AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0960810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960810 MtrunA17_Chr6g0479191 95.519 424 19 0 1 424 1 424 0.0 847
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960810 AT3G17810.1 80.653 429 75 4 1 424 1 426 0.0 713

Find 111 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTGAGTGTTACTGTTAA+TGG 0.180819 6_3:-80932323 Msa0960810:CDS
GCAGCTGAGTTTATTCTTCT+TGG 0.200783 6_3:-80928227 Msa0960810:CDS
AGATTGCAAGCCTTTCTTTA+TGG 0.204573 6_3:+80927199 None:intergenic
TATTTATAAGATTATGATTA+AGG 0.216600 6_3:+80932737 None:intergenic
GGTAATATTATAATATTATA+TGG 0.224296 6_3:+80932589 None:intergenic
AACTATTCACTTTCTGCTAT+TGG 0.259287 6_3:-80928272 Msa0960810:CDS
TGGTATGCCGGAGCGCAAAA+TGG 0.263705 6_3:-80929528 Msa0960810:CDS
CAGAATTGCTAGTTCTCATC+TGG 0.278551 6_3:+80932444 None:intergenic
TAAGCATTTGGAGGATTATC+TGG 0.282254 6_3:+80932666 None:intergenic
CTGGAAATATTGTAAAGAAT+TGG 0.307064 6_3:+80932685 None:intergenic
TCTGCAAAAGGAGAAATTAT+TGG 0.311163 6_3:-80930032 Msa0960810:CDS
CAAAGGCTACAGTTCCTGTT+TGG 0.312936 6_3:-80929448 Msa0960810:CDS
CGTTTGGATGAGTAAGCATT+TGG 0.341817 6_3:+80932654 None:intergenic
ACCATCATCATCAACTTTCA+TGG 0.353220 6_3:-80926920 Msa0960810:three_prime_UTR
GAACTTAGAGCAACCCTTGC+TGG 0.357378 6_3:+80928577 None:intergenic
CGTCCTGAGCCTTGCGTTGA+GGG 0.358604 6_3:-80928487 Msa0960810:CDS
GATCCAATCACAAATGGATT+TGG 0.372017 6_3:+80932290 None:intergenic
GCTCTTCTTGAAGAAGTTTG+TGG 0.375842 6_3:-80929482 Msa0960810:CDS
CGCAAAATGGGTGCTGCTGT+TGG 0.388137 6_3:-80929515 Msa0960810:CDS
AAGAGCCTTTGATGAAGGTT+GGG 0.391243 6_3:-80932234 Msa0960810:CDS
GCTATTGGTGGTGTTGAGAC+TGG 0.396156 6_3:-80928257 Msa0960810:CDS
GAAGCGATGAGAATTCTATC+AGG 0.397731 6_3:+80929930 None:intergenic
CTGCAAAAGGAGAAATTATT+GGG 0.403065 6_3:-80930031 Msa0960810:CDS
ATGCCAAATCCATTTGTGAT+TGG 0.408143 6_3:-80932293 Msa0960810:CDS
AAAGGCTACAGTTCCTGTTT+GGG 0.415981 6_3:-80929447 Msa0960810:CDS
AGAGTTTAAGCAATTAAAAG+AGG 0.416736 6_3:-80929958 Msa0960810:CDS
TGTAATTATGAATCACCGTT+TGG 0.417860 6_3:+80932638 None:intergenic
CAATTCACAATATTCTTAGA+AGG 0.427150 6_3:+80927006 None:intergenic
CGGCTACGGGCTAATGCAAA+TGG 0.429884 6_3:-80930056 Msa0960810:CDS
AATCCATTTGTGATTGGATC+AGG 0.430806 6_3:-80932287 Msa0960810:CDS
CTCTGAAATATCAGTTATGT+TGG 0.442627 6_3:+80929412 None:intergenic
GCAAGGGTTGCTCTAAGTTC+AGG 0.458325 6_3:-80928574 Msa0960810:CDS
GGAGTCATCTTAGCCCAAAC+AGG 0.459815 6_3:+80929434 None:intergenic
TTCATTGGATTGGTCTAGGA+AGG 0.462264 6_3:-80932411 Msa0960810:CDS
ATCGATAGAGTCGAACAAAC+TGG 0.464817 6_3:-80929867 Msa0960810:CDS
AACCCCTCAACGCAAGGCTC+AGG 0.469526 6_3:+80928484 None:intergenic
TATTCACTTTCTGCTATTGG+TGG 0.475181 6_3:-80928269 Msa0960810:CDS
CATGCACGTCCTAGTAGAGT+TGG 0.475768 6_3:-80932386 Msa0960810:CDS
GGTATGCCGGAGCGCAAAAT+GGG 0.481117 6_3:-80929527 Msa0960810:CDS
TGTGAAAGAAAGTGAAAGCA+TGG 0.486791 6_3:-80927150 Msa0960810:CDS
TCTTGGTGCAAATACTGTCC+AGG 0.487074 6_3:-80928210 Msa0960810:intron
GCAAAATGGGTGCTGCTGTT+GGG 0.487510 6_3:-80929514 Msa0960810:CDS
TTTAAATTGCAGGTGTGCAC+TGG 0.491165 6_3:-80927583 Msa0960810:intron
AATTCTCATCGCTTCAATCA+TGG 0.491371 6_3:-80929922 Msa0960810:CDS
GGACCTGATCCAATCACAAA+TGG 0.496107 6_3:+80932284 None:intergenic
AAAGAGCCTTTGATGAAGGT+TGG 0.497584 6_3:-80932235 Msa0960810:CDS
CATTTGCATTAGCCCGTAGC+CGG 0.499385 6_3:+80930057 None:intergenic
CAAAGGAAAGCCATAAAGAA+AGG 0.501819 6_3:-80927209 Msa0960810:CDS
TTGGATGAGTAAGCATTTGG+AGG 0.501821 6_3:+80932657 None:intergenic
ATGCACGTCCTAGTAGAGTT+GGG 0.505524 6_3:-80932385 Msa0960810:CDS
TCTGAAATATCAGTTATGTT+GGG 0.506589 6_3:+80929413 None:intergenic
GTGATTGGATCAGGTCCACC+TGG 0.507691 6_3:-80932278 Msa0960810:CDS
TTTGTTAGGTACTCAACTCC+AGG 0.511040 6_3:-80928383 Msa0960810:intron
GCAGTTCATCCGATAGCACT+TGG 0.512671 6_3:-80928344 Msa0960810:CDS
GGCGTTATGATGCATGGCTA+TGG 0.516244 6_3:-80927562 Msa0960810:CDS
CTTTCTGCAAGATTCAGAAA+AGG 0.520638 6_3:+80932507 None:intergenic
CTCATGTCCTCATGGTATGC+CGG 0.520822 6_3:-80929540 Msa0960810:CDS
AATACAATCATGAGCGTCAT+GGG 0.525192 6_3:-80928529 Msa0960810:CDS
AAATACAATCATGAGCGTCA+TGG 0.529657 6_3:-80928530 Msa0960810:CDS
GCTTGCAATCTGATAAAGAC+TGG 0.530476 6_3:-80927187 Msa0960810:CDS
ACGTCCTGAGCCTTGCGTTG+AGG 0.531564 6_3:-80928488 Msa0960810:CDS
AGAACTAGCAATTCTGCACC+TGG 0.533573 6_3:-80932437 Msa0960810:CDS
ATAACCTTCCCAAGTGCTAT+CGG 0.533776 6_3:+80928335 None:intergenic
ATGTAACTCCTCGTTATGCC+CGG 0.535192 6_3:-80930076 Msa0960810:CDS
GATAAAGACTGGACAGGAGA+TGG 0.535548 6_3:-80927176 Msa0960810:CDS
AATGCAAATGGATCTGCAAA+AGG 0.536497 6_3:-80930044 Msa0960810:CDS
CAATCTGATAAAGACTGGAC+AGG 0.536629 6_3:-80927182 Msa0960810:CDS
TTCTTGAAGAAGTTTGTGGA+TGG 0.536809 6_3:-80929478 Msa0960810:CDS
ATGAAAAGAGCCTTTGATGA+AGG 0.541144 6_3:-80932239 Msa0960810:CDS
AGAGCCTTTGATGAAGGTTG+GGG 0.541495 6_3:-80932233 Msa0960810:CDS
GTTTCTGTTTGTAGCCAGCA+AGG 0.542946 6_3:-80928591 Msa0960810:intron
TGCTCTAAGTTCAGGATGCG+AGG 0.553949 6_3:-80928566 Msa0960810:CDS
ATAAACTTCTCATGTCCTCA+TGG 0.555561 6_3:-80929548 Msa0960810:CDS
