Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044890 | sp|Q94AH9|FBRL2_ARATH | 90.984 | 244 | 22 | 0 | 71 | 314 | 74 | 317 | 1.01e-166 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0044890 | 0.832656 | 8.347856e-56 | -8.615850e-47 |
| Msa0002790 | Msa0044890 | 0.830376 | 3.040814e-55 | -8.615850e-47 |
| Msa0044890 | Msa0068970 | 0.996321 | 4.637336e-226 | -8.615850e-47 |
| Msa0044890 | Msa0116670 | 0.813518 | 2.457642e-51 | -8.615850e-47 |
| Msa0044890 | Msa0129660 | 0.854801 | 9.662171e-62 | -8.615850e-47 |
| Msa0044890 | Msa0164770 | 0.820669 | 6.069719e-53 | -8.615850e-47 |
| Msa0044890 | Msa0173530 | 0.814764 | 1.304849e-51 | -8.615850e-47 |
| Msa0044890 | Msa0183090 | 0.964938 | 5.825320e-124 | -8.615850e-47 |
| Msa0044890 | Msa0186740 | 0.812232 | 4.701297e-51 | -8.615850e-47 |
| Msa0044890 | Msa0194940 | 0.819157 | 1.345939e-52 | -8.615850e-47 |
| Msa0044890 | Msa0210330 | 0.843072 | 1.753923e-58 | -8.615850e-47 |
| Msa0044890 | Msa0210360 | 0.809813 | 1.571801e-50 | -8.615850e-47 |
| Msa0044890 | Msa0231030 | 0.813370 | 2.649639e-51 | -8.615850e-47 |
| Msa0044890 | Msa0250820 | 0.841947 | 3.487937e-58 | -8.615850e-47 |
| Msa0044890 | Msa0250870 | 0.801213 | 1.000982e-48 | -8.615850e-47 |
| Msa0044890 | Msa0257450 | 0.843715 | 1.181525e-58 | -8.615850e-47 |
| Msa0044890 | Msa0296720 | 0.840233 | 9.838882e-58 | -8.615850e-47 |
| Msa0044890 | Msa0342850 | 0.861961 | 7.100251e-64 | -8.615850e-47 |
| Msa0044890 | Msa0375310 | 0.819925 | 8.988386e-53 | -8.615850e-47 |
| Msa0044890 | Msa0421500 | 0.813695 | 2.247322e-51 | -8.615850e-47 |
| Msa0044890 | Msa0471880 | 0.829255 | 5.701451e-55 | -8.615850e-47 |
| Msa0044890 | Msa0482200 | 0.822935 | 1.814806e-53 | -8.615850e-47 |
| Msa0044890 | Msa0485510 | 0.816164 | 6.366746e-52 | -8.615850e-47 |
| Msa0044890 | Msa0486070 | 0.991533 | 3.733725e-188 | -8.615850e-47 |
| Msa0044890 | Msa0544720 | 0.809926 | 1.485961e-50 | -8.615850e-47 |
| Msa0044890 | Msa0550420 | 0.846002 | 2.854509e-59 | -8.615850e-47 |
| Msa0044890 | Msa0554210 | 0.808998 | 2.351447e-50 | -8.615850e-47 |
| Msa0044890 | Msa0608260 | 0.800201 | 1.610730e-48 | -8.615850e-47 |
| Msa0044890 | Msa0664560 | 0.800449 | 1.433876e-48 | -8.615850e-47 |
| Msa0044890 | Msa0691330 | 0.801854 | 7.396317e-49 | -8.615850e-47 |
| Msa0044890 | Msa0704980 | 0.804568 | 2.029274e-49 | -8.615850e-47 |
| Msa0044890 | Msa0709730 | 0.814373 | 1.592458e-51 | -8.615850e-47 |
| Msa0044890 | Msa0877540 | 0.802226 | 6.203448e-49 | -8.615850e-47 |
| Msa0044890 | Msa0930490 | 0.844406 | 7.708910e-59 | -8.615850e-47 |
| Msa0044890 | Msa0951700 | 0.807297 | 5.415997e-50 | -8.615850e-47 |
| Msa0044890 | Msa1040160 | 0.819812 | 9.542341e-53 | -8.615850e-47 |
| Msa0044890 | Msa1078870 | 0.842500 | 2.490248e-58 | -8.615850e-47 |
| Msa0044890 | Msa1078980 | 0.825937 | 3.570381e-54 | -8.615850e-47 |
| Msa0044890 | Msa1079920 | 0.806096 | 9.708848e-50 | -8.615850e-47 |
| Msa0044890 | Msa1081340 | 0.810695 | 1.014526e-50 | -8.615850e-47 |
| Msa0044890 | Msa1088490 | 0.801463 | 8.899489e-49 | -8.615850e-47 |
| Msa0044890 | Msa1124850 | 0.813533 | 2.438904e-51 | -8.615850e-47 |
| Msa0044890 | Msa1128120 | 0.839637 | 1.406699e-57 | -8.615850e-47 |
| Msa0044890 | Msa1167540 | 0.830483 | 2.862943e-55 | -8.615850e-47 |
| Msa0044890 | Msa1167550 | 0.837472 | 5.094879e-57 | -8.615850e-47 |
| Msa0044890 | Msa1169180 | 0.827760 | 1.309188e-54 | -8.615850e-47 |
| Msa0044890 | Msa1191830 | 0.837110 | 6.304517e-57 | -8.615850e-47 |
| Msa0044890 | Msa1215820 | 0.838342 | 3.043542e-57 | -8.615850e-47 |
| Msa0044890 | Msa1218110 | 0.868996 | 4.308629e-66 | -8.615850e-47 |
| Msa0044890 | Msa1225720 | 0.831212 | 1.896752e-55 | -8.615850e-47 |
| Msa0044890 | Msa1258390 | 0.849823 | 2.524119e-60 | -8.615850e-47 |
| Msa0044890 | Msa1299590 | 0.823682 | 1.214421e-53 | -8.615850e-47 |
| Msa0044890 | Msa1311400 | 0.815925 | 7.200357e-52 | -8.615850e-47 |
| Msa0044890 | Msa1332250 | 0.842974 | 1.862389e-58 | -8.615850e-47 |
| Msa0044890 | Msa1341130 | 0.850071 | 2.151793e-60 | -8.615850e-47 |
| Msa0044890 | Msa1364480 | 0.846481 | 2.114320e-59 | -8.615850e-47 |
| Msa0044890 | Msa1366180 | 0.810819 | 9.534381e-51 | -8.615850e-47 |
| Msa0044890 | Msa1397100 | 0.824944 | 6.133390e-54 | -8.615850e-47 |
| Msa0044890 | Msa1418690 | 0.871717 | 5.524756e-67 | -8.615850e-47 |
| Msa0044890 | Msa1418760 | 0.813154 | 2.954446e-51 | -8.615850e-47 |
| Msa0044890 | Msa1426120 | 0.843909 | 1.048367e-58 | -8.615850e-47 |
