AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0964050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964050 MtrunA17_Chr6g0479191 95.519 424 19 0 1 424 1 424 0.0 847
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964050 AT3G17810.1 80.653 429 75 4 1 424 1 426 0.0 713

Find 111 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTGAGTGTTACTGTTAA+TGG 0.180819 6_3:-90140418 Msa0964050:CDS
GCAGCTGAGTTTATTCTTCT+TGG 0.200783 6_3:-90136323 Msa0964050:CDS
AGATTGCAAGCCTTTCTTTA+TGG 0.204573 6_3:+90135291 None:intergenic
TATTTATAAGATTATGATTA+AGG 0.216600 6_3:+90140832 None:intergenic
GGTAATATTATAATATTATA+TGG 0.224296 6_3:+90140684 None:intergenic
AACTATTCACTTTCTGCTAT+TGG 0.259287 6_3:-90136368 Msa0964050:CDS
TGGTATGCCGGAGCGCAAAA+TGG 0.263705 6_3:-90137624 Msa0964050:CDS
CAGAATTGCTAGTTCTCATC+TGG 0.278551 6_3:+90140539 None:intergenic
TAAGCATTTGGAGGATTATC+TGG 0.282254 6_3:+90140761 None:intergenic
CTGGAAATATTGTAAAGAAT+TGG 0.307064 6_3:+90140780 None:intergenic
TCTGCAAAAGGAGAAATTAT+TGG 0.311163 6_3:-90138127 Msa0964050:CDS
CAAAGGCTACAGTTCCTGTT+TGG 0.312936 6_3:-90137544 Msa0964050:CDS
CGTTTGGATGAGTAAGCATT+TGG 0.341817 6_3:+90140749 None:intergenic
ACCATCATCATCAACTTTCA+TGG 0.353220 6_3:-90135012 Msa0964050:three_prime_UTR
GAACTTAGAGCAACCCTTGC+TGG 0.357378 6_3:+90136673 None:intergenic
CGTCCTGAGCCTTGCGTTGA+GGG 0.358604 6_3:-90136583 Msa0964050:CDS
GATCCAATCACAAATGGATT+TGG 0.372017 6_3:+90140385 None:intergenic
GCTCTTCTTGAAGAAGTTTG+TGG 0.375842 6_3:-90137578 Msa0964050:CDS
CGCAAAATGGGTGCTGCTGT+TGG 0.388137 6_3:-90137611 Msa0964050:CDS
AAGAGCCTTTGATGAAGGTT+GGG 0.391243 6_3:-90140329 Msa0964050:CDS
GCTATTGGTGGTGTTGAGAC+TGG 0.396156 6_3:-90136353 Msa0964050:CDS
GAAGCGATGAGAATTCTATC+AGG 0.397731 6_3:+90138025 None:intergenic
CTGCAAAAGGAGAAATTATT+GGG 0.403065 6_3:-90138126 Msa0964050:CDS
ATGCCAAATCCATTTGTGAT+TGG 0.408143 6_3:-90140388 Msa0964050:CDS
TGCAATTATGAATCACCGTT+TGG 0.411539 6_3:+90140733 None:intergenic
AAAGGCTACAGTTCCTGTTT+GGG 0.415981 6_3:-90137543 Msa0964050:CDS
AGAGTTTAAGCAATTAAAAG+AGG 0.416736 6_3:-90138053 Msa0964050:CDS
CAATTCACAATATTCTTAGA+AGG 0.427150 6_3:+90135098 None:intergenic
CGGCTACGGGCTAATGCAAA+TGG 0.429884 6_3:-90138151 Msa0964050:CDS
AATCCATTTGTGATTGGATC+AGG 0.430806 6_3:-90140382 Msa0964050:CDS
CTCTGAAATATCAGTTATGT+TGG 0.442627 6_3:+90137508 None:intergenic
GCAAGGGTTGCTCTAAGTTC+AGG 0.458325 6_3:-90136670 Msa0964050:CDS
GGAGTCATCTTAGCCCAAAC+AGG 0.459815 6_3:+90137530 None:intergenic
TTCATTGGATTGGTCTAGGA+AGG 0.462264 6_3:-90140506 Msa0964050:CDS
ATCGATAGAGTCGAACAAAC+TGG 0.464817 6_3:-90137962 Msa0964050:CDS
AACCCCTCAACGCAAGGCTC+AGG 0.469526 6_3:+90136580 None:intergenic
TATTCACTTTCTGCTATTGG+TGG 0.475181 6_3:-90136365 Msa0964050:CDS
CATGCACGTCCTAGTAGAGT+TGG 0.475768 6_3:-90140481 Msa0964050:CDS
GGTATGCCGGAGCGCAAAAT+GGG 0.481117 6_3:-90137623 Msa0964050:CDS
TGTGAAAGAAAGTGAAAGCA+TGG 0.486791 6_3:-90135242 Msa0964050:CDS
TCTTGGTGCAAATACTGTCC+AGG 0.487074 6_3:-90136306 Msa0964050:intron
GCAAAATGGGTGCTGCTGTT+GGG 0.487510 6_3:-90137610 Msa0964050:CDS
TTTAAATTGCAGGTGTGCAC+TGG 0.491165 6_3:-90135679 Msa0964050:intron
AATTCTCATCGCTTCAATCA+TGG 0.491371 6_3:-90138017 Msa0964050:CDS
GGACCTGATCCAATCACAAA+TGG 0.496107 6_3:+90140379 None:intergenic
AAAGAGCCTTTGATGAAGGT+TGG 0.497584 6_3:-90140330 Msa0964050:CDS
CATTTGCATTAGCCCGTAGC+CGG 0.499385 6_3:+90138152 None:intergenic
CAAAGGAAAGCCATAAAGAA+AGG 0.501819 6_3:-90135301 Msa0964050:CDS
TTGGATGAGTAAGCATTTGG+AGG 0.501821 6_3:+90140752 None:intergenic
ATGCACGTCCTAGTAGAGTT+GGG 0.505524 6_3:-90140480 Msa0964050:CDS
TCTGAAATATCAGTTATGTT+GGG 0.506589 6_3:+90137509 None:intergenic
GTGATTGGATCAGGTCCACC+TGG 0.507691 6_3:-90140373 Msa0964050:CDS
TTTGTTAGGTACTCAACTCC+AGG 0.511040 6_3:-90136479 Msa0964050:intron
GCAGTTCATCCGATAGCACT+TGG 0.512671 6_3:-90136440 Msa0964050:CDS
GGCGTTATGATGCATGGCTA+TGG 0.516244 6_3:-90135658 Msa0964050:CDS
CTTTCTGCAAGATTCAGAAA+AGG 0.520638 6_3:+90140602 None:intergenic
CTCATGTCCTCATGGTATGC+CGG 0.520822 6_3:-90137636 Msa0964050:CDS
AATACAATCATGAGCGTCAT+GGG 0.525192 6_3:-90136625 Msa0964050:CDS
AAATACAATCATGAGCGTCA+TGG 0.529657 6_3:-90136626 Msa0964050:CDS
GCTTGCAATCTGATAAAGAC+TGG 0.530476 6_3:-90135279 Msa0964050:CDS
ACGTCCTGAGCCTTGCGTTG+AGG 0.531564 6_3:-90136584 Msa0964050:CDS
AGAACTAGCAATTCTGCACC+TGG 0.533573 6_3:-90140532 Msa0964050:CDS
ATAACCTTCCCAAGTGCTAT+CGG 0.533776 6_3:+90136431 None:intergenic
ATGTAACTCCTCGTTATGCC+CGG 0.535192 6_3:-90138171 Msa0964050:CDS
GATAAAGACTGGACAGGAGA+TGG 0.535548 6_3:-90135268 Msa0964050:CDS
AATGCAAATGGATCTGCAAA+AGG 0.536497 6_3:-90138139 Msa0964050:CDS
CAATCTGATAAAGACTGGAC+AGG 0.536629 6_3:-90135274 Msa0964050:CDS
TTCTTGAAGAAGTTTGTGGA+TGG 0.536809 6_3:-90137574 Msa0964050:CDS
ATGAAAAGAGCCTTTGATGA+AGG 0.541144 6_3:-90140334 Msa0964050:CDS
AGAGCCTTTGATGAAGGTTG+GGG 0.541495 6_3:-90140328 Msa0964050:CDS
GTTTCTGTTTGTAGCCAGCA+AGG 0.542946 6_3:-90136687 Msa0964050:intron
TGCTCTAAGTTCAGGATGCG+AGG 0.553949 6_3:-90136662 Msa0964050:CDS
ATAAACTTCTCATGTCCTCA+TGG 0.555561 6_3:-90137644 Msa0964050:CDS