TCTTGCAAATGAAGTGGTGA+AGG 0.566366 6_3:-80927068 Msa0960810:three_prime_UTR
TGCACTGGCGTTATGATGCA+TGG 0.570814 6_3:-80927568 Msa0960810:CDS
CACACACTGACTTGGTGCAA+AGG 0.573029 6_3:-80927250 Msa0960810:CDS
TTTCTGTTTGTAGCCAGCAA+GGG 0.576556 6_3:-80928590 Msa0960810:intron
TTAACAGTAACACTCAGATC+AGG 0.578177 6_3:+80932326 None:intergenic
AGGTGATTCTGAATCTGAGT+TGG 0.586105 6_3:+80932568 None:intergenic
ATAACAGTATAATTAGTCCC+AGG 0.587291 6_3:+80932260 None:intergenic
GTCCTGAGCCTTGCGTTGAG+GGG 0.588189 6_3:-80928486 Msa0960810:intron
TATAGCTCTTGCAAATGAAG+TGG 0.590555 6_3:-80927074 Msa0960810:three_prime_UTR
ACCGCCCCAACCTTCATCAA+AGG 0.598376 6_3:+80932229 None:intergenic
ATTGCCAACCCCTCAACGCA+AGG 0.601265 6_3:+80928478 None:intergenic
TGATTGGATCAGGTCCACCT+GGG 0.601497 6_3:-80932277 Msa0960810:CDS
CATCAATAGAAGATTTCAGA+GGG 0.602379 6_3:-80927483 Msa0960810:intron
GCCTTTGATGAAGGTTGGGG+CGG 0.602777 6_3:-80932230 Msa0960810:CDS
AGAGTACAATAAAGCCGCAT+GGG 0.602901 6_3:-80929898 Msa0960810:CDS
CAACATAACTGATATTTCAG+AGG 0.605943 6_3:-80929411 Msa0960810:intron
AGAATTGCTAGTTCTCATCT+GGG 0.607718 6_3:+80932445 None:intergenic
AGCAAGAAGCAATTAAGCAA+AGG 0.608908 6_3:-80927226 Msa0960810:CDS
TCTTTCAACATGGTTTCAAG+CGG 0.612116 6_3:+80929978 None:intergenic
AAGAGTACAATAAAGCCGCA+TGG 0.612930 6_3:-80929899 Msa0960810:CDS
CAAATGCTTACTCATCCAAA+CGG 0.613014 6_3:-80932653 Msa0960810:five_prime_UTR
TTGTGGATGGATAAATGCAA+AGG 0.617242 6_3:-80929465 Msa0960810:CDS
ACATCAATAGAAGATTTCAG+AGG 0.619025 6_3:-80927484 Msa0960810:CDS
CAGTTCATCCGATAGCACTT+GGG 0.631187 6_3:-80928343 Msa0960810:CDS
GTACAATAAAGCCGCATGGG+AGG 0.631532 6_3:-80929895 Msa0960810:CDS
TCATCCGATAGCACTTGGGA+AGG 0.632133 6_3:-80928339 Msa0960810:CDS
GCCCGTAGCCGGGCATAACG+AGG 0.632333 6_3:+80930068 None:intergenic
ATCGATAAGCTCCTCCCATG+CGG 0.636350 6_3:+80929884 None:intergenic
AAGCGATGAGAATTCTATCA+GGG 0.636759 6_3:+80929931 None:intergenic
TTGCTTAAACTCTTTCAACA+TGG 0.637483 6_3:+80929968 None:intergenic
GCTCTAAGTTCAGGATGCGA+GGG 0.640142 6_3:-80928565 Msa0960810:CDS
GAACTAGCAATTCTGCACCT+GGG 0.647996 6_3:-80932436 Msa0960810:CDS
GCCATGAAAGTTGATGATGA+TGG 0.648057 6_3:+80926919 None:intergenic
CAAAAGGAGAAATTATTGGG+TGG 0.669484 6_3:-80930028 Msa0960810:CDS
ATTGGTGGTGTTGAGACTGG+TGG 0.671887 6_3:-80928254 Msa0960810:CDS
GACCAATCCAATGAAAACCC+AGG 0.680757 6_3:+80932419 None:intergenic
ACAGTATAATTAGTCCCAGG+TGG 0.689168 6_3:+80932263 None:intergenic
GTTAGGTACTCAACTCCAGG+TGG 0.710353 6_3:-80928380 Msa0960810:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGATTTTTAATTTTTAGT+TGG + chr6_3:80926896-80926915 None:intergenic 10.0%
!! TATTTATAAGATTATGATTA+AGG + chr6_3:80926920-80926939 None:intergenic 10.0%
!! GGTAATATTATAATATTATA+TGG + chr6_3:80927068-80927087 None:intergenic 10.0%
!! ATATTTCATATTTCATTATA+AGG + chr6_3:80929398-80929417 None:intergenic 10.0%
!!! AAATTTTGAATAAAAATTAC+AGG - chr6_3:80932359-80932378 Msa0960810:CDS 10.0%
!!! AATTTTGAATAAAAATTACA+GGG - chr6_3:80932360-80932379 Msa0960810:CDS 10.0%
!!! TCAATTTTTTCCTTAAAAAA+TGG - chr6_3:80927171-80927190 Msa0960810:CDS 15.0%
!!! TTATTGGTTAAAATTCATAT+GGG + chr6_3:80928984-80929003 None:intergenic 15.0%
!!! TTTATTGGTTAAAATTCATA+TGG + chr6_3:80928985-80929004 None:intergenic 15.0%
!!! ATTTGATTATTTGTTTTGTT+AGG - chr6_3:80929528-80929547 Msa0960810:CDS 15.0%
!!! AAAAGAATATCAAAATTTTC+AGG + chr6_3:80930072-80930091 None:intergenic 15.0%
!!! GAAAATTTTGATATTCTTTT+AGG - chr6_3:80930072-80930091 Msa0960810:CDS 15.0%
!!! TGAAAAACAAATATCATTTT+TGG + chr6_3:80930465-80930484 None:intergenic 15.0%
!!! TTTGTTTTTCACAAAATTAA+AGG - chr6_3:80930474-80930493 Msa0960810:intron 15.0%
!! AAAATAAATAAATCAGAATC+TGG - chr6_3:80930825-80930844 Msa0960810:intron 15.0%
!!! AATTTGTCAAAAATTTTGTT+AGG - chr6_3:80931257-80931276 Msa0960810:intron 15.0%
!!! TCAAAACTTTTATAAATACA+TGG - chr6_3:80932201-80932220 Msa0960810:intron 15.0%
!!! ATATGATTTTCTTTATTGTT+TGG + chr6_3:80932243-80932262 None:intergenic 15.0%
!!! ATTGTGAATTGTTTTATATT+AGG - chr6_3:80932660-80932679 Msa0960810:five_prime_UTR 15.0%
!! AGAAACAGAAAAAGAATAAA+AGG + chr6_3:80927109-80927128 None:intergenic 20.0%
!! AAATAATGATTTCACGAATT+CGG - chr6_3:80927567-80927586 Msa0960810:CDS 20.0%
!!! TTGTTCCATTTTTGTTTTTT+GGG + chr6_3:80928202-80928221 None:intergenic 20.0%
!!! TTTGTTCCATTTTTGTTTTT+TGG + chr6_3:80928203-80928222 None:intergenic 20.0%
!!! TTTCCAATACACTTTTTTAT+CGG - chr6_3:80928897-80928916 Msa0960810:intron 20.0%
!!! GTTCTTTTAACCATATTTTA+AGG - chr6_3:80930280-80930299 Msa0960810:intron 20.0%
!! TTCTTAAACACCTTAAAATA+TGG + chr6_3:80930293-80930312 None:intergenic 20.0%
! CTGGAAATATTGTAAAGAAT+TGG + chr6_3:80926972-80926991 None:intergenic 25.0%
!!! TATGGATTTTGATTAGTGAT+TGG + chr6_3:80927050-80927069 None:intergenic 25.0%
!!! CTTAAATTCGCCATTTTTTA+AGG + chr6_3:80927184-80927203 None:intergenic 25.0%
! CTTGATTAATGTAATTGTCA+TGG - chr6_3:80927540-80927559 Msa0960810:CDS 25.0%
!! TCATTGTTTCTTCATAATGT+TGG - chr6_3:80927703-80927722 Msa0960810:intron 25.0%
!! CATTGTTTCTTCATAATGTT+GGG - chr6_3:80927704-80927723 Msa0960810:intron 25.0%
