Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0960810 | XP_003619878.1 | 95.519 | 424 | 19 | 0 | 1 | 424 | 1 | 424 | 0.0 | 847 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0960810 | sp|Q9LVI9|DPYD_ARATH | 80.653 | 429 | 75 | 4 | 1 | 424 | 1 | 426 | 0.0 | 713 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0960810 | G7KQB6 | 95.519 | 424 | 19 | 0 | 1 | 424 | 1 | 424 | 0.0 | 847 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0026630 | Msa0960810 | 0.802258 | 6.109308e-49 | -8.615850e-47 |
Msa0641130 | Msa0960810 | 0.830637 | 2.625584e-55 | -8.615850e-47 |
Msa0271550 | Msa0960810 | 0.816456 | 5.480158e-52 | -8.615850e-47 |
Msa0545050 | Msa0960810 | 0.819612 | 1.059953e-52 | -8.615850e-47 |
Msa0600590 | Msa0960810 | 0.828831 | 7.225478e-55 | -8.615850e-47 |
Msa0960810 | Msa0964050 | 0.997530 | 3.331011e-244 | -8.615850e-47 |
Msa0960810 | Msa1030810 | 0.811383 | 7.195246e-51 | -8.615850e-47 |
Msa0960810 | Msa1069890 | 0.822889 | 1.860511e-53 | -8.615850e-47 |
Msa0960810 | Msa1168640 | 0.808344 | 3.243636e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0960810 | MtrunA17_Chr6g0479191 | 95.519 | 424 | 19 | 0 | 1 | 424 | 1 | 424 | 0.0 | 847 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0960810 | AT3G17810.1 | 80.653 | 429 | 75 | 4 | 1 | 424 | 1 | 426 | 0.0 | 713 |
Find 111 sgRNAs with CRISPR-Local
Find 380 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATCTGAGTGTTACTGTTAA+TGG | 0.180819 | 6_3:-80932323 | Msa0960810:CDS |
GCAGCTGAGTTTATTCTTCT+TGG | 0.200783 | 6_3:-80928227 | Msa0960810:CDS |
AGATTGCAAGCCTTTCTTTA+TGG | 0.204573 | 6_3:+80927199 | None:intergenic |
TATTTATAAGATTATGATTA+AGG | 0.216600 | 6_3:+80932737 | None:intergenic |
GGTAATATTATAATATTATA+TGG | 0.224296 | 6_3:+80932589 | None:intergenic |
AACTATTCACTTTCTGCTAT+TGG | 0.259287 | 6_3:-80928272 | Msa0960810:CDS |
TGGTATGCCGGAGCGCAAAA+TGG | 0.263705 | 6_3:-80929528 | Msa0960810:CDS |
CAGAATTGCTAGTTCTCATC+TGG | 0.278551 | 6_3:+80932444 | None:intergenic |
TAAGCATTTGGAGGATTATC+TGG | 0.282254 | 6_3:+80932666 | None:intergenic |
CTGGAAATATTGTAAAGAAT+TGG | 0.307064 | 6_3:+80932685 | None:intergenic |
TCTGCAAAAGGAGAAATTAT+TGG | 0.311163 | 6_3:-80930032 | Msa0960810:CDS |
CAAAGGCTACAGTTCCTGTT+TGG | 0.312936 | 6_3:-80929448 | Msa0960810:CDS |
CGTTTGGATGAGTAAGCATT+TGG | 0.341817 | 6_3:+80932654 | None:intergenic |
ACCATCATCATCAACTTTCA+TGG | 0.353220 | 6_3:-80926920 | Msa0960810:three_prime_UTR |
GAACTTAGAGCAACCCTTGC+TGG | 0.357378 | 6_3:+80928577 | None:intergenic |
CGTCCTGAGCCTTGCGTTGA+GGG | 0.358604 | 6_3:-80928487 | Msa0960810:CDS |
GATCCAATCACAAATGGATT+TGG | 0.372017 | 6_3:+80932290 | None:intergenic |
GCTCTTCTTGAAGAAGTTTG+TGG | 0.375842 | 6_3:-80929482 | Msa0960810:CDS |
CGCAAAATGGGTGCTGCTGT+TGG | 0.388137 | 6_3:-80929515 | Msa0960810:CDS |
AAGAGCCTTTGATGAAGGTT+GGG | 0.391243 | 6_3:-80932234 | Msa0960810:CDS |
GCTATTGGTGGTGTTGAGAC+TGG | 0.396156 | 6_3:-80928257 | Msa0960810:CDS |
GAAGCGATGAGAATTCTATC+AGG | 0.397731 | 6_3:+80929930 | None:intergenic |
CTGCAAAAGGAGAAATTATT+GGG | 0.403065 | 6_3:-80930031 | Msa0960810:CDS |
ATGCCAAATCCATTTGTGAT+TGG | 0.408143 | 6_3:-80932293 | Msa0960810:CDS |
AAAGGCTACAGTTCCTGTTT+GGG | 0.415981 | 6_3:-80929447 | Msa0960810:CDS |
AGAGTTTAAGCAATTAAAAG+AGG | 0.416736 | 6_3:-80929958 | Msa0960810:CDS |
TGTAATTATGAATCACCGTT+TGG | 0.417860 | 6_3:+80932638 | None:intergenic |
CAATTCACAATATTCTTAGA+AGG | 0.427150 | 6_3:+80927006 | None:intergenic |
CGGCTACGGGCTAATGCAAA+TGG | 0.429884 | 6_3:-80930056 | Msa0960810:CDS |
AATCCATTTGTGATTGGATC+AGG | 0.430806 | 6_3:-80932287 | Msa0960810:CDS |
CTCTGAAATATCAGTTATGT+TGG | 0.442627 | 6_3:+80929412 | None:intergenic |
GCAAGGGTTGCTCTAAGTTC+AGG | 0.458325 | 6_3:-80928574 | Msa0960810:CDS |
GGAGTCATCTTAGCCCAAAC+AGG | 0.459815 | 6_3:+80929434 | None:intergenic |
TTCATTGGATTGGTCTAGGA+AGG | 0.462264 | 6_3:-80932411 | Msa0960810:CDS |
ATCGATAGAGTCGAACAAAC+TGG | 0.464817 | 6_3:-80929867 | Msa0960810:CDS |
AACCCCTCAACGCAAGGCTC+AGG | 0.469526 | 6_3:+80928484 | None:intergenic |
TATTCACTTTCTGCTATTGG+TGG | 0.475181 | 6_3:-80928269 | Msa0960810:CDS |
CATGCACGTCCTAGTAGAGT+TGG | 0.475768 | 6_3:-80932386 | Msa0960810:CDS |
GGTATGCCGGAGCGCAAAAT+GGG | 0.481117 | 6_3:-80929527 | Msa0960810:CDS |
TGTGAAAGAAAGTGAAAGCA+TGG | 0.486791 | 6_3:-80927150 | Msa0960810:CDS |
TCTTGGTGCAAATACTGTCC+AGG | 0.487074 | 6_3:-80928210 | Msa0960810:intron |
GCAAAATGGGTGCTGCTGTT+GGG | 0.487510 | 6_3:-80929514 | Msa0960810:CDS |
TTTAAATTGCAGGTGTGCAC+TGG | 0.491165 | 6_3:-80927583 | Msa0960810:intron |
AATTCTCATCGCTTCAATCA+TGG | 0.491371 | 6_3:-80929922 | Msa0960810:CDS |
GGACCTGATCCAATCACAAA+TGG | 0.496107 | 6_3:+80932284 | None:intergenic |
AAAGAGCCTTTGATGAAGGT+TGG | 0.497584 | 6_3:-80932235 | Msa0960810:CDS |
CATTTGCATTAGCCCGTAGC+CGG | 0.499385 | 6_3:+80930057 | None:intergenic |
CAAAGGAAAGCCATAAAGAA+AGG | 0.501819 | 6_3:-80927209 | Msa0960810:CDS |
TTGGATGAGTAAGCATTTGG+AGG | 0.501821 | 6_3:+80932657 | None:intergenic |
ATGCACGTCCTAGTAGAGTT+GGG | 0.505524 | 6_3:-80932385 | Msa0960810:CDS |
TCTGAAATATCAGTTATGTT+GGG | 0.506589 | 6_3:+80929413 | None:intergenic |
GTGATTGGATCAGGTCCACC+TGG | 0.507691 | 6_3:-80932278 | Msa0960810:CDS |
TTTGTTAGGTACTCAACTCC+AGG | 0.511040 | 6_3:-80928383 | Msa0960810:intron |
GCAGTTCATCCGATAGCACT+TGG | 0.512671 | 6_3:-80928344 | Msa0960810:CDS |
GGCGTTATGATGCATGGCTA+TGG | 0.516244 | 6_3:-80927562 | Msa0960810:CDS |
CTTTCTGCAAGATTCAGAAA+AGG | 0.520638 | 6_3:+80932507 | None:intergenic |
CTCATGTCCTCATGGTATGC+CGG | 0.520822 | 6_3:-80929540 | Msa0960810:CDS |
AATACAATCATGAGCGTCAT+GGG | 0.525192 | 6_3:-80928529 | Msa0960810:CDS |
AAATACAATCATGAGCGTCA+TGG | 0.529657 | 6_3:-80928530 | Msa0960810:CDS |
