Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0964050 | XP_003619878.1 | 95.519 | 424 | 19 | 0 | 1 | 424 | 1 | 424 | 0.0 | 847 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0964050 | sp|Q9LVI9|DPYD_ARATH | 80.653 | 429 | 75 | 4 | 1 | 424 | 1 | 426 | 0.0 | 713 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0026630 | Msa0964050 | 0.803496 | 3.390546e-49 | -8.615850e-47 |
Msa0641130 | Msa0964050 | 0.828805 | 7.327717e-55 | -8.615850e-47 |
Msa0271550 | Msa0964050 | 0.825040 | 5.821697e-54 | -8.615850e-47 |
Msa0545050 | Msa0964050 | 0.818174 | 2.249750e-52 | -8.615850e-47 |
Msa0600590 | Msa0964050 | 0.825574 | 4.353233e-54 | -8.615850e-47 |
Msa0960810 | Msa0964050 | 0.997530 | 3.331011e-244 | -8.615850e-47 |
Msa0964050 | Msa1030810 | 0.815655 | 8.271149e-52 | -8.615850e-47 |
Msa0964050 | Msa1069890 | 0.823134 | 1.631041e-53 | -8.615850e-47 |
Msa0964050 | Msa1168640 | 0.803147 | 4.003851e-49 | -8.615850e-47 |
Msa0964050 | Msa1259860 | 0.802643 | 5.090288e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0964050 | MtrunA17_Chr6g0479191 | 95.519 | 424 | 19 | 0 | 1 | 424 | 1 | 424 | 0.0 | 847 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0964050 | AT3G17810.1 | 80.653 | 429 | 75 | 4 | 1 | 424 | 1 | 426 | 0.0 | 713 |
Find 111 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATCTGAGTGTTACTGTTAA+TGG | 0.180819 | 6_3:-90140418 | Msa0964050:CDS |
GCAGCTGAGTTTATTCTTCT+TGG | 0.200783 | 6_3:-90136323 | Msa0964050:CDS |
AGATTGCAAGCCTTTCTTTA+TGG | 0.204573 | 6_3:+90135291 | None:intergenic |
TATTTATAAGATTATGATTA+AGG | 0.216600 | 6_3:+90140832 | None:intergenic |
GGTAATATTATAATATTATA+TGG | 0.224296 | 6_3:+90140684 | None:intergenic |
AACTATTCACTTTCTGCTAT+TGG | 0.259287 | 6_3:-90136368 | Msa0964050:CDS |
TGGTATGCCGGAGCGCAAAA+TGG | 0.263705 | 6_3:-90137624 | Msa0964050:CDS |
CAGAATTGCTAGTTCTCATC+TGG | 0.278551 | 6_3:+90140539 | None:intergenic |
TAAGCATTTGGAGGATTATC+TGG | 0.282254 | 6_3:+90140761 | None:intergenic |
CTGGAAATATTGTAAAGAAT+TGG | 0.307064 | 6_3:+90140780 | None:intergenic |
TCTGCAAAAGGAGAAATTAT+TGG | 0.311163 | 6_3:-90138127 | Msa0964050:CDS |
CAAAGGCTACAGTTCCTGTT+TGG | 0.312936 | 6_3:-90137544 | Msa0964050:CDS |
CGTTTGGATGAGTAAGCATT+TGG | 0.341817 | 6_3:+90140749 | None:intergenic |
ACCATCATCATCAACTTTCA+TGG | 0.353220 | 6_3:-90135012 | Msa0964050:three_prime_UTR |
GAACTTAGAGCAACCCTTGC+TGG | 0.357378 | 6_3:+90136673 | None:intergenic |
CGTCCTGAGCCTTGCGTTGA+GGG | 0.358604 | 6_3:-90136583 | Msa0964050:CDS |
GATCCAATCACAAATGGATT+TGG | 0.372017 | 6_3:+90140385 | None:intergenic |
GCTCTTCTTGAAGAAGTTTG+TGG | 0.375842 | 6_3:-90137578 | Msa0964050:CDS |
CGCAAAATGGGTGCTGCTGT+TGG | 0.388137 | 6_3:-90137611 | Msa0964050:CDS |
AAGAGCCTTTGATGAAGGTT+GGG | 0.391243 | 6_3:-90140329 | Msa0964050:CDS |
GCTATTGGTGGTGTTGAGAC+TGG | 0.396156 | 6_3:-90136353 | Msa0964050:CDS |
GAAGCGATGAGAATTCTATC+AGG | 0.397731 | 6_3:+90138025 | None:intergenic |
CTGCAAAAGGAGAAATTATT+GGG | 0.403065 | 6_3:-90138126 | Msa0964050:CDS |
ATGCCAAATCCATTTGTGAT+TGG | 0.408143 | 6_3:-90140388 | Msa0964050:CDS |
TGCAATTATGAATCACCGTT+TGG | 0.411539 | 6_3:+90140733 | None:intergenic |
AAAGGCTACAGTTCCTGTTT+GGG | 0.415981 | 6_3:-90137543 | Msa0964050:CDS |
AGAGTTTAAGCAATTAAAAG+AGG | 0.416736 | 6_3:-90138053 | Msa0964050:CDS |
CAATTCACAATATTCTTAGA+AGG | 0.427150 | 6_3:+90135098 | None:intergenic |
CGGCTACGGGCTAATGCAAA+TGG | 0.429884 | 6_3:-90138151 | Msa0964050:CDS |
AATCCATTTGTGATTGGATC+AGG | 0.430806 | 6_3:-90140382 | Msa0964050:CDS |
CTCTGAAATATCAGTTATGT+TGG | 0.442627 | 6_3:+90137508 | None:intergenic |
GCAAGGGTTGCTCTAAGTTC+AGG | 0.458325 | 6_3:-90136670 | Msa0964050:CDS |
GGAGTCATCTTAGCCCAAAC+AGG | 0.459815 | 6_3:+90137530 | None:intergenic |
TTCATTGGATTGGTCTAGGA+AGG | 0.462264 | 6_3:-90140506 | Msa0964050:CDS |
ATCGATAGAGTCGAACAAAC+TGG | 0.464817 | 6_3:-90137962 | Msa0964050:CDS |
AACCCCTCAACGCAAGGCTC+AGG | 0.469526 | 6_3:+90136580 | None:intergenic |
TATTCACTTTCTGCTATTGG+TGG | 0.475181 | 6_3:-90136365 | Msa0964050:CDS |
CATGCACGTCCTAGTAGAGT+TGG | 0.475768 | 6_3:-90140481 | Msa0964050:CDS |
GGTATGCCGGAGCGCAAAAT+GGG | 0.481117 | 6_3:-90137623 | Msa0964050:CDS |
TGTGAAAGAAAGTGAAAGCA+TGG | 0.486791 | 6_3:-90135242 | Msa0964050:CDS |
TCTTGGTGCAAATACTGTCC+AGG | 0.487074 | 6_3:-90136306 | Msa0964050:intron |