TCTTGCAAATGAAGTGGTGA+AGG 0.566366 6_3:-90135160 Msa0964050:three_prime_UTR
TGCACTGGCGTTATGATGCA+TGG 0.570814 6_3:-90135664 Msa0964050:CDS
CACACACTGACTTGGTGCAA+AGG 0.573029 6_3:-90135342 Msa0964050:CDS
TTTCTGTTTGTAGCCAGCAA+GGG 0.576556 6_3:-90136686 Msa0964050:intron
TTAACAGTAACACTCAGATC+AGG 0.578177 6_3:+90140421 None:intergenic
ATAACAGTATAATTAGTCCC+AGG 0.587291 6_3:+90140355 None:intergenic
GTCCTGAGCCTTGCGTTGAG+GGG 0.588189 6_3:-90136582 Msa0964050:intron
TATAGCTCTTGCAAATGAAG+TGG 0.590555 6_3:-90135166 Msa0964050:three_prime_UTR
ACCGCCCCAACCTTCATCAA+AGG 0.598376 6_3:+90140324 None:intergenic
ATTGCCAACCCCTCAACGCA+AGG 0.601265 6_3:+90136574 None:intergenic
TGATTGGATCAGGTCCACCT+GGG 0.601497 6_3:-90140372 Msa0964050:CDS
AGGTGATTCTGAATCTGAGT+TGG 0.601983 6_3:+90140663 None:intergenic
CATCAATAGAAGATTTCAGA+GGG 0.602379 6_3:-90135579 Msa0964050:intron
GCCTTTGATGAAGGTTGGGG+CGG 0.602777 6_3:-90140325 Msa0964050:CDS
AGAGTACAATAAAGCCGCAT+GGG 0.602901 6_3:-90137993 Msa0964050:CDS
CAACATAACTGATATTTCAG+AGG 0.605943 6_3:-90137507 Msa0964050:intron
AGAATTGCTAGTTCTCATCT+GGG 0.607718 6_3:+90140540 None:intergenic
AGCAAGAAGCAATTAAGCAA+AGG 0.608908 6_3:-90135318 Msa0964050:CDS
TCTTTCAACATGGTTTCAAG+CGG 0.612116 6_3:+90138073 None:intergenic
AAGAGTACAATAAAGCCGCA+TGG 0.612930 6_3:-90137994 Msa0964050:CDS
CAAATGCTTACTCATCCAAA+CGG 0.613014 6_3:-90140748 Msa0964050:five_prime_UTR
TTGTGGATGGATAAATGCAA+AGG 0.617242 6_3:-90137561 Msa0964050:CDS
ACATCAATAGAAGATTTCAG+AGG 0.619025 6_3:-90135580 Msa0964050:CDS
CAGTTCATCCGATAGCACTT+GGG 0.631187 6_3:-90136439 Msa0964050:CDS
GTACAATAAAGCCGCATGGG+AGG 0.631532 6_3:-90137990 Msa0964050:CDS
TCATCCGATAGCACTTGGGA+AGG 0.632133 6_3:-90136435 Msa0964050:CDS
GCCCGTAGCCGGGCATAACG+AGG 0.632333 6_3:+90138163 None:intergenic
ATCGATAAGCTCCTCCCATG+CGG 0.636350 6_3:+90137979 None:intergenic
AAGCGATGAGAATTCTATCA+GGG 0.636759 6_3:+90138026 None:intergenic
TTGCTTAAACTCTTTCAACA+TGG 0.637483 6_3:+90138063 None:intergenic
GCTCTAAGTTCAGGATGCGA+GGG 0.640142 6_3:-90136661 Msa0964050:CDS
GAACTAGCAATTCTGCACCT+GGG 0.647996 6_3:-90140531 Msa0964050:CDS
GCCATGAAAGTTGATGATGA+TGG 0.648057 6_3:+90135011 None:intergenic
CAAAAGGAGAAATTATTGGG+TGG 0.669484 6_3:-90138123 Msa0964050:CDS
ATTGGTGGTGTTGAGACTGG+TGG 0.671887 6_3:-90136350 Msa0964050:CDS
GACCAATCCAATGAAAACCC+AGG 0.680757 6_3:+90140514 None:intergenic
ACAGTATAATTAGTCCCAGG+TGG 0.689168 6_3:+90140358 None:intergenic
GTTAGGTACTCAACTCCAGG+TGG 0.710353 6_3:-90136476 Msa0964050:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGATTTTTAATTTTTAGT+TGG + chr6_3:90134988-90135007 None:intergenic 10.0%
!! TATTTATAAGATTATGATTA+AGG + chr6_3:90135012-90135031 None:intergenic 10.0%
!! GGTAATATTATAATATTATA+TGG + chr6_3:90135160-90135179 None:intergenic 10.0%
!! ATATTTCATATTTCATTATA+AGG + chr6_3:90137490-90137509 None:intergenic 10.0%
!!! AAATTTTGAATAAAAATTAC+AGG - chr6_3:90140454-90140473 Msa0964050:CDS 10.0%
!!! AATTTTGAATAAAAATTACA+GGG - chr6_3:90140455-90140474 Msa0964050:CDS 10.0%
!!! TCAATTTTTTCCTTAAAAAA+TGG - chr6_3:90135263-90135282 Msa0964050:CDS 15.0%
!!! TTATTGGTTAAAATTCATAT+GGG + chr6_3:90137076-90137095 None:intergenic 15.0%
!!! TTTATTGGTTAAAATTCATA+TGG + chr6_3:90137077-90137096 None:intergenic 15.0%
!!! ATTTGATTATTTGTTTTGTT+AGG - chr6_3:90137620-90137639 Msa0964050:CDS 15.0%
!!! AAAAGAATATCAAAATTTTC+AGG + chr6_3:90138163-90138182 None:intergenic 15.0%
!!! GAAAATTTTGATATTCTTTT+AGG - chr6_3:90138163-90138182 Msa0964050:CDS 15.0%
!!! TGAAAAACAAATATCATTTT+TGG + chr6_3:90138556-90138575 None:intergenic 15.0%
!!! TTTGTTTTTCACAAAATTAA+AGG - chr6_3:90138565-90138584 Msa0964050:intron 15.0%
!! AAAATAAATAAATCAGAATC+TGG - chr6_3:90138916-90138935 Msa0964050:intron 15.0%
!!! AATTTGTCAAAAATTTTGTT+AGG - chr6_3:90139348-90139367 Msa0964050:intron 15.0%
!!! TCAAAACTTTTATAAATACA+TGG - chr6_3:90140292-90140311 Msa0964050:intron 15.0%
!!! ATATGATTTTCTTTATTGTT+TGG + chr6_3:90140334-90140353 None:intergenic 15.0%
!!! ATTGTGAATTGTTTTATATT+AGG - chr6_3:90140755-90140774 Msa0964050:five_prime_UTR 15.0%
!! AAATAATGATTTCACGAATT+CGG - chr6_3:90135659-90135678 Msa0964050:CDS 20.0%
!!! TTGTTCCATTTTTGTTTTTT+GGG + chr6_3:90136294-90136313 None:intergenic 20.0%
!!! TTTGTTCCATTTTTGTTTTT+TGG + chr6_3:90136295-90136314 None:intergenic 20.0%
!!! TTTCCAATACACTTTTTTAT+CGG - chr6_3:90136989-90137008 Msa0964050:intron 20.0%
!!! GTTCTTTTAACCATATTTTA+AGG - chr6_3:90138371-90138390 Msa0964050:intron 20.0%
!! TTCTTAAACACCTTAAAATA+TGG + chr6_3:90138384-90138403 None:intergenic 20.0%
! CTGGAAATATTGTAAAGAAT+TGG + chr6_3:90135064-90135083 None:intergenic 25.0%
!!! TATGGATTTTGATTAGTGAT+TGG + chr6_3:90135142-90135161 None:intergenic 25.0%
! AGAAACAGAAAAAGAATAAG+AGG + chr6_3:90135201-90135220 None:intergenic 25.0%
!!! CTTAAATTCGCCATTTTTTA+AGG + chr6_3:90135276-90135295 None:intergenic 25.0%
! CTTGATTAATGTAATTGTCA+TGG - chr6_3:90135632-90135651 Msa0964050:CDS 25.0%
!! TCATTGTTTCTTCATAATGT+TGG - chr6_3:90135795-90135814 Msa0964050:intron 25.0%
!! CATTGTTTCTTCATAATGTT+GGG - chr6_3:90135796-90135815 Msa0964050:intron 25.0%
!! ATTGTTTCTTCATAATGTTG+GGG - chr6_3:90135797-90135816 Msa0964050:intron 25.0%