| Msa0044890 | Msa1444240 | 0.842244 | 2.910773e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044890 | MtrunA17_Chr1g0211621 | 99.365 | 315 | 0 | 1 | 1 | 315 | 1 | 313 | 0.0 | 616 |
| Msa0044890 | MtrunA17_Chr6g0468501 | 93.985 | 266 | 16 | 0 | 50 | 315 | 12 | 277 | 4.80e-173 | 480 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044890 | AT4G25630.1 | 90.984 | 244 | 22 | 0 | 71 | 314 | 74 | 317 | 1.03e-167 | 469 |
| Msa0044890 | AT5G52470.1 | 90.083 | 242 | 24 | 0 | 71 | 312 | 63 | 304 | 2.79e-165 | 462 |
| Msa0044890 | AT5G52490.1 | 71.074 | 242 | 70 | 0 | 69 | 310 | 51 | 292 | 2.49e-128 | 368 |
| Msa0044890 | AT5G52470.2 | 93.902 | 164 | 10 | 0 | 71 | 234 | 63 | 226 | 3.28e-111 | 324 |
Find 123 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAATACCCTCATGTCTA+TGG | 0.205671 | 1_1:+76557159 | None:intergenic |
| GGAGGTGGGAGAGGTGGTTT+TGG | 0.245696 | 1_1:-76557323 | Msa0044890:CDS |
| TGTCTAGCATCTTCAATAAT+TGG | 0.265009 | 1_1:+76556318 | None:intergenic |
| CTTTACCTAGGAGCTGCTTC+TGG | 0.296675 | 1_1:-76556563 | Msa0044890:CDS |
| AGTTATACAACATGCATATA+GGG | 0.304600 | 1_1:+76554458 | None:intergenic |
| TAAAATATAGTGATATGTTT+TGG | 0.324425 | 1_1:-76554516 | Msa0044890:three_prime_UTR |
| TATAACATTAGTACGCTTCT+TGG | 0.324454 | 1_1:+76556341 | None:intergenic |
| CTAAGACAGAGTATAGAATT+TGG | 0.324854 | 1_1:-76556745 | Msa0044890:CDS |
| CAGTTATACAACATGCATAT+AGG | 0.348827 | 1_1:+76554457 | None:intergenic |
| GGAGGAAGGGGTGGTGATAG+AGG | 0.351363 | 1_1:-76557353 | Msa0044890:CDS |
| TGGGCGTGACTTGGTCAATA+TGG | 0.352165 | 1_1:-76556364 | Msa0044890:CDS |
| TCAAGAGTCACTTGCTCCAT+TGG | 0.352395 | 1_1:+76554785 | None:intergenic |
| GGCCGTGGTGGTTCTGGTGG+AGG | 0.363670 | 1_1:-76557383 | Msa0044890:CDS |
| TGTACAGGCCGTGGTGGTTC+TGG | 0.364877 | 1_1:-76557389 | Msa0044890:intron |
| GGAGGCCGTGGTGGCGGAAG+AGG | 0.374341 | 1_1:-76557221 | Msa0044890:CDS |
| GGAGGTAGAGGAGGTGGGAG+AGG | 0.378171 | 1_1:-76557332 | Msa0044890:CDS |
| GATAGAGGAGGTAGAGGAGG+TGG | 0.391157 | 1_1:-76557338 | Msa0044890:CDS |
| CGGAAGAGGTGGTGGAATGA+AGG | 0.392714 | 1_1:-76557207 | Msa0044890:CDS |
| AGGGACCATGCTTGTGTTGT+TGG | 0.394797 | 1_1:-76554752 | Msa0044890:CDS |
| GTCACTAAGAATCTTGTTCC+TGG | 0.395090 | 1_1:-76557110 | Msa0044890:CDS |
| GGCAGAGGAGGACGTGGAGG+AGG | 0.399351 | 1_1:-76557239 | Msa0044890:CDS |
| TGATGTTGCTCAGCCTGATC+AGG | 0.400610 | 1_1:-76556247 | Msa0044890:intron |
| AGAGGTGGCGGTAGAGGCGG+AGG | 0.402146 | 1_1:-76557263 | Msa0044890:CDS |
| GGAGGGTTCAGAGGAGGAAG+GGG | 0.404742 | 1_1:-76557365 | Msa0044890:CDS |
| CGTGGAGGAGGCCGTGGTGG+CGG | 0.406160 | 1_1:-76557227 | Msa0044890:CDS |
| GGTAGAGGCGGAGGAGGCAG+AGG | 0.408492 | 1_1:-76557254 | Msa0044890:CDS |
| GGTGGCGGTAGAGGCGGAGG+AGG | 0.421527 | 1_1:-76557260 | Msa0044890:CDS |
| GGGTTCAGAGGAGGAAGGGG+TGG | 0.421936 | 1_1:-76557362 | Msa0044890:CDS |
| ACACTTTGTTATTTCTATCA+AGG | 0.422492 | 1_1:-76555201 | Msa0044890:intron |
| TTGGTGGTGTCGACAATATA+TGG | 0.424660 | 1_1:-76556688 | Msa0044890:CDS |
| GGAGGACGTGGAGGAGGCCG+TGG | 0.430468 | 1_1:-76557233 | Msa0044890:CDS |
| AAATTAAACCACACCTGATC+AGG | 0.438185 | 1_1:+76556234 | None:intergenic |
| GGAGGACGAGGAGGAGATAG+AGG | 0.440185 | 1_1:-76557302 | Msa0044890:CDS |
| GGAGGAGGCAGAGGAGGACG+TGG | 0.443901 | 1_1:-76557245 | Msa0044890:CDS |
| AACTGTGGAATCAATACAAT+TGG | 0.448320 | 1_1:+76554865 | None:intergenic |
| CGTGTTCTGTTACCTCGAAC+AGG | 0.448367 | 1_1:+76557568 | None:intergenic |
| GCCAACCAACATTCTGTACT+TGG | 0.454773 | 1_1:+76556290 | None:intergenic |
| CCATCGAAGTGGGCGTGACT+TGG | 0.458744 | 1_1:-76556373 | Msa0044890:CDS |
| ATAGAGGAGGTAGAGGAGGT+GGG | 0.464408 | 1_1:-76557337 | Msa0044890:CDS |
| CGTGGTGGCGGAAGAGGTGG+TGG | 0.465952 | 1_1:-76557215 | Msa0044890:CDS |
| GCTAGAGGTGGCGGTAGAGG+CGG | 0.468529 | 1_1:-76557266 | Msa0044890:CDS |
| AAGGCTAGAGGTGGCGGTAG+AGG | 0.468910 | 1_1:-76557269 | Msa0044890:CDS |
| TCTCATGTGTCTGATATTGT+TGG | 0.470006 | 1_1:-76556530 | Msa0044890:CDS |
| AGATAGAGGTACCCCTTTCA+AGG | 0.470760 | 1_1:-76557288 | Msa0044890:CDS |
| AAGTTGGCAGCTGCTGTCCT+TGG | 0.472296 | 1_1:-76556707 | Msa0044890:CDS |
| GCCGTGGTGGTTCTGGTGGA+GGG | 0.473475 | 1_1:-76557382 | Msa0044890:CDS |
| GGTAGAGGAGGTGGGAGAGG+TGG | 0.474660 | 1_1:-76557329 | Msa0044890:CDS |
| CGCCACCTCTAGCCTTGAAA+GGG | 0.477576 | 1_1:+76557276 | None:intergenic |
| GAAAATACCCTCATGTCTAT+GGG | 0.477789 | 1_1:+76557160 | None:intergenic |
| CCAAGTCACGCCCACTTCGA+TGG | 0.482871 | 1_1:+76556373 | None:intergenic |
| AGAGGCGGAGGAGGCAGAGG+AGG | 0.484426 | 1_1:-76557251 | Msa0044890:CDS |
| GGTGGTGATAGAGGAGGTAG+AGG | 0.485873 | 1_1:-76557344 | Msa0044890:CDS |