GCAAAATGGGTGCTGCTGTT+GGG | 0.487510 | 6_3:-90137610 | Msa0964050:CDS |
TTTAAATTGCAGGTGTGCAC+TGG | 0.491165 | 6_3:-90135679 | Msa0964050:intron |
AATTCTCATCGCTTCAATCA+TGG | 0.491371 | 6_3:-90138017 | Msa0964050:CDS |
GGACCTGATCCAATCACAAA+TGG | 0.496107 | 6_3:+90140379 | None:intergenic |
AAAGAGCCTTTGATGAAGGT+TGG | 0.497584 | 6_3:-90140330 | Msa0964050:CDS |
CATTTGCATTAGCCCGTAGC+CGG | 0.499385 | 6_3:+90138152 | None:intergenic |
CAAAGGAAAGCCATAAAGAA+AGG | 0.501819 | 6_3:-90135301 | Msa0964050:CDS |
TTGGATGAGTAAGCATTTGG+AGG | 0.501821 | 6_3:+90140752 | None:intergenic |
ATGCACGTCCTAGTAGAGTT+GGG | 0.505524 | 6_3:-90140480 | Msa0964050:CDS |
TCTGAAATATCAGTTATGTT+GGG | 0.506589 | 6_3:+90137509 | None:intergenic |
GTGATTGGATCAGGTCCACC+TGG | 0.507691 | 6_3:-90140373 | Msa0964050:CDS |
TTTGTTAGGTACTCAACTCC+AGG | 0.511040 | 6_3:-90136479 | Msa0964050:intron |
GCAGTTCATCCGATAGCACT+TGG | 0.512671 | 6_3:-90136440 | Msa0964050:CDS |
GGCGTTATGATGCATGGCTA+TGG | 0.516244 | 6_3:-90135658 | Msa0964050:CDS |
CTTTCTGCAAGATTCAGAAA+AGG | 0.520638 | 6_3:+90140602 | None:intergenic |
CTCATGTCCTCATGGTATGC+CGG | 0.520822 | 6_3:-90137636 | Msa0964050:CDS |
AATACAATCATGAGCGTCAT+GGG | 0.525192 | 6_3:-90136625 | Msa0964050:CDS |
AAATACAATCATGAGCGTCA+TGG | 0.529657 | 6_3:-90136626 | Msa0964050:CDS |
GCTTGCAATCTGATAAAGAC+TGG | 0.530476 | 6_3:-90135279 | Msa0964050:CDS |
ACGTCCTGAGCCTTGCGTTG+AGG | 0.531564 | 6_3:-90136584 | Msa0964050:CDS |
AGAACTAGCAATTCTGCACC+TGG | 0.533573 | 6_3:-90140532 | Msa0964050:CDS |
ATAACCTTCCCAAGTGCTAT+CGG | 0.533776 | 6_3:+90136431 | None:intergenic |
ATGTAACTCCTCGTTATGCC+CGG | 0.535192 | 6_3:-90138171 | Msa0964050:CDS |
GATAAAGACTGGACAGGAGA+TGG | 0.535548 | 6_3:-90135268 | Msa0964050:CDS |
AATGCAAATGGATCTGCAAA+AGG | 0.536497 | 6_3:-90138139 | Msa0964050:CDS |
CAATCTGATAAAGACTGGAC+AGG | 0.536629 | 6_3:-90135274 | Msa0964050:CDS |
TTCTTGAAGAAGTTTGTGGA+TGG | 0.536809 | 6_3:-90137574 | Msa0964050:CDS |
ATGAAAAGAGCCTTTGATGA+AGG | 0.541144 | 6_3:-90140334 | Msa0964050:CDS |
AGAGCCTTTGATGAAGGTTG+GGG | 0.541495 | 6_3:-90140328 | Msa0964050:CDS |
GTTTCTGTTTGTAGCCAGCA+AGG | 0.542946 | 6_3:-90136687 | Msa0964050:intron |
TGCTCTAAGTTCAGGATGCG+AGG | 0.553949 | 6_3:-90136662 | Msa0964050:CDS |
ATAAACTTCTCATGTCCTCA+TGG | 0.555561 | 6_3:-90137644 | Msa0964050:CDS |
TCTTGCAAATGAAGTGGTGA+AGG | 0.566366 | 6_3:-90135160 | Msa0964050:three_prime_UTR |
TGCACTGGCGTTATGATGCA+TGG | 0.570814 | 6_3:-90135664 | Msa0964050:CDS |
CACACACTGACTTGGTGCAA+AGG | 0.573029 | 6_3:-90135342 | Msa0964050:CDS |
TTTCTGTTTGTAGCCAGCAA+GGG | 0.576556 | 6_3:-90136686 | Msa0964050:intron |
TTAACAGTAACACTCAGATC+AGG | 0.578177 | 6_3:+90140421 | None:intergenic |
ATAACAGTATAATTAGTCCC+AGG | 0.587291 | 6_3:+90140355 | None:intergenic |
GTCCTGAGCCTTGCGTTGAG+GGG | 0.588189 | 6_3:-90136582 | Msa0964050:intron |
TATAGCTCTTGCAAATGAAG+TGG | 0.590555 | 6_3:-90135166 | Msa0964050:three_prime_UTR |
ACCGCCCCAACCTTCATCAA+AGG | 0.598376 | 6_3:+90140324 | None:intergenic |
ATTGCCAACCCCTCAACGCA+AGG | 0.601265 | 6_3:+90136574 | None:intergenic |
TGATTGGATCAGGTCCACCT+GGG | 0.601497 | 6_3:-90140372 | Msa0964050:CDS |
AGGTGATTCTGAATCTGAGT+TGG | 0.601983 | 6_3:+90140663 | None:intergenic |
CATCAATAGAAGATTTCAGA+GGG | 0.602379 | 6_3:-90135579 | Msa0964050:intron |
GCCTTTGATGAAGGTTGGGG+CGG | 0.602777 | 6_3:-90140325 | Msa0964050:CDS |
AGAGTACAATAAAGCCGCAT+GGG | 0.602901 | 6_3:-90137993 | Msa0964050:CDS |
CAACATAACTGATATTTCAG+AGG | 0.605943 | 6_3:-90137507 | Msa0964050:intron |
AGAATTGCTAGTTCTCATCT+GGG | 0.607718 | 6_3:+90140540 | None:intergenic |
AGCAAGAAGCAATTAAGCAA+AGG | 0.608908 | 6_3:-90135318 | Msa0964050:CDS |
TCTTTCAACATGGTTTCAAG+CGG | 0.612116 | 6_3:+90138073 | None:intergenic |
AAGAGTACAATAAAGCCGCA+TGG | 0.612930 | 6_3:-90137994 | Msa0964050:CDS |
CAAATGCTTACTCATCCAAA+CGG | 0.613014 | 6_3:-90140748 | Msa0964050:five_prime_UTR |
TTGTGGATGGATAAATGCAA+AGG | 0.617242 | 6_3:-90137561 | Msa0964050:CDS |
ACATCAATAGAAGATTTCAG+AGG | 0.619025 | 6_3:-90135580 | Msa0964050:CDS |
CAGTTCATCCGATAGCACTT+GGG | 0.631187 | 6_3:-90136439 | Msa0964050:CDS |
GTACAATAAAGCCGCATGGG+AGG | 0.631532 | 6_3:-90137990 | Msa0964050:CDS |
TCATCCGATAGCACTTGGGA+AGG | 0.632133 | 6_3:-90136435 | Msa0964050:CDS |
GCCCGTAGCCGGGCATAACG+AGG | 0.632333 | 6_3:+90138163 | None:intergenic |