GCTTGCAATCTGATAAAGAC+TGG | 0.530476 | 6_3:-80927187 | Msa0960810:CDS |
ACGTCCTGAGCCTTGCGTTG+AGG | 0.531564 | 6_3:-80928488 | Msa0960810:CDS |
AGAACTAGCAATTCTGCACC+TGG | 0.533573 | 6_3:-80932437 | Msa0960810:CDS |
ATAACCTTCCCAAGTGCTAT+CGG | 0.533776 | 6_3:+80928335 | None:intergenic |
ATGTAACTCCTCGTTATGCC+CGG | 0.535192 | 6_3:-80930076 | Msa0960810:CDS |
GATAAAGACTGGACAGGAGA+TGG | 0.535548 | 6_3:-80927176 | Msa0960810:CDS |
AATGCAAATGGATCTGCAAA+AGG | 0.536497 | 6_3:-80930044 | Msa0960810:CDS |
CAATCTGATAAAGACTGGAC+AGG | 0.536629 | 6_3:-80927182 | Msa0960810:CDS |
TTCTTGAAGAAGTTTGTGGA+TGG | 0.536809 | 6_3:-80929478 | Msa0960810:CDS |
ATGAAAAGAGCCTTTGATGA+AGG | 0.541144 | 6_3:-80932239 | Msa0960810:CDS |
AGAGCCTTTGATGAAGGTTG+GGG | 0.541495 | 6_3:-80932233 | Msa0960810:CDS |
GTTTCTGTTTGTAGCCAGCA+AGG | 0.542946 | 6_3:-80928591 | Msa0960810:intron |
TGCTCTAAGTTCAGGATGCG+AGG | 0.553949 | 6_3:-80928566 | Msa0960810:CDS |
ATAAACTTCTCATGTCCTCA+TGG | 0.555561 | 6_3:-80929548 | Msa0960810:CDS |
TCTTGCAAATGAAGTGGTGA+AGG | 0.566366 | 6_3:-80927068 | Msa0960810:three_prime_UTR |
TGCACTGGCGTTATGATGCA+TGG | 0.570814 | 6_3:-80927568 | Msa0960810:CDS |
CACACACTGACTTGGTGCAA+AGG | 0.573029 | 6_3:-80927250 | Msa0960810:CDS |
TTTCTGTTTGTAGCCAGCAA+GGG | 0.576556 | 6_3:-80928590 | Msa0960810:intron |
TTAACAGTAACACTCAGATC+AGG | 0.578177 | 6_3:+80932326 | None:intergenic |
AGGTGATTCTGAATCTGAGT+TGG | 0.586105 | 6_3:+80932568 | None:intergenic |
ATAACAGTATAATTAGTCCC+AGG | 0.587291 | 6_3:+80932260 | None:intergenic |
GTCCTGAGCCTTGCGTTGAG+GGG | 0.588189 | 6_3:-80928486 | Msa0960810:intron |
TATAGCTCTTGCAAATGAAG+TGG | 0.590555 | 6_3:-80927074 | Msa0960810:three_prime_UTR |
ACCGCCCCAACCTTCATCAA+AGG | 0.598376 | 6_3:+80932229 | None:intergenic |
ATTGCCAACCCCTCAACGCA+AGG | 0.601265 | 6_3:+80928478 | None:intergenic |
TGATTGGATCAGGTCCACCT+GGG | 0.601497 | 6_3:-80932277 | Msa0960810:CDS |
CATCAATAGAAGATTTCAGA+GGG | 0.602379 | 6_3:-80927483 | Msa0960810:intron |
GCCTTTGATGAAGGTTGGGG+CGG | 0.602777 | 6_3:-80932230 | Msa0960810:CDS |
AGAGTACAATAAAGCCGCAT+GGG | 0.602901 | 6_3:-80929898 | Msa0960810:CDS |
CAACATAACTGATATTTCAG+AGG | 0.605943 | 6_3:-80929411 | Msa0960810:intron |
AGAATTGCTAGTTCTCATCT+GGG | 0.607718 | 6_3:+80932445 | None:intergenic |
AGCAAGAAGCAATTAAGCAA+AGG | 0.608908 | 6_3:-80927226 | Msa0960810:CDS |
TCTTTCAACATGGTTTCAAG+CGG | 0.612116 | 6_3:+80929978 | None:intergenic |
AAGAGTACAATAAAGCCGCA+TGG | 0.612930 | 6_3:-80929899 | Msa0960810:CDS |
CAAATGCTTACTCATCCAAA+CGG | 0.613014 | 6_3:-80932653 | Msa0960810:five_prime_UTR |
TTGTGGATGGATAAATGCAA+AGG | 0.617242 | 6_3:-80929465 | Msa0960810:CDS |
ACATCAATAGAAGATTTCAG+AGG | 0.619025 | 6_3:-80927484 | Msa0960810:CDS |
CAGTTCATCCGATAGCACTT+GGG | 0.631187 | 6_3:-80928343 | Msa0960810:CDS |
GTACAATAAAGCCGCATGGG+AGG | 0.631532 | 6_3:-80929895 | Msa0960810:CDS |
TCATCCGATAGCACTTGGGA+AGG | 0.632133 | 6_3:-80928339 | Msa0960810:CDS |
GCCCGTAGCCGGGCATAACG+AGG | 0.632333 | 6_3:+80930068 | None:intergenic |
ATCGATAAGCTCCTCCCATG+CGG | 0.636350 | 6_3:+80929884 | None:intergenic |
AAGCGATGAGAATTCTATCA+GGG | 0.636759 | 6_3:+80929931 | None:intergenic |
TTGCTTAAACTCTTTCAACA+TGG | 0.637483 | 6_3:+80929968 | None:intergenic |
GCTCTAAGTTCAGGATGCGA+GGG | 0.640142 | 6_3:-80928565 | Msa0960810:CDS |
GAACTAGCAATTCTGCACCT+GGG | 0.647996 | 6_3:-80932436 | Msa0960810:CDS |
GCCATGAAAGTTGATGATGA+TGG | 0.648057 | 6_3:+80926919 | None:intergenic |
CAAAAGGAGAAATTATTGGG+TGG | 0.669484 | 6_3:-80930028 | Msa0960810:CDS |
ATTGGTGGTGTTGAGACTGG+TGG | 0.671887 | 6_3:-80928254 | Msa0960810:CDS |
GACCAATCCAATGAAAACCC+AGG | 0.680757 | 6_3:+80932419 | None:intergenic |
ACAGTATAATTAGTCCCAGG+TGG | 0.689168 | 6_3:+80932263 | None:intergenic |
GTTAGGTACTCAACTCCAGG+TGG | 0.710353 | 6_3:-80928380 | Msa0960810:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATGATTTTTAATTTTTAGT+TGG | + | chr6_3:80926896-80926915 | None:intergenic | 10.0% |
!! | TATTTATAAGATTATGATTA+AGG | + | chr6_3:80926920-80926939 | None:intergenic | 10.0% |
!! | GGTAATATTATAATATTATA+TGG | + | chr6_3:80927068-80927087 | None:intergenic | 10.0% |
!! | ATATTTCATATTTCATTATA+AGG | + | chr6_3:80929398-80929417 | None:intergenic | 10.0% |
!!! | AAATTTTGAATAAAAATTAC+AGG | - | chr6_3:80932359-80932378 | Msa0960810:CDS | 10.0% |
!!! | AATTTTGAATAAAAATTACA+GGG | - | chr6_3:80932360-80932379 | Msa0960810:CDS | 10.0% |
!!! | TCAATTTTTTCCTTAAAAAA+TGG | - | chr6_3:80927171-80927190 | Msa0960810:CDS | 15.0% |
!!! | TTATTGGTTAAAATTCATAT+GGG | + | chr6_3:80928984-80929003 | None:intergenic | 15.0% |
!!! | TTTATTGGTTAAAATTCATA+TGG | + | chr6_3:80928985-80929004 | None:intergenic | 15.0% |
!!! | ATTTGATTATTTGTTTTGTT+AGG | - | chr6_3:80929528-80929547 | Msa0960810:CDS | 15.0% |
!!! | AAAAGAATATCAAAATTTTC+AGG | + | chr6_3:80930072-80930091 | None:intergenic | 15.0% |
!!! | GAAAATTTTGATATTCTTTT+AGG | - | chr6_3:80930072-80930091 | Msa0960810:CDS | 15.0% |
!!! | TGAAAAACAAATATCATTTT+TGG | + | chr6_3:80930465-80930484 | None:intergenic | 15.0% |
!!! | TTTGTTTTTCACAAAATTAA+AGG | - | chr6_3:80930474-80930493 | Msa0960810:intron | 15.0% |
!! | AAAATAAATAAATCAGAATC+TGG | - | chr6_3:80930825-80930844 | Msa0960810:intron | 15.0% |
!!! | AATTTGTCAAAAATTTTGTT+AGG | - | chr6_3:80931257-80931276 | Msa0960810:intron | 15.0% |
!!! | TCAAAACTTTTATAAATACA+TGG | - | chr6_3:80932201-80932220 | Msa0960810:intron | 15.0% |
!!! | ATATGATTTTCTTTATTGTT+TGG | + | chr6_3:80932243-80932262 | None:intergenic | 15.0% |
!!! | ATTGTGAATTGTTTTATATT+AGG | - | chr6_3:80932660-80932679 | Msa0960810:five_prime_UTR | 15.0% |
!! | AGAAACAGAAAAAGAATAAA+AGG | + | chr6_3:80927109-80927128 | None:intergenic | 20.0% |