! TTATTAGTAATACATGTGCA+TGG - chr6_3:90135898-90135917 Msa0964050:intron 25.0%
! AATATATCACATAGAGCTTA+TGG + chr6_3:90136052-90136071 None:intergenic 25.0%
!!! TCATAAAAGTGTTGATGTTT+TGG + chr6_3:90136588-90136607 None:intergenic 25.0%
!!! TCAATACAAAAGTGCTTAAA+TGG - chr6_3:90136646-90136665 Msa0964050:CDS 25.0%
!! TGCTTTTCTGACTATTAAAA+TGG - chr6_3:90136839-90136858 Msa0964050:intron 25.0%
! CACATTGTTTAGAGAAAAAA+GGG + chr6_3:90136879-90136898 None:intergenic 25.0%
! TCACATTGTTTAGAGAAAAA+AGG + chr6_3:90136880-90136899 None:intergenic 25.0%
!! TAACCGATAAAAAAGTGTAT+TGG + chr6_3:90136995-90137014 None:intergenic 25.0%
!! TTATCGGTTAAATTTCACAT+CGG - chr6_3:90137005-90137024 Msa0964050:intron 25.0%
! ATGTGAATCCCATATAAATT+TGG - chr6_3:90137040-90137059 Msa0964050:intron 25.0%
! ATTAAGGAAAAAACTGTCTT+TGG + chr6_3:90137154-90137173 None:intergenic 25.0%
! TTGTCAAATTACAGATATAG+TGG + chr6_3:90137351-90137370 None:intergenic 25.0%
! TCATATTTCATTATAAGGTC+AGG + chr6_3:90137485-90137504 None:intergenic 25.0%
! AGAGTTTAAGCAATTAAAAG+AGG - chr6_3:90137788-90137807 Msa0964050:intron 25.0%
!!! TAGTTCGGTTTTTAAAACAT+AGG + chr6_3:90137954-90137973 None:intergenic 25.0%
! TATAGTTCAACCTCTTTAAA+TGG - chr6_3:90138001-90138020 Msa0964050:CDS 25.0%
!! TCTGAAATATCAGTTATGTT+GGG + chr6_3:90138335-90138354 None:intergenic 25.0%
!!! ATTTTAAGGTGTTTAAGAAG+TGG - chr6_3:90138385-90138404 Msa0964050:intron 25.0%
! TTGTCGAATTATCAAATTTC+TGG - chr6_3:90138412-90138431 Msa0964050:intron 25.0%
!! TGTTTAAAGTTTAAATGCAC+AGG + chr6_3:90138591-90138610 None:intergenic 25.0%
! AACAGTTTCTCAAAATAAGT+TGG - chr6_3:90138682-90138701 Msa0964050:intron 25.0%
!!! TTGTGTAGAAAGTCATTTTT+AGG + chr6_3:90138768-90138787 None:intergenic 25.0%
! GTTAAAAGACAAATCAAGAT+CGG - chr6_3:90138802-90138821 Msa0964050:intron 25.0%
! AAAATATCGAGCTTGAAATA+TGG + chr6_3:90138888-90138907 None:intergenic 25.0%
! TCAATATCAAGGATCAAATA+GGG + chr6_3:90139793-90139812 None:intergenic 25.0%
! TTCAATATCAAGGATCAAAT+AGG + chr6_3:90139794-90139813 None:intergenic 25.0%
!! TTTTCTTTATTGTTTGGATG+AGG + chr6_3:90140328-90140347 None:intergenic 25.0%
! CAATTCACAATATTCTTAGA+AGG + chr6_3:90140746-90140765 None:intergenic 25.0%
! GCTTAAAAATCACATATTTG+AGG + chr6_3:90140858-90140877 None:intergenic 25.0%
!!! CAAATATGTGATTTTTAAGC+TGG - chr6_3:90140858-90140877 Msa0964050:five_prime_UTR 25.0%
AAAAGGAAGAAGAAAAACAG+AGG + chr6_3:90135225-90135244 None:intergenic 30.0%
ATAACAGTATAATTAGTCCC+AGG + chr6_3:90135489-90135508 None:intergenic 30.0%
!! AAGTTGAGTGTTTGATTTGT+TGG - chr6_3:90135856-90135875 Msa0964050:intron 30.0%
ACTTATGATACAATGCTTAC+AGG - chr6_3:90135985-90136004 Msa0964050:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr6_3:90136028-90136047 None:intergenic 30.0%
TGGGAAAAAAAATACACACA+AGG - chr6_3:90136216-90136235 Msa0964050:intron 30.0%
GGGAAAAAAAATACACACAA+GGG - chr6_3:90136217-90136236 Msa0964050:intron 30.0%
GGAAAAAAAATACACACAAG+GGG - chr6_3:90136218-90136237 Msa0964050:intron 30.0%
!!! TTTTTTGGGTGGTTTTTAAG+GGG + chr6_3:90136280-90136299 None:intergenic 30.0%
!!! GTTTTTTGGGTGGTTTTTAA+GGG + chr6_3:90136281-90136300 None:intergenic 30.0%
!!! TGTTTTTTGGGTGGTTTTTA+AGG + chr6_3:90136282-90136301 None:intergenic 30.0%
AACCACCCAAAAAACAAAAA+TGG - chr6_3:90136286-90136305 Msa0964050:intron 30.0%
!!! TTCCATTTTTGTTTTTTGGG+TGG + chr6_3:90136291-90136310 None:intergenic 30.0%
!!! TAAAAGTGTTGATGTTTTGG+TGG + chr6_3:90136585-90136604 None:intergenic 30.0%
!! TACAAAAGTGCTTAAATGGT+TGG - chr6_3:90136650-90136669 Msa0964050:CDS 30.0%
CAAAACAAAACCACAAAAGA+TGG + chr6_3:90136681-90136700 None:intergenic 30.0%
TTTGCATGACTTATGTTGAA+AGG - chr6_3:90136697-90136716 Msa0964050:intron 30.0%
TTGCATGACTTATGTTGAAA+GGG - chr6_3:90136698-90136717 Msa0964050:intron 30.0%
!!! ACATTTTGTTTGTACCGATT+AGG - chr6_3:90136731-90136750 Msa0964050:intron 30.0%
! TACTCATGTATTGTTTCTTG+AGG - chr6_3:90136787-90136806 Msa0964050:intron 30.0%
TGAATCCCATATAAATTTGG+CGG - chr6_3:90137043-90137062 Msa0964050:intron 30.0%
! TAACCAATAAAAGAGTGTGT+TGG - chr6_3:90137086-90137105 Msa0964050:intron 30.0%
! TTTCCAACACACTCTTTTAT+TGG + chr6_3:90137092-90137111 None:intergenic 30.0%
AGCAAACAGAACAGTTATAA+CGG + chr6_3:90137525-90137544 None:intergenic 30.0%
! ATAACTGTTCTGTTTGCTTT+TGG - chr6_3:90137527-90137546 Msa0964050:CDS 30.0%
TCTGCAAAAGGAGAAATTAT+TGG - chr6_3:90137714-90137733 Msa0964050:intron 30.0%
CTGCAAAAGGAGAAATTATT+GGG - chr6_3:90137715-90137734 Msa0964050:intron 30.0%
TTGCTTAAACTCTTTCAACA+TGG + chr6_3:90137781-90137800 None:intergenic 30.0%
TAACTGTACGTAGTAAAAAC+TGG - chr6_3:90138061-90138080 Msa0964050:CDS 30.0%
!! CTCTGAAATATCAGTTATGT+TGG + chr6_3:90138336-90138355 None:intergenic 30.0%
CAACATAACTGATATTTCAG+AGG - chr6_3:90138334-90138353 Msa0964050:intron 30.0%
ATAACTGATATTTCAGAGGT+TGG - chr6_3:90138338-90138357 Msa0964050:intron 30.0%
TAGGAACTCTTCAGATATTT+GGG + chr6_3:90138749-90138768 None:intergenic 30.0%
TTAGGAACTCTTCAGATATT+TGG + chr6_3:90138750-90138769 None:intergenic 30.0%
GAACAATTTCACATGCAAAA+GGG + chr6_3:90139059-90139078 None:intergenic 30.0%