ATCGATAAGCTCCTCCCATG+CGG | 0.636350 | 6_3:+90137979 | None:intergenic |
AAGCGATGAGAATTCTATCA+GGG | 0.636759 | 6_3:+90138026 | None:intergenic |
TTGCTTAAACTCTTTCAACA+TGG | 0.637483 | 6_3:+90138063 | None:intergenic |
GCTCTAAGTTCAGGATGCGA+GGG | 0.640142 | 6_3:-90136661 | Msa0964050:CDS |
GAACTAGCAATTCTGCACCT+GGG | 0.647996 | 6_3:-90140531 | Msa0964050:CDS |
GCCATGAAAGTTGATGATGA+TGG | 0.648057 | 6_3:+90135011 | None:intergenic |
CAAAAGGAGAAATTATTGGG+TGG | 0.669484 | 6_3:-90138123 | Msa0964050:CDS |
ATTGGTGGTGTTGAGACTGG+TGG | 0.671887 | 6_3:-90136350 | Msa0964050:CDS |
GACCAATCCAATGAAAACCC+AGG | 0.680757 | 6_3:+90140514 | None:intergenic |
ACAGTATAATTAGTCCCAGG+TGG | 0.689168 | 6_3:+90140358 | None:intergenic |
GTTAGGTACTCAACTCCAGG+TGG | 0.710353 | 6_3:-90136476 | Msa0964050:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATGATTTTTAATTTTTAGT+TGG | + | chr6_3:90134988-90135007 | None:intergenic | 10.0% |
!! | TATTTATAAGATTATGATTA+AGG | + | chr6_3:90135012-90135031 | None:intergenic | 10.0% |
!! | GGTAATATTATAATATTATA+TGG | + | chr6_3:90135160-90135179 | None:intergenic | 10.0% |
!! | ATATTTCATATTTCATTATA+AGG | + | chr6_3:90137490-90137509 | None:intergenic | 10.0% |
!!! | AAATTTTGAATAAAAATTAC+AGG | - | chr6_3:90140454-90140473 | Msa0964050:CDS | 10.0% |
!!! | AATTTTGAATAAAAATTACA+GGG | - | chr6_3:90140455-90140474 | Msa0964050:CDS | 10.0% |
!!! | TCAATTTTTTCCTTAAAAAA+TGG | - | chr6_3:90135263-90135282 | Msa0964050:CDS | 15.0% |
!!! | TTATTGGTTAAAATTCATAT+GGG | + | chr6_3:90137076-90137095 | None:intergenic | 15.0% |
!!! | TTTATTGGTTAAAATTCATA+TGG | + | chr6_3:90137077-90137096 | None:intergenic | 15.0% |
!!! | ATTTGATTATTTGTTTTGTT+AGG | - | chr6_3:90137620-90137639 | Msa0964050:CDS | 15.0% |
!!! | AAAAGAATATCAAAATTTTC+AGG | + | chr6_3:90138163-90138182 | None:intergenic | 15.0% |
!!! | GAAAATTTTGATATTCTTTT+AGG | - | chr6_3:90138163-90138182 | Msa0964050:CDS | 15.0% |
!!! | TGAAAAACAAATATCATTTT+TGG | + | chr6_3:90138556-90138575 | None:intergenic | 15.0% |
!!! | TTTGTTTTTCACAAAATTAA+AGG | - | chr6_3:90138565-90138584 | Msa0964050:intron | 15.0% |
!! | AAAATAAATAAATCAGAATC+TGG | - | chr6_3:90138916-90138935 | Msa0964050:intron | 15.0% |
!!! | AATTTGTCAAAAATTTTGTT+AGG | - | chr6_3:90139348-90139367 | Msa0964050:intron | 15.0% |
!!! | TCAAAACTTTTATAAATACA+TGG | - | chr6_3:90140292-90140311 | Msa0964050:intron | 15.0% |
!!! | ATATGATTTTCTTTATTGTT+TGG | + | chr6_3:90140334-90140353 | None:intergenic | 15.0% |
!!! | ATTGTGAATTGTTTTATATT+AGG | - | chr6_3:90140755-90140774 | Msa0964050:five_prime_UTR | 15.0% |
!! | AAATAATGATTTCACGAATT+CGG | - | chr6_3:90135659-90135678 | Msa0964050:CDS | 20.0% |
!!! | TTGTTCCATTTTTGTTTTTT+GGG | + | chr6_3:90136294-90136313 | None:intergenic | 20.0% |
!!! | TTTGTTCCATTTTTGTTTTT+TGG | + | chr6_3:90136295-90136314 | None:intergenic | 20.0% |
!!! | TTTCCAATACACTTTTTTAT+CGG | - | chr6_3:90136989-90137008 | Msa0964050:intron | 20.0% |
!!! | GTTCTTTTAACCATATTTTA+AGG | - | chr6_3:90138371-90138390 | Msa0964050:intron | 20.0% |
!! | TTCTTAAACACCTTAAAATA+TGG | + | chr6_3:90138384-90138403 | None:intergenic | 20.0% |
! | CTGGAAATATTGTAAAGAAT+TGG | + | chr6_3:90135064-90135083 | None:intergenic | 25.0% |
!!! | TATGGATTTTGATTAGTGAT+TGG | + | chr6_3:90135142-90135161 | None:intergenic | 25.0% |
! | AGAAACAGAAAAAGAATAAG+AGG | + | chr6_3:90135201-90135220 | None:intergenic | 25.0% |
!!! | CTTAAATTCGCCATTTTTTA+AGG | + | chr6_3:90135276-90135295 | None:intergenic | 25.0% |
! | CTTGATTAATGTAATTGTCA+TGG | - | chr6_3:90135632-90135651 | Msa0964050:CDS | 25.0% |
!! | TCATTGTTTCTTCATAATGT+TGG | - | chr6_3:90135795-90135814 | Msa0964050:intron | 25.0% |
!! | CATTGTTTCTTCATAATGTT+GGG | - | chr6_3:90135796-90135815 | Msa0964050:intron | 25.0% |
!! | ATTGTTTCTTCATAATGTTG+GGG | - | chr6_3:90135797-90135816 | Msa0964050:intron | 25.0% |
! | TTATTAGTAATACATGTGCA+TGG | - | chr6_3:90135898-90135917 | Msa0964050:intron | 25.0% |
! | AATATATCACATAGAGCTTA+TGG | + | chr6_3:90136052-90136071 | None:intergenic | 25.0% |
!!! | TCATAAAAGTGTTGATGTTT+TGG | + | chr6_3:90136588-90136607 | None:intergenic | 25.0% |
!!! | TCAATACAAAAGTGCTTAAA+TGG | - | chr6_3:90136646-90136665 | Msa0964050:CDS | 25.0% |
!! | TGCTTTTCTGACTATTAAAA+TGG | - | chr6_3:90136839-90136858 | Msa0964050:intron | 25.0% |