| GGCCGTGGTGGCGGAAGAGG+TGG | 0.485933 | 1_1:-76557218 | Msa0044890:CDS |
| GGAAGAGGTGGTGGAATGAA+GGG | 0.492329 | 1_1:-76557206 | Msa0044890:CDS |
| CAAGCATGGTCCCTCTCAAA+TGG | 0.492656 | 1_1:+76554761 | None:intergenic |
| GACCATGCTTGTGTTGTTGG+TGG | 0.497588 | 1_1:-76554749 | Msa0044890:CDS |
| TGAGAAGAGGGTTACCGTGC+AGG | 0.499140 | 1_1:-76557072 | Msa0044890:intron |
| ACCAACATTCTGTACTTGGC+GGG | 0.501411 | 1_1:+76556294 | None:intergenic |
| GCGCTGAATACTGCCTCAGC+TGG | 0.502016 | 1_1:+76554842 | None:intergenic |
| GCTTCATATTATCTCAAAGC+TGG | 0.503141 | 1_1:-76555227 | Msa0044890:CDS |
| GGTGATAGAGGAGGTAGAGG+AGG | 0.504276 | 1_1:-76557341 | Msa0044890:CDS |
| CAGAAGCAGCTCCTAGGTAA+AGG | 0.506248 | 1_1:+76556564 | None:intergenic |
| CTCAAAATATAGAGGCTACT+CGG | 0.506705 | 1_1:+76554697 | None:intergenic |
| CCGCCACCTCTAGCCTTGAA+AGG | 0.514108 | 1_1:+76557275 | None:intergenic |
| TTGGCAGCTGCTGTCCTTGG+TGG | 0.517332 | 1_1:-76556704 | Msa0044890:CDS |
| AGCTGATCAATTTAAGCCAA+TGG | 0.520445 | 1_1:-76554801 | Msa0044890:CDS |
| TTGTTCCAGAAGCAGCTCCT+AGG | 0.523899 | 1_1:+76556558 | None:intergenic |
| TTGATGAGAACGGCTACAAA+GGG | 0.524003 | 1_1:+76557621 | None:intergenic |
| TCATTGTAAACAGCTTCTCC+AGG | 0.524882 | 1_1:+76557092 | None:intergenic |
| AACCAACATTCTGTACTTGG+CGG | 0.526725 | 1_1:+76556293 | None:intergenic |
| GGAGGCAGAGGAGGACGTGG+AGG | 0.526880 | 1_1:-76557242 | Msa0044890:CDS |
| TGGAATGAAGGGAGGAAGCA+AGG | 0.532988 | 1_1:-76557195 | Msa0044890:CDS |
| ACAATGGCTCCTCCTGTTCG+AGG | 0.533054 | 1_1:-76557580 | Msa0044890:intron |
| ACTTATGTTATATTTGCTGA+TGG | 0.533939 | 1_1:-76554566 | Msa0044890:three_prime_UTR |
| TGGAGGGTTCAGAGGAGGAA+GGG | 0.537472 | 1_1:-76557366 | Msa0044890:CDS |
| GAACCCTTTCCGTTCTAAGT+TGG | 0.539930 | 1_1:-76556723 | Msa0044890:CDS |
| GTACAGAATGTTGGTTGGCA+TGG | 0.545696 | 1_1:-76556286 | Msa0044890:CDS |
| TACCATTGTGTCACCAACTT+AGG | 0.548669 | 1_1:-76554666 | Msa0044890:three_prime_UTR |
| CCTTTCAAGGCTAGAGGTGG+CGG | 0.550070 | 1_1:-76557275 | Msa0044890:CDS |
| TTTGATGAGAACGGCTACAA+AGG | 0.552434 | 1_1:+76557620 | None:intergenic |
| TGCGAAGAGTTTGATGAGAA+CGG | 0.554186 | 1_1:+76557611 | None:intergenic |
| TACTGCCTCAGCTGGAACTG+TGG | 0.556438 | 1_1:+76554850 | None:intergenic |
| CTGCCAACTTAGAACGGAAA+GGG | 0.557631 | 1_1:+76556720 | None:intergenic |
| AGGTAAAGGACTTTAGCGCC+AGG | 0.557851 | 1_1:+76556578 | None:intergenic |
| CAAGTCACGCCCACTTCGAT+GGG | 0.558873 | 1_1:+76556374 | None:intergenic |
| ACAGGCCGTGGTGGTTCTGG+TGG | 0.566444 | 1_1:-76557386 | Msa0044890:intron |
| GACTCTTGAACCATTTGAGA+GGG | 0.572197 | 1_1:-76554771 | Msa0044890:CDS |
| GTGGAGGGTTCAGAGGAGGA+AGG | 0.574068 | 1_1:-76557367 | Msa0044890:CDS |
| GGTTCTGGTGGAGGGTTCAG+AGG | 0.575244 | 1_1:-76557374 | Msa0044890:CDS |
| AGAGGTGGTGGAATGAAGGG+AGG | 0.576093 | 1_1:-76557203 | Msa0044890:CDS |
| GGACGTGGAGGAGGCCGTGG+TGG | 0.585474 | 1_1:-76557230 | Msa0044890:CDS |
| CAGCAGCTGCCAACTTAGAA+CGG | 0.593341 | 1_1:+76556714 | None:intergenic |
| TCTGGTGGAGGGTTCAGAGG+AGG | 0.598909 | 1_1:-76557371 | Msa0044890:CDS |
| GGAAGGGGTGGTGATAGAGG+AGG | 0.599693 | 1_1:-76557350 | Msa0044890:CDS |
| AAGCTGTTTACAATGAGAAG+AGG | 0.601232 | 1_1:-76557085 | Msa0044890:CDS |
| AGCTGTTTACAATGAGAAGA+GGG | 0.603845 | 1_1:-76557084 | Msa0044890:CDS |
| GTTGAACCCCATAGACATGA+GGG | 0.606951 | 1_1:-76557167 | Msa0044890:CDS |
| GTTATACAACATGCATATAG+GGG | 0.607535 | 1_1:+76554459 | None:intergenic |
| TGATTCCACAGTTCCAGCTG+AGG | 0.607935 | 1_1:-76554855 | Msa0044890:CDS |
| TGACTCTTGAACCATTTGAG+AGG | 0.609035 | 1_1:-76554772 | Msa0044890:CDS |
| GCATATAGGGGTTAGACTCG+TGG | 0.613422 | 1_1:+76554471 | None:intergenic |
| GCCAAGTACAGAATGTTGGT+TGG | 0.614552 | 1_1:-76556291 | Msa0044890:CDS |
| TCCCGCCAAGTACAGAATGT+TGG | 0.621000 | 1_1:-76556295 | Msa0044890:CDS |
| TGAATTTGTACAGGCCGTGG+TGG | 0.621278 | 1_1:-76557395 | Msa0044890:intron |
| TGTTGAACCCCATAGACATG+AGG | 0.622170 | 1_1:-76557168 | Msa0044890:CDS |
| TAGAATTCTCCCATCGAAGT+GGG | 0.624110 | 1_1:-76556383 | Msa0044890:CDS |
| TCATATTATCTCAAAGCTGG+AGG | 0.625407 | 1_1:-76555224 | Msa0044890:CDS |
| ACCCCTTTCAAGGCTAGAGG+TGG | 0.626063 | 1_1:-76557278 | Msa0044890:CDS |
| CTCCTAAGTTGGTGACACAA+TGG | 0.628348 | 1_1:+76554664 | None:intergenic |
| GCTGCCAACTTAGAACGGAA+AGG | 0.630241 | 1_1:+76556719 | None:intergenic |
| CACCACCTCTTCCGCCACCA+CGG | 0.647973 | 1_1:+76557216 | None:intergenic |
| AGCCACCAACAACACAAGCA+TGG | 0.648785 | 1_1:+76554747 | None:intergenic |
| TCTTCGCAATCTCTCTACAA+TGG | 0.652523 | 1_1:-76557596 | Msa0044890:exon |