!! | AAATAATGATTTCACGAATT+CGG | - | chr6_3:80927567-80927586 | Msa0960810:CDS | 20.0% |
!!! | TTGTTCCATTTTTGTTTTTT+GGG | + | chr6_3:80928202-80928221 | None:intergenic | 20.0% |
!!! | TTTGTTCCATTTTTGTTTTT+TGG | + | chr6_3:80928203-80928222 | None:intergenic | 20.0% |
!!! | TTTCCAATACACTTTTTTAT+CGG | - | chr6_3:80928897-80928916 | Msa0960810:intron | 20.0% |
!!! | GTTCTTTTAACCATATTTTA+AGG | - | chr6_3:80930280-80930299 | Msa0960810:intron | 20.0% |
!! | TTCTTAAACACCTTAAAATA+TGG | + | chr6_3:80930293-80930312 | None:intergenic | 20.0% |
! | CTGGAAATATTGTAAAGAAT+TGG | + | chr6_3:80926972-80926991 | None:intergenic | 25.0% |
!!! | TATGGATTTTGATTAGTGAT+TGG | + | chr6_3:80927050-80927069 | None:intergenic | 25.0% |
!!! | CTTAAATTCGCCATTTTTTA+AGG | + | chr6_3:80927184-80927203 | None:intergenic | 25.0% |
! | CTTGATTAATGTAATTGTCA+TGG | - | chr6_3:80927540-80927559 | Msa0960810:CDS | 25.0% |
!! | TCATTGTTTCTTCATAATGT+TGG | - | chr6_3:80927703-80927722 | Msa0960810:intron | 25.0% |
!! | CATTGTTTCTTCATAATGTT+GGG | - | chr6_3:80927704-80927723 | Msa0960810:intron | 25.0% |
!! | ATTGTTTCTTCATAATGTTG+GGG | - | chr6_3:80927705-80927724 | Msa0960810:intron | 25.0% |
! | TTATTAGTAATACATGTGCA+TGG | - | chr6_3:80927806-80927825 | Msa0960810:intron | 25.0% |
! | AATATATCACATAGAGCTTA+TGG | + | chr6_3:80927960-80927979 | None:intergenic | 25.0% |
!!! | TCATAAAAGTGTTGATGTTT+TGG | + | chr6_3:80928496-80928515 | None:intergenic | 25.0% |
!!! | TCAATACAAAAGTGCTTAAA+TGG | - | chr6_3:80928554-80928573 | Msa0960810:CDS | 25.0% |
!! | TGCTTTTCTGACTATTAAAA+TGG | - | chr6_3:80928747-80928766 | Msa0960810:intron | 25.0% |
! | CACATTGTTTAGAGAAAAAA+GGG | + | chr6_3:80928787-80928806 | None:intergenic | 25.0% |
! | TCACATTGTTTAGAGAAAAA+AGG | + | chr6_3:80928788-80928807 | None:intergenic | 25.0% |
!! | TAACCGATAAAAAAGTGTAT+TGG | + | chr6_3:80928903-80928922 | None:intergenic | 25.0% |
!! | TTATCGGTTAAATTTCACAT+CGG | - | chr6_3:80928913-80928932 | Msa0960810:intron | 25.0% |
! | ATGTGAATCCCATATAAATT+TGG | - | chr6_3:80928948-80928967 | Msa0960810:intron | 25.0% |
! | ATTAAGGAAAAAACTGTCTT+TGG | + | chr6_3:80929062-80929081 | None:intergenic | 25.0% |
! | TTGTCAAATTACAGATATAG+TGG | + | chr6_3:80929259-80929278 | None:intergenic | 25.0% |
! | TCATATTTCATTATAAGGTC+AGG | + | chr6_3:80929393-80929412 | None:intergenic | 25.0% |
! | AGAGTTTAAGCAATTAAAAG+AGG | - | chr6_3:80929696-80929715 | Msa0960810:intron | 25.0% |
!!! | TAGTTCGGTTTTTAAAACAT+AGG | + | chr6_3:80929862-80929881 | None:intergenic | 25.0% |
! | TATAGTTCAACCTCTTTAAA+TGG | - | chr6_3:80929909-80929928 | Msa0960810:CDS | 25.0% |
!! | TCTGAAATATCAGTTATGTT+GGG | + | chr6_3:80930244-80930263 | None:intergenic | 25.0% |
!!! | ATTTTAAGGTGTTTAAGAAG+TGG | - | chr6_3:80930294-80930313 | Msa0960810:intron | 25.0% |
! | TTGTCGAATTATCAAATTTC+TGG | - | chr6_3:80930321-80930340 | Msa0960810:intron | 25.0% |
!! | TGTTTAAAGTTTAAATGCAC+AGG | + | chr6_3:80930500-80930519 | None:intergenic | 25.0% |
! | AACAGTTTCTCAAAATAAGT+TGG | - | chr6_3:80930591-80930610 | Msa0960810:intron | 25.0% |
!!! | TTGTGTAGAAAGTCATTTTT+AGG | + | chr6_3:80930677-80930696 | None:intergenic | 25.0% |
! | GTTAAAAGACAAATCAAGAT+CGG | - | chr6_3:80930711-80930730 | Msa0960810:intron | 25.0% |
! | AAAATATCGAGCTTGAAATA+TGG | + | chr6_3:80930797-80930816 | None:intergenic | 25.0% |
! | TCAATATCAAGGATCAAATA+GGG | + | chr6_3:80931702-80931721 | None:intergenic | 25.0% |
! | TTCAATATCAAGGATCAAAT+AGG | + | chr6_3:80931703-80931722 | None:intergenic | 25.0% |
!! | TTTTCTTTATTGTTTGGATG+AGG | + | chr6_3:80932237-80932256 | None:intergenic | 25.0% |
! | CAATTCACAATATTCTTAGA+AGG | + | chr6_3:80932651-80932670 | None:intergenic | 25.0% |
! | GCTTAAAAATCACATATTTG+AGG | + | chr6_3:80932763-80932782 | None:intergenic | 25.0% |
!!! | CAAATATGTGATTTTTAAGC+TGG | - | chr6_3:80932763-80932782 | Msa0960810:five_prime_UTR | 25.0% |
TGTAATTATGAATCACCGTT+TGG | + | chr6_3:80927019-80927038 | None:intergenic | 30.0% | |
AAAAGGAAGAAGAAAAACAG+AGG | + | chr6_3:80927133-80927152 | None:intergenic | 30.0% | |
ATAACAGTATAATTAGTCCC+AGG | + | chr6_3:80927397-80927416 | None:intergenic | 30.0% | |
!! | AAGTTGAGTGTTTGATTTGT+TGG | - | chr6_3:80927764-80927783 | Msa0960810:intron | 30.0% |
ACTTATGATACAATGCTTAC+AGG | - | chr6_3:80927893-80927912 | Msa0960810:intron | 30.0% | |
AATAAGCTGAAAACAGCTTA+TGG | + | chr6_3:80927936-80927955 | None:intergenic | 30.0% | |
TGGGAAAAAAAATACACACA+AGG | - | chr6_3:80928124-80928143 | Msa0960810:intron | 30.0% | |
GGGAAAAAAAATACACACAA+GGG | - | chr6_3:80928125-80928144 | Msa0960810:intron | 30.0% | |
GGAAAAAAAATACACACAAG+GGG | - | chr6_3:80928126-80928145 | Msa0960810:intron | 30.0% | |
!!! | TTTTTTGGGTGGTTTTTAAG+GGG | + | chr6_3:80928188-80928207 | None:intergenic | 30.0% |
!!! | GTTTTTTGGGTGGTTTTTAA+GGG | + | chr6_3:80928189-80928208 | None:intergenic | 30.0% |
!!! | TGTTTTTTGGGTGGTTTTTA+AGG | + | chr6_3:80928190-80928209 | None:intergenic | 30.0% |
AACCACCCAAAAAACAAAAA+TGG | - | chr6_3:80928194-80928213 | Msa0960810:intron | 30.0% | |
!!! | TTCCATTTTTGTTTTTTGGG+TGG | + | chr6_3:80928199-80928218 | None:intergenic | 30.0% |
!!! | TAAAAGTGTTGATGTTTTGG+TGG | + | chr6_3:80928493-80928512 | None:intergenic | 30.0% |
!! | TACAAAAGTGCTTAAATGGT+TGG | - | chr6_3:80928558-80928577 | Msa0960810:CDS | 30.0% |
CAAAACAAAACCACAAAAGA+TGG | + | chr6_3:80928589-80928608 | None:intergenic | 30.0% | |
TTTGCATGACTTATGTTGAA+AGG | - | chr6_3:80928605-80928624 | Msa0960810:intron | 30.0% | |
TTGCATGACTTATGTTGAAA+GGG | - | chr6_3:80928606-80928625 | Msa0960810:intron | 30.0% | |
!!! | ACATTTTGTTTGTACCGATT+AGG | - | chr6_3:80928639-80928658 | Msa0960810:intron | 30.0% |