! | CACATTGTTTAGAGAAAAAA+GGG | + | chr6_3:90136879-90136898 | None:intergenic | 25.0% |
! | TCACATTGTTTAGAGAAAAA+AGG | + | chr6_3:90136880-90136899 | None:intergenic | 25.0% |
!! | TAACCGATAAAAAAGTGTAT+TGG | + | chr6_3:90136995-90137014 | None:intergenic | 25.0% |
!! | TTATCGGTTAAATTTCACAT+CGG | - | chr6_3:90137005-90137024 | Msa0964050:intron | 25.0% |
! | ATGTGAATCCCATATAAATT+TGG | - | chr6_3:90137040-90137059 | Msa0964050:intron | 25.0% |
! | ATTAAGGAAAAAACTGTCTT+TGG | + | chr6_3:90137154-90137173 | None:intergenic | 25.0% |
! | TTGTCAAATTACAGATATAG+TGG | + | chr6_3:90137351-90137370 | None:intergenic | 25.0% |
! | TCATATTTCATTATAAGGTC+AGG | + | chr6_3:90137485-90137504 | None:intergenic | 25.0% |
! | AGAGTTTAAGCAATTAAAAG+AGG | - | chr6_3:90137788-90137807 | Msa0964050:intron | 25.0% |
!!! | TAGTTCGGTTTTTAAAACAT+AGG | + | chr6_3:90137954-90137973 | None:intergenic | 25.0% |
! | TATAGTTCAACCTCTTTAAA+TGG | - | chr6_3:90138001-90138020 | Msa0964050:CDS | 25.0% |
!! | TCTGAAATATCAGTTATGTT+GGG | + | chr6_3:90138335-90138354 | None:intergenic | 25.0% |
!!! | ATTTTAAGGTGTTTAAGAAG+TGG | - | chr6_3:90138385-90138404 | Msa0964050:intron | 25.0% |
! | TTGTCGAATTATCAAATTTC+TGG | - | chr6_3:90138412-90138431 | Msa0964050:intron | 25.0% |
!! | TGTTTAAAGTTTAAATGCAC+AGG | + | chr6_3:90138591-90138610 | None:intergenic | 25.0% |
! | AACAGTTTCTCAAAATAAGT+TGG | - | chr6_3:90138682-90138701 | Msa0964050:intron | 25.0% |
!!! | TTGTGTAGAAAGTCATTTTT+AGG | + | chr6_3:90138768-90138787 | None:intergenic | 25.0% |
! | GTTAAAAGACAAATCAAGAT+CGG | - | chr6_3:90138802-90138821 | Msa0964050:intron | 25.0% |
! | AAAATATCGAGCTTGAAATA+TGG | + | chr6_3:90138888-90138907 | None:intergenic | 25.0% |
! | TCAATATCAAGGATCAAATA+GGG | + | chr6_3:90139793-90139812 | None:intergenic | 25.0% |
! | TTCAATATCAAGGATCAAAT+AGG | + | chr6_3:90139794-90139813 | None:intergenic | 25.0% |
!! | TTTTCTTTATTGTTTGGATG+AGG | + | chr6_3:90140328-90140347 | None:intergenic | 25.0% |
! | CAATTCACAATATTCTTAGA+AGG | + | chr6_3:90140746-90140765 | None:intergenic | 25.0% |
! | GCTTAAAAATCACATATTTG+AGG | + | chr6_3:90140858-90140877 | None:intergenic | 25.0% |
!!! | CAAATATGTGATTTTTAAGC+TGG | - | chr6_3:90140858-90140877 | Msa0964050:five_prime_UTR | 25.0% |
AAAAGGAAGAAGAAAAACAG+AGG | + | chr6_3:90135225-90135244 | None:intergenic | 30.0% | |
ATAACAGTATAATTAGTCCC+AGG | + | chr6_3:90135489-90135508 | None:intergenic | 30.0% | |
!! | AAGTTGAGTGTTTGATTTGT+TGG | - | chr6_3:90135856-90135875 | Msa0964050:intron | 30.0% |
ACTTATGATACAATGCTTAC+AGG | - | chr6_3:90135985-90136004 | Msa0964050:intron | 30.0% | |
AATAAGCTGAAAACAGCTTA+TGG | + | chr6_3:90136028-90136047 | None:intergenic | 30.0% | |
TGGGAAAAAAAATACACACA+AGG | - | chr6_3:90136216-90136235 | Msa0964050:intron | 30.0% | |
GGGAAAAAAAATACACACAA+GGG | - | chr6_3:90136217-90136236 | Msa0964050:intron | 30.0% | |
GGAAAAAAAATACACACAAG+GGG | - | chr6_3:90136218-90136237 | Msa0964050:intron | 30.0% | |
!!! | TTTTTTGGGTGGTTTTTAAG+GGG | + | chr6_3:90136280-90136299 | None:intergenic | 30.0% |
!!! | GTTTTTTGGGTGGTTTTTAA+GGG | + | chr6_3:90136281-90136300 | None:intergenic | 30.0% |
!!! | TGTTTTTTGGGTGGTTTTTA+AGG | + | chr6_3:90136282-90136301 | None:intergenic | 30.0% |
AACCACCCAAAAAACAAAAA+TGG | - | chr6_3:90136286-90136305 | Msa0964050:intron | 30.0% | |
!!! | TTCCATTTTTGTTTTTTGGG+TGG | + | chr6_3:90136291-90136310 | None:intergenic | 30.0% |
!!! | TAAAAGTGTTGATGTTTTGG+TGG | + | chr6_3:90136585-90136604 | None:intergenic | 30.0% |
!! | TACAAAAGTGCTTAAATGGT+TGG | - | chr6_3:90136650-90136669 | Msa0964050:CDS | 30.0% |
CAAAACAAAACCACAAAAGA+TGG | + | chr6_3:90136681-90136700 | None:intergenic | 30.0% | |
TTTGCATGACTTATGTTGAA+AGG | - | chr6_3:90136697-90136716 | Msa0964050:intron | 30.0% | |
TTGCATGACTTATGTTGAAA+GGG | - | chr6_3:90136698-90136717 | Msa0964050:intron | 30.0% | |
!!! | ACATTTTGTTTGTACCGATT+AGG | - | chr6_3:90136731-90136750 | Msa0964050:intron | 30.0% |
! | TACTCATGTATTGTTTCTTG+AGG | - | chr6_3:90136787-90136806 | Msa0964050:intron | 30.0% |
TGAATCCCATATAAATTTGG+CGG | - | chr6_3:90137043-90137062 | Msa0964050:intron | 30.0% | |
! | TAACCAATAAAAGAGTGTGT+TGG | - | chr6_3:90137086-90137105 | Msa0964050:intron | 30.0% |
! | TTTCCAACACACTCTTTTAT+TGG | + | chr6_3:90137092-90137111 | None:intergenic | 30.0% |