AGAACAATTTCACATGCAAA+AGG + chr6_3:90139060-90139079 None:intergenic 30.0%
ATTCACATCTGCTAAGTAAA+GGG + chr6_3:90139088-90139107 None:intergenic 30.0%
AATTCACATCTGCTAAGTAA+AGG + chr6_3:90139089-90139108 None:intergenic 30.0%
CTCACTTACATCAAATTCAT+TGG - chr6_3:90139290-90139309 Msa0964050:intron 30.0%
AACTATTCACTTTCTGCTAT+TGG - chr6_3:90139473-90139492 Msa0964050:intron 30.0%
!! TATAAAGTGTTGGTGTTACA+AGG + chr6_3:90139585-90139604 None:intergenic 30.0%
ACGACTTCAATATAAAGTGT+TGG + chr6_3:90139595-90139614 None:intergenic 30.0%
!! AAATATAGGAAGCACTAACA+CGG + chr6_3:90139689-90139708 None:intergenic 30.0%
!! TCAAGACGGACTAAAAATAT+AGG + chr6_3:90139703-90139722 None:intergenic 30.0%
! GATGATCTTGTTTAAATTGC+AGG - chr6_3:90140152-90140171 Msa0964050:intron 30.0%
ACATCAATAGAAGATTTCAG+AGG - chr6_3:90140261-90140280 Msa0964050:intron 30.0%
CATCAATAGAAGATTTCAGA+GGG - chr6_3:90140262-90140281 Msa0964050:intron 30.0%
TATTGTTTGGATGAGGAAAT+TGG + chr6_3:90140321-90140340 None:intergenic 30.0%
! AATTGGACTTTTGCATGTGA+GGG + chr6_3:90135047-90135066 None:intergenic 35.0%
TAAGCATTTGGAGGATTATC+TGG + chr6_3:90135083-90135102 None:intergenic 35.0%
CAAATGCTTACTCATCCAAA+CGG - chr6_3:90135093-90135112 Msa0964050:three_prime_UTR 35.0%
TGCAATTATGAATCACCGTT+TGG + chr6_3:90135111-90135130 None:intergenic 35.0%
CTTTCTGCAAGATTCAGAAA+AGG + chr6_3:90135242-90135261 None:intergenic 35.0%
! AGAATTGCTAGTTCTCATCT+GGG + chr6_3:90135304-90135323 None:intergenic 35.0%
! ATTTTGAACCCAACTCTACT+AGG + chr6_3:90135372-90135391 None:intergenic 35.0%
TTAACAGTAACACTCAGATC+AGG + chr6_3:90135423-90135442 None:intergenic 35.0%
! GATCTGAGTGTTACTGTTAA+TGG - chr6_3:90135423-90135442 Msa0964050:intron 35.0%
ATGCCAAATCCATTTGTGAT+TGG - chr6_3:90135453-90135472 Msa0964050:intron 35.0%
! GATCCAATCACAAATGGATT+TGG + chr6_3:90135459-90135478 None:intergenic 35.0%
AATCCATTTGTGATTGGATC+AGG - chr6_3:90135459-90135478 Msa0964050:intron 35.0%
ATGAAAAGAGCCTTTGATGA+AGG - chr6_3:90135507-90135526 Msa0964050:intron 35.0%
!! TTGAGTGTTTGATTTGTTGG+TGG - chr6_3:90135859-90135878 Msa0964050:intron 35.0%
!! TGAGTGTTTGATTTGTTGGT+GGG - chr6_3:90135860-90135879 Msa0964050:intron 35.0%
AAATACACACAAGGGGAAAT+TGG - chr6_3:90136225-90136244 Msa0964050:intron 35.0%
!! GGTTTTTAAGGGGTTTTTGT+TGG + chr6_3:90136270-90136289 None:intergenic 35.0%
!! GGTTTGTTTTTCAAAGGGTT+TGG + chr6_3:90136508-90136527 None:intergenic 35.0%
!!! AGGTCGGTTTGTTTTTCAAA+GGG + chr6_3:90136513-90136532 None:intergenic 35.0%
! GTTGGTATTTCCATCTTTTG+TGG - chr6_3:90136668-90136687 Msa0964050:CDS 35.0%
!! TTGTTTGTACCGATTAGGAA+AGG - chr6_3:90136736-90136755 Msa0964050:intron 35.0%
!! TGTTTGTACCGATTAGGAAA+GGG - chr6_3:90136737-90136756 Msa0964050:intron 35.0%
GATCTGTATGATGCTAATTG+TGG - chr6_3:90136809-90136828 Msa0964050:intron 35.0%
AATGTGAGAGTGAGTTGTAA+AGG - chr6_3:90136893-90136912 Msa0964050:intron 35.0%
!! TTGTAAAGGAGTCTTGTTCT+TGG - chr6_3:90136907-90136926 Msa0964050:intron 35.0%
! AATGTGTTTGAGAGTGTGTT+GGG + chr6_3:90136968-90136987 None:intergenic 35.0%
TGGGATTCACATGATTTGAT+GGG + chr6_3:90137032-90137051 None:intergenic 35.0%
ATGGGATTCACATGATTTGA+TGG + chr6_3:90137033-90137052 None:intergenic 35.0%
GAATCCCATATAAATTTGGC+GGG - chr6_3:90137044-90137063 Msa0964050:intron 35.0%
TGTAATACAACTGAATGCAC+AGG + chr6_3:90137256-90137275 None:intergenic 35.0%
TTTGTTCAAATTCCTCTGTG+CGG - chr6_3:90137310-90137329 Msa0964050:intron 35.0%
AATGCAAATGGATCTGCAAA+AGG - chr6_3:90137702-90137721 Msa0964050:intron 35.0%
CAAAAGGAGAAATTATTGGG+TGG - chr6_3:90137718-90137737 Msa0964050:intron 35.0%
TCTTTCAACATGGTTTCAAG+CGG + chr6_3:90137771-90137790 None:intergenic 35.0%
AAGCGATGAGAATTCTATCA+GGG + chr6_3:90137818-90137837 None:intergenic 35.0%
AATTCTCATCGCTTCAATCA+TGG - chr6_3:90137824-90137843 Msa0964050:intron 35.0%
GAGTTGTAAGATGTGTTTCT+TGG - chr6_3:90137901-90137920 Msa0964050:intron 35.0%
! TTACTTTGATGGTTCAATCG+CGG + chr6_3:90138044-90138063 None:intergenic 35.0%
! ACTACGTACAGTTACTTTGA+TGG + chr6_3:90138055-90138074 None:intergenic 35.0%
! ACGTAGTAAAAACTGGTTCA+AGG - chr6_3:90138068-90138087 Msa0964050:CDS 35.0%
!!! CAGGTCAGATTTTTCAAGAT+AGG + chr6_3:90138144-90138163 None:intergenic 35.0%
ATAAACTTCTCATGTCCTCA+TGG - chr6_3:90138197-90138216 Msa0964050:CDS 35.0%
TTCTTGAAGAAGTTTGTGGA+TGG - chr6_3:90138267-90138286 Msa0964050:intron 35.0%
TTGTGGATGGATAAATGCAA+AGG - chr6_3:90138280-90138299 Msa0964050:intron 35.0%
! AACGTAAAGCTTGTTTGGTT+GGG + chr6_3:90139026-90139045 None:intergenic 35.0%
! AGAAGAACGTAAAGCTTGTT+TGG + chr6_3:90139031-90139050 None:intergenic 35.0%
AAATACAATCATGAGCGTCA+TGG - chr6_3:90139215-90139234 Msa0964050:intron 35.0%
AATACAATCATGAGCGTCAT+GGG - chr6_3:90139216-90139235 Msa0964050:intron 35.0%
TATTCACTTTCTGCTATTGG+TGG - chr6_3:90139476-90139495 Msa0964050:intron 35.0%
TGTAGTCACATTCAATCACT+TGG - chr6_3:90139660-90139679 Msa0964050:intron 35.0%
TACCATTGTCAGTATCAAGA+CGG + chr6_3:90139717-90139736 None:intergenic 35.0%
TGGTAGGATATTCTTTCCTT+TGG - chr6_3:90139732-90139751 Msa0964050:intron 35.0%
TCCCTTTAACAAGGAGAAAA+GGG + chr6_3:90139763-90139782 None:intergenic 35.0%