! | TACTCATGTATTGTTTCTTG+AGG | - | chr6_3:80928695-80928714 | Msa0960810:intron | 30.0% |
TGAATCCCATATAAATTTGG+CGG | - | chr6_3:80928951-80928970 | Msa0960810:intron | 30.0% | |
! | TAACCAATAAAAGAGTGTGT+TGG | - | chr6_3:80928994-80929013 | Msa0960810:intron | 30.0% |
! | TTTCCAACACACTCTTTTAT+TGG | + | chr6_3:80929000-80929019 | None:intergenic | 30.0% |
AGCAAACAGAACAGTTATAA+CGG | + | chr6_3:80929433-80929452 | None:intergenic | 30.0% | |
! | ATAACTGTTCTGTTTGCTTT+TGG | - | chr6_3:80929435-80929454 | Msa0960810:CDS | 30.0% |
TCTGCAAAAGGAGAAATTAT+TGG | - | chr6_3:80929622-80929641 | Msa0960810:intron | 30.0% | |
CTGCAAAAGGAGAAATTATT+GGG | - | chr6_3:80929623-80929642 | Msa0960810:intron | 30.0% | |
TTGCTTAAACTCTTTCAACA+TGG | + | chr6_3:80929689-80929708 | None:intergenic | 30.0% | |
TAACTGTACGTAGTAAAAAC+TGG | - | chr6_3:80929969-80929988 | Msa0960810:CDS | 30.0% | |
!! | CTCTGAAATATCAGTTATGT+TGG | + | chr6_3:80930245-80930264 | None:intergenic | 30.0% |
CAACATAACTGATATTTCAG+AGG | - | chr6_3:80930243-80930262 | Msa0960810:intron | 30.0% | |
ATAACTGATATTTCAGAGGT+TGG | - | chr6_3:80930247-80930266 | Msa0960810:intron | 30.0% | |
TAGGAACTCTTCAGATATTT+GGG | + | chr6_3:80930658-80930677 | None:intergenic | 30.0% | |
TTAGGAACTCTTCAGATATT+TGG | + | chr6_3:80930659-80930678 | None:intergenic | 30.0% | |
GAACAATTTCACATGCAAAA+GGG | + | chr6_3:80930968-80930987 | None:intergenic | 30.0% | |
AGAACAATTTCACATGCAAA+AGG | + | chr6_3:80930969-80930988 | None:intergenic | 30.0% | |
ATTCACATCTGCTAAGTAAA+GGG | + | chr6_3:80930997-80931016 | None:intergenic | 30.0% | |
AATTCACATCTGCTAAGTAA+AGG | + | chr6_3:80930998-80931017 | None:intergenic | 30.0% | |
CTCACTTACATCAAATTCAT+TGG | - | chr6_3:80931199-80931218 | Msa0960810:intron | 30.0% | |
AACTATTCACTTTCTGCTAT+TGG | - | chr6_3:80931382-80931401 | Msa0960810:intron | 30.0% | |
!! | TATAAAGTGTTGGTGTTACA+AGG | + | chr6_3:80931494-80931513 | None:intergenic | 30.0% |
ACGACTTCAATATAAAGTGT+TGG | + | chr6_3:80931504-80931523 | None:intergenic | 30.0% | |
!! | AAATATAGGAAGCACTAACA+CGG | + | chr6_3:80931598-80931617 | None:intergenic | 30.0% |
!! | TCAAGACGGACTAAAAATAT+AGG | + | chr6_3:80931612-80931631 | None:intergenic | 30.0% |
! | GATGATCTTGTTTAAATTGC+AGG | - | chr6_3:80932061-80932080 | Msa0960810:intron | 30.0% |
ACATCAATAGAAGATTTCAG+AGG | - | chr6_3:80932170-80932189 | Msa0960810:intron | 30.0% | |
CATCAATAGAAGATTTCAGA+GGG | - | chr6_3:80932171-80932190 | Msa0960810:intron | 30.0% | |
TATTGTTTGGATGAGGAAAT+TGG | + | chr6_3:80932230-80932249 | None:intergenic | 30.0% | |
! | AATTGGACTTTTGCATGTGA+GGG | + | chr6_3:80926955-80926974 | None:intergenic | 35.0% |
TAAGCATTTGGAGGATTATC+TGG | + | chr6_3:80926991-80927010 | None:intergenic | 35.0% | |
CAAATGCTTACTCATCCAAA+CGG | - | chr6_3:80927001-80927020 | Msa0960810:three_prime_UTR | 35.0% | |
CTTTCTGCAAGATTCAGAAA+AGG | + | chr6_3:80927150-80927169 | None:intergenic | 35.0% | |
! | AGAATTGCTAGTTCTCATCT+GGG | + | chr6_3:80927212-80927231 | None:intergenic | 35.0% |
! | ATTTTGAACCCAACTCTACT+AGG | + | chr6_3:80927280-80927299 | None:intergenic | 35.0% |
TTAACAGTAACACTCAGATC+AGG | + | chr6_3:80927331-80927350 | None:intergenic | 35.0% | |
! | GATCTGAGTGTTACTGTTAA+TGG | - | chr6_3:80927331-80927350 | Msa0960810:intron | 35.0% |
ATGCCAAATCCATTTGTGAT+TGG | - | chr6_3:80927361-80927380 | Msa0960810:intron | 35.0% | |
! | GATCCAATCACAAATGGATT+TGG | + | chr6_3:80927367-80927386 | None:intergenic | 35.0% |
AATCCATTTGTGATTGGATC+AGG | - | chr6_3:80927367-80927386 | Msa0960810:intron | 35.0% | |
ATGAAAAGAGCCTTTGATGA+AGG | - | chr6_3:80927415-80927434 | Msa0960810:intron | 35.0% | |
!! | TTGAGTGTTTGATTTGTTGG+TGG | - | chr6_3:80927767-80927786 | Msa0960810:intron | 35.0% |
!! | TGAGTGTTTGATTTGTTGGT+GGG | - | chr6_3:80927768-80927787 | Msa0960810:intron | 35.0% |
AAATACACACAAGGGGAAAT+TGG | - | chr6_3:80928133-80928152 | Msa0960810:intron | 35.0% | |
!! | GGTTTTTAAGGGGTTTTTGT+TGG | + | chr6_3:80928178-80928197 | None:intergenic | 35.0% |
!! | GGTTTGTTTTTCAAAGGGTT+TGG | + | chr6_3:80928416-80928435 | None:intergenic | 35.0% |
!!! | AGGTCGGTTTGTTTTTCAAA+GGG | + | chr6_3:80928421-80928440 | None:intergenic | 35.0% |
! | GTTGGTATTTCCATCTTTTG+TGG | - | chr6_3:80928576-80928595 | Msa0960810:CDS | 35.0% |
!! | TTGTTTGTACCGATTAGGAA+AGG | - | chr6_3:80928644-80928663 | Msa0960810:intron | 35.0% |
!! | TGTTTGTACCGATTAGGAAA+GGG | - | chr6_3:80928645-80928664 | Msa0960810:intron | 35.0% |
GATCTGTATGATGCTAATTG+TGG | - | chr6_3:80928717-80928736 | Msa0960810:intron | 35.0% | |
AATGTGAGAGTGAGTTGTAA+AGG | - | chr6_3:80928801-80928820 | Msa0960810:intron | 35.0% | |
!! | TTGTAAAGGAGTCTTGTTCT+TGG | - | chr6_3:80928815-80928834 | Msa0960810:intron | 35.0% |
! | AATGTGTTTGAGAGTGTGTT+GGG | + | chr6_3:80928876-80928895 | None:intergenic | 35.0% |
TGGGATTCACATGATTTGAT+GGG | + | chr6_3:80928940-80928959 | None:intergenic | 35.0% | |
ATGGGATTCACATGATTTGA+TGG | + | chr6_3:80928941-80928960 | None:intergenic | 35.0% | |
GAATCCCATATAAATTTGGC+GGG | - | chr6_3:80928952-80928971 | Msa0960810:intron | 35.0% | |
TGTAATACAACTGAATGCAC+AGG | + | chr6_3:80929164-80929183 | None:intergenic | 35.0% | |
TTTGTTCAAATTCCTCTGTG+CGG | - | chr6_3:80929218-80929237 | Msa0960810:intron | 35.0% | |
AATGCAAATGGATCTGCAAA+AGG | - | chr6_3:80929610-80929629 | Msa0960810:intron | 35.0% | |
CAAAAGGAGAAATTATTGGG+TGG | - | chr6_3:80929626-80929645 | Msa0960810:intron | 35.0% | |
TCTTTCAACATGGTTTCAAG+CGG | + | chr6_3:80929679-80929698 | None:intergenic | 35.0% | |
AAGCGATGAGAATTCTATCA+GGG | + | chr6_3:80929726-80929745 | None:intergenic | 35.0% | |
AATTCTCATCGCTTCAATCA+TGG | - | chr6_3:80929732-80929751 | Msa0960810:intron | 35.0% | |