AGCAAACAGAACAGTTATAA+CGG | + | chr6_3:90137525-90137544 | None:intergenic | 30.0% | |
! | ATAACTGTTCTGTTTGCTTT+TGG | - | chr6_3:90137527-90137546 | Msa0964050:CDS | 30.0% |
TCTGCAAAAGGAGAAATTAT+TGG | - | chr6_3:90137714-90137733 | Msa0964050:intron | 30.0% | |
CTGCAAAAGGAGAAATTATT+GGG | - | chr6_3:90137715-90137734 | Msa0964050:intron | 30.0% | |
TTGCTTAAACTCTTTCAACA+TGG | + | chr6_3:90137781-90137800 | None:intergenic | 30.0% | |
TAACTGTACGTAGTAAAAAC+TGG | - | chr6_3:90138061-90138080 | Msa0964050:CDS | 30.0% | |
!! | CTCTGAAATATCAGTTATGT+TGG | + | chr6_3:90138336-90138355 | None:intergenic | 30.0% |
CAACATAACTGATATTTCAG+AGG | - | chr6_3:90138334-90138353 | Msa0964050:intron | 30.0% | |
ATAACTGATATTTCAGAGGT+TGG | - | chr6_3:90138338-90138357 | Msa0964050:intron | 30.0% | |
TAGGAACTCTTCAGATATTT+GGG | + | chr6_3:90138749-90138768 | None:intergenic | 30.0% | |
TTAGGAACTCTTCAGATATT+TGG | + | chr6_3:90138750-90138769 | None:intergenic | 30.0% | |
GAACAATTTCACATGCAAAA+GGG | + | chr6_3:90139059-90139078 | None:intergenic | 30.0% | |
AGAACAATTTCACATGCAAA+AGG | + | chr6_3:90139060-90139079 | None:intergenic | 30.0% | |
ATTCACATCTGCTAAGTAAA+GGG | + | chr6_3:90139088-90139107 | None:intergenic | 30.0% | |
AATTCACATCTGCTAAGTAA+AGG | + | chr6_3:90139089-90139108 | None:intergenic | 30.0% | |
CTCACTTACATCAAATTCAT+TGG | - | chr6_3:90139290-90139309 | Msa0964050:intron | 30.0% | |
AACTATTCACTTTCTGCTAT+TGG | - | chr6_3:90139473-90139492 | Msa0964050:intron | 30.0% | |
!! | TATAAAGTGTTGGTGTTACA+AGG | + | chr6_3:90139585-90139604 | None:intergenic | 30.0% |
ACGACTTCAATATAAAGTGT+TGG | + | chr6_3:90139595-90139614 | None:intergenic | 30.0% | |
!! | AAATATAGGAAGCACTAACA+CGG | + | chr6_3:90139689-90139708 | None:intergenic | 30.0% |
!! | TCAAGACGGACTAAAAATAT+AGG | + | chr6_3:90139703-90139722 | None:intergenic | 30.0% |
! | GATGATCTTGTTTAAATTGC+AGG | - | chr6_3:90140152-90140171 | Msa0964050:intron | 30.0% |
ACATCAATAGAAGATTTCAG+AGG | - | chr6_3:90140261-90140280 | Msa0964050:intron | 30.0% | |
CATCAATAGAAGATTTCAGA+GGG | - | chr6_3:90140262-90140281 | Msa0964050:intron | 30.0% | |
TATTGTTTGGATGAGGAAAT+TGG | + | chr6_3:90140321-90140340 | None:intergenic | 30.0% | |
! | AATTGGACTTTTGCATGTGA+GGG | + | chr6_3:90135047-90135066 | None:intergenic | 35.0% |
TAAGCATTTGGAGGATTATC+TGG | + | chr6_3:90135083-90135102 | None:intergenic | 35.0% | |
CAAATGCTTACTCATCCAAA+CGG | - | chr6_3:90135093-90135112 | Msa0964050:three_prime_UTR | 35.0% | |
TGCAATTATGAATCACCGTT+TGG | + | chr6_3:90135111-90135130 | None:intergenic | 35.0% | |
CTTTCTGCAAGATTCAGAAA+AGG | + | chr6_3:90135242-90135261 | None:intergenic | 35.0% | |
! | AGAATTGCTAGTTCTCATCT+GGG | + | chr6_3:90135304-90135323 | None:intergenic | 35.0% |
! | ATTTTGAACCCAACTCTACT+AGG | + | chr6_3:90135372-90135391 | None:intergenic | 35.0% |
TTAACAGTAACACTCAGATC+AGG | + | chr6_3:90135423-90135442 | None:intergenic | 35.0% | |
! | GATCTGAGTGTTACTGTTAA+TGG | - | chr6_3:90135423-90135442 | Msa0964050:intron | 35.0% |
ATGCCAAATCCATTTGTGAT+TGG | - | chr6_3:90135453-90135472 | Msa0964050:intron | 35.0% | |
! | GATCCAATCACAAATGGATT+TGG | + | chr6_3:90135459-90135478 | None:intergenic | 35.0% |
AATCCATTTGTGATTGGATC+AGG | - | chr6_3:90135459-90135478 | Msa0964050:intron | 35.0% | |
ATGAAAAGAGCCTTTGATGA+AGG | - | chr6_3:90135507-90135526 | Msa0964050:intron | 35.0% | |
!! | TTGAGTGTTTGATTTGTTGG+TGG | - | chr6_3:90135859-90135878 | Msa0964050:intron | 35.0% |
!! | TGAGTGTTTGATTTGTTGGT+GGG | - | chr6_3:90135860-90135879 | Msa0964050:intron | 35.0% |
AAATACACACAAGGGGAAAT+TGG | - | chr6_3:90136225-90136244 | Msa0964050:intron | 35.0% | |
!! | GGTTTTTAAGGGGTTTTTGT+TGG | + | chr6_3:90136270-90136289 | None:intergenic | 35.0% |
!! | GGTTTGTTTTTCAAAGGGTT+TGG | + | chr6_3:90136508-90136527 | None:intergenic | 35.0% |
!!! | AGGTCGGTTTGTTTTTCAAA+GGG | + | chr6_3:90136513-90136532 | None:intergenic | 35.0% |
! | GTTGGTATTTCCATCTTTTG+TGG | - | chr6_3:90136668-90136687 | Msa0964050:CDS | 35.0% |
!! | TTGTTTGTACCGATTAGGAA+AGG | - | chr6_3:90136736-90136755 | Msa0964050:intron | 35.0% |
!! | TGTTTGTACCGATTAGGAAA+GGG | - | chr6_3:90136737-90136756 | Msa0964050:intron | 35.0% |
GATCTGTATGATGCTAATTG+TGG | - | chr6_3:90136809-90136828 | Msa0964050:intron | 35.0% | |
AATGTGAGAGTGAGTTGTAA+AGG | - | chr6_3:90136893-90136912 | Msa0964050:intron | 35.0% | |