| GGTACCCCTTTCAAGGCTAG+AGG | 0.653441 | 1_1:-76557281 | Msa0044890:CDS |
| AAAATACCCTCATGTCTATG+GGG | 0.663716 | 1_1:+76557161 | None:intergenic |
| GTAGAATTCTCCCATCGAAG+TGG | 0.663836 | 1_1:-76556384 | Msa0044890:CDS |
| GGCGCTAAAGTCCTTTACCT+AGG | 0.679116 | 1_1:-76556575 | Msa0044890:CDS |
| ACCCTCCACCAGAACCACCA+CGG | 0.696616 | 1_1:+76557381 | None:intergenic |
| GCCACCTCTAGCCTTGAAAG+GGG | 0.697135 | 1_1:+76557277 | None:intergenic |
| TGAGAAAGGAAATACCTGCA+CGG | 0.697697 | 1_1:+76557058 | None:intergenic |
| GTTCTGTTACCTCGAACAGG+AGG | 0.699595 | 1_1:+76557571 | None:intergenic |
| TGAGGCAGTATTCAGCGCTG+AGG | 0.706093 | 1_1:-76554837 | Msa0044890:CDS |
| ATATATTGTCGACACCACCA+AGG | 0.737399 | 1_1:+76556690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTTAATTTTTTTTT+TGG | - | chr1_1:76557187-76557206 | Msa0044890:CDS | 0.0% |
| !!! | TTTATTTGTTAAAATCAAAT+GGG | - | chr1_1:76554612-76554631 | Msa0044890:three_prime_UTR | 10.0% |
| !! | TGAAAATTTATAAACAAAAT+TGG | + | chr1_1:76556267-76556286 | None:intergenic | 10.0% |
| !! | GAAAATCATTAAAATAAATT+AGG | + | chr1_1:76556520-76556539 | None:intergenic | 10.0% |
| !!! | TTTTTAATTTGTTAACTTTT+TGG | - | chr1_1:76556543-76556562 | Msa0044890:CDS | 10.0% |
| !!! | CATTTGATTTTAACAAATAA+AGG | + | chr1_1:76554613-76554632 | None:intergenic | 15.0% |
| !!! | CTTTATTTGTTAAAATCAAA+TGG | - | chr1_1:76554611-76554630 | Msa0044890:three_prime_UTR | 15.0% |
| !! | TGTCAATATAATGTATTTAA+AGG | + | chr1_1:76555483-76555502 | None:intergenic | 15.0% |
| !!! | TTATATTGACATCTTAATTT+TGG | - | chr1_1:76555492-76555511 | Msa0044890:intron | 15.0% |
| !! | ATATGATGTTTATTAAATAG+TGG | - | chr1_1:76556608-76556627 | Msa0044890:intron | 15.0% |
| !! | TAATGCATAACAAAAAAATA+CGG | + | chr1_1:76557010-76557029 | None:intergenic | 15.0% |
| !!! | CAATTTTATTTTGTATTTGT+AGG | - | chr1_1:76557219-76557238 | Msa0044890:CDS | 15.0% |
| !!! | TTTTTTATCACTTGTTATTT+AGG | - | chr1_1:76557468-76557487 | Msa0044890:intron | 15.0% |
| !!! | TCACTATATTTTAGTAATTT+TGG | + | chr1_1:76557584-76557603 | None:intergenic | 15.0% |
| !!! | TAAAATATAGTGATATGTTT+TGG | - | chr1_1:76557591-76557610 | Msa0044890:exon | 15.0% |
| !! | ATGTTATTGTCTAGTAAAAT+AGG | + | chr1_1:76555178-76555197 | None:intergenic | 20.0% |
| !! | CATGTTATTCTATTTAATAG+TGG | - | chr1_1:76555296-76555315 | Msa0044890:intron | 20.0% |
| !!! | GTGTAAAATGTAAAATGTTT+TGG | - | chr1_1:76556072-76556091 | Msa0044890:intron | 20.0% |
| !! | CGAAAATTTATAAACAAAAC+AGG | + | chr1_1:76556241-76556260 | None:intergenic | 20.0% |
| !!! | TGTTTTATAATGTTAAGAAC+AGG | - | chr1_1:76556426-76556445 | Msa0044890:intron | 20.0% |
| !!! | TTTTAAAGCTTACTTTCTAT+AGG | - | chr1_1:76556968-76556987 | Msa0044890:intron | 20.0% |
| ! | AATAAACTCTAATTCGAACA+AGG | + | chr1_1:76554573-76554592 | None:intergenic | 25.0% |
| ! | AACACAAAACATACATATGT+TGG | + | chr1_1:76555649-76555668 | None:intergenic | 25.0% |
| !! | ATATGTATGTTTTGTGTTTG+AGG | - | chr1_1:76555651-76555670 | Msa0044890:intron | 25.0% |
| ! | TATAATGTTAAGAACAGGAT+TGG | - | chr1_1:76556431-76556450 | Msa0044890:intron | 25.0% |
| ! | ATAATGTTAAGAACAGGATT+GGG | - | chr1_1:76556432-76556451 | Msa0044890:intron | 25.0% |
| ! | TAAAATAAATTAGGCTCAAC+TGG | + | chr1_1:76556511-76556530 | None:intergenic | 25.0% |
| ! | TGATGTTTATTAAATAGTGG+TGG | - | chr1_1:76556611-76556630 | Msa0044890:intron | 25.0% |
| ! | TATACTATGTTGATATTTGC+AGG | - | chr1_1:76556837-76556856 | Msa0044890:intron | 25.0% |
| !!! | ACACTTTGTTATTTCTATCA+AGG | - | chr1_1:76556906-76556925 | Msa0044890:intron | 25.0% |
| !!! | AGCTTTAAAAAACAAGAAAC+TGG | + | chr1_1:76556958-76556977 | None:intergenic | 25.0% |
| ! | ACTTCAATAACAATAAACCA+TGG | - | chr1_1:76557029-76557048 | Msa0044890:intron | 25.0% |
| ! | CTTCAATAACAATAAACCAT+GGG | - | chr1_1:76557030-76557049 | Msa0044890:intron | 25.0% |
| !! | TTTTGACCTTATAACTTCAT+TGG | - | chr1_1:76557082-76557101 | Msa0044890:CDS | 25.0% |
| ! | ATCTATCCAATGAAGTTATA+AGG | + | chr1_1:76557091-76557110 | None:intergenic | 25.0% |
| !! | ATTCATTCACCATTTTACAA+AGG | + | chr1_1:76557128-76557147 | None:intergenic | 25.0% |
| !! | CATGTTTTCTCAAAATATAG+AGG | + | chr1_1:76557421-76557440 | None:intergenic | 25.0% |
| ! | GATAAAAAAAACTCCTAAGT+TGG | + | chr1_1:76557457-76557476 | None:intergenic | 25.0% |
| !! | ACTTATGTTATATTTGCTGA+TGG | - | chr1_1:76557541-76557560 | Msa0044890:intron | 25.0% |
| ! | AGTTATACAACATGCATATA+GGG | + | chr1_1:76557652-76557671 | None:intergenic | 25.0% |
| CTAAGACAGAGTATAGAATT+TGG | - | chr1_1:76555362-76555381 | Msa0044890:intron | 30.0% | |