!! ATTGTTTCTTCATAATGTTG+GGG - chr6_3:80927705-80927724 Msa0960810:intron 25.0%
! TTATTAGTAATACATGTGCA+TGG - chr6_3:80927806-80927825 Msa0960810:intron 25.0%
! AATATATCACATAGAGCTTA+TGG + chr6_3:80927960-80927979 None:intergenic 25.0%
!!! TCATAAAAGTGTTGATGTTT+TGG + chr6_3:80928496-80928515 None:intergenic 25.0%
!!! TCAATACAAAAGTGCTTAAA+TGG - chr6_3:80928554-80928573 Msa0960810:CDS 25.0%
!! TGCTTTTCTGACTATTAAAA+TGG - chr6_3:80928747-80928766 Msa0960810:intron 25.0%
! CACATTGTTTAGAGAAAAAA+GGG + chr6_3:80928787-80928806 None:intergenic 25.0%
! TCACATTGTTTAGAGAAAAA+AGG + chr6_3:80928788-80928807 None:intergenic 25.0%
!! TAACCGATAAAAAAGTGTAT+TGG + chr6_3:80928903-80928922 None:intergenic 25.0%
!! TTATCGGTTAAATTTCACAT+CGG - chr6_3:80928913-80928932 Msa0960810:intron 25.0%
! ATGTGAATCCCATATAAATT+TGG - chr6_3:80928948-80928967 Msa0960810:intron 25.0%
! ATTAAGGAAAAAACTGTCTT+TGG + chr6_3:80929062-80929081 None:intergenic 25.0%
! TTGTCAAATTACAGATATAG+TGG + chr6_3:80929259-80929278 None:intergenic 25.0%
! TCATATTTCATTATAAGGTC+AGG + chr6_3:80929393-80929412 None:intergenic 25.0%
! AGAGTTTAAGCAATTAAAAG+AGG - chr6_3:80929696-80929715 Msa0960810:intron 25.0%
!!! TAGTTCGGTTTTTAAAACAT+AGG + chr6_3:80929862-80929881 None:intergenic 25.0%
! TATAGTTCAACCTCTTTAAA+TGG - chr6_3:80929909-80929928 Msa0960810:CDS 25.0%
!! TCTGAAATATCAGTTATGTT+GGG + chr6_3:80930244-80930263 None:intergenic 25.0%
!!! ATTTTAAGGTGTTTAAGAAG+TGG - chr6_3:80930294-80930313 Msa0960810:intron 25.0%
! TTGTCGAATTATCAAATTTC+TGG - chr6_3:80930321-80930340 Msa0960810:intron 25.0%
!! TGTTTAAAGTTTAAATGCAC+AGG + chr6_3:80930500-80930519 None:intergenic 25.0%
! AACAGTTTCTCAAAATAAGT+TGG - chr6_3:80930591-80930610 Msa0960810:intron 25.0%
!!! TTGTGTAGAAAGTCATTTTT+AGG + chr6_3:80930677-80930696 None:intergenic 25.0%
! GTTAAAAGACAAATCAAGAT+CGG - chr6_3:80930711-80930730 Msa0960810:intron 25.0%
! AAAATATCGAGCTTGAAATA+TGG + chr6_3:80930797-80930816 None:intergenic 25.0%
! TCAATATCAAGGATCAAATA+GGG + chr6_3:80931702-80931721 None:intergenic 25.0%
! TTCAATATCAAGGATCAAAT+AGG + chr6_3:80931703-80931722 None:intergenic 25.0%
!! TTTTCTTTATTGTTTGGATG+AGG + chr6_3:80932237-80932256 None:intergenic 25.0%
! CAATTCACAATATTCTTAGA+AGG + chr6_3:80932651-80932670 None:intergenic 25.0%
! GCTTAAAAATCACATATTTG+AGG + chr6_3:80932763-80932782 None:intergenic 25.0%
!!! CAAATATGTGATTTTTAAGC+TGG - chr6_3:80932763-80932782 Msa0960810:five_prime_UTR 25.0%
TGTAATTATGAATCACCGTT+TGG + chr6_3:80927019-80927038 None:intergenic 30.0%
AAAAGGAAGAAGAAAAACAG+AGG + chr6_3:80927133-80927152 None:intergenic 30.0%
ATAACAGTATAATTAGTCCC+AGG + chr6_3:80927397-80927416 None:intergenic 30.0%
!! AAGTTGAGTGTTTGATTTGT+TGG - chr6_3:80927764-80927783 Msa0960810:intron 30.0%
ACTTATGATACAATGCTTAC+AGG - chr6_3:80927893-80927912 Msa0960810:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr6_3:80927936-80927955 None:intergenic 30.0%
TGGGAAAAAAAATACACACA+AGG - chr6_3:80928124-80928143 Msa0960810:intron 30.0%
GGGAAAAAAAATACACACAA+GGG - chr6_3:80928125-80928144 Msa0960810:intron 30.0%
GGAAAAAAAATACACACAAG+GGG - chr6_3:80928126-80928145 Msa0960810:intron 30.0%
!!! TTTTTTGGGTGGTTTTTAAG+GGG + chr6_3:80928188-80928207 None:intergenic 30.0%
!!! GTTTTTTGGGTGGTTTTTAA+GGG + chr6_3:80928189-80928208 None:intergenic 30.0%
!!! TGTTTTTTGGGTGGTTTTTA+AGG + chr6_3:80928190-80928209 None:intergenic 30.0%
AACCACCCAAAAAACAAAAA+TGG - chr6_3:80928194-80928213 Msa0960810:intron 30.0%
!!! TTCCATTTTTGTTTTTTGGG+TGG + chr6_3:80928199-80928218 None:intergenic 30.0%
!!! TAAAAGTGTTGATGTTTTGG+TGG + chr6_3:80928493-80928512 None:intergenic 30.0%
!! TACAAAAGTGCTTAAATGGT+TGG - chr6_3:80928558-80928577 Msa0960810:CDS 30.0%
CAAAACAAAACCACAAAAGA+TGG + chr6_3:80928589-80928608 None:intergenic 30.0%
TTTGCATGACTTATGTTGAA+AGG - chr6_3:80928605-80928624 Msa0960810:intron 30.0%
TTGCATGACTTATGTTGAAA+GGG - chr6_3:80928606-80928625 Msa0960810:intron 30.0%
!!! ACATTTTGTTTGTACCGATT+AGG - chr6_3:80928639-80928658 Msa0960810:intron 30.0%
! TACTCATGTATTGTTTCTTG+AGG - chr6_3:80928695-80928714 Msa0960810:intron 30.0%
TGAATCCCATATAAATTTGG+CGG - chr6_3:80928951-80928970 Msa0960810:intron 30.0%
! TAACCAATAAAAGAGTGTGT+TGG - chr6_3:80928994-80929013 Msa0960810:intron 30.0%
! TTTCCAACACACTCTTTTAT+TGG + chr6_3:80929000-80929019 None:intergenic 30.0%
AGCAAACAGAACAGTTATAA+CGG + chr6_3:80929433-80929452 None:intergenic 30.0%
! ATAACTGTTCTGTTTGCTTT+TGG - chr6_3:80929435-80929454 Msa0960810:CDS 30.0%
TCTGCAAAAGGAGAAATTAT+TGG - chr6_3:80929622-80929641 Msa0960810:intron 30.0%
CTGCAAAAGGAGAAATTATT+GGG - chr6_3:80929623-80929642 Msa0960810:intron 30.0%
TTGCTTAAACTCTTTCAACA+TGG + chr6_3:80929689-80929708 None:intergenic 30.0%
TAACTGTACGTAGTAAAAAC+TGG - chr6_3:80929969-80929988 Msa0960810:CDS 30.0%
!! CTCTGAAATATCAGTTATGT+TGG + chr6_3:80930245-80930264 None:intergenic 30.0%
CAACATAACTGATATTTCAG+AGG - chr6_3:80930243-80930262 Msa0960810:intron 30.0%
ATAACTGATATTTCAGAGGT+TGG - chr6_3:80930247-80930266 Msa0960810:intron 30.0%
TAGGAACTCTTCAGATATTT+GGG + chr6_3:80930658-80930677 None:intergenic 30.0%