!! | TTGTAAAGGAGTCTTGTTCT+TGG | - | chr6_3:90136907-90136926 | Msa0964050:intron | 35.0% |
! | AATGTGTTTGAGAGTGTGTT+GGG | + | chr6_3:90136968-90136987 | None:intergenic | 35.0% |
TGGGATTCACATGATTTGAT+GGG | + | chr6_3:90137032-90137051 | None:intergenic | 35.0% | |
ATGGGATTCACATGATTTGA+TGG | + | chr6_3:90137033-90137052 | None:intergenic | 35.0% | |
GAATCCCATATAAATTTGGC+GGG | - | chr6_3:90137044-90137063 | Msa0964050:intron | 35.0% | |
TGTAATACAACTGAATGCAC+AGG | + | chr6_3:90137256-90137275 | None:intergenic | 35.0% | |
TTTGTTCAAATTCCTCTGTG+CGG | - | chr6_3:90137310-90137329 | Msa0964050:intron | 35.0% | |
AATGCAAATGGATCTGCAAA+AGG | - | chr6_3:90137702-90137721 | Msa0964050:intron | 35.0% | |
CAAAAGGAGAAATTATTGGG+TGG | - | chr6_3:90137718-90137737 | Msa0964050:intron | 35.0% | |
TCTTTCAACATGGTTTCAAG+CGG | + | chr6_3:90137771-90137790 | None:intergenic | 35.0% | |
AAGCGATGAGAATTCTATCA+GGG | + | chr6_3:90137818-90137837 | None:intergenic | 35.0% | |
AATTCTCATCGCTTCAATCA+TGG | - | chr6_3:90137824-90137843 | Msa0964050:intron | 35.0% | |
GAGTTGTAAGATGTGTTTCT+TGG | - | chr6_3:90137901-90137920 | Msa0964050:intron | 35.0% | |
! | TTACTTTGATGGTTCAATCG+CGG | + | chr6_3:90138044-90138063 | None:intergenic | 35.0% |
! | ACTACGTACAGTTACTTTGA+TGG | + | chr6_3:90138055-90138074 | None:intergenic | 35.0% |
! | ACGTAGTAAAAACTGGTTCA+AGG | - | chr6_3:90138068-90138087 | Msa0964050:CDS | 35.0% |
!!! | CAGGTCAGATTTTTCAAGAT+AGG | + | chr6_3:90138144-90138163 | None:intergenic | 35.0% |
ATAAACTTCTCATGTCCTCA+TGG | - | chr6_3:90138197-90138216 | Msa0964050:CDS | 35.0% | |
TTCTTGAAGAAGTTTGTGGA+TGG | - | chr6_3:90138267-90138286 | Msa0964050:intron | 35.0% | |
TTGTGGATGGATAAATGCAA+AGG | - | chr6_3:90138280-90138299 | Msa0964050:intron | 35.0% | |
! | AACGTAAAGCTTGTTTGGTT+GGG | + | chr6_3:90139026-90139045 | None:intergenic | 35.0% |
! | AGAAGAACGTAAAGCTTGTT+TGG | + | chr6_3:90139031-90139050 | None:intergenic | 35.0% |
AAATACAATCATGAGCGTCA+TGG | - | chr6_3:90139215-90139234 | Msa0964050:intron | 35.0% | |
AATACAATCATGAGCGTCAT+GGG | - | chr6_3:90139216-90139235 | Msa0964050:intron | 35.0% | |
TATTCACTTTCTGCTATTGG+TGG | - | chr6_3:90139476-90139495 | Msa0964050:intron | 35.0% | |
TGTAGTCACATTCAATCACT+TGG | - | chr6_3:90139660-90139679 | Msa0964050:intron | 35.0% | |
TACCATTGTCAGTATCAAGA+CGG | + | chr6_3:90139717-90139736 | None:intergenic | 35.0% | |
TGGTAGGATATTCTTTCCTT+TGG | - | chr6_3:90139732-90139751 | Msa0964050:intron | 35.0% | |
TCCCTTTAACAAGGAGAAAA+GGG | + | chr6_3:90139763-90139782 | None:intergenic | 35.0% | |
TTCCCTTTAACAAGGAGAAA+AGG | + | chr6_3:90139764-90139783 | None:intergenic | 35.0% | |
TATCAAGGATCAAATAGGGA+AGG | + | chr6_3:90139789-90139808 | None:intergenic | 35.0% | |
TTGATCCTTGATATTGAACG+TGG | - | chr6_3:90139796-90139815 | Msa0964050:intron | 35.0% | |
ATGAGATTCTTGCACTCAAT+AGG | - | chr6_3:90139991-90140010 | Msa0964050:intron | 35.0% | |
TGAGATTCTTGCACTCAATA+GGG | - | chr6_3:90139992-90140011 | Msa0964050:intron | 35.0% | |
!! | TTTTACTACACACACTGACT+TGG | - | chr6_3:90140491-90140510 | Msa0964050:CDS | 35.0% |
AGCAAGAAGCAATTAAGCAA+AGG | - | chr6_3:90140523-90140542 | Msa0964050:CDS | 35.0% | |
CAAAGGAAAGCCATAAAGAA+AGG | - | chr6_3:90140540-90140559 | Msa0964050:CDS | 35.0% | |
AGATTGCAAGCCTTTCTTTA+TGG | + | chr6_3:90140553-90140572 | None:intergenic | 35.0% | |
TGTGAAAGAAAGTGAAAGCA+TGG | - | chr6_3:90140599-90140618 | Msa0964050:five_prime_UTR | 35.0% | |
TATAGCTCTTGCAAATGAAG+TGG | - | chr6_3:90140675-90140694 | Msa0964050:five_prime_UTR | 35.0% | |
ACCATCATCATCAACTTTCA+TGG | - | chr6_3:90140829-90140848 | Msa0964050:five_prime_UTR | 35.0% | |
! | GAATTGGACTTTTGCATGTG+AGG | + | chr6_3:90135048-90135067 | None:intergenic | 40.0% |
TTGGATGAGTAAGCATTTGG+AGG | + | chr6_3:90135092-90135111 | None:intergenic | 40.0% | |
CGTTTGGATGAGTAAGCATT+TGG | + | chr6_3:90135095-90135114 | None:intergenic | 40.0% | |
AGGTGATTCTGAATCTGAGT+TGG | + | chr6_3:90135181-90135200 | None:intergenic | 40.0% | |
! | CAGAATTGCTAGTTCTCATC+TGG | + | chr6_3:90135305-90135324 | None:intergenic | 40.0% |
!!! | GGTTTTCATTGGATTGGTCT+AGG | - | chr6_3:90135331-90135350 | Msa0964050:CDS | 40.0% |
!! | TTCATTGGATTGGTCTAGGA+AGG | - | chr6_3:90135335-90135354 | Msa0964050:CDS | 40.0% |
ACAGTATAATTAGTCCCAGG+TGG | + | chr6_3:90135486-90135505 | None:intergenic | 40.0% | |