| !! | TTGGTTTTTATCTAGAAACC+TGG | - | chr1_1:76555511-76555530 | Msa0044890:intron | 30.0% |
| ! | CAAGTTGAACTAATACTTAC+AGG | + | chr1_1:76555604-76555623 | None:intergenic | 30.0% |
| CTGTAAGTATTAGTTCAACT+TGG | - | chr1_1:76555602-76555621 | Msa0044890:intron | 30.0% | |
| TATAACATTAGTACGCTTCT+TGG | + | chr1_1:76555769-76555788 | None:intergenic | 30.0% | |
| TGTCTAGCATCTTCAATAAT+TGG | + | chr1_1:76555792-76555811 | None:intergenic | 30.0% | |
| TGCATTAGTAGAAAAGTGAA+TGG | + | chr1_1:76555956-76555975 | None:intergenic | 30.0% | |
| ! | ACTGATTTAATGTGTCTTGA+TGG | - | chr1_1:76556015-76556034 | Msa0044890:intron | 30.0% |
| !!! | TGTTTTGGTTACTACAACAT+CGG | - | chr1_1:76556087-76556106 | Msa0044890:intron | 30.0% |
| AAATATGTGCATCAGAATCT+CGG | + | chr1_1:76556167-76556186 | None:intergenic | 30.0% | |
| ! | AGATTCTGATGCACATATTT+TGG | - | chr1_1:76556167-76556186 | Msa0044890:intron | 30.0% |
| TAATGTTAAGAACAGGATTG+GGG | - | chr1_1:76556433-76556452 | Msa0044890:intron | 30.0% | |
| CAAGGATATAATGCAAGATA+CGG | + | chr1_1:76556681-76556700 | None:intergenic | 30.0% | |
| AGATTGCAAATCAACAATCA+AGG | + | chr1_1:76556699-76556718 | None:intergenic | 30.0% | |
| !! | TTGATTGTTGATTTGCAATC+TGG | - | chr1_1:76556698-76556717 | Msa0044890:CDS | 30.0% |
| TAATGTTAACCAAATAGCAG+TGG | - | chr1_1:76556778-76556797 | Msa0044890:intron | 30.0% | |
| AATGTTAACCAAATAGCAGT+GGG | - | chr1_1:76556779-76556798 | Msa0044890:intron | 30.0% | |
| ! | TATTTGCAGGCAAGAATTTT+AGG | - | chr1_1:76556850-76556869 | Msa0044890:intron | 30.0% |
| CTTACTTTCTATAGGAATCT+TGG | - | chr1_1:76556976-76556995 | Msa0044890:intron | 30.0% | |
| ! | CCATTTTACAAAGGTTTGAA+GGG | + | chr1_1:76557119-76557138 | None:intergenic | 30.0% |
| ! | ACCATTTTACAAAGGTTTGA+AGG | + | chr1_1:76557120-76557139 | None:intergenic | 30.0% |
| AACTGTGGAATCAATACAAT+TGG | + | chr1_1:76557245-76557264 | None:intergenic | 30.0% | |
| GTTATACAACATGCATATAG+GGG | + | chr1_1:76557651-76557670 | None:intergenic | 30.0% | |
| CAGTTATACAACATGCATAT+AGG | + | chr1_1:76557653-76557672 | None:intergenic | 30.0% | |
| AACTCTAATTCGAACAAGGA+TGG | + | chr1_1:76554569-76554588 | None:intergenic | 35.0% | |
| TTGTTGCGTTGAATTTGTAC+AGG | - | chr1_1:76554703-76554722 | Msa0044890:exon | 35.0% | |
| AAAATACCCTCATGTCTATG+GGG | + | chr1_1:76554949-76554968 | None:intergenic | 35.0% | |
| GAAAATACCCTCATGTCTAT+GGG | + | chr1_1:76554950-76554969 | None:intergenic | 35.0% | |
| TGAAAATACCCTCATGTCTA+TGG | + | chr1_1:76554951-76554970 | None:intergenic | 35.0% | |
| !!! | TGAGGGTATTTTCATTGCTA+AGG | - | chr1_1:76554957-76554976 | Msa0044890:intron | 35.0% |
| !!! | GAGGGTATTTTCATTGCTAA+GGG | - | chr1_1:76554958-76554977 | Msa0044890:intron | 35.0% |
| AAGCTGTTTACAATGAGAAG+AGG | - | chr1_1:76555022-76555041 | Msa0044890:intron | 35.0% | |
| AGCTGTTTACAATGAGAAGA+GGG | - | chr1_1:76555023-76555042 | Msa0044890:intron | 35.0% | |
| ATTCAAAGCACAAACATCCA+AGG | + | chr1_1:76555076-76555095 | None:intergenic | 35.0% | |
| ! | GACATATTTTCTGCAGAATG+AGG | - | chr1_1:76555333-76555352 | Msa0044890:intron | 35.0% |
| ! | TATTTTCTGCAGAATGAGGA+TGG | - | chr1_1:76555337-76555356 | Msa0044890:intron | 35.0% |
| TCTCATGTGTCTGATATTGT+TGG | - | chr1_1:76555577-76555596 | Msa0044890:intron | 35.0% | |
| CATGTTCTGTTTATGTAGAC+TGG | - | chr1_1:76555687-76555706 | Msa0044890:intron | 35.0% | |
| AAATTAAACCACACCTGATC+AGG | + | chr1_1:76555876-76555895 | None:intergenic | 35.0% | |
| ATCATCCAAGAAGTCTTGAA+GGG | + | chr1_1:76556138-76556157 | None:intergenic | 35.0% | |
| AATATGTGCATCAGAATCTC+GGG | + | chr1_1:76556166-76556185 | None:intergenic | 35.0% | |
| ATCATCCAAGAAGTCTTGAA+GGG | + | chr1_1:76556138-76556157 | None:intergenic | 35.0% | |
| ATTGATGTGCATCAGAATCT+CGG | + | chr1_1:76556379-76556398 | None:intergenic | 35.0% | |
| AATGTTAAGAACAGGATTGG+GGG | - | chr1_1:76556434-76556453 | Msa0044890:intron | 35.0% | |
| !! | TAATGACTTGTTTAGGCACA+TGG | - | chr1_1:76556460-76556479 | Msa0044890:intron | 35.0% |
| TAGGCTCAACTGGAAAAAAA+GGG | + | chr1_1:76556501-76556520 | None:intergenic | 35.0% | |
| TTAGGCTCAACTGGAAAAAA+AGG | + | chr1_1:76556502-76556521 | None:intergenic | 35.0% | |
| !! | AAAATGACTTTGAGACTGCA+AGG | + | chr1_1:76556646-76556665 | None:intergenic | 35.0% |
| !! | TGCAGTCTCAAAGTCATTTT+TGG | - | chr1_1:76556646-76556665 | Msa0044890:intron | 35.0% |
| GCTTCATATTATCTCAAAGC+TGG | - | chr1_1:76556880-76556899 | Msa0044890:intron | 35.0% | |
| TCATATTATCTCAAAGCTGG+AGG | - | chr1_1:76556883-76556902 | Msa0044890:intron | 35.0% | |
| CAATAAACCATGGGAAAATG+AGG | - | chr1_1:76557039-76557058 | Msa0044890:intron | 35.0% | |