TTCCCTTTAACAAGGAGAAA+AGG + chr6_3:90139764-90139783 None:intergenic 35.0%
TATCAAGGATCAAATAGGGA+AGG + chr6_3:90139789-90139808 None:intergenic 35.0%
TTGATCCTTGATATTGAACG+TGG - chr6_3:90139796-90139815 Msa0964050:intron 35.0%
ATGAGATTCTTGCACTCAAT+AGG - chr6_3:90139991-90140010 Msa0964050:intron 35.0%
TGAGATTCTTGCACTCAATA+GGG - chr6_3:90139992-90140011 Msa0964050:intron 35.0%
!! TTTTACTACACACACTGACT+TGG - chr6_3:90140491-90140510 Msa0964050:CDS 35.0%
AGCAAGAAGCAATTAAGCAA+AGG - chr6_3:90140523-90140542 Msa0964050:CDS 35.0%
CAAAGGAAAGCCATAAAGAA+AGG - chr6_3:90140540-90140559 Msa0964050:CDS 35.0%
AGATTGCAAGCCTTTCTTTA+TGG + chr6_3:90140553-90140572 None:intergenic 35.0%
TGTGAAAGAAAGTGAAAGCA+TGG - chr6_3:90140599-90140618 Msa0964050:five_prime_UTR 35.0%
TATAGCTCTTGCAAATGAAG+TGG - chr6_3:90140675-90140694 Msa0964050:five_prime_UTR 35.0%
ACCATCATCATCAACTTTCA+TGG - chr6_3:90140829-90140848 Msa0964050:five_prime_UTR 35.0%
! GAATTGGACTTTTGCATGTG+AGG + chr6_3:90135048-90135067 None:intergenic 40.0%
TTGGATGAGTAAGCATTTGG+AGG + chr6_3:90135092-90135111 None:intergenic 40.0%
CGTTTGGATGAGTAAGCATT+TGG + chr6_3:90135095-90135114 None:intergenic 40.0%
AGGTGATTCTGAATCTGAGT+TGG + chr6_3:90135181-90135200 None:intergenic 40.0%
! CAGAATTGCTAGTTCTCATC+TGG + chr6_3:90135305-90135324 None:intergenic 40.0%
!!! GGTTTTCATTGGATTGGTCT+AGG - chr6_3:90135331-90135350 Msa0964050:CDS 40.0%
!! TTCATTGGATTGGTCTAGGA+AGG - chr6_3:90135335-90135354 Msa0964050:CDS 40.0%
ACAGTATAATTAGTCCCAGG+TGG + chr6_3:90135486-90135505 None:intergenic 40.0%
AAAGAGCCTTTGATGAAGGT+TGG - chr6_3:90135511-90135530 Msa0964050:intron 40.0%
AAGAGCCTTTGATGAAGGTT+GGG - chr6_3:90135512-90135531 Msa0964050:intron 40.0%
GAATACTGCATTGCAGATTG+CGG - chr6_3:90135689-90135708 Msa0964050:intron 40.0%
AATTGGTTGCCGTACAAACA+TGG - chr6_3:90136242-90136261 Msa0964050:intron 40.0%
TTGTTGGAGCCATGTTTGTA+CGG + chr6_3:90136254-90136273 None:intergenic 40.0%
!!! TGGCATCTGTTTTTGTTGTG+CGG + chr6_3:90136440-90136459 None:intergenic 40.0%
!!! CAGGTCGGTTTGTTTTTCAA+AGG + chr6_3:90136514-90136533 None:intergenic 40.0%
TTGTTCTTGGCTTCTTGCTA+TGG - chr6_3:90136920-90136939 Msa0964050:intron 40.0%
! GAATGTGTTTGAGAGTGTGT+TGG + chr6_3:90136969-90136988 None:intergenic 40.0%
CCATCCCGCCAAATTTATAT+GGG + chr6_3:90137051-90137070 None:intergenic 40.0%
CCATATAAATTTGGCGGGAT+GGG - chr6_3:90137049-90137068 Msa0964050:intron 40.0%
TTACACATTGTTCTCAACCG+CGG - chr6_3:90137271-90137290 Msa0964050:intron 40.0%
GAAGCGATGAGAATTCTATC+AGG + chr6_3:90137819-90137838 None:intergenic 40.0%
! AAGAGTACAATAAAGCCGCA+TGG - chr6_3:90137847-90137866 Msa0964050:intron 40.0%
AGAGTACAATAAAGCCGCAT+GGG - chr6_3:90137848-90137867 Msa0964050:intron 40.0%
ATCGATAGAGTCGAACAAAC+TGG - chr6_3:90137879-90137898 Msa0964050:intron 40.0%
GAGGTTGAACTATAACACGA+AGG + chr6_3:90137995-90138014 None:intergenic 40.0%
CTTGTTCAGGCCATTTAAAG+AGG + chr6_3:90138014-90138033 None:intergenic 40.0%
CTCTTTAAATGGCCTGAACA+AGG - chr6_3:90138012-90138031 Msa0964050:CDS 40.0%
AAAACCGAACCAGACATCAA+CGG + chr6_3:90138100-90138119 None:intergenic 40.0%
GCTCTTCTTGAAGAAGTTTG+TGG - chr6_3:90138263-90138282 Msa0964050:intron 40.0%
AAAGGCTACAGTTCCTGTTT+GGG - chr6_3:90138298-90138317 Msa0964050:intron 40.0%
AGTAGTACATCAGTTGCCAT+TGG - chr6_3:90138846-90138865 Msa0964050:intron 40.0%
AGTTGCCATTGGATCAAGAT+CGG - chr6_3:90138857-90138876 Msa0964050:intron 40.0%
ATTGTCCGATCTTGATCCAA+TGG + chr6_3:90138865-90138884 None:intergenic 40.0%
TCAGAATCTGGTGTACCATT+TGG - chr6_3:90138928-90138947 Msa0964050:intron 40.0%
! ACGTAAAGCTTGTTTGGTTG+GGG + chr6_3:90139025-90139044 None:intergenic 40.0%
! GAACGTAAAGCTTGTTTGGT+TGG + chr6_3:90139027-90139046 None:intergenic 40.0%
TTTCTGTTTGTAGCCAGCAA+GGG - chr6_3:90139155-90139174 Msa0964050:intron 40.0%
TTTGTTAGGTACTCAACTCC+AGG - chr6_3:90139362-90139381 Msa0964050:intron 40.0%
ATAACCTTCCCAAGTGCTAT+CGG + chr6_3:90139413-90139432 None:intergenic 40.0%
GCAGCTGAGTTTATTCTTCT+TGG - chr6_3:90139518-90139537 Msa0964050:intron 40.0%
GGTGATTCTTTCATCATACC+TGG + chr6_3:90139556-90139575 None:intergenic 40.0%
!! GTTGGTGTTACAAGGCTAAA+AGG + chr6_3:90139577-90139596 None:intergenic 40.0%
! TGTCTGAAACTGACACATGT+CGG + chr6_3:90139627-90139646 None:intergenic 40.0%
GTCTTGATACTGACAATGGT+AGG - chr6_3:90139716-90139735 Msa0964050:intron 40.0%
TTTAACAAGGAGAAAAGGGG+TGG + chr6_3:90139759-90139778 None:intergenic 40.0%
! ACCCCTTTTCTCCTTGTTAA+AGG - chr6_3:90139758-90139777 Msa0964050:intron 40.0%
CCCTTTAACAAGGAGAAAAG+GGG + chr6_3:90139762-90139781 None:intergenic 40.0%
! CCCCTTTTCTCCTTGTTAAA+GGG - chr6_3:90139759-90139778 Msa0964050:intron 40.0%
!! GGAAGGTATTCCCTTTAACA+AGG + chr6_3:90139772-90139791 None:intergenic 40.0%
AGTAACCAGGCAAAGAATCA+GGG + chr6_3:90139825-90139844 None:intergenic 40.0%
AAGTAACCAGGCAAAGAATC+AGG + chr6_3:90139826-90139845 None:intergenic 40.0%
TGATTCTTTGCCTGGTTACT+TGG - chr6_3:90139825-90139844 Msa0964050:intron 40.0%
GATTCTTTGCCTGGTTACTT+GGG - chr6_3:90139826-90139845 Msa0964050:intron 40.0%
! CTAACGAAAGCATGCTTAGT+GGG - chr6_3:90140020-90140039 Msa0964050:intron 40.0%