AAAGAGCCTTTGATGAAGGT+TGG | - | chr6_3:90135511-90135530 | Msa0964050:intron | 40.0% | |
AAGAGCCTTTGATGAAGGTT+GGG | - | chr6_3:90135512-90135531 | Msa0964050:intron | 40.0% | |
GAATACTGCATTGCAGATTG+CGG | - | chr6_3:90135689-90135708 | Msa0964050:intron | 40.0% | |
AATTGGTTGCCGTACAAACA+TGG | - | chr6_3:90136242-90136261 | Msa0964050:intron | 40.0% | |
TTGTTGGAGCCATGTTTGTA+CGG | + | chr6_3:90136254-90136273 | None:intergenic | 40.0% | |
!!! | TGGCATCTGTTTTTGTTGTG+CGG | + | chr6_3:90136440-90136459 | None:intergenic | 40.0% |
!!! | CAGGTCGGTTTGTTTTTCAA+AGG | + | chr6_3:90136514-90136533 | None:intergenic | 40.0% |
TTGTTCTTGGCTTCTTGCTA+TGG | - | chr6_3:90136920-90136939 | Msa0964050:intron | 40.0% | |
! | GAATGTGTTTGAGAGTGTGT+TGG | + | chr6_3:90136969-90136988 | None:intergenic | 40.0% |
CCATCCCGCCAAATTTATAT+GGG | + | chr6_3:90137051-90137070 | None:intergenic | 40.0% | |
CCATATAAATTTGGCGGGAT+GGG | - | chr6_3:90137049-90137068 | Msa0964050:intron | 40.0% | |
TTACACATTGTTCTCAACCG+CGG | - | chr6_3:90137271-90137290 | Msa0964050:intron | 40.0% | |
GAAGCGATGAGAATTCTATC+AGG | + | chr6_3:90137819-90137838 | None:intergenic | 40.0% | |
! | AAGAGTACAATAAAGCCGCA+TGG | - | chr6_3:90137847-90137866 | Msa0964050:intron | 40.0% |
AGAGTACAATAAAGCCGCAT+GGG | - | chr6_3:90137848-90137867 | Msa0964050:intron | 40.0% | |
ATCGATAGAGTCGAACAAAC+TGG | - | chr6_3:90137879-90137898 | Msa0964050:intron | 40.0% | |
GAGGTTGAACTATAACACGA+AGG | + | chr6_3:90137995-90138014 | None:intergenic | 40.0% | |
CTTGTTCAGGCCATTTAAAG+AGG | + | chr6_3:90138014-90138033 | None:intergenic | 40.0% | |
CTCTTTAAATGGCCTGAACA+AGG | - | chr6_3:90138012-90138031 | Msa0964050:CDS | 40.0% | |
AAAACCGAACCAGACATCAA+CGG | + | chr6_3:90138100-90138119 | None:intergenic | 40.0% | |
GCTCTTCTTGAAGAAGTTTG+TGG | - | chr6_3:90138263-90138282 | Msa0964050:intron | 40.0% | |
AAAGGCTACAGTTCCTGTTT+GGG | - | chr6_3:90138298-90138317 | Msa0964050:intron | 40.0% | |
AGTAGTACATCAGTTGCCAT+TGG | - | chr6_3:90138846-90138865 | Msa0964050:intron | 40.0% | |
AGTTGCCATTGGATCAAGAT+CGG | - | chr6_3:90138857-90138876 | Msa0964050:intron | 40.0% | |
ATTGTCCGATCTTGATCCAA+TGG | + | chr6_3:90138865-90138884 | None:intergenic | 40.0% | |
TCAGAATCTGGTGTACCATT+TGG | - | chr6_3:90138928-90138947 | Msa0964050:intron | 40.0% | |
! | ACGTAAAGCTTGTTTGGTTG+GGG | + | chr6_3:90139025-90139044 | None:intergenic | 40.0% |
! | GAACGTAAAGCTTGTTTGGT+TGG | + | chr6_3:90139027-90139046 | None:intergenic | 40.0% |
TTTCTGTTTGTAGCCAGCAA+GGG | - | chr6_3:90139155-90139174 | Msa0964050:intron | 40.0% | |
TTTGTTAGGTACTCAACTCC+AGG | - | chr6_3:90139362-90139381 | Msa0964050:intron | 40.0% | |
ATAACCTTCCCAAGTGCTAT+CGG | + | chr6_3:90139413-90139432 | None:intergenic | 40.0% | |
GCAGCTGAGTTTATTCTTCT+TGG | - | chr6_3:90139518-90139537 | Msa0964050:intron | 40.0% | |
GGTGATTCTTTCATCATACC+TGG | + | chr6_3:90139556-90139575 | None:intergenic | 40.0% | |
!! | GTTGGTGTTACAAGGCTAAA+AGG | + | chr6_3:90139577-90139596 | None:intergenic | 40.0% |
! | TGTCTGAAACTGACACATGT+CGG | + | chr6_3:90139627-90139646 | None:intergenic | 40.0% |
GTCTTGATACTGACAATGGT+AGG | - | chr6_3:90139716-90139735 | Msa0964050:intron | 40.0% | |
TTTAACAAGGAGAAAAGGGG+TGG | + | chr6_3:90139759-90139778 | None:intergenic | 40.0% | |
! | ACCCCTTTTCTCCTTGTTAA+AGG | - | chr6_3:90139758-90139777 | Msa0964050:intron | 40.0% |
CCCTTTAACAAGGAGAAAAG+GGG | + | chr6_3:90139762-90139781 | None:intergenic | 40.0% | |
! | CCCCTTTTCTCCTTGTTAAA+GGG | - | chr6_3:90139759-90139778 | Msa0964050:intron | 40.0% |
!! | GGAAGGTATTCCCTTTAACA+AGG | + | chr6_3:90139772-90139791 | None:intergenic | 40.0% |
AGTAACCAGGCAAAGAATCA+GGG | + | chr6_3:90139825-90139844 | None:intergenic | 40.0% | |
AAGTAACCAGGCAAAGAATC+AGG | + | chr6_3:90139826-90139845 | None:intergenic | 40.0% | |
TGATTCTTTGCCTGGTTACT+TGG | - | chr6_3:90139825-90139844 | Msa0964050:intron | 40.0% | |
GATTCTTTGCCTGGTTACTT+GGG | - | chr6_3:90139826-90139845 | Msa0964050:intron | 40.0% | |
! | CTAACGAAAGCATGCTTAGT+GGG | - | chr6_3:90140020-90140039 | Msa0964050:intron | 40.0% |
! | TAACGAAAGCATGCTTAGTG+GGG | - | chr6_3:90140021-90140040 | Msa0964050:intron | 40.0% |
! | TTTGATAGCCTGTTGCTCTT+CGG | - | chr6_3:90140074-90140093 | Msa0964050:intron | 40.0% |