| ! | ATACTAACCTCATTTTCCCA+TGG | + | chr1_1:76557049-76557068 | None:intergenic | 35.0% |
| TGGGAAAATGAGGTTAGTAT+TGG | - | chr1_1:76557049-76557068 | Msa0044890:intron | 35.0% | |
| CCCTTCAAACCTTTGTAAAA+TGG | - | chr1_1:76557116-76557135 | Msa0044890:CDS | 35.0% | |
| AGCTGATCAATTTAAGCCAA+TGG | - | chr1_1:76557306-76557325 | Msa0044890:CDS | 35.0% | |
| !!! | TCGGCATCTTTTTTCTTCTT+GGG | + | chr1_1:76557394-76557413 | None:intergenic | 35.0% |
| CTCAAAATATAGAGGCTACT+CGG | + | chr1_1:76557413-76557432 | None:intergenic | 35.0% | |
| TTGATGAGAACGGCTACAAA+GGG | + | chr1_1:76554489-76554508 | None:intergenic | 40.0% | |
| TTTGATGAGAACGGCTACAA+AGG | + | chr1_1:76554490-76554509 | None:intergenic | 40.0% | |
| TGCGAAGAGTTTGATGAGAA+CGG | + | chr1_1:76554499-76554518 | None:intergenic | 40.0% | |
| TCTTCGCAATCTCTCTACAA+TGG | - | chr1_1:76554511-76554530 | Msa0044890:three_prime_UTR | 40.0% | |
| GTCACTAAGAATCTTGTTCC+TGG | - | chr1_1:76554997-76555016 | Msa0044890:intron | 40.0% | |
| TCATTGTAAACAGCTTCTCC+AGG | + | chr1_1:76555018-76555037 | None:intergenic | 40.0% | |
| TGAGAAAGGAAATACCTGCA+CGG | + | chr1_1:76555052-76555071 | None:intergenic | 40.0% | |
| GGTATTTCCTTTCTCATCCT+TGG | - | chr1_1:76555056-76555075 | Msa0044890:intron | 40.0% | |
| CAAACATCCAAGGATGAGAA+AGG | + | chr1_1:76555066-76555085 | None:intergenic | 40.0% | |
| ATATATTGTCGACACCACCA+AGG | + | chr1_1:76555420-76555439 | None:intergenic | 40.0% | |
| !! | TTGGTGGTGTCGACAATATA+TGG | - | chr1_1:76555419-76555438 | Msa0044890:intron | 40.0% |
| TAGAATTCTCCCATCGAAGT+GGG | - | chr1_1:76555724-76555743 | Msa0044890:intron | 40.0% | |
| AACCAACATTCTGTACTTGG+CGG | + | chr1_1:76555817-76555836 | None:intergenic | 40.0% | |
| TCATCCAAGAAGTCTTGAAG+GGG | + | chr1_1:76556137-76556156 | None:intergenic | 40.0% | |
| CATCATCCAAGAAGTCTTGA+AGG | + | chr1_1:76556139-76556158 | None:intergenic | 40.0% | |
| AGTGCATGTGATGAGTTACT+CGG | - | chr1_1:76556320-76556339 | Msa0044890:CDS | 40.0% | |
| TCATCCAAGAAGTCTTGAAG+GGG | + | chr1_1:76556137-76556156 | None:intergenic | 40.0% | |
| CATCATCCAAGAAGTCTTGA+AGG | + | chr1_1:76556139-76556158 | None:intergenic | 40.0% | |
| TTGATGTGCATCAGAATCTC+GGG | + | chr1_1:76556378-76556397 | None:intergenic | 40.0% | |
| ACACTGACACGTAGAATACA+TGG | + | chr1_1:76556813-76556832 | None:intergenic | 40.0% | |
| TGTCAATGTTGATGCTTGCT+TGG | - | chr1_1:76557151-76557170 | Msa0044890:CDS | 40.0% | |
| TGACTCTTGAACCATTTGAG+AGG | - | chr1_1:76557335-76557354 | Msa0044890:CDS | 40.0% | |
| GACTCTTGAACCATTTGAGA+GGG | - | chr1_1:76557336-76557355 | Msa0044890:CDS | 40.0% | |
| !!! | CTCGGCATCTTTTTTCTTCT+TGG | + | chr1_1:76557395-76557414 | None:intergenic | 40.0% |
| TACCATTGTGTCACCAACTT+AGG | - | chr1_1:76557441-76557460 | Msa0044890:intron | 40.0% | |
| !! | AGATAGAGGTACCCCTTTCA+AGG | - | chr1_1:76554819-76554838 | Msa0044890:CDS | 45.0% |
| TGTTGAACCCCATAGACATG+AGG | - | chr1_1:76554939-76554958 | Msa0044890:intron | 45.0% | |
| GTTGAACCCCATAGACATGA+GGG | - | chr1_1:76554940-76554959 | Msa0044890:intron | 45.0% | |
| ! | GAACCCTTTCCGTTCTAAGT+TGG | - | chr1_1:76555384-76555403 | Msa0044890:intron | 45.0% |
| CTGCCAACTTAGAACGGAAA+GGG | + | chr1_1:76555390-76555409 | None:intergenic | 45.0% | |
| GTAGAATTCTCCCATCGAAG+TGG | - | chr1_1:76555723-76555742 | Msa0044890:intron | 45.0% | |
| ACCAACATTCTGTACTTGGC+GGG | + | chr1_1:76555816-76555835 | None:intergenic | 45.0% | |
| GCCAAGTACAGAATGTTGGT+TGG | - | chr1_1:76555816-76555835 | Msa0044890:intron | 45.0% | |
| GCCAACCAACATTCTGTACT+TGG | + | chr1_1:76555820-76555839 | None:intergenic | 45.0% | |
| ! | GTACAGAATGTTGGTTGGCA+TGG | - | chr1_1:76555821-76555840 | Msa0044890:intron | 45.0% |
| GGTGCATGTGATGAGTTACT+CGG | - | chr1_1:76556108-76556127 | Msa0044890:intron | 45.0% | |
| GATTCCCCTTCAAGACTTCT+TGG | - | chr1_1:76556130-76556149 | Msa0044890:intron | 45.0% | |
| GATTCCCCTTCAAGACTTCT+TGG | - | chr1_1:76556130-76556149 | Msa0044890:intron | 45.0% | |
| !! | GGGGCAGTAATGACTTGTTT+AGG | - | chr1_1:76556453-76556472 | Msa0044890:intron | 45.0% |
| AGATTCGTCCCACTGCTATT+TGG | + | chr1_1:76556790-76556809 | None:intergenic | 45.0% | |
| TCAAGAGTCACTTGCTCCAT+TGG | + | chr1_1:76557325-76557344 | None:intergenic | 45.0% | |
| !! | CTCCTAAGTTGGTGACACAA+TGG | + | chr1_1:76557446-76557465 | None:intergenic | 45.0% |
| GTTCTGTTACCTCGAACAGG+AGG | + | chr1_1:76554539-76554558 | None:intergenic | 50.0% | |
| CGTGTTCTGTTACCTCGAAC+AGG | + | chr1_1:76554542-76554561 | None:intergenic | 50.0% | |