! TAACGAAAGCATGCTTAGTG+GGG - chr6_3:90140021-90140040 Msa0964050:intron 40.0%
! TTTGATAGCCTGTTGCTCTT+CGG - chr6_3:90140074-90140093 Msa0964050:intron 40.0%
TTTAAATTGCAGGTGTGCAC+TGG - chr6_3:90140162-90140181 Msa0964050:intron 40.0%
GCTTGCAATCTGATAAAGAC+TGG - chr6_3:90140562-90140581 Msa0964050:CDS 40.0%
CAATCTGATAAAGACTGGAC+AGG - chr6_3:90140567-90140586 Msa0964050:exon 40.0%
TCTTGCAAATGAAGTGGTGA+AGG - chr6_3:90140681-90140700 Msa0964050:five_prime_UTR 40.0%
!! GCCATGAAAGTTGATGATGA+TGG + chr6_3:90140833-90140852 None:intergenic 40.0%
AGAACTAGCAATTCTGCACC+TGG - chr6_3:90135309-90135328 Msa0964050:CDS 45.0%
GAACTAGCAATTCTGCACCT+GGG - chr6_3:90135310-90135329 Msa0964050:CDS 45.0%
! TTCTGCACCTGGGTTTTCAT+TGG - chr6_3:90135320-90135339 Msa0964050:CDS 45.0%
! CACCTGGGTTTTCATTGGAT+TGG - chr6_3:90135325-90135344 Msa0964050:CDS 45.0%
GACCAATCCAATGAAAACCC+AGG + chr6_3:90135330-90135349 None:intergenic 45.0%
ATGCACGTCCTAGTAGAGTT+GGG - chr6_3:90135361-90135380 Msa0964050:CDS 45.0%
GGACCTGATCCAATCACAAA+TGG + chr6_3:90135465-90135484 None:intergenic 45.0%
AGAGCCTTTGATGAAGGTTG+GGG - chr6_3:90135513-90135532 Msa0964050:intron 45.0%
ATTGCAGATTGCGGTCTTTG+CGG - chr6_3:90135698-90135717 Msa0964050:intron 45.0%
CTTATTAGTGCGTCTTGCAC+GGG + chr6_3:90136190-90136209 None:intergenic 45.0%
GCTTATTAGTGCGTCTTGCA+CGG + chr6_3:90136191-90136210 None:intergenic 45.0%
GCAAGACGCACTAATAAGCT+CGG - chr6_3:90136192-90136211 Msa0964050:intron 45.0%
CAAGACGCACTAATAAGCTC+GGG - chr6_3:90136193-90136212 Msa0964050:intron 45.0%
!! GAACAAAAGAGTACTGACGC+TGG - chr6_3:90136308-90136327 Msa0964050:CDS 45.0%
ATCTTCGGCTGCTCTTTAGA+CGG + chr6_3:90136391-90136410 None:intergenic 45.0%
TGGGCTCTTGGTTGTATCTT+CGG + chr6_3:90136406-90136425 None:intergenic 45.0%
!!! ATCTGTTTTTGTTGTGCGGG+AGG + chr6_3:90136436-90136455 None:intergenic 45.0%
!!! GGCATCTGTTTTTGTTGTGC+GGG + chr6_3:90136439-90136458 None:intergenic 45.0%
!! GTCTTGGAGGGTTTTGATCT+TGG + chr6_3:90136460-90136479 None:intergenic 45.0%
CTGTTCACATGTGTCTTGGA+GGG + chr6_3:90136472-90136491 None:intergenic 45.0%
! TTTTCAAAGGGTTTGGCTGC+TGG + chr6_3:90136501-90136520 None:intergenic 45.0%
CAATCTTCCTTCTGCTGTCT+CGG + chr6_3:90136543-90136562 None:intergenic 45.0%
!!! GTGTTGATGTTTTGGTGGCA+GGG + chr6_3:90136580-90136599 None:intergenic 45.0%
!!! AGTGTTGATGTTTTGGTGGC+AGG + chr6_3:90136581-90136600 None:intergenic 45.0%
TCGCATGACCCTTTCCTAAT+CGG + chr6_3:90136748-90136767 None:intergenic 45.0%
CCCATATAAATTTGGCGGGA+TGG - chr6_3:90137048-90137067 Msa0964050:intron 45.0%
CCCATCCCGCCAAATTTATA+TGG + chr6_3:90137052-90137071 None:intergenic 45.0%
GCAAACAACTCGCTGTATCT+CGG - chr6_3:90137188-90137207 Msa0964050:intron 45.0%
GCTCTAGCACTATAGAGTAG+CGG + chr6_3:90137424-90137443 None:intergenic 45.0%
ATGTAACTCCTCGTTATGCC+CGG - chr6_3:90137670-90137689 Msa0964050:intron 45.0%
AACCGAACTAGACATCGATC+CGG - chr6_3:90137964-90137983 Msa0964050:CDS 45.0%
!! TCGCGGTTTTATCCTTGTTC+AGG + chr6_3:90138027-90138046 None:intergenic 45.0%
AAACCGAACCAGACATCAAC+GGG + chr6_3:90138099-90138118 None:intergenic 45.0%
CAAAGGCTACAGTTCCTGTT+TGG - chr6_3:90138297-90138316 Msa0964050:intron 45.0%
TCGAGATCAGATGGTCCAAA+TGG + chr6_3:90138946-90138965 None:intergenic 45.0%
GTTGTTGGATCGAGATCAGA+TGG + chr6_3:90138955-90138974 None:intergenic 45.0%
! CGTAAAGCTTGTTTGGTTGG+GGG + chr6_3:90139024-90139043 None:intergenic 45.0%
GTTTCTGTTTGTAGCCAGCA+AGG - chr6_3:90139154-90139173 Msa0964050:intron 45.0%
! GCTTTTGCAGAATAACCACC+TGG + chr6_3:90139383-90139402 None:intergenic 45.0%
CAGTTCATCCGATAGCACTT+GGG - chr6_3:90139402-90139421 Msa0964050:intron 45.0%
! TCTTGGTGCAAATACTGTCC+AGG - chr6_3:90139535-90139554 Msa0964050:intron 45.0%
TGTGACTACATGTGTCGTGT+CGG + chr6_3:90139650-90139669 None:intergenic 45.0%
GTCCGTCTTGATACTGACAA+TGG - chr6_3:90139712-90139731 Msa0964050:intron 45.0%
GGGATCCACGTTCAATATCA+AGG + chr6_3:90139804-90139823 None:intergenic 45.0%
GTAACCAGGCAAAGAATCAG+GGG + chr6_3:90139824-90139843 None:intergenic 45.0%
ACCACTATTCCCAAGTAACC+AGG + chr6_3:90139838-90139857 None:intergenic 45.0%
CCACTAAGCATGCTTTCGTT+AGG + chr6_3:90140022-90140041 None:intergenic 45.0%
! CCTAACGAAAGCATGCTTAG+TGG - chr6_3:90140019-90140038 Msa0964050:intron 45.0%
GATAAAGACTGGACAGGAGA+TGG - chr6_3:90140573-90140592 Msa0964050:exon 45.0%
!!! TATTTTATTTTTTTTTGAAT+TGG - chr6_3:90136143-90136162 Msa0964050:intron 5.0%
CATGCACGTCCTAGTAGAGT+TGG - chr6_3:90135360-90135379 Msa0964050:CDS 50.0%
TGATTGGATCAGGTCCACCT+GGG - chr6_3:90135469-90135488 Msa0964050:intron 50.0%
ACGCACTAATAAGCTCGGGT+GGG - chr6_3:90136197-90136216 Msa0964050:intron 50.0%
GCTGTTCACATGTGTCTTGG+AGG + chr6_3:90136473-90136492 None:intergenic 50.0%
!!! GTGGCAGGGTGGTTTTGTTT+TGG + chr6_3:90136566-90136585 None:intergenic 50.0%
!!! TTGATGTTTTGGTGGCAGGG+TGG + chr6_3:90136577-90136596 None:intergenic 50.0%
! ACAGCGAGTTGTTTGCTGCA+GGG + chr6_3:90137184-90137203 None:intergenic 50.0%
! TACAGCGAGTTGTTTGCTGC+AGG + chr6_3:90137185-90137204 None:intergenic 50.0%
ACAACTCGCTGTATCTCGGT+TGG - chr6_3:90137192-90137211 Msa0964050:intron 50.0%
CAACTCGCTGTATCTCGGTT+GGG - chr6_3:90137193-90137212 Msa0964050:intron 50.0%