GAGTTGTAAGATGTGTTTCT+TGG | - | chr6_3:80929809-80929828 | Msa0960810:intron | 35.0% | |
! | TTACTTTGATGGTTCAATCG+CGG | + | chr6_3:80929952-80929971 | None:intergenic | 35.0% |
! | ACTACGTACAGTTACTTTGA+TGG | + | chr6_3:80929963-80929982 | None:intergenic | 35.0% |
! | ACGTAGTAAAAACTGGTTCA+AGG | - | chr6_3:80929976-80929995 | Msa0960810:CDS | 35.0% |
!!! | CAGGTCAGATTTTTCAAGAT+AGG | + | chr6_3:80930053-80930072 | None:intergenic | 35.0% |
ATAAACTTCTCATGTCCTCA+TGG | - | chr6_3:80930106-80930125 | Msa0960810:CDS | 35.0% | |
TTCTTGAAGAAGTTTGTGGA+TGG | - | chr6_3:80930176-80930195 | Msa0960810:intron | 35.0% | |
TTGTGGATGGATAAATGCAA+AGG | - | chr6_3:80930189-80930208 | Msa0960810:intron | 35.0% | |
! | AACGTAAAGCTTGTTTGGTT+GGG | + | chr6_3:80930935-80930954 | None:intergenic | 35.0% |
! | AGAAGAACGTAAAGCTTGTT+TGG | + | chr6_3:80930940-80930959 | None:intergenic | 35.0% |
AAATACAATCATGAGCGTCA+TGG | - | chr6_3:80931124-80931143 | Msa0960810:intron | 35.0% | |
AATACAATCATGAGCGTCAT+GGG | - | chr6_3:80931125-80931144 | Msa0960810:intron | 35.0% | |
TATTCACTTTCTGCTATTGG+TGG | - | chr6_3:80931385-80931404 | Msa0960810:intron | 35.0% | |
TGTAGTCACATTCAATCACT+TGG | - | chr6_3:80931569-80931588 | Msa0960810:intron | 35.0% | |
TACCATTGTCAGTATCAAGA+CGG | + | chr6_3:80931626-80931645 | None:intergenic | 35.0% | |
TGGTAGGATATTCTTTCCTT+TGG | - | chr6_3:80931641-80931660 | Msa0960810:intron | 35.0% | |
TCCCTTTAACAAGGAGAAAA+GGG | + | chr6_3:80931672-80931691 | None:intergenic | 35.0% | |
TTCCCTTTAACAAGGAGAAA+AGG | + | chr6_3:80931673-80931692 | None:intergenic | 35.0% | |
TATCAAGGATCAAATAGGGA+AGG | + | chr6_3:80931698-80931717 | None:intergenic | 35.0% | |
TTGATCCTTGATATTGAACG+TGG | - | chr6_3:80931705-80931724 | Msa0960810:intron | 35.0% | |
ATGAGATTCTTGCACTCAAT+AGG | - | chr6_3:80931900-80931919 | Msa0960810:intron | 35.0% | |
TGAGATTCTTGCACTCAATA+GGG | - | chr6_3:80931901-80931920 | Msa0960810:intron | 35.0% | |
!! | TTTTACTACACACACTGACT+TGG | - | chr6_3:80932396-80932415 | Msa0960810:CDS | 35.0% |
AGCAAGAAGCAATTAAGCAA+AGG | - | chr6_3:80932428-80932447 | Msa0960810:CDS | 35.0% | |
CAAAGGAAAGCCATAAAGAA+AGG | - | chr6_3:80932445-80932464 | Msa0960810:CDS | 35.0% | |
AGATTGCAAGCCTTTCTTTA+TGG | + | chr6_3:80932458-80932477 | None:intergenic | 35.0% | |
TGTGAAAGAAAGTGAAAGCA+TGG | - | chr6_3:80932504-80932523 | Msa0960810:five_prime_UTR | 35.0% | |
TATAGCTCTTGCAAATGAAG+TGG | - | chr6_3:80932580-80932599 | Msa0960810:five_prime_UTR | 35.0% | |
ACCATCATCATCAACTTTCA+TGG | - | chr6_3:80932734-80932753 | Msa0960810:five_prime_UTR | 35.0% | |
! | GAATTGGACTTTTGCATGTG+AGG | + | chr6_3:80926956-80926975 | None:intergenic | 40.0% |
TTGGATGAGTAAGCATTTGG+AGG | + | chr6_3:80927000-80927019 | None:intergenic | 40.0% | |
CGTTTGGATGAGTAAGCATT+TGG | + | chr6_3:80927003-80927022 | None:intergenic | 40.0% | |
AGGTGATTCTGAATCTGAGT+TGG | + | chr6_3:80927089-80927108 | None:intergenic | 40.0% | |
! | CAGAATTGCTAGTTCTCATC+TGG | + | chr6_3:80927213-80927232 | None:intergenic | 40.0% |
!!! | GGTTTTCATTGGATTGGTCT+AGG | - | chr6_3:80927239-80927258 | Msa0960810:CDS | 40.0% |
!! | TTCATTGGATTGGTCTAGGA+AGG | - | chr6_3:80927243-80927262 | Msa0960810:CDS | 40.0% |
ACAGTATAATTAGTCCCAGG+TGG | + | chr6_3:80927394-80927413 | None:intergenic | 40.0% | |
AAAGAGCCTTTGATGAAGGT+TGG | - | chr6_3:80927419-80927438 | Msa0960810:intron | 40.0% | |
AAGAGCCTTTGATGAAGGTT+GGG | - | chr6_3:80927420-80927439 | Msa0960810:intron | 40.0% | |
GAATACTGCATTGCAGATTG+CGG | - | chr6_3:80927597-80927616 | Msa0960810:intron | 40.0% | |
AATTGGTTGCCGTACAAACA+TGG | - | chr6_3:80928150-80928169 | Msa0960810:intron | 40.0% | |
TTGTTGGAGCCATGTTTGTA+CGG | + | chr6_3:80928162-80928181 | None:intergenic | 40.0% | |
!!! | TGGCATCTGTTTTTGTTGTG+CGG | + | chr6_3:80928348-80928367 | None:intergenic | 40.0% |
!!! | CAGGTCGGTTTGTTTTTCAA+AGG | + | chr6_3:80928422-80928441 | None:intergenic | 40.0% |
TTGTTCTTGGCTTCTTGCTA+TGG | - | chr6_3:80928828-80928847 | Msa0960810:intron | 40.0% | |
! | GAATGTGTTTGAGAGTGTGT+TGG | + | chr6_3:80928877-80928896 | None:intergenic | 40.0% |
CCATCCCGCCAAATTTATAT+GGG | + | chr6_3:80928959-80928978 | None:intergenic | 40.0% | |
CCATATAAATTTGGCGGGAT+GGG | - | chr6_3:80928957-80928976 | Msa0960810:intron | 40.0% | |
TTACACATTGTTCTCAACCG+CGG | - | chr6_3:80929179-80929198 | Msa0960810:intron | 40.0% | |
GAAGCGATGAGAATTCTATC+AGG | + | chr6_3:80929727-80929746 | None:intergenic | 40.0% | |
! | AAGAGTACAATAAAGCCGCA+TGG | - | chr6_3:80929755-80929774 | Msa0960810:intron | 40.0% |
AGAGTACAATAAAGCCGCAT+GGG | - | chr6_3:80929756-80929775 | Msa0960810:intron | 40.0% | |
ATCGATAGAGTCGAACAAAC+TGG | - | chr6_3:80929787-80929806 | Msa0960810:intron | 40.0% | |
GAGGTTGAACTATAACACGA+AGG | + | chr6_3:80929903-80929922 | None:intergenic | 40.0% | |
CTTGTTCAGGCCATTTAAAG+AGG | + | chr6_3:80929922-80929941 | None:intergenic | 40.0% | |
CTCTTTAAATGGCCTGAACA+AGG | - | chr6_3:80929920-80929939 | Msa0960810:CDS | 40.0% | |
AAAACCGAACCAGACATCAA+CGG | + | chr6_3:80930008-80930027 | None:intergenic | 40.0% | |
GCTCTTCTTGAAGAAGTTTG+TGG | - | chr6_3:80930172-80930191 | Msa0960810:intron | 40.0% | |
AAAGGCTACAGTTCCTGTTT+GGG | - | chr6_3:80930207-80930226 | Msa0960810:intron | 40.0% | |
AGTAGTACATCAGTTGCCAT+TGG | - | chr6_3:80930755-80930774 | Msa0960810:intron | 40.0% | |
AGTTGCCATTGGATCAAGAT+CGG | - | chr6_3:80930766-80930785 | Msa0960810:intron | 40.0% | |
ATTGTCCGATCTTGATCCAA+TGG | + | chr6_3:80930774-80930793 | None:intergenic | 40.0% | |
TCAGAATCTGGTGTACCATT+TGG | - | chr6_3:80930837-80930856 | Msa0960810:intron | 40.0% | |
! | ACGTAAAGCTTGTTTGGTTG+GGG | + | chr6_3:80930934-80930953 | None:intergenic | 40.0% |