| CGTTGAATTTGTACAGGCCG+TGG | - | chr1_1:76554709-76554728 | Msa0044890:exon | 50.0% | |
| TGAATTTGTACAGGCCGTGG+TGG | - | chr1_1:76554712-76554731 | Msa0044890:CDS | 50.0% | |
| ATAGAGGAGGTAGAGGAGGT+GGG | - | chr1_1:76554770-76554789 | Msa0044890:CDS | 50.0% | |
| !! | GGAAGAGGTGGTGGAATGAA+GGG | - | chr1_1:76554901-76554920 | Msa0044890:intron | 50.0% |
| TGGAATGAAGGGAGGAAGCA+AGG | - | chr1_1:76554912-76554931 | Msa0044890:intron | 50.0% | |
| GCTGCCAACTTAGAACGGAA+AGG | + | chr1_1:76555391-76555410 | None:intergenic | 50.0% | |
| CAGCAGCTGCCAACTTAGAA+CGG | + | chr1_1:76555396-76555415 | None:intergenic | 50.0% | |
| AGGTAAAGGACTTTAGCGCC+AGG | + | chr1_1:76555532-76555551 | None:intergenic | 50.0% | |
| GGCGCTAAAGTCCTTTACCT+AGG | - | chr1_1:76555532-76555551 | Msa0044890:intron | 50.0% | |
| CAGAAGCAGCTCCTAGGTAA+AGG | + | chr1_1:76555546-76555565 | None:intergenic | 50.0% | |
| CTTTACCTAGGAGCTGCTTC+TGG | - | chr1_1:76555544-76555563 | Msa0044890:intron | 50.0% | |
| TTGTTCCAGAAGCAGCTCCT+AGG | + | chr1_1:76555552-76555571 | None:intergenic | 50.0% | |
| !! | TGGGCGTGACTTGGTCAATA+TGG | - | chr1_1:76555743-76555762 | Msa0044890:intron | 50.0% |
| TCCCGCCAAGTACAGAATGT+TGG | - | chr1_1:76555812-76555831 | Msa0044890:intron | 50.0% | |
| TGATGTTGCTCAGCCTGATC+AGG | - | chr1_1:76555860-76555879 | Msa0044890:intron | 50.0% | |
| TGATTCCACAGTTCCAGCTG+AGG | - | chr1_1:76557252-76557271 | Msa0044890:CDS | 50.0% | |
| CAAGCATGGTCCCTCTCAAA+TGG | + | chr1_1:76557349-76557368 | None:intergenic | 50.0% | |
| AGGGACCATGCTTGTGTTGT+TGG | - | chr1_1:76557355-76557374 | Msa0044890:CDS | 50.0% | |
| ! | GACCATGCTTGTGTTGTTGG+TGG | - | chr1_1:76557358-76557377 | Msa0044890:CDS | 50.0% |
| AGCCACCAACAACACAAGCA+TGG | + | chr1_1:76557363-76557382 | None:intergenic | 50.0% | |
| GCATATAGGGGTTAGACTCG+TGG | + | chr1_1:76557639-76557658 | None:intergenic | 50.0% | |
| ACAATGGCTCCTCCTGTTCG+AGG | - | chr1_1:76554527-76554546 | Msa0044890:three_prime_UTR | 55.0% | |
| TGGAGGGTTCAGAGGAGGAA+GGG | - | chr1_1:76554741-76554760 | Msa0044890:CDS | 55.0% | |
| GGTGGTGATAGAGGAGGTAG+AGG | - | chr1_1:76554763-76554782 | Msa0044890:CDS | 55.0% | |
| GGTGATAGAGGAGGTAGAGG+AGG | - | chr1_1:76554766-76554785 | Msa0044890:CDS | 55.0% | |
| GATAGAGGAGGTAGAGGAGG+TGG | - | chr1_1:76554769-76554788 | Msa0044890:CDS | 55.0% | |
| !!! | AGAGGTGGTTTTGGAGGACG+AGG | - | chr1_1:76554793-76554812 | Msa0044890:CDS | 55.0% |
| GGTACCCCTTTCAAGGCTAG+AGG | - | chr1_1:76554826-76554845 | Msa0044890:CDS | 55.0% | |
| ACCCCTTTCAAGGCTAGAGG+TGG | - | chr1_1:76554829-76554848 | Msa0044890:CDS | 55.0% | |
| !! | GCCACCTCTAGCCTTGAAAG+GGG | + | chr1_1:76554833-76554852 | None:intergenic | 55.0% |
| !! | CGCCACCTCTAGCCTTGAAA+GGG | + | chr1_1:76554834-76554853 | None:intergenic | 55.0% |
| CCTTTCAAGGCTAGAGGTGG+CGG | - | chr1_1:76554832-76554851 | Msa0044890:CDS | 55.0% | |
| !! | CGGAAGAGGTGGTGGAATGA+AGG | - | chr1_1:76554900-76554919 | Msa0044890:intron | 55.0% |
| !! | AGAGGTGGTGGAATGAAGGG+AGG | - | chr1_1:76554904-76554923 | Msa0044890:intron | 55.0% |
| TGAGAAGAGGGTTACCGTGC+AGG | - | chr1_1:76555035-76555054 | Msa0044890:intron | 55.0% | |
| AAGTTGGCAGCTGCTGTCCT+TGG | - | chr1_1:76555400-76555419 | Msa0044890:intron | 55.0% | |
| CAAGTCACGCCCACTTCGAT+GGG | + | chr1_1:76555736-76555755 | None:intergenic | 55.0% | |
| TTGCTCAGCCTGATCAGGTG+TGG | - | chr1_1:76555865-76555884 | Msa0044890:intron | 55.0% | |
| TACTGCCTCAGCTGGAACTG+TGG | + | chr1_1:76557260-76557279 | None:intergenic | 55.0% | |
| TGAGGCAGTATTCAGCGCTG+AGG | - | chr1_1:76557270-76557289 | Msa0044890:CDS | 55.0% | |
| TGTACAGGCCGTGGTGGTTC+TGG | - | chr1_1:76554718-76554737 | Msa0044890:CDS | 60.0% | |
| ACCCTCCACCAGAACCACCA+CGG | + | chr1_1:76554729-76554748 | None:intergenic | 60.0% | |
| ! | GGTTCTGGTGGAGGGTTCAG+AGG | - | chr1_1:76554733-76554752 | Msa0044890:CDS | 60.0% |
| TCTGGTGGAGGGTTCAGAGG+AGG | - | chr1_1:76554736-76554755 | Msa0044890:CDS | 60.0% | |
| GTGGAGGGTTCAGAGGAGGA+AGG | - | chr1_1:76554740-76554759 | Msa0044890:CDS | 60.0% | |
| GGAGGGTTCAGAGGAGGAAG+GGG | - | chr1_1:76554742-76554761 | Msa0044890:CDS | 60.0% | |
| GGAGGAAGGGGTGGTGATAG+AGG | - | chr1_1:76554754-76554773 | Msa0044890:CDS | 60.0% | |
| GGAAGGGGTGGTGATAGAGG+AGG | - | chr1_1:76554757-76554776 | Msa0044890:CDS | 60.0% | |
| ! | GGAGGTGGGAGAGGTGGTTT+TGG | - | chr1_1:76554784-76554803 | Msa0044890:CDS | 60.0% |
| !!! | GGTGGGAGAGGTGGTTTTGG+AGG | - | chr1_1:76554787-76554806 | Msa0044890:CDS | 60.0% |
| !!! | GGTGGTTTTGGAGGACGAGG+AGG | - | chr1_1:76554796-76554815 | Msa0044890:CDS | 60.0% |