TTAGGAACTCTTCAGATATT+TGG + chr6_3:80930659-80930678 None:intergenic 30.0%
GAACAATTTCACATGCAAAA+GGG + chr6_3:80930968-80930987 None:intergenic 30.0%
AGAACAATTTCACATGCAAA+AGG + chr6_3:80930969-80930988 None:intergenic 30.0%
ATTCACATCTGCTAAGTAAA+GGG + chr6_3:80930997-80931016 None:intergenic 30.0%
AATTCACATCTGCTAAGTAA+AGG + chr6_3:80930998-80931017 None:intergenic 30.0%
CTCACTTACATCAAATTCAT+TGG - chr6_3:80931199-80931218 Msa0960810:intron 30.0%
AACTATTCACTTTCTGCTAT+TGG - chr6_3:80931382-80931401 Msa0960810:intron 30.0%
!! TATAAAGTGTTGGTGTTACA+AGG + chr6_3:80931494-80931513 None:intergenic 30.0%
ACGACTTCAATATAAAGTGT+TGG + chr6_3:80931504-80931523 None:intergenic 30.0%
!! AAATATAGGAAGCACTAACA+CGG + chr6_3:80931598-80931617 None:intergenic 30.0%
!! TCAAGACGGACTAAAAATAT+AGG + chr6_3:80931612-80931631 None:intergenic 30.0%
! GATGATCTTGTTTAAATTGC+AGG - chr6_3:80932061-80932080 Msa0960810:intron 30.0%
ACATCAATAGAAGATTTCAG+AGG - chr6_3:80932170-80932189 Msa0960810:intron 30.0%
CATCAATAGAAGATTTCAGA+GGG - chr6_3:80932171-80932190 Msa0960810:intron 30.0%
TATTGTTTGGATGAGGAAAT+TGG + chr6_3:80932230-80932249 None:intergenic 30.0%
! AATTGGACTTTTGCATGTGA+GGG + chr6_3:80926955-80926974 None:intergenic 35.0%
TAAGCATTTGGAGGATTATC+TGG + chr6_3:80926991-80927010 None:intergenic 35.0%
CAAATGCTTACTCATCCAAA+CGG - chr6_3:80927001-80927020 Msa0960810:three_prime_UTR 35.0%
CTTTCTGCAAGATTCAGAAA+AGG + chr6_3:80927150-80927169 None:intergenic 35.0%
! AGAATTGCTAGTTCTCATCT+GGG + chr6_3:80927212-80927231 None:intergenic 35.0%
! ATTTTGAACCCAACTCTACT+AGG + chr6_3:80927280-80927299 None:intergenic 35.0%
TTAACAGTAACACTCAGATC+AGG + chr6_3:80927331-80927350 None:intergenic 35.0%
! GATCTGAGTGTTACTGTTAA+TGG - chr6_3:80927331-80927350 Msa0960810:intron 35.0%
ATGCCAAATCCATTTGTGAT+TGG - chr6_3:80927361-80927380 Msa0960810:intron 35.0%
! GATCCAATCACAAATGGATT+TGG + chr6_3:80927367-80927386 None:intergenic 35.0%
AATCCATTTGTGATTGGATC+AGG - chr6_3:80927367-80927386 Msa0960810:intron 35.0%
ATGAAAAGAGCCTTTGATGA+AGG - chr6_3:80927415-80927434 Msa0960810:intron 35.0%
!! TTGAGTGTTTGATTTGTTGG+TGG - chr6_3:80927767-80927786 Msa0960810:intron 35.0%
!! TGAGTGTTTGATTTGTTGGT+GGG - chr6_3:80927768-80927787 Msa0960810:intron 35.0%
AAATACACACAAGGGGAAAT+TGG - chr6_3:80928133-80928152 Msa0960810:intron 35.0%
!! GGTTTTTAAGGGGTTTTTGT+TGG + chr6_3:80928178-80928197 None:intergenic 35.0%
!! GGTTTGTTTTTCAAAGGGTT+TGG + chr6_3:80928416-80928435 None:intergenic 35.0%
!!! AGGTCGGTTTGTTTTTCAAA+GGG + chr6_3:80928421-80928440 None:intergenic 35.0%
! GTTGGTATTTCCATCTTTTG+TGG - chr6_3:80928576-80928595 Msa0960810:CDS 35.0%
!! TTGTTTGTACCGATTAGGAA+AGG - chr6_3:80928644-80928663 Msa0960810:intron 35.0%
!! TGTTTGTACCGATTAGGAAA+GGG - chr6_3:80928645-80928664 Msa0960810:intron 35.0%
GATCTGTATGATGCTAATTG+TGG - chr6_3:80928717-80928736 Msa0960810:intron 35.0%
AATGTGAGAGTGAGTTGTAA+AGG - chr6_3:80928801-80928820 Msa0960810:intron 35.0%
!! TTGTAAAGGAGTCTTGTTCT+TGG - chr6_3:80928815-80928834 Msa0960810:intron 35.0%
! AATGTGTTTGAGAGTGTGTT+GGG + chr6_3:80928876-80928895 None:intergenic 35.0%
TGGGATTCACATGATTTGAT+GGG + chr6_3:80928940-80928959 None:intergenic 35.0%
ATGGGATTCACATGATTTGA+TGG + chr6_3:80928941-80928960 None:intergenic 35.0%
GAATCCCATATAAATTTGGC+GGG - chr6_3:80928952-80928971 Msa0960810:intron 35.0%
TGTAATACAACTGAATGCAC+AGG + chr6_3:80929164-80929183 None:intergenic 35.0%
TTTGTTCAAATTCCTCTGTG+CGG - chr6_3:80929218-80929237 Msa0960810:intron 35.0%
AATGCAAATGGATCTGCAAA+AGG - chr6_3:80929610-80929629 Msa0960810:intron 35.0%
CAAAAGGAGAAATTATTGGG+TGG - chr6_3:80929626-80929645 Msa0960810:intron 35.0%
TCTTTCAACATGGTTTCAAG+CGG + chr6_3:80929679-80929698 None:intergenic 35.0%
AAGCGATGAGAATTCTATCA+GGG + chr6_3:80929726-80929745 None:intergenic 35.0%
AATTCTCATCGCTTCAATCA+TGG - chr6_3:80929732-80929751 Msa0960810:intron 35.0%
GAGTTGTAAGATGTGTTTCT+TGG - chr6_3:80929809-80929828 Msa0960810:intron 35.0%
! TTACTTTGATGGTTCAATCG+CGG + chr6_3:80929952-80929971 None:intergenic 35.0%
! ACTACGTACAGTTACTTTGA+TGG + chr6_3:80929963-80929982 None:intergenic 35.0%
! ACGTAGTAAAAACTGGTTCA+AGG - chr6_3:80929976-80929995 Msa0960810:CDS 35.0%
!!! CAGGTCAGATTTTTCAAGAT+AGG + chr6_3:80930053-80930072 None:intergenic 35.0%
ATAAACTTCTCATGTCCTCA+TGG - chr6_3:80930106-80930125 Msa0960810:CDS 35.0%
TTCTTGAAGAAGTTTGTGGA+TGG - chr6_3:80930176-80930195 Msa0960810:intron 35.0%
TTGTGGATGGATAAATGCAA+AGG - chr6_3:80930189-80930208 Msa0960810:intron 35.0%
! AACGTAAAGCTTGTTTGGTT+GGG + chr6_3:80930935-80930954 None:intergenic 35.0%
! AGAAGAACGTAAAGCTTGTT+TGG + chr6_3:80930940-80930959 None:intergenic 35.0%
AAATACAATCATGAGCGTCA+TGG - chr6_3:80931124-80931143 Msa0960810:intron 35.0%
AATACAATCATGAGCGTCAT+GGG - chr6_3:80931125-80931144 Msa0960810:intron 35.0%
TATTCACTTTCTGCTATTGG+TGG - chr6_3:80931385-80931404 Msa0960810:intron 35.0%
TGTAGTCACATTCAATCACT+TGG - chr6_3:80931569-80931588 Msa0960810:intron 35.0%
TACCATTGTCAGTATCAAGA+CGG + chr6_3:80931626-80931645 None:intergenic 35.0%
TGGTAGGATATTCTTTCCTT+TGG - chr6_3:80931641-80931660 Msa0960810:intron 35.0%