! | GAACGTAAAGCTTGTTTGGT+TGG | + | chr6_3:80930936-80930955 | None:intergenic | 40.0% |
TTTCTGTTTGTAGCCAGCAA+GGG | - | chr6_3:80931064-80931083 | Msa0960810:intron | 40.0% | |
TTTGTTAGGTACTCAACTCC+AGG | - | chr6_3:80931271-80931290 | Msa0960810:intron | 40.0% | |
ATAACCTTCCCAAGTGCTAT+CGG | + | chr6_3:80931322-80931341 | None:intergenic | 40.0% | |
GCAGCTGAGTTTATTCTTCT+TGG | - | chr6_3:80931427-80931446 | Msa0960810:intron | 40.0% | |
GGTGATTCTTTCATCATACC+TGG | + | chr6_3:80931465-80931484 | None:intergenic | 40.0% | |
!! | GTTGGTGTTACAAGGCTAAA+AGG | + | chr6_3:80931486-80931505 | None:intergenic | 40.0% |
! | TGTCTGAAACTGACACATGT+CGG | + | chr6_3:80931536-80931555 | None:intergenic | 40.0% |
GTCTTGATACTGACAATGGT+AGG | - | chr6_3:80931625-80931644 | Msa0960810:intron | 40.0% | |
TTTAACAAGGAGAAAAGGGG+TGG | + | chr6_3:80931668-80931687 | None:intergenic | 40.0% | |
! | ACCCCTTTTCTCCTTGTTAA+AGG | - | chr6_3:80931667-80931686 | Msa0960810:intron | 40.0% |
CCCTTTAACAAGGAGAAAAG+GGG | + | chr6_3:80931671-80931690 | None:intergenic | 40.0% | |
! | CCCCTTTTCTCCTTGTTAAA+GGG | - | chr6_3:80931668-80931687 | Msa0960810:intron | 40.0% |
!! | GGAAGGTATTCCCTTTAACA+AGG | + | chr6_3:80931681-80931700 | None:intergenic | 40.0% |
AGTAACCAGGCAAAGAATCA+GGG | + | chr6_3:80931734-80931753 | None:intergenic | 40.0% | |
AAGTAACCAGGCAAAGAATC+AGG | + | chr6_3:80931735-80931754 | None:intergenic | 40.0% | |
TGATTCTTTGCCTGGTTACT+TGG | - | chr6_3:80931734-80931753 | Msa0960810:intron | 40.0% | |
GATTCTTTGCCTGGTTACTT+GGG | - | chr6_3:80931735-80931754 | Msa0960810:intron | 40.0% | |
! | CTAACGAAAGCATGCTTAGT+GGG | - | chr6_3:80931929-80931948 | Msa0960810:intron | 40.0% |
! | TAACGAAAGCATGCTTAGTG+GGG | - | chr6_3:80931930-80931949 | Msa0960810:intron | 40.0% |
! | TTTGATAGCCTGTTGCTCTT+CGG | - | chr6_3:80931983-80932002 | Msa0960810:intron | 40.0% |
TTTAAATTGCAGGTGTGCAC+TGG | - | chr6_3:80932071-80932090 | Msa0960810:intron | 40.0% | |
GCTTGCAATCTGATAAAGAC+TGG | - | chr6_3:80932467-80932486 | Msa0960810:CDS | 40.0% | |
CAATCTGATAAAGACTGGAC+AGG | - | chr6_3:80932472-80932491 | Msa0960810:exon | 40.0% | |
TCTTGCAAATGAAGTGGTGA+AGG | - | chr6_3:80932586-80932605 | Msa0960810:five_prime_UTR | 40.0% | |
!! | GCCATGAAAGTTGATGATGA+TGG | + | chr6_3:80932738-80932757 | None:intergenic | 40.0% |
AGAACTAGCAATTCTGCACC+TGG | - | chr6_3:80927217-80927236 | Msa0960810:CDS | 45.0% | |
GAACTAGCAATTCTGCACCT+GGG | - | chr6_3:80927218-80927237 | Msa0960810:CDS | 45.0% | |
! | TTCTGCACCTGGGTTTTCAT+TGG | - | chr6_3:80927228-80927247 | Msa0960810:CDS | 45.0% |
! | CACCTGGGTTTTCATTGGAT+TGG | - | chr6_3:80927233-80927252 | Msa0960810:CDS | 45.0% |
GACCAATCCAATGAAAACCC+AGG | + | chr6_3:80927238-80927257 | None:intergenic | 45.0% | |
ATGCACGTCCTAGTAGAGTT+GGG | - | chr6_3:80927269-80927288 | Msa0960810:CDS | 45.0% | |
GGACCTGATCCAATCACAAA+TGG | + | chr6_3:80927373-80927392 | None:intergenic | 45.0% | |
AGAGCCTTTGATGAAGGTTG+GGG | - | chr6_3:80927421-80927440 | Msa0960810:intron | 45.0% | |
ATTGCAGATTGCGGTCTTTG+CGG | - | chr6_3:80927606-80927625 | Msa0960810:intron | 45.0% | |
CTTATTAGTGCGTCTTGCAC+GGG | + | chr6_3:80928098-80928117 | None:intergenic | 45.0% | |
GCTTATTAGTGCGTCTTGCA+CGG | + | chr6_3:80928099-80928118 | None:intergenic | 45.0% | |
GCAAGACGCACTAATAAGCT+CGG | - | chr6_3:80928100-80928119 | Msa0960810:intron | 45.0% | |
CAAGACGCACTAATAAGCTC+GGG | - | chr6_3:80928101-80928120 | Msa0960810:intron | 45.0% | |
!! | GAACAAAAGAGTACTGACGC+TGG | - | chr6_3:80928216-80928235 | Msa0960810:CDS | 45.0% |
ATCTTCGGCTGCTCTTTAGA+CGG | + | chr6_3:80928299-80928318 | None:intergenic | 45.0% | |
TGGGCTCTTGGTTGTATCTT+CGG | + | chr6_3:80928314-80928333 | None:intergenic | 45.0% | |
!!! | ATCTGTTTTTGTTGTGCGGG+AGG | + | chr6_3:80928344-80928363 | None:intergenic | 45.0% |
!!! | GGCATCTGTTTTTGTTGTGC+GGG | + | chr6_3:80928347-80928366 | None:intergenic | 45.0% |
!! | GTCTTGGAGGGTTTTGATCT+TGG | + | chr6_3:80928368-80928387 | None:intergenic | 45.0% |
CTGTTCACATGTGTCTTGGA+GGG | + | chr6_3:80928380-80928399 | None:intergenic | 45.0% | |
! | TTTTCAAAGGGTTTGGCTGC+TGG | + | chr6_3:80928409-80928428 | None:intergenic | 45.0% |
CAATCTTCCTTCTGCTGTCT+CGG | + | chr6_3:80928451-80928470 | None:intergenic | 45.0% | |
!!! | GTGTTGATGTTTTGGTGGCA+GGG | + | chr6_3:80928488-80928507 | None:intergenic | 45.0% |
!!! | AGTGTTGATGTTTTGGTGGC+AGG | + | chr6_3:80928489-80928508 | None:intergenic | 45.0% |
TCGCATGACCCTTTCCTAAT+CGG | + | chr6_3:80928656-80928675 | None:intergenic | 45.0% | |
CCCATATAAATTTGGCGGGA+TGG | - | chr6_3:80928956-80928975 | Msa0960810:intron | 45.0% | |
CCCATCCCGCCAAATTTATA+TGG | + | chr6_3:80928960-80928979 | None:intergenic | 45.0% | |
GCAAACAACTCGCTGTATCT+CGG | - | chr6_3:80929096-80929115 | Msa0960810:intron | 45.0% | |
GCTCTAGCACTATAGAGTAG+CGG | + | chr6_3:80929332-80929351 | None:intergenic | 45.0% | |
ATGTAACTCCTCGTTATGCC+CGG | - | chr6_3:80929578-80929597 | Msa0960810:intron | 45.0% | |
AACCGAACTAGACATCGATC+CGG | - | chr6_3:80929872-80929891 | Msa0960810:CDS | 45.0% | |
!! | TCGCGGTTTTATCCTTGTTC+AGG | + | chr6_3:80929935-80929954 | None:intergenic | 45.0% |
AAACCGAACCAGACATCAAC+GGG | + | chr6_3:80930007-80930026 | None:intergenic | 45.0% | |
CAAAGGCTACAGTTCCTGTT+TGG | - | chr6_3:80930206-80930225 | Msa0960810:intron | 45.0% | |
TCGAGATCAGATGGTCCAAA+TGG | + | chr6_3:80930855-80930874 | None:intergenic | 45.0% | |
GTTGTTGGATCGAGATCAGA+TGG | + | chr6_3:80930864-80930883 | None:intergenic | 45.0% | |
! | CGTAAAGCTTGTTTGGTTGG+GGG | + | chr6_3:80930933-80930952 | None:intergenic | 45.0% |
GTTTCTGTTTGTAGCCAGCA+AGG | - | chr6_3:80931063-80931082 | Msa0960810:intron | 45.0% | |