| GGAGGACGAGGAGGAGATAG+AGG | - | chr1_1:76554805-76554824 | Msa0044890:CDS | 60.0% | |
| !! | CCGCCACCTCTAGCCTTGAA+AGG | + | chr1_1:76554835-76554854 | None:intergenic | 60.0% |
| ! | AAGGCTAGAGGTGGCGGTAG+AGG | - | chr1_1:76554838-76554857 | Msa0044890:CDS | 60.0% |
| TTGGCAGCTGCTGTCCTTGG+TGG | - | chr1_1:76555403-76555422 | Msa0044890:intron | 60.0% | |
| CCAAGTCACGCCCACTTCGA+TGG | + | chr1_1:76555737-76555756 | None:intergenic | 60.0% | |
| CCATCGAAGTGGGCGTGACT+TGG | - | chr1_1:76555734-76555753 | Msa0044890:intron | 60.0% | |
| GCGCTGAATACTGCCTCAGC+TGG | + | chr1_1:76557268-76557287 | None:intergenic | 60.0% | |
| !! | ACAGGCCGTGGTGGTTCTGG+TGG | - | chr1_1:76554721-76554740 | Msa0044890:CDS | 65.0% |
| !! | GCCGTGGTGGTTCTGGTGGA+GGG | - | chr1_1:76554725-76554744 | Msa0044890:CDS | 65.0% |
| GGGTTCAGAGGAGGAAGGGG+TGG | - | chr1_1:76554745-76554764 | Msa0044890:CDS | 65.0% | |
| GGAGGTAGAGGAGGTGGGAG+AGG | - | chr1_1:76554775-76554794 | Msa0044890:CDS | 65.0% | |
| GGTAGAGGAGGTGGGAGAGG+TGG | - | chr1_1:76554778-76554797 | Msa0044890:CDS | 65.0% | |
| ! | GCTAGAGGTGGCGGTAGAGG+CGG | - | chr1_1:76554841-76554860 | Msa0044890:CDS | 65.0% |
| CACCACCTCTTCCGCCACCA+CGG | + | chr1_1:76554894-76554913 | None:intergenic | 65.0% | |
| !! | GGCCGTGGTGGTTCTGGTGG+AGG | - | chr1_1:76554724-76554743 | Msa0044890:CDS | 70.0% |
| ! | AGAGGTGGCGGTAGAGGCGG+AGG | - | chr1_1:76554844-76554863 | Msa0044890:CDS | 70.0% |
| GGTAGAGGCGGAGGAGGCAG+AGG | - | chr1_1:76554853-76554872 | Msa0044890:CDS | 70.0% | |
| AGAGGCGGAGGAGGCAGAGG+AGG | - | chr1_1:76554856-76554875 | Msa0044890:CDS | 70.0% | |
| GGAGGAGGCAGAGGAGGACG+TGG | - | chr1_1:76554862-76554881 | Msa0044890:CDS | 70.0% | |
| GGAGGCAGAGGAGGACGTGG+AGG | - | chr1_1:76554865-76554884 | Msa0044890:CDS | 70.0% | |
| GGCAGAGGAGGACGTGGAGG+AGG | - | chr1_1:76554868-76554887 | Msa0044890:CDS | 70.0% | |
| !! | CGTGGTGGCGGAAGAGGTGG+TGG | - | chr1_1:76554892-76554911 | Msa0044890:intron | 70.0% |
| ! | GGTGGCGGTAGAGGCGGAGG+AGG | - | chr1_1:76554847-76554866 | Msa0044890:CDS | 75.0% |
| GGAGGACGTGGAGGAGGCCG+TGG | - | chr1_1:76554874-76554893 | Msa0044890:intron | 75.0% | |
| GGACGTGGAGGAGGCCGTGG+TGG | - | chr1_1:76554877-76554896 | Msa0044890:intron | 75.0% | |
| CGTGGAGGAGGCCGTGGTGG+CGG | - | chr1_1:76554880-76554899 | Msa0044890:intron | 75.0% | |
| !! | GGAGGCCGTGGTGGCGGAAG+AGG | - | chr1_1:76554886-76554905 | Msa0044890:intron | 75.0% |
| !! | GGCCGTGGTGGCGGAAGAGG+TGG | - | chr1_1:76554889-76554908 | Msa0044890:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 76554449 | 76557680 | 76554449 | ID=Msa0044890;Name=Msa0044890 |
| chr1_1 | mRNA | 76554449 | 76557680 | 76554449 | ID=Msa0044890-mRNA-1;Parent=Msa0044890;Name=Msa0044890-mRNA-1;_AED=0.07;_eAED=0.07;_QI=81|1|1|1|1|1|7|263|315 |
| chr1_1 | exon | 76554449 | 76554888 | 76554449 | ID=Msa0044890-mRNA-1:exon:26015;Parent=Msa0044890-mRNA-1 |
| chr1_1 | exon | 76555202 | 76555270 | 76555202 | ID=Msa0044890-mRNA-1:exon:26014;Parent=Msa0044890-mRNA-1 |
| chr1_1 | exon | 76556248 | 76556424 | 76556248 | ID=Msa0044890-mRNA-1:exon:26013;Parent=Msa0044890-mRNA-1 |
| chr1_1 | exon | 76556526 | 76556603 | 76556526 | ID=Msa0044890-mRNA-1:exon:26012;Parent=Msa0044890-mRNA-1 |
| chr1_1 | exon | 76556685 | 76556780 | 76556685 | ID=Msa0044890-mRNA-1:exon:26011;Parent=Msa0044890-mRNA-1 |
| chr1_1 | exon | 76557073 | 76557404 | 76557073 | ID=Msa0044890-mRNA-1:exon:26010;Parent=Msa0044890-mRNA-1 |
| chr1_1 | exon | 76557581 | 76557680 | 76557581 | ID=Msa0044890-mRNA-1:exon:26009;Parent=Msa0044890-mRNA-1 |
| chr1_1 | five_prime_UTR | 76557600 | 76557680 | 76557600 | ID=Msa0044890-mRNA-1:five_prime_utr;Parent=Msa0044890-mRNA-1 |
| chr1_1 | CDS | 76557581 | 76557599 | 76557581 | ID=Msa0044890-mRNA-1:cds;Parent=Msa0044890-mRNA-1 |
| chr1_1 | CDS | 76557073 | 76557404 | 76557073 | ID=Msa0044890-mRNA-1:cds;Parent=Msa0044890-mRNA-1 |
| chr1_1 | CDS | 76556685 | 76556780 | 76556685 | ID=Msa0044890-mRNA-1:cds;Parent=Msa0044890-mRNA-1 |
| chr1_1 | CDS | 76556526 | 76556603 | 76556526 | ID=Msa0044890-mRNA-1:cds;Parent=Msa0044890-mRNA-1 |
| chr1_1 | CDS | 76556248 | 76556424 | 76556248 | ID=Msa0044890-mRNA-1:cds;Parent=Msa0044890-mRNA-1 |
| chr1_1 | CDS | 76555202 | 76555270 | 76555202 | ID=Msa0044890-mRNA-1:cds;Parent=Msa0044890-mRNA-1 |
| chr1_1 | CDS | 76554712 | 76554888 | 76554712 | ID=Msa0044890-mRNA-1:cds;Parent=Msa0044890-mRNA-1 |
| chr1_1 | three_prime_UTR | 76554449 | 76554711 | 76554449 | ID=Msa0044890-mRNA-1:three_prime_utr;Parent=Msa0044890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