TCCCTTTAACAAGGAGAAAA+GGG + chr6_3:80931672-80931691 None:intergenic 35.0%
TTCCCTTTAACAAGGAGAAA+AGG + chr6_3:80931673-80931692 None:intergenic 35.0%
TATCAAGGATCAAATAGGGA+AGG + chr6_3:80931698-80931717 None:intergenic 35.0%
TTGATCCTTGATATTGAACG+TGG - chr6_3:80931705-80931724 Msa0960810:intron 35.0%
ATGAGATTCTTGCACTCAAT+AGG - chr6_3:80931900-80931919 Msa0960810:intron 35.0%
TGAGATTCTTGCACTCAATA+GGG - chr6_3:80931901-80931920 Msa0960810:intron 35.0%
!! TTTTACTACACACACTGACT+TGG - chr6_3:80932396-80932415 Msa0960810:CDS 35.0%
AGCAAGAAGCAATTAAGCAA+AGG - chr6_3:80932428-80932447 Msa0960810:CDS 35.0%
CAAAGGAAAGCCATAAAGAA+AGG - chr6_3:80932445-80932464 Msa0960810:CDS 35.0%
AGATTGCAAGCCTTTCTTTA+TGG + chr6_3:80932458-80932477 None:intergenic 35.0%
TGTGAAAGAAAGTGAAAGCA+TGG - chr6_3:80932504-80932523 Msa0960810:five_prime_UTR 35.0%
TATAGCTCTTGCAAATGAAG+TGG - chr6_3:80932580-80932599 Msa0960810:five_prime_UTR 35.0%
ACCATCATCATCAACTTTCA+TGG - chr6_3:80932734-80932753 Msa0960810:five_prime_UTR 35.0%
! GAATTGGACTTTTGCATGTG+AGG + chr6_3:80926956-80926975 None:intergenic 40.0%
TTGGATGAGTAAGCATTTGG+AGG + chr6_3:80927000-80927019 None:intergenic 40.0%
CGTTTGGATGAGTAAGCATT+TGG + chr6_3:80927003-80927022 None:intergenic 40.0%
AGGTGATTCTGAATCTGAGT+TGG + chr6_3:80927089-80927108 None:intergenic 40.0%
! CAGAATTGCTAGTTCTCATC+TGG + chr6_3:80927213-80927232 None:intergenic 40.0%
!!! GGTTTTCATTGGATTGGTCT+AGG - chr6_3:80927239-80927258 Msa0960810:CDS 40.0%
!! TTCATTGGATTGGTCTAGGA+AGG - chr6_3:80927243-80927262 Msa0960810:CDS 40.0%
ACAGTATAATTAGTCCCAGG+TGG + chr6_3:80927394-80927413 None:intergenic 40.0%
AAAGAGCCTTTGATGAAGGT+TGG - chr6_3:80927419-80927438 Msa0960810:intron 40.0%
AAGAGCCTTTGATGAAGGTT+GGG - chr6_3:80927420-80927439 Msa0960810:intron 40.0%
GAATACTGCATTGCAGATTG+CGG - chr6_3:80927597-80927616 Msa0960810:intron 40.0%
AATTGGTTGCCGTACAAACA+TGG - chr6_3:80928150-80928169 Msa0960810:intron 40.0%
TTGTTGGAGCCATGTTTGTA+CGG + chr6_3:80928162-80928181 None:intergenic 40.0%
!!! TGGCATCTGTTTTTGTTGTG+CGG + chr6_3:80928348-80928367 None:intergenic 40.0%
!!! CAGGTCGGTTTGTTTTTCAA+AGG + chr6_3:80928422-80928441 None:intergenic 40.0%
TTGTTCTTGGCTTCTTGCTA+TGG - chr6_3:80928828-80928847 Msa0960810:intron 40.0%
! GAATGTGTTTGAGAGTGTGT+TGG + chr6_3:80928877-80928896 None:intergenic 40.0%
CCATCCCGCCAAATTTATAT+GGG + chr6_3:80928959-80928978 None:intergenic 40.0%
CCATATAAATTTGGCGGGAT+GGG - chr6_3:80928957-80928976 Msa0960810:intron 40.0%
TTACACATTGTTCTCAACCG+CGG - chr6_3:80929179-80929198 Msa0960810:intron 40.0%
GAAGCGATGAGAATTCTATC+AGG + chr6_3:80929727-80929746 None:intergenic 40.0%
! AAGAGTACAATAAAGCCGCA+TGG - chr6_3:80929755-80929774 Msa0960810:intron 40.0%
AGAGTACAATAAAGCCGCAT+GGG - chr6_3:80929756-80929775 Msa0960810:intron 40.0%
ATCGATAGAGTCGAACAAAC+TGG - chr6_3:80929787-80929806 Msa0960810:intron 40.0%
GAGGTTGAACTATAACACGA+AGG + chr6_3:80929903-80929922 None:intergenic 40.0%
CTTGTTCAGGCCATTTAAAG+AGG + chr6_3:80929922-80929941 None:intergenic 40.0%
CTCTTTAAATGGCCTGAACA+AGG - chr6_3:80929920-80929939 Msa0960810:CDS 40.0%
AAAACCGAACCAGACATCAA+CGG + chr6_3:80930008-80930027 None:intergenic 40.0%
GCTCTTCTTGAAGAAGTTTG+TGG - chr6_3:80930172-80930191 Msa0960810:intron 40.0%
AAAGGCTACAGTTCCTGTTT+GGG - chr6_3:80930207-80930226 Msa0960810:intron 40.0%
AGTAGTACATCAGTTGCCAT+TGG - chr6_3:80930755-80930774 Msa0960810:intron 40.0%
AGTTGCCATTGGATCAAGAT+CGG - chr6_3:80930766-80930785 Msa0960810:intron 40.0%
ATTGTCCGATCTTGATCCAA+TGG + chr6_3:80930774-80930793 None:intergenic 40.0%
TCAGAATCTGGTGTACCATT+TGG - chr6_3:80930837-80930856 Msa0960810:intron 40.0%
! ACGTAAAGCTTGTTTGGTTG+GGG + chr6_3:80930934-80930953 None:intergenic 40.0%
! GAACGTAAAGCTTGTTTGGT+TGG + chr6_3:80930936-80930955 None:intergenic 40.0%
TTTCTGTTTGTAGCCAGCAA+GGG - chr6_3:80931064-80931083 Msa0960810:intron 40.0%
TTTGTTAGGTACTCAACTCC+AGG - chr6_3:80931271-80931290 Msa0960810:intron 40.0%
ATAACCTTCCCAAGTGCTAT+CGG + chr6_3:80931322-80931341 None:intergenic 40.0%
GCAGCTGAGTTTATTCTTCT+TGG - chr6_3:80931427-80931446 Msa0960810:intron 40.0%
GGTGATTCTTTCATCATACC+TGG + chr6_3:80931465-80931484 None:intergenic 40.0%
!! GTTGGTGTTACAAGGCTAAA+AGG + chr6_3:80931486-80931505 None:intergenic 40.0%
! TGTCTGAAACTGACACATGT+CGG + chr6_3:80931536-80931555 None:intergenic 40.0%
GTCTTGATACTGACAATGGT+AGG - chr6_3:80931625-80931644 Msa0960810:intron 40.0%
TTTAACAAGGAGAAAAGGGG+TGG + chr6_3:80931668-80931687 None:intergenic 40.0%
! ACCCCTTTTCTCCTTGTTAA+AGG - chr6_3:80931667-80931686 Msa0960810:intron 40.0%
CCCTTTAACAAGGAGAAAAG+GGG + chr6_3:80931671-80931690 None:intergenic 40.0%
! CCCCTTTTCTCCTTGTTAAA+GGG - chr6_3:80931668-80931687 Msa0960810:intron 40.0%
!! GGAAGGTATTCCCTTTAACA+AGG + chr6_3:80931681-80931700 None:intergenic 40.0%
AGTAACCAGGCAAAGAATCA+GGG + chr6_3:80931734-80931753 None:intergenic 40.0%
AAGTAACCAGGCAAAGAATC+AGG + chr6_3:80931735-80931754 None:intergenic 40.0%
TGATTCTTTGCCTGGTTACT+TGG - chr6_3:80931734-80931753 Msa0960810:intron 40.0%
GATTCTTTGCCTGGTTACTT+GGG - chr6_3:80931735-80931754 Msa0960810:intron 40.0%