! | GCTTTTGCAGAATAACCACC+TGG | + | chr6_3:80931292-80931311 | None:intergenic | 45.0% |
CAGTTCATCCGATAGCACTT+GGG | - | chr6_3:80931311-80931330 | Msa0960810:intron | 45.0% | |
! | TCTTGGTGCAAATACTGTCC+AGG | - | chr6_3:80931444-80931463 | Msa0960810:intron | 45.0% |
TGTGACTACATGTGTCGTGT+CGG | + | chr6_3:80931559-80931578 | None:intergenic | 45.0% | |
GTCCGTCTTGATACTGACAA+TGG | - | chr6_3:80931621-80931640 | Msa0960810:intron | 45.0% | |
GGGATCCACGTTCAATATCA+AGG | + | chr6_3:80931713-80931732 | None:intergenic | 45.0% | |
GTAACCAGGCAAAGAATCAG+GGG | + | chr6_3:80931733-80931752 | None:intergenic | 45.0% | |
ACCACTATTCCCAAGTAACC+AGG | + | chr6_3:80931747-80931766 | None:intergenic | 45.0% | |
CCACTAAGCATGCTTTCGTT+AGG | + | chr6_3:80931931-80931950 | None:intergenic | 45.0% | |
! | CCTAACGAAAGCATGCTTAG+TGG | - | chr6_3:80931928-80931947 | Msa0960810:intron | 45.0% |
GATAAAGACTGGACAGGAGA+TGG | - | chr6_3:80932478-80932497 | Msa0960810:exon | 45.0% | |
!!! | TATTTTATTTTTTTTTGAAT+TGG | - | chr6_3:80928051-80928070 | Msa0960810:intron | 5.0% |
CATGCACGTCCTAGTAGAGT+TGG | - | chr6_3:80927268-80927287 | Msa0960810:CDS | 50.0% | |
TGATTGGATCAGGTCCACCT+GGG | - | chr6_3:80927377-80927396 | Msa0960810:intron | 50.0% | |
ACGCACTAATAAGCTCGGGT+GGG | - | chr6_3:80928105-80928124 | Msa0960810:intron | 50.0% | |
GCTGTTCACATGTGTCTTGG+AGG | + | chr6_3:80928381-80928400 | None:intergenic | 50.0% | |
!!! | GTGGCAGGGTGGTTTTGTTT+TGG | + | chr6_3:80928474-80928493 | None:intergenic | 50.0% |
!!! | TTGATGTTTTGGTGGCAGGG+TGG | + | chr6_3:80928485-80928504 | None:intergenic | 50.0% |
! | ACAGCGAGTTGTTTGCTGCA+GGG | + | chr6_3:80929092-80929111 | None:intergenic | 50.0% |
! | TACAGCGAGTTGTTTGCTGC+AGG | + | chr6_3:80929093-80929112 | None:intergenic | 50.0% |
ACAACTCGCTGTATCTCGGT+TGG | - | chr6_3:80929100-80929119 | Msa0960810:intron | 50.0% | |
CAACTCGCTGTATCTCGGTT+GGG | - | chr6_3:80929101-80929120 | Msa0960810:intron | 50.0% | |
AACTCGCTGTATCTCGGTTG+GGG | - | chr6_3:80929102-80929121 | Msa0960810:intron | 50.0% | |
AACTGAATGCACAGGAGACG+AGG | + | chr6_3:80929156-80929175 | None:intergenic | 50.0% | |
ACCGCGGATCGCAAAAATAG+CGG | - | chr6_3:80929195-80929214 | Msa0960810:intron | 50.0% | |
!!! | ACCGCTATTTTTGCGATCCG+CGG | + | chr6_3:80929199-80929218 | None:intergenic | 50.0% |
ATTTGCATTAGCCCGTAGCC+GGG | + | chr6_3:80929599-80929618 | None:intergenic | 50.0% | |
CATTTGCATTAGCCCGTAGC+CGG | + | chr6_3:80929600-80929619 | None:intergenic | 50.0% | |
GTACAATAAAGCCGCATGGG+AGG | - | chr6_3:80929759-80929778 | Msa0960810:intron | 50.0% | |
ATCGATAAGCTCCTCCCATG+CGG | + | chr6_3:80929773-80929792 | None:intergenic | 50.0% | |
CTATAACACGAAGGTCTCGC+CGG | + | chr6_3:80929894-80929913 | None:intergenic | 50.0% | |
CTCATGTCCTCATGGTATGC+CGG | - | chr6_3:80930114-80930133 | Msa0960810:intron | 50.0% | |
!! | GCAAAATGGGTGCTGCTGTT+GGG | - | chr6_3:80930140-80930159 | Msa0960810:intron | 50.0% |
GGAGTCATCTTAGCCCAAAC+AGG | + | chr6_3:80930223-80930242 | None:intergenic | 50.0% | |
! | CTACTGACTGCGTGAATGTG+TGG | + | chr6_3:80930740-80930759 | None:intergenic | 50.0% |
GTCAGCACAACTGTGGTTGT+TGG | + | chr6_3:80930879-80930898 | None:intergenic | 50.0% | |
TCATGCAGTCAGCACAACTG+TGG | + | chr6_3:80930886-80930905 | None:intergenic | 50.0% | |
GAACTTAGAGCAACCCTTGC+TGG | + | chr6_3:80931080-80931099 | None:intergenic | 50.0% | |
! | GCAAGGGTTGCTCTAAGTTC+AGG | - | chr6_3:80931080-80931099 | Msa0960810:intron | 50.0% |
! | TGCTCTAAGTTCAGGATGCG+AGG | - | chr6_3:80931088-80931107 | Msa0960810:intron | 50.0% |
! | GCTCTAAGTTCAGGATGCGA+GGG | - | chr6_3:80931089-80931108 | Msa0960810:intron | 50.0% |
GTTAGGTACTCAACTCCAGG+TGG | - | chr6_3:80931274-80931293 | Msa0960810:intron | 50.0% | |
GCAGTTCATCCGATAGCACT+TGG | - | chr6_3:80931310-80931329 | Msa0960810:intron | 50.0% | |
TCATCCGATAGCACTTGGGA+AGG | - | chr6_3:80931315-80931334 | Msa0960810:intron | 50.0% | |
!! | GCTATTGGTGGTGTTGAGAC+TGG | - | chr6_3:80931397-80931416 | Msa0960810:intron | 50.0% |
!! | ATTGGTGGTGTTGAGACTGG+TGG | - | chr6_3:80931400-80931419 | Msa0960810:intron | 50.0% |
GCCTGGTTACTTGGGAATAG+TGG | - | chr6_3:80931743-80931762 | Msa0960810:intron | 50.0% | |
GTTCAAGACCGAAGAGCAAC+AGG | + | chr6_3:80931994-80932013 | None:intergenic | 50.0% | |
GTTGCTCTTCGGTCTTGAAC+AGG | - | chr6_3:80931994-80932013 | Msa0960810:intron | 50.0% | |
GTCTTGAACAGGATTGTCCC+TGG | - | chr6_3:80932005-80932024 | Msa0960810:intron | 50.0% | |
TGAACAGGATTGTCCCTGGT+AGG | - | chr6_3:80932009-80932028 | Msa0960810:intron | 50.0% | |
TCAGACGTATCCTCCTACCA+GGG | + | chr6_3:80932025-80932044 | None:intergenic | 50.0% | |
! | TGCACTGGCGTTATGATGCA+TGG | - | chr6_3:80932086-80932105 | Msa0960810:intron | 50.0% |
GGCGTTATGATGCATGGCTA+TGG | - | chr6_3:80932092-80932111 | Msa0960810:intron | 50.0% | |
!! | CACACACTGACTTGGTGCAA+AGG | - | chr6_3:80932404-80932423 | Msa0960810:CDS | 50.0% |
GTGATTGGATCAGGTCCACC+TGG | - | chr6_3:80927376-80927395 | Msa0960810:intron | 55.0% | |
GCCTTTGATGAAGGTTGGGG+CGG | - | chr6_3:80927424-80927443 | Msa0960810:intron | 55.0% | |
ACCGCCCCAACCTTCATCAA+AGG | + | chr6_3:80927428-80927447 | None:intergenic | 55.0% | |
GACGCACTAATAAGCTCGGG+TGG | - | chr6_3:80928104-80928123 | Msa0960810:intron | 55.0% | |
! | TTGACGCAGGGGTATGCATG+TGG | + | chr6_3:80928259-80928278 | None:intergenic | 55.0% |
ATACCCCTGCGTCAACACCA+AGG | - | chr6_3:80928264-80928283 | Msa0960810:CDS | 55.0% | |
TGCTCTTTAGACGGTTGGGG+CGG | + | chr6_3:80928290-80928309 | None:intergenic | 55.0% | |
GGCTGCTCTTTAGACGGTTG+GGG | + | chr6_3:80928293-80928312 | None:intergenic | 55.0% | |
CGGCTGCTCTTTAGACGGTT+GGG | + | chr6_3:80928294-80928313 | None:intergenic | 55.0% | |