AACTCGCTGTATCTCGGTTG+GGG - chr6_3:90137194-90137213 Msa0964050:intron 50.0%
AACTGAATGCACAGGAGACG+AGG + chr6_3:90137248-90137267 None:intergenic 50.0%
ACCGCGGATCGCAAAAATAG+CGG - chr6_3:90137287-90137306 Msa0964050:intron 50.0%
!!! ACCGCTATTTTTGCGATCCG+CGG + chr6_3:90137291-90137310 None:intergenic 50.0%
ATTTGCATTAGCCCGTAGCC+GGG + chr6_3:90137691-90137710 None:intergenic 50.0%
CATTTGCATTAGCCCGTAGC+CGG + chr6_3:90137692-90137711 None:intergenic 50.0%
GTACAATAAAGCCGCATGGG+AGG - chr6_3:90137851-90137870 Msa0964050:intron 50.0%
ATCGATAAGCTCCTCCCATG+CGG + chr6_3:90137865-90137884 None:intergenic 50.0%
CTATAACACGAAGGTCTCGC+CGG + chr6_3:90137986-90138005 None:intergenic 50.0%
CTCATGTCCTCATGGTATGC+CGG - chr6_3:90138205-90138224 Msa0964050:intron 50.0%
!! GCAAAATGGGTGCTGCTGTT+GGG - chr6_3:90138231-90138250 Msa0964050:intron 50.0%
GGAGTCATCTTAGCCCAAAC+AGG + chr6_3:90138314-90138333 None:intergenic 50.0%
! CTACTGACTGCGTGAATGTG+TGG + chr6_3:90138831-90138850 None:intergenic 50.0%
GTCAGCACAACTGTGGTTGT+TGG + chr6_3:90138970-90138989 None:intergenic 50.0%
TCATGCAGTCAGCACAACTG+TGG + chr6_3:90138977-90138996 None:intergenic 50.0%
GAACTTAGAGCAACCCTTGC+TGG + chr6_3:90139171-90139190 None:intergenic 50.0%
! GCAAGGGTTGCTCTAAGTTC+AGG - chr6_3:90139171-90139190 Msa0964050:intron 50.0%
! TGCTCTAAGTTCAGGATGCG+AGG - chr6_3:90139179-90139198 Msa0964050:intron 50.0%
! GCTCTAAGTTCAGGATGCGA+GGG - chr6_3:90139180-90139199 Msa0964050:intron 50.0%
GTTAGGTACTCAACTCCAGG+TGG - chr6_3:90139365-90139384 Msa0964050:intron 50.0%
GCAGTTCATCCGATAGCACT+TGG - chr6_3:90139401-90139420 Msa0964050:intron 50.0%
TCATCCGATAGCACTTGGGA+AGG - chr6_3:90139406-90139425 Msa0964050:intron 50.0%
!! GCTATTGGTGGTGTTGAGAC+TGG - chr6_3:90139488-90139507 Msa0964050:intron 50.0%
!! ATTGGTGGTGTTGAGACTGG+TGG - chr6_3:90139491-90139510 Msa0964050:intron 50.0%
GCCTGGTTACTTGGGAATAG+TGG - chr6_3:90139834-90139853 Msa0964050:intron 50.0%
GTTCAAGACCGAAGAGCAAC+AGG + chr6_3:90140085-90140104 None:intergenic 50.0%
GTTGCTCTTCGGTCTTGAAC+AGG - chr6_3:90140085-90140104 Msa0964050:intron 50.0%
GTCTTGAACAGGATTGTCCC+TGG - chr6_3:90140096-90140115 Msa0964050:intron 50.0%
TGAACAGGATTGTCCCTGGT+AGG - chr6_3:90140100-90140119 Msa0964050:intron 50.0%
TCAGACGTATCCTCCTACCA+GGG + chr6_3:90140116-90140135 None:intergenic 50.0%
! TGCACTGGCGTTATGATGCA+TGG - chr6_3:90140177-90140196 Msa0964050:intron 50.0%
GGCGTTATGATGCATGGCTA+TGG - chr6_3:90140183-90140202 Msa0964050:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr6_3:90140360-90140379 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr6_3:90140359-90140378 None:intergenic 50.0%
!! CACACACTGACTTGGTGCAA+AGG - chr6_3:90140499-90140518 Msa0964050:CDS 50.0%
GTGATTGGATCAGGTCCACC+TGG - chr6_3:90135468-90135487 Msa0964050:intron 55.0%
GCCTTTGATGAAGGTTGGGG+CGG - chr6_3:90135516-90135535 Msa0964050:intron 55.0%
ACCGCCCCAACCTTCATCAA+AGG + chr6_3:90135520-90135539 None:intergenic 55.0%
GACGCACTAATAAGCTCGGG+TGG - chr6_3:90136196-90136215 Msa0964050:intron 55.0%
! TTGACGCAGGGGTATGCATG+TGG + chr6_3:90136351-90136370 None:intergenic 55.0%
ATACCCCTGCGTCAACACCA+AGG - chr6_3:90136356-90136375 Msa0964050:CDS 55.0%
TGCTCTTTAGACGGTTGGGG+CGG + chr6_3:90136382-90136401 None:intergenic 55.0%
GGCTGCTCTTTAGACGGTTG+GGG + chr6_3:90136385-90136404 None:intergenic 55.0%
CGGCTGCTCTTTAGACGGTT+GGG + chr6_3:90136386-90136405 None:intergenic 55.0%
TCGGCTGCTCTTTAGACGGT+TGG + chr6_3:90136387-90136406 None:intergenic 55.0%
TTGTGCGGGAGGCTTCTGAT+GGG + chr6_3:90136425-90136444 None:intergenic 55.0%
GGCGCTGTTCACATGTGTCT+TGG + chr6_3:90136476-90136495 None:intergenic 55.0%
TCTTCCTTCTGCTGTCTCGG+TGG + chr6_3:90136540-90136559 None:intergenic 55.0%
AGGGTCATGCGACATGCAAC+TGG - chr6_3:90136756-90136775 Msa0964050:intron 55.0%
!! GCTGCAGGGCTGGTTGATTA+AGG + chr6_3:90137170-90137189 None:intergenic 55.0%
TATAGCACACTGCCGCACAG+AGG + chr6_3:90137325-90137344 None:intergenic 55.0%
! CGGCTACGGGCTAATGCAAA+TGG - chr6_3:90137690-90137709 Msa0964050:intron 55.0%
CGCCGGATCGATGTCTAGTT+CGG + chr6_3:90137969-90137988 None:intergenic 55.0%
AGGTTCAGCCCGTTGATGTC+TGG - chr6_3:90138088-90138107 Msa0964050:CDS 55.0%
CAGCCCGTTGATGTCTGGTT+CGG - chr6_3:90138093-90138112 Msa0964050:CDS 55.0%
TGGTATGCCGGAGCGCAAAA+TGG - chr6_3:90138217-90138236 Msa0964050:intron 55.0%
GGTATGCCGGAGCGCAAAAT+GGG - chr6_3:90138218-90138237 Msa0964050:intron 55.0%
!! CGCAAAATGGGTGCTGCTGT+TGG - chr6_3:90138230-90138249 Msa0964050:intron 55.0%
ATTGCCAACCCCTCAACGCA+AGG + chr6_3:90139270-90139289 None:intergenic 55.0%
GGAGAAAAGGGGTGGACCAA+AGG + chr6_3:90139751-90139770 None:intergenic 55.0%
GGATCCCCTGATTCTTTGCC+TGG - chr6_3:90139817-90139836 Msa0964050:intron 55.0%
ACAGGATTGTCCCTGGTAGG+AGG - chr6_3:90140103-90140122 Msa0964050:intron 55.0%
CTCAGACGTATCCTCCTACC+AGG + chr6_3:90140117-90140136 None:intergenic 55.0%
TGCGTCTTGCACGGGCTTGT+TGG + chr6_3:90136182-90136201 None:intergenic 60.0%
!! GGAGGCTTCTGATGGGCTCT+TGG + chr6_3:90136418-90136437 None:intergenic 60.0%
GTTGTGCGGGAGGCTTCTGA+TGG + chr6_3:90136426-90136445 None:intergenic 60.0%