! CTAACGAAAGCATGCTTAGT+GGG - chr6_3:80931929-80931948 Msa0960810:intron 40.0%
! TAACGAAAGCATGCTTAGTG+GGG - chr6_3:80931930-80931949 Msa0960810:intron 40.0%
! TTTGATAGCCTGTTGCTCTT+CGG - chr6_3:80931983-80932002 Msa0960810:intron 40.0%
TTTAAATTGCAGGTGTGCAC+TGG - chr6_3:80932071-80932090 Msa0960810:intron 40.0%
GCTTGCAATCTGATAAAGAC+TGG - chr6_3:80932467-80932486 Msa0960810:CDS 40.0%
CAATCTGATAAAGACTGGAC+AGG - chr6_3:80932472-80932491 Msa0960810:exon 40.0%
TCTTGCAAATGAAGTGGTGA+AGG - chr6_3:80932586-80932605 Msa0960810:five_prime_UTR 40.0%
!! GCCATGAAAGTTGATGATGA+TGG + chr6_3:80932738-80932757 None:intergenic 40.0%
AGAACTAGCAATTCTGCACC+TGG - chr6_3:80927217-80927236 Msa0960810:CDS 45.0%
GAACTAGCAATTCTGCACCT+GGG - chr6_3:80927218-80927237 Msa0960810:CDS 45.0%
! TTCTGCACCTGGGTTTTCAT+TGG - chr6_3:80927228-80927247 Msa0960810:CDS 45.0%
! CACCTGGGTTTTCATTGGAT+TGG - chr6_3:80927233-80927252 Msa0960810:CDS 45.0%
GACCAATCCAATGAAAACCC+AGG + chr6_3:80927238-80927257 None:intergenic 45.0%
ATGCACGTCCTAGTAGAGTT+GGG - chr6_3:80927269-80927288 Msa0960810:CDS 45.0%
GGACCTGATCCAATCACAAA+TGG + chr6_3:80927373-80927392 None:intergenic 45.0%
AGAGCCTTTGATGAAGGTTG+GGG - chr6_3:80927421-80927440 Msa0960810:intron 45.0%
ATTGCAGATTGCGGTCTTTG+CGG - chr6_3:80927606-80927625 Msa0960810:intron 45.0%
CTTATTAGTGCGTCTTGCAC+GGG + chr6_3:80928098-80928117 None:intergenic 45.0%
GCTTATTAGTGCGTCTTGCA+CGG + chr6_3:80928099-80928118 None:intergenic 45.0%
GCAAGACGCACTAATAAGCT+CGG - chr6_3:80928100-80928119 Msa0960810:intron 45.0%
CAAGACGCACTAATAAGCTC+GGG - chr6_3:80928101-80928120 Msa0960810:intron 45.0%
!! GAACAAAAGAGTACTGACGC+TGG - chr6_3:80928216-80928235 Msa0960810:CDS 45.0%
ATCTTCGGCTGCTCTTTAGA+CGG + chr6_3:80928299-80928318 None:intergenic 45.0%
TGGGCTCTTGGTTGTATCTT+CGG + chr6_3:80928314-80928333 None:intergenic 45.0%
!!! ATCTGTTTTTGTTGTGCGGG+AGG + chr6_3:80928344-80928363 None:intergenic 45.0%
!!! GGCATCTGTTTTTGTTGTGC+GGG + chr6_3:80928347-80928366 None:intergenic 45.0%
!! GTCTTGGAGGGTTTTGATCT+TGG + chr6_3:80928368-80928387 None:intergenic 45.0%
CTGTTCACATGTGTCTTGGA+GGG + chr6_3:80928380-80928399 None:intergenic 45.0%
! TTTTCAAAGGGTTTGGCTGC+TGG + chr6_3:80928409-80928428 None:intergenic 45.0%
CAATCTTCCTTCTGCTGTCT+CGG + chr6_3:80928451-80928470 None:intergenic 45.0%
!!! GTGTTGATGTTTTGGTGGCA+GGG + chr6_3:80928488-80928507 None:intergenic 45.0%
!!! AGTGTTGATGTTTTGGTGGC+AGG + chr6_3:80928489-80928508 None:intergenic 45.0%
TCGCATGACCCTTTCCTAAT+CGG + chr6_3:80928656-80928675 None:intergenic 45.0%
CCCATATAAATTTGGCGGGA+TGG - chr6_3:80928956-80928975 Msa0960810:intron 45.0%
CCCATCCCGCCAAATTTATA+TGG + chr6_3:80928960-80928979 None:intergenic 45.0%
GCAAACAACTCGCTGTATCT+CGG - chr6_3:80929096-80929115 Msa0960810:intron 45.0%
GCTCTAGCACTATAGAGTAG+CGG + chr6_3:80929332-80929351 None:intergenic 45.0%
ATGTAACTCCTCGTTATGCC+CGG - chr6_3:80929578-80929597 Msa0960810:intron 45.0%
AACCGAACTAGACATCGATC+CGG - chr6_3:80929872-80929891 Msa0960810:CDS 45.0%
!! TCGCGGTTTTATCCTTGTTC+AGG + chr6_3:80929935-80929954 None:intergenic 45.0%
AAACCGAACCAGACATCAAC+GGG + chr6_3:80930007-80930026 None:intergenic 45.0%
CAAAGGCTACAGTTCCTGTT+TGG - chr6_3:80930206-80930225 Msa0960810:intron 45.0%
TCGAGATCAGATGGTCCAAA+TGG + chr6_3:80930855-80930874 None:intergenic 45.0%
GTTGTTGGATCGAGATCAGA+TGG + chr6_3:80930864-80930883 None:intergenic 45.0%
! CGTAAAGCTTGTTTGGTTGG+GGG + chr6_3:80930933-80930952 None:intergenic 45.0%
GTTTCTGTTTGTAGCCAGCA+AGG - chr6_3:80931063-80931082 Msa0960810:intron 45.0%
! GCTTTTGCAGAATAACCACC+TGG + chr6_3:80931292-80931311 None:intergenic 45.0%
CAGTTCATCCGATAGCACTT+GGG - chr6_3:80931311-80931330 Msa0960810:intron 45.0%
! TCTTGGTGCAAATACTGTCC+AGG - chr6_3:80931444-80931463 Msa0960810:intron 45.0%
TGTGACTACATGTGTCGTGT+CGG + chr6_3:80931559-80931578 None:intergenic 45.0%
GTCCGTCTTGATACTGACAA+TGG - chr6_3:80931621-80931640 Msa0960810:intron 45.0%
GGGATCCACGTTCAATATCA+AGG + chr6_3:80931713-80931732 None:intergenic 45.0%
GTAACCAGGCAAAGAATCAG+GGG + chr6_3:80931733-80931752 None:intergenic 45.0%
ACCACTATTCCCAAGTAACC+AGG + chr6_3:80931747-80931766 None:intergenic 45.0%
CCACTAAGCATGCTTTCGTT+AGG + chr6_3:80931931-80931950 None:intergenic 45.0%
! CCTAACGAAAGCATGCTTAG+TGG - chr6_3:80931928-80931947 Msa0960810:intron 45.0%
GATAAAGACTGGACAGGAGA+TGG - chr6_3:80932478-80932497 Msa0960810:exon 45.0%
!!! TATTTTATTTTTTTTTGAAT+TGG - chr6_3:80928051-80928070 Msa0960810:intron 5.0%
CATGCACGTCCTAGTAGAGT+TGG - chr6_3:80927268-80927287 Msa0960810:CDS 50.0%
TGATTGGATCAGGTCCACCT+GGG - chr6_3:80927377-80927396 Msa0960810:intron 50.0%
ACGCACTAATAAGCTCGGGT+GGG - chr6_3:80928105-80928124 Msa0960810:intron 50.0%
GCTGTTCACATGTGTCTTGG+AGG + chr6_3:80928381-80928400 None:intergenic 50.0%
!!! GTGGCAGGGTGGTTTTGTTT+TGG + chr6_3:80928474-80928493 None:intergenic 50.0%
!!! TTGATGTTTTGGTGGCAGGG+TGG + chr6_3:80928485-80928504 None:intergenic 50.0%
! ACAGCGAGTTGTTTGCTGCA+GGG + chr6_3:80929092-80929111 None:intergenic 50.0%
! TACAGCGAGTTGTTTGCTGC+AGG + chr6_3:80929093-80929112 None:intergenic 50.0%
