |
| chr2_1 | mRNA | 42777052 | 42781329 | 42777052 | ID=Msa0208190-mRNA-1;Parent=Msa0208190;Name=Msa0208190-mRNA-1;_AED=0.16;_eAED=0.16;_QI=107|1|1|1|0.75|1|5|471|128 |
| chr2_1 | exon | 42777052 | 42777161 | 42777052 | ID=Msa0208190-mRNA-1:exon:12749;Parent=Msa0208190-mRNA-1 |
| chr2_1 | exon | 42777257 | 42777377 | 42777257 | ID=Msa0208190-mRNA-1:exon:12750;Parent=Msa0208190-mRNA-1 |
| chr2_1 | exon | 42777537 | 42777640 | 42777537 | ID=Msa0208190-mRNA-1:exon:12751;Parent=Msa0208190-mRNA-1 |
| chr2_1 | exon | 42780607 | 42780738 | 42780607 | ID=Msa0208190-mRNA-1:exon:12752;Parent=Msa0208190-mRNA-1 |
| chr2_1 | exon | 42780832 | 42781329 | 42780832 | ID=Msa0208190-mRNA-1:exon:12753;Parent=Msa0208190-mRNA-1 |
| chr2_1 | five_prime_UTR | 42777052 | 42777158 | 42777052 | ID=Msa0208190-mRNA-1:five_prime_utr;Parent=Msa0208190-mRNA-1 |
| chr2_1 | CDS | 42777159 | 42777161 | 42777159 | ID=Msa0208190-mRNA-1:cds;Parent=Msa0208190-mRNA-1 |
| chr2_1 | CDS | 42777257 | 42777377 | 42777257 | ID=Msa0208190-mRNA-1:cds;Parent=Msa0208190-mRNA-1 |
| chr2_1 | CDS | 42777537 | 42777640 | 42777537 | ID=Msa0208190-mRNA-1:cds;Parent=Msa0208190-mRNA-1 |
| chr2_1 | CDS | 42780607 | 42780738 | 42780607 | ID=Msa0208190-mRNA-1:cds;Parent=Msa0208190-mRNA-1 |
| chr2_1 | CDS | 42780832 | 42780858 | 42780832 | ID=Msa0208190-mRNA-1:cds;Parent=Msa0208190-mRNA-1 |
| chr2_1 | three_prime_UTR | 42780859 | 42781329 | 42780859 | ID=Msa0208190-mRNA-1:three_prime_utr;Parent=Msa0208190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