CAAAGGGTTTGGCTGCTGGC+AGG + chr6_3:90136497-90136516 None:intergenic 60.0%
CTGTCTCGGTGGTGACAGGT+CGG + chr6_3:90136529-90136548 None:intergenic 60.0%
TCTGCTGTCTCGGTGGTGAC+AGG + chr6_3:90136533-90136552 None:intergenic 60.0%
GTCACCACCGAGACAGCAGA+AGG - chr6_3:90136533-90136552 Msa0964050:intron 60.0%
! CGAGTTGTTTGCTGCAGGGC+TGG + chr6_3:90137180-90137199 None:intergenic 60.0%
CTCCTCGTTATGCCCGGCTA+CGG - chr6_3:90137676-90137695 Msa0964050:intron 60.0%
TCCTCGTTATGCCCGGCTAC+GGG - chr6_3:90137677-90137696 Msa0964050:intron 60.0%
TTGCGCTCCGGCATACCATG+AGG + chr6_3:90138215-90138234 None:intergenic 60.0%
! GCAGCACCCATTTTGCGCTC+CGG + chr6_3:90138227-90138246 None:intergenic 60.0%
ACGTCCTGAGCCTTGCGTTG+AGG - chr6_3:90139257-90139276 Msa0964050:intron 60.0%
CGTCCTGAGCCTTGCGTTGA+GGG - chr6_3:90139258-90139277 Msa0964050:intron 60.0%
GTCCTGAGCCTTGCGTTGAG+GGG - chr6_3:90139259-90139278 Msa0964050:intron 60.0%
AACCCCTCAACGCAAGGCTC+AGG + chr6_3:90139264-90139283 None:intergenic 60.0%
TGAGCCTTGCGTTGAGGGGT+TGG - chr6_3:90139263-90139282 Msa0964050:intron 60.0%
!! CGGCCTTGGTGTTGACGCAG+GGG + chr6_3:90136362-90136381 None:intergenic 65.0%
!! GCGGCCTTGGTGTTGACGCA+GGG + chr6_3:90136363-90136382 None:intergenic 65.0%
TTAGACGGTTGGGGCGGCCT+TGG + chr6_3:90136376-90136395 None:intergenic 65.0%
!! GGCGGCCTTGGTGTTGACGC+AGG + chr6_3:90136364-90136383 None:intergenic 70.0%
GCCCGTAGCCGGGCATAACG+AGG + chr6_3:90137681-90137700 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 90134978 90140885 90134978 ID=Msa0964050;Name=Msa0964050
chr6_3 mRNA 90134978 90140885 90134978 ID=Msa0964050-mRNA-1;Parent=Msa0964050;Name=Msa0964050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=304|1|1|1|1|1|7|253|424
chr6_3 exon 90134978 90135387 90134978 ID=Msa0964050-mRNA-1:exon:16227;Parent=Msa0964050-mRNA-1
chr6_3 exon 90135580 90135689 90135580 ID=Msa0964050-mRNA-1:exon:16226;Parent=Msa0964050-mRNA-1
chr6_3 exon 90136307 90136493 90136307 ID=Msa0964050-mRNA-1:exon:16225;Parent=Msa0964050-mRNA-1
chr6_3 exon 90136583 90136695 90136583 ID=Msa0964050-mRNA-1:exon:16224;Parent=Msa0964050-mRNA-1
chr6_3 exon 90137508 90137678 90137508 ID=Msa0964050-mRNA-1:exon:16223;Parent=Msa0964050-mRNA-1
chr6_3 exon 90137958 90138221 90137958 ID=Msa0964050-mRNA-1:exon:16222;Parent=Msa0964050-mRNA-1
chr6_3 exon 90140309 90140885 90140309 ID=Msa0964050-mRNA-1:exon:16221;Parent=Msa0964050-mRNA-1
chr6_3 five_prime_UTR 90140582 90140885 90140582 ID=Msa0964050-mRNA-1:five_prime_utr;Parent=Msa0964050-mRNA-1
chr6_3 CDS 90140309 90140581 90140309 ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1
chr6_3 CDS 90137958 90138221 90137958 ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1
chr6_3 CDS 90137508 90137678 90137508 ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1
chr6_3 CDS 90136583 90136695 90136583 ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1
chr6_3 CDS 90136307 90136493 90136307 ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1
chr6_3 CDS 90135580 90135689 90135580 ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1
chr6_3 CDS 90135231 90135387 90135231 ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1
chr6_3 three_prime_UTR 90134978 90135230 90134978 ID=Msa0964050-mRNA-1:three_prime_utr;Parent=Msa0964050-mRNA-1
Gene Sequence

>Msa0964050

ATGGCGAATTTAAGCATGACCCAGATGAGAACTAGCAATTCTGCACCTGGGTTTTCATTGGATTGGTCTAGGAAGGTTCATGCACGTCCTAGTAGAGTTGGGTTCAAAATTTTTGCTTCTGAGAGTCAAGCTTCAGAACCTGATCTGAGTGTTACTGTTAATGGTTTACATATGCCAAATCCATTTGTGATTGGATCAGGTCCACCTGGGACTAATTATACTGTTATGAAAAGAGCCTTTGATGAAGGTTGGGGCGGTGTCATTGCTAAAACTGTATCACTTGATGCAGCAAAAGTTATAAATGTAACTCCTCGTTATGCCCGGCTACGGGCTAATGCAAATGGATCTGCAAAAGGAGAAATTATTGGGTGGCAGAATATTGAACTTATCAGTGATAGACCGCTTGAAACCATGTTGAAAGAGTTTAAGCAATTAAAAGAGGAGTACCCTGATAGAATTCTCATCGCTTCAATCATGGAAGAGTACAATAAAGCCGCATGGGAGGAGCTTATCGATAGAGTCGAACAAACTGGAGTTGATGCGATTGAAATAAACTTCTCATGTCCTCATGGTATGCCGGAGCGCAAAATGGGTGCTGCTGTTGGGCAAGATTGTGCTCTTCTTGAAGAAGTTTGTGGATGGATAAATGCAAAGGCTACAGTTCCTGTTTGGGCTAAGATGACTCCCAACATAACTGATATTTCAGAGCCAGCAAGGGTTGCTCTAAGTTCAGGATGCGAGGGAGTAGCTGCTATAAATACAATCATGAGCGTCATGGGAATCAATCTCAATACATTACGTCCTGAGCCTTGCGTTGAGGGGTACTCAACTCCAGGTGGTTATTCTGCAAAAGCAGTTCATCCGATAGCACTTGGGAAGGTTATGAGTATTGCGAAAATGATGAAATCAGAGTTTGATAGTGAGAACTATTCACTTTCTGCTATTGGTGGTGTTGAGACTGGTGGTGATGCAGCTGAGTTTATTCTTCTTGGTGCAAATACTGTCCAGGTGTGCACTGGCGTTATGATGCATGGCTATGGTCTTGTGAAGAAGCTTTCTCTTGAGCTAAAAGACTTCATGAAAAAGCACAATTTCACATCAATAGAAGATTTCAGAGGGGCATCTCTTCAGTATTTTACTACACACACTGACTTGGTGCAAAGGCAGCAAGAAGCAATTAAGCAAAGGAAAGCCATAAAGAAAGGCTTGCAATCTGATAAAGACTGGACAGGAGATGGTTTTGTGAAAGAAAGTGAAAGCATGGTTTCTAATTAA

Protein sequence

>Msa0964050

MANLSMTQMRTSNSAPGFSLDWSRKVHARPSRVGFKIFASESQASEPDLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAAKVINVTPRYARLRANANGSAKGEIIGWQNIELISDRPLETMLKEFKQLKEEYPDRILIASIMEEYNKAAWEELIDRVEQTGVDAIEINFSCPHGMPERKMGAAVGQDCALLEEVCGWINAKATVPVWAKMTPNITDISEPARVALSSGCEGVAAINTIMSVMGINLNTLRPEPCVEGYSTPGGYSAKAVHPIALGKVMSIAKMMKSEFDSENYSLSAIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKKLSLELKDFMKKHNFTSIEDFRGASLQYFTTHTDLVQRQQEAIKQRKAIKKGLQSDKDWTGDGFVKESESMVSN*