ACAACTCGCTGTATCTCGGT+TGG - chr6_3:80929100-80929119 Msa0960810:intron 50.0%
CAACTCGCTGTATCTCGGTT+GGG - chr6_3:80929101-80929120 Msa0960810:intron 50.0%
AACTCGCTGTATCTCGGTTG+GGG - chr6_3:80929102-80929121 Msa0960810:intron 50.0%
AACTGAATGCACAGGAGACG+AGG + chr6_3:80929156-80929175 None:intergenic 50.0%
ACCGCGGATCGCAAAAATAG+CGG - chr6_3:80929195-80929214 Msa0960810:intron 50.0%
!!! ACCGCTATTTTTGCGATCCG+CGG + chr6_3:80929199-80929218 None:intergenic 50.0%
ATTTGCATTAGCCCGTAGCC+GGG + chr6_3:80929599-80929618 None:intergenic 50.0%
CATTTGCATTAGCCCGTAGC+CGG + chr6_3:80929600-80929619 None:intergenic 50.0%
GTACAATAAAGCCGCATGGG+AGG - chr6_3:80929759-80929778 Msa0960810:intron 50.0%
ATCGATAAGCTCCTCCCATG+CGG + chr6_3:80929773-80929792 None:intergenic 50.0%
CTATAACACGAAGGTCTCGC+CGG + chr6_3:80929894-80929913 None:intergenic 50.0%
CTCATGTCCTCATGGTATGC+CGG - chr6_3:80930114-80930133 Msa0960810:intron 50.0%
!! GCAAAATGGGTGCTGCTGTT+GGG - chr6_3:80930140-80930159 Msa0960810:intron 50.0%
GGAGTCATCTTAGCCCAAAC+AGG + chr6_3:80930223-80930242 None:intergenic 50.0%
! CTACTGACTGCGTGAATGTG+TGG + chr6_3:80930740-80930759 None:intergenic 50.0%
GTCAGCACAACTGTGGTTGT+TGG + chr6_3:80930879-80930898 None:intergenic 50.0%
TCATGCAGTCAGCACAACTG+TGG + chr6_3:80930886-80930905 None:intergenic 50.0%
GAACTTAGAGCAACCCTTGC+TGG + chr6_3:80931080-80931099 None:intergenic 50.0%
! GCAAGGGTTGCTCTAAGTTC+AGG - chr6_3:80931080-80931099 Msa0960810:intron 50.0%
! TGCTCTAAGTTCAGGATGCG+AGG - chr6_3:80931088-80931107 Msa0960810:intron 50.0%
! GCTCTAAGTTCAGGATGCGA+GGG - chr6_3:80931089-80931108 Msa0960810:intron 50.0%
GTTAGGTACTCAACTCCAGG+TGG - chr6_3:80931274-80931293 Msa0960810:intron 50.0%
GCAGTTCATCCGATAGCACT+TGG - chr6_3:80931310-80931329 Msa0960810:intron 50.0%
TCATCCGATAGCACTTGGGA+AGG - chr6_3:80931315-80931334 Msa0960810:intron 50.0%
!! GCTATTGGTGGTGTTGAGAC+TGG - chr6_3:80931397-80931416 Msa0960810:intron 50.0%
!! ATTGGTGGTGTTGAGACTGG+TGG - chr6_3:80931400-80931419 Msa0960810:intron 50.0%
GCCTGGTTACTTGGGAATAG+TGG - chr6_3:80931743-80931762 Msa0960810:intron 50.0%
GTTCAAGACCGAAGAGCAAC+AGG + chr6_3:80931994-80932013 None:intergenic 50.0%
GTTGCTCTTCGGTCTTGAAC+AGG - chr6_3:80931994-80932013 Msa0960810:intron 50.0%
GTCTTGAACAGGATTGTCCC+TGG - chr6_3:80932005-80932024 Msa0960810:intron 50.0%
TGAACAGGATTGTCCCTGGT+AGG - chr6_3:80932009-80932028 Msa0960810:intron 50.0%
TCAGACGTATCCTCCTACCA+GGG + chr6_3:80932025-80932044 None:intergenic 50.0%
! TGCACTGGCGTTATGATGCA+TGG - chr6_3:80932086-80932105 Msa0960810:intron 50.0%
GGCGTTATGATGCATGGCTA+TGG - chr6_3:80932092-80932111 Msa0960810:intron 50.0%
!! CACACACTGACTTGGTGCAA+AGG - chr6_3:80932404-80932423 Msa0960810:CDS 50.0%
GTGATTGGATCAGGTCCACC+TGG - chr6_3:80927376-80927395 Msa0960810:intron 55.0%
GCCTTTGATGAAGGTTGGGG+CGG - chr6_3:80927424-80927443 Msa0960810:intron 55.0%
ACCGCCCCAACCTTCATCAA+AGG + chr6_3:80927428-80927447 None:intergenic 55.0%
GACGCACTAATAAGCTCGGG+TGG - chr6_3:80928104-80928123 Msa0960810:intron 55.0%
! TTGACGCAGGGGTATGCATG+TGG + chr6_3:80928259-80928278 None:intergenic 55.0%
ATACCCCTGCGTCAACACCA+AGG - chr6_3:80928264-80928283 Msa0960810:CDS 55.0%
TGCTCTTTAGACGGTTGGGG+CGG + chr6_3:80928290-80928309 None:intergenic 55.0%
GGCTGCTCTTTAGACGGTTG+GGG + chr6_3:80928293-80928312 None:intergenic 55.0%
CGGCTGCTCTTTAGACGGTT+GGG + chr6_3:80928294-80928313 None:intergenic 55.0%
TCGGCTGCTCTTTAGACGGT+TGG + chr6_3:80928295-80928314 None:intergenic 55.0%
TTGTGCGGGAGGCTTCTGAT+GGG + chr6_3:80928333-80928352 None:intergenic 55.0%
GGCGCTGTTCACATGTGTCT+TGG + chr6_3:80928384-80928403 None:intergenic 55.0%
TCTTCCTTCTGCTGTCTCGG+TGG + chr6_3:80928448-80928467 None:intergenic 55.0%
AGGGTCATGCGACATGCAAC+TGG - chr6_3:80928664-80928683 Msa0960810:intron 55.0%
!! GCTGCAGGGCTGGTTGATTA+AGG + chr6_3:80929078-80929097 None:intergenic 55.0%
TATAGCACACTGCCGCACAG+AGG + chr6_3:80929233-80929252 None:intergenic 55.0%
! CGGCTACGGGCTAATGCAAA+TGG - chr6_3:80929598-80929617 Msa0960810:intron 55.0%
CGCCGGATCGATGTCTAGTT+CGG + chr6_3:80929877-80929896 None:intergenic 55.0%
AGGTTCAGCCCGTTGATGTC+TGG - chr6_3:80929996-80930015 Msa0960810:CDS 55.0%
CAGCCCGTTGATGTCTGGTT+CGG - chr6_3:80930001-80930020 Msa0960810:CDS 55.0%
TGGTATGCCGGAGCGCAAAA+TGG - chr6_3:80930126-80930145 Msa0960810:intron 55.0%
GGTATGCCGGAGCGCAAAAT+GGG - chr6_3:80930127-80930146 Msa0960810:intron 55.0%
!! CGCAAAATGGGTGCTGCTGT+TGG - chr6_3:80930139-80930158 Msa0960810:intron 55.0%
ATTGCCAACCCCTCAACGCA+AGG + chr6_3:80931179-80931198 None:intergenic 55.0%
GGAGAAAAGGGGTGGACCAA+AGG + chr6_3:80931660-80931679 None:intergenic 55.0%
GGATCCCCTGATTCTTTGCC+TGG - chr6_3:80931726-80931745 Msa0960810:intron 55.0%
ACAGGATTGTCCCTGGTAGG+AGG - chr6_3:80932012-80932031 Msa0960810:intron 55.0%
CTCAGACGTATCCTCCTACC+AGG + chr6_3:80932026-80932045 None:intergenic 55.0%
TGCGTCTTGCACGGGCTTGT+TGG + chr6_3:80928090-80928109 None:intergenic 60.0%
!! GGAGGCTTCTGATGGGCTCT+TGG + chr6_3:80928326-80928345 None:intergenic 60.0%
GTTGTGCGGGAGGCTTCTGA+TGG + chr6_3:80928334-80928353 None:intergenic 60.0%