TCGGCTGCTCTTTAGACGGT+TGG | + | chr6_3:80928295-80928314 | None:intergenic | 55.0% | |
TTGTGCGGGAGGCTTCTGAT+GGG | + | chr6_3:80928333-80928352 | None:intergenic | 55.0% | |
GGCGCTGTTCACATGTGTCT+TGG | + | chr6_3:80928384-80928403 | None:intergenic | 55.0% | |
TCTTCCTTCTGCTGTCTCGG+TGG | + | chr6_3:80928448-80928467 | None:intergenic | 55.0% | |
AGGGTCATGCGACATGCAAC+TGG | - | chr6_3:80928664-80928683 | Msa0960810:intron | 55.0% | |
!! | GCTGCAGGGCTGGTTGATTA+AGG | + | chr6_3:80929078-80929097 | None:intergenic | 55.0% |
TATAGCACACTGCCGCACAG+AGG | + | chr6_3:80929233-80929252 | None:intergenic | 55.0% | |
! | CGGCTACGGGCTAATGCAAA+TGG | - | chr6_3:80929598-80929617 | Msa0960810:intron | 55.0% |
CGCCGGATCGATGTCTAGTT+CGG | + | chr6_3:80929877-80929896 | None:intergenic | 55.0% | |
AGGTTCAGCCCGTTGATGTC+TGG | - | chr6_3:80929996-80930015 | Msa0960810:CDS | 55.0% | |
CAGCCCGTTGATGTCTGGTT+CGG | - | chr6_3:80930001-80930020 | Msa0960810:CDS | 55.0% | |
TGGTATGCCGGAGCGCAAAA+TGG | - | chr6_3:80930126-80930145 | Msa0960810:intron | 55.0% | |
GGTATGCCGGAGCGCAAAAT+GGG | - | chr6_3:80930127-80930146 | Msa0960810:intron | 55.0% | |
!! | CGCAAAATGGGTGCTGCTGT+TGG | - | chr6_3:80930139-80930158 | Msa0960810:intron | 55.0% |
ATTGCCAACCCCTCAACGCA+AGG | + | chr6_3:80931179-80931198 | None:intergenic | 55.0% | |
GGAGAAAAGGGGTGGACCAA+AGG | + | chr6_3:80931660-80931679 | None:intergenic | 55.0% | |
GGATCCCCTGATTCTTTGCC+TGG | - | chr6_3:80931726-80931745 | Msa0960810:intron | 55.0% | |
ACAGGATTGTCCCTGGTAGG+AGG | - | chr6_3:80932012-80932031 | Msa0960810:intron | 55.0% | |
CTCAGACGTATCCTCCTACC+AGG | + | chr6_3:80932026-80932045 | None:intergenic | 55.0% | |
TGCGTCTTGCACGGGCTTGT+TGG | + | chr6_3:80928090-80928109 | None:intergenic | 60.0% | |
!! | GGAGGCTTCTGATGGGCTCT+TGG | + | chr6_3:80928326-80928345 | None:intergenic | 60.0% |
GTTGTGCGGGAGGCTTCTGA+TGG | + | chr6_3:80928334-80928353 | None:intergenic | 60.0% | |
CAAAGGGTTTGGCTGCTGGC+AGG | + | chr6_3:80928405-80928424 | None:intergenic | 60.0% | |
CTGTCTCGGTGGTGACAGGT+CGG | + | chr6_3:80928437-80928456 | None:intergenic | 60.0% | |
TCTGCTGTCTCGGTGGTGAC+AGG | + | chr6_3:80928441-80928460 | None:intergenic | 60.0% | |
GTCACCACCGAGACAGCAGA+AGG | - | chr6_3:80928441-80928460 | Msa0960810:intron | 60.0% | |
! | CGAGTTGTTTGCTGCAGGGC+TGG | + | chr6_3:80929088-80929107 | None:intergenic | 60.0% |
CTCCTCGTTATGCCCGGCTA+CGG | - | chr6_3:80929584-80929603 | Msa0960810:intron | 60.0% | |
TCCTCGTTATGCCCGGCTAC+GGG | - | chr6_3:80929585-80929604 | Msa0960810:intron | 60.0% | |
TTGCGCTCCGGCATACCATG+AGG | + | chr6_3:80930124-80930143 | None:intergenic | 60.0% | |
! | GCAGCACCCATTTTGCGCTC+CGG | + | chr6_3:80930136-80930155 | None:intergenic | 60.0% |
ACGTCCTGAGCCTTGCGTTG+AGG | - | chr6_3:80931166-80931185 | Msa0960810:intron | 60.0% | |
CGTCCTGAGCCTTGCGTTGA+GGG | - | chr6_3:80931167-80931186 | Msa0960810:intron | 60.0% | |
GTCCTGAGCCTTGCGTTGAG+GGG | - | chr6_3:80931168-80931187 | Msa0960810:intron | 60.0% | |
AACCCCTCAACGCAAGGCTC+AGG | + | chr6_3:80931173-80931192 | None:intergenic | 60.0% | |
TGAGCCTTGCGTTGAGGGGT+TGG | - | chr6_3:80931172-80931191 | Msa0960810:intron | 60.0% | |
!! | CGGCCTTGGTGTTGACGCAG+GGG | + | chr6_3:80928270-80928289 | None:intergenic | 65.0% |
!! | GCGGCCTTGGTGTTGACGCA+GGG | + | chr6_3:80928271-80928290 | None:intergenic | 65.0% |
TTAGACGGTTGGGGCGGCCT+TGG | + | chr6_3:80928284-80928303 | None:intergenic | 65.0% | |
!! | GGCGGCCTTGGTGTTGACGC+AGG | + | chr6_3:80928272-80928291 | None:intergenic | 70.0% |
GCCCGTAGCCGGGCATAACG+AGG | + | chr6_3:80929589-80929608 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 80926886 | 80932790 | 80926886 | ID=Msa0960810;Name=Msa0960810 |
chr6_3 | mRNA | 80926886 | 80932790 | 80926886 | ID=Msa0960810-mRNA-1;Parent=Msa0960810;Name=Msa0960810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=304|1|1|1|1|1|7|253|424 |
chr6_3 | exon | 80926886 | 80927295 | 80926886 | ID=Msa0960810-mRNA-1:exon:14522;Parent=Msa0960810-mRNA-1 |
chr6_3 | exon | 80927484 | 80927593 | 80927484 | ID=Msa0960810-mRNA-1:exon:14521;Parent=Msa0960810-mRNA-1 |
chr6_3 | exon | 80928211 | 80928397 | 80928211 | ID=Msa0960810-mRNA-1:exon:14520;Parent=Msa0960810-mRNA-1 |
chr6_3 | exon | 80928487 | 80928599 | 80928487 | ID=Msa0960810-mRNA-1:exon:14519;Parent=Msa0960810-mRNA-1 |
chr6_3 | exon | 80929412 | 80929582 | 80929412 | ID=Msa0960810-mRNA-1:exon:14518;Parent=Msa0960810-mRNA-1 |
chr6_3 | exon | 80929863 | 80930126 | 80929863 | ID=Msa0960810-mRNA-1:exon:14517;Parent=Msa0960810-mRNA-1 |
chr6_3 | exon | 80932214 | 80932790 | 80932214 | ID=Msa0960810-mRNA-1:exon:14516;Parent=Msa0960810-mRNA-1 |
chr6_3 | five_prime_UTR | 80932487 | 80932790 | 80932487 | ID=Msa0960810-mRNA-1:five_prime_utr;Parent=Msa0960810-mRNA-1 |
chr6_3 | CDS | 80932214 | 80932486 | 80932214 | ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1 |
chr6_3 | CDS | 80929863 | 80930126 | 80929863 | ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1 |
chr6_3 | CDS | 80929412 | 80929582 | 80929412 | ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1 |
chr6_3 | CDS | 80928487 | 80928599 | 80928487 | ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1 |
chr6_3 | CDS | 80928211 | 80928397 | 80928211 | ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1 |
chr6_3 | CDS | 80927484 | 80927593 | 80927484 | ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1 |
chr6_3 | CDS | 80927139 | 80927295 | 80927139 | ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1 |
chr6_3 | three_prime_UTR | 80926886 | 80927138 | 80926886 | ID=Msa0960810-mRNA-1:three_prime_utr;Parent=Msa0960810-mRNA-1 |
Gene Sequence |
Protein sequence |