CAAAGGGTTTGGCTGCTGGC+AGG + chr6_3:80928405-80928424 None:intergenic 60.0%
CTGTCTCGGTGGTGACAGGT+CGG + chr6_3:80928437-80928456 None:intergenic 60.0%
TCTGCTGTCTCGGTGGTGAC+AGG + chr6_3:80928441-80928460 None:intergenic 60.0%
GTCACCACCGAGACAGCAGA+AGG - chr6_3:80928441-80928460 Msa0960810:intron 60.0%
! CGAGTTGTTTGCTGCAGGGC+TGG + chr6_3:80929088-80929107 None:intergenic 60.0%
CTCCTCGTTATGCCCGGCTA+CGG - chr6_3:80929584-80929603 Msa0960810:intron 60.0%
TCCTCGTTATGCCCGGCTAC+GGG - chr6_3:80929585-80929604 Msa0960810:intron 60.0%
TTGCGCTCCGGCATACCATG+AGG + chr6_3:80930124-80930143 None:intergenic 60.0%
! GCAGCACCCATTTTGCGCTC+CGG + chr6_3:80930136-80930155 None:intergenic 60.0%
ACGTCCTGAGCCTTGCGTTG+AGG - chr6_3:80931166-80931185 Msa0960810:intron 60.0%
CGTCCTGAGCCTTGCGTTGA+GGG - chr6_3:80931167-80931186 Msa0960810:intron 60.0%
GTCCTGAGCCTTGCGTTGAG+GGG - chr6_3:80931168-80931187 Msa0960810:intron 60.0%
AACCCCTCAACGCAAGGCTC+AGG + chr6_3:80931173-80931192 None:intergenic 60.0%
TGAGCCTTGCGTTGAGGGGT+TGG - chr6_3:80931172-80931191 Msa0960810:intron 60.0%
!! CGGCCTTGGTGTTGACGCAG+GGG + chr6_3:80928270-80928289 None:intergenic 65.0%
!! GCGGCCTTGGTGTTGACGCA+GGG + chr6_3:80928271-80928290 None:intergenic 65.0%
TTAGACGGTTGGGGCGGCCT+TGG + chr6_3:80928284-80928303 None:intergenic 65.0%
!! GGCGGCCTTGGTGTTGACGC+AGG + chr6_3:80928272-80928291 None:intergenic 70.0%
GCCCGTAGCCGGGCATAACG+AGG + chr6_3:80929589-80929608 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 80926886 80932790 80926886 ID=Msa0960810;Name=Msa0960810
chr6_3 mRNA 80926886 80932790 80926886 ID=Msa0960810-mRNA-1;Parent=Msa0960810;Name=Msa0960810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=304|1|1|1|1|1|7|253|424
chr6_3 exon 80926886 80927295 80926886 ID=Msa0960810-mRNA-1:exon:14522;Parent=Msa0960810-mRNA-1
chr6_3 exon 80927484 80927593 80927484 ID=Msa0960810-mRNA-1:exon:14521;Parent=Msa0960810-mRNA-1
chr6_3 exon 80928211 80928397 80928211 ID=Msa0960810-mRNA-1:exon:14520;Parent=Msa0960810-mRNA-1
chr6_3 exon 80928487 80928599 80928487 ID=Msa0960810-mRNA-1:exon:14519;Parent=Msa0960810-mRNA-1
chr6_3 exon 80929412 80929582 80929412 ID=Msa0960810-mRNA-1:exon:14518;Parent=Msa0960810-mRNA-1
chr6_3 exon 80929863 80930126 80929863 ID=Msa0960810-mRNA-1:exon:14517;Parent=Msa0960810-mRNA-1
chr6_3 exon 80932214 80932790 80932214 ID=Msa0960810-mRNA-1:exon:14516;Parent=Msa0960810-mRNA-1
chr6_3 five_prime_UTR 80932487 80932790 80932487 ID=Msa0960810-mRNA-1:five_prime_utr;Parent=Msa0960810-mRNA-1
chr6_3 CDS 80932214 80932486 80932214 ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1
chr6_3 CDS 80929863 80930126 80929863 ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1
chr6_3 CDS 80929412 80929582 80929412 ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1
chr6_3 CDS 80928487 80928599 80928487 ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1
chr6_3 CDS 80928211 80928397 80928211 ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1
chr6_3 CDS 80927484 80927593 80927484 ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1
chr6_3 CDS 80927139 80927295 80927139 ID=Msa0960810-mRNA-1:cds;Parent=Msa0960810-mRNA-1
chr6_3 three_prime_UTR 80926886 80927138 80926886 ID=Msa0960810-mRNA-1:three_prime_utr;Parent=Msa0960810-mRNA-1
Gene Sequence

>Msa0960810

ATGGCGAATTTAAGCATGACCCAGATGAGAACTAGCAATTCTGCACCTGGGTTTTCATTGGATTGGTCTAGGAAGGTTCATGCACGTCCTAGTAGAGTTGGGTTCAAAATTTTTGCTTCTGAGAGTCAAGCTTCAGAACCTGATCTGAGTGTTACTGTTAATGGTTTACATATGCCAAATCCATTTGTGATTGGATCAGGTCCACCTGGGACTAATTATACTGTTATGAAAAGAGCCTTTGATGAAGGTTGGGGCGGTGTCATTGCTAAAACTGTATCACTTGATGCAGCAAAAGTTATAAATGTAACTCCTCGTTATGCCCGGCTACGGGCTAATGCAAATGGATCTGCAAAAGGAGAAATTATTGGGTGGCAGAATATTGAACTTATCAGTGATAGACCGCTTGAAACCATGTTGAAAGAGTTTAAGCAATTAAAAGAGGAGTACCCTGATAGAATTCTCATCGCTTCAATCATGGAAGAGTACAATAAAGCCGCATGGGAGGAGCTTATCGATAGAGTCGAACAAACTGGAGTTGATGCGATTGAAATAAACTTCTCATGTCCTCATGGTATGCCGGAGCGCAAAATGGGTGCTGCTGTTGGGCAAGATTGTGCTCTTCTTGAAGAAGTTTGTGGATGGATAAATGCAAAGGCTACAGTTCCTGTTTGGGCTAAGATGACTCCCAACATAACTGATATTTCAGAGCCAGCAAGGGTTGCTCTAAGTTCAGGATGCGAGGGAGTAGCTGCTATAAATACAATCATGAGCGTCATGGGAATCAATCTCAATACATTACGTCCTGAGCCTTGCGTTGAGGGGTACTCAACTCCAGGTGGTTATTCTGCAAAAGCAGTTCATCCGATAGCACTTGGGAAGGTTATGAGTATTGCGAAAATGATGAAATCAGAGTTTGATAGTGAGAACTATTCACTTTCTGCTATTGGTGGTGTTGAGACTGGTGGTGATGCAGCTGAGTTTATTCTTCTTGGTGCAAATACTGTCCAGGTGTGCACTGGCGTTATGATGCATGGCTATGGTCTTGTGAAGAAGCTTTCTCTTGAGCTAAAAGACTTCATGAAAAAGCACAATTTCACATCAATAGAAGATTTCAGAGGGGCATCTCTTCAGTATTTTACTACACACACTGACTTGGTGCAAAGGCAGCAAGAAGCAATTAAGCAAAGGAAAGCCATAAAGAAAGGCTTGCAATCTGATAAAGACTGGACAGGAGATGGTTTTGTGAAAGAAAGTGAAAGCATGGTTTCTAATTAA

Protein sequence

>Msa0960810

MANLSMTQMRTSNSAPGFSLDWSRKVHARPSRVGFKIFASESQASEPDLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAAKVINVTPRYARLRANANGSAKGEIIGWQNIELISDRPLETMLKEFKQLKEEYPDRILIASIMEEYNKAAWEELIDRVEQTGVDAIEINFSCPHGMPERKMGAAVGQDCALLEEVCGWINAKATVPVWAKMTPNITDISEPARVALSSGCEGVAAINTIMSVMGINLNTLRPEPCVEGYSTPGGYSAKAVHPIALGKVMSIAKMMKSEFDSENYSLSAIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKKLSLELKDFMKKHNFTSIEDFRGASLQYFTTHTDLVQRQQEAIKQRKAIKKGLQSDKDWTGDGFVKESESMVSN*