TTTAAATTGCAGGTGTGCAC+TGG | - | chr6_3:90140162-90140181 | Msa0964050:intron | 40.0% | |
GCTTGCAATCTGATAAAGAC+TGG | - | chr6_3:90140562-90140581 | Msa0964050:CDS | 40.0% | |
CAATCTGATAAAGACTGGAC+AGG | - | chr6_3:90140567-90140586 | Msa0964050:exon | 40.0% | |
TCTTGCAAATGAAGTGGTGA+AGG | - | chr6_3:90140681-90140700 | Msa0964050:five_prime_UTR | 40.0% | |
!! | GCCATGAAAGTTGATGATGA+TGG | + | chr6_3:90140833-90140852 | None:intergenic | 40.0% |
AGAACTAGCAATTCTGCACC+TGG | - | chr6_3:90135309-90135328 | Msa0964050:CDS | 45.0% | |
GAACTAGCAATTCTGCACCT+GGG | - | chr6_3:90135310-90135329 | Msa0964050:CDS | 45.0% | |
! | TTCTGCACCTGGGTTTTCAT+TGG | - | chr6_3:90135320-90135339 | Msa0964050:CDS | 45.0% |
! | CACCTGGGTTTTCATTGGAT+TGG | - | chr6_3:90135325-90135344 | Msa0964050:CDS | 45.0% |
GACCAATCCAATGAAAACCC+AGG | + | chr6_3:90135330-90135349 | None:intergenic | 45.0% | |
ATGCACGTCCTAGTAGAGTT+GGG | - | chr6_3:90135361-90135380 | Msa0964050:CDS | 45.0% | |
GGACCTGATCCAATCACAAA+TGG | + | chr6_3:90135465-90135484 | None:intergenic | 45.0% | |
AGAGCCTTTGATGAAGGTTG+GGG | - | chr6_3:90135513-90135532 | Msa0964050:intron | 45.0% | |
ATTGCAGATTGCGGTCTTTG+CGG | - | chr6_3:90135698-90135717 | Msa0964050:intron | 45.0% | |
CTTATTAGTGCGTCTTGCAC+GGG | + | chr6_3:90136190-90136209 | None:intergenic | 45.0% | |
GCTTATTAGTGCGTCTTGCA+CGG | + | chr6_3:90136191-90136210 | None:intergenic | 45.0% | |
GCAAGACGCACTAATAAGCT+CGG | - | chr6_3:90136192-90136211 | Msa0964050:intron | 45.0% | |
CAAGACGCACTAATAAGCTC+GGG | - | chr6_3:90136193-90136212 | Msa0964050:intron | 45.0% | |
!! | GAACAAAAGAGTACTGACGC+TGG | - | chr6_3:90136308-90136327 | Msa0964050:CDS | 45.0% |
ATCTTCGGCTGCTCTTTAGA+CGG | + | chr6_3:90136391-90136410 | None:intergenic | 45.0% | |
TGGGCTCTTGGTTGTATCTT+CGG | + | chr6_3:90136406-90136425 | None:intergenic | 45.0% | |
!!! | ATCTGTTTTTGTTGTGCGGG+AGG | + | chr6_3:90136436-90136455 | None:intergenic | 45.0% |
!!! | GGCATCTGTTTTTGTTGTGC+GGG | + | chr6_3:90136439-90136458 | None:intergenic | 45.0% |
!! | GTCTTGGAGGGTTTTGATCT+TGG | + | chr6_3:90136460-90136479 | None:intergenic | 45.0% |
CTGTTCACATGTGTCTTGGA+GGG | + | chr6_3:90136472-90136491 | None:intergenic | 45.0% | |
! | TTTTCAAAGGGTTTGGCTGC+TGG | + | chr6_3:90136501-90136520 | None:intergenic | 45.0% |
CAATCTTCCTTCTGCTGTCT+CGG | + | chr6_3:90136543-90136562 | None:intergenic | 45.0% | |
!!! | GTGTTGATGTTTTGGTGGCA+GGG | + | chr6_3:90136580-90136599 | None:intergenic | 45.0% |
!!! | AGTGTTGATGTTTTGGTGGC+AGG | + | chr6_3:90136581-90136600 | None:intergenic | 45.0% |
TCGCATGACCCTTTCCTAAT+CGG | + | chr6_3:90136748-90136767 | None:intergenic | 45.0% | |
CCCATATAAATTTGGCGGGA+TGG | - | chr6_3:90137048-90137067 | Msa0964050:intron | 45.0% | |
CCCATCCCGCCAAATTTATA+TGG | + | chr6_3:90137052-90137071 | None:intergenic | 45.0% | |
GCAAACAACTCGCTGTATCT+CGG | - | chr6_3:90137188-90137207 | Msa0964050:intron | 45.0% | |
GCTCTAGCACTATAGAGTAG+CGG | + | chr6_3:90137424-90137443 | None:intergenic | 45.0% | |
ATGTAACTCCTCGTTATGCC+CGG | - | chr6_3:90137670-90137689 | Msa0964050:intron | 45.0% | |
AACCGAACTAGACATCGATC+CGG | - | chr6_3:90137964-90137983 | Msa0964050:CDS | 45.0% | |
!! | TCGCGGTTTTATCCTTGTTC+AGG | + | chr6_3:90138027-90138046 | None:intergenic | 45.0% |
AAACCGAACCAGACATCAAC+GGG | + | chr6_3:90138099-90138118 | None:intergenic | 45.0% | |
CAAAGGCTACAGTTCCTGTT+TGG | - | chr6_3:90138297-90138316 | Msa0964050:intron | 45.0% | |
TCGAGATCAGATGGTCCAAA+TGG | + | chr6_3:90138946-90138965 | None:intergenic | 45.0% | |
GTTGTTGGATCGAGATCAGA+TGG | + | chr6_3:90138955-90138974 | None:intergenic | 45.0% | |
! | CGTAAAGCTTGTTTGGTTGG+GGG | + | chr6_3:90139024-90139043 | None:intergenic | 45.0% |
GTTTCTGTTTGTAGCCAGCA+AGG | - | chr6_3:90139154-90139173 | Msa0964050:intron | 45.0% | |
! | GCTTTTGCAGAATAACCACC+TGG | + | chr6_3:90139383-90139402 | None:intergenic | 45.0% |
CAGTTCATCCGATAGCACTT+GGG | - | chr6_3:90139402-90139421 | Msa0964050:intron | 45.0% | |
! | TCTTGGTGCAAATACTGTCC+AGG | - | chr6_3:90139535-90139554 | Msa0964050:intron | 45.0% |
TGTGACTACATGTGTCGTGT+CGG | + | chr6_3:90139650-90139669 | None:intergenic | 45.0% | |
GTCCGTCTTGATACTGACAA+TGG | - | chr6_3:90139712-90139731 | Msa0964050:intron | 45.0% | |
GGGATCCACGTTCAATATCA+AGG | + | chr6_3:90139804-90139823 | None:intergenic | 45.0% | |
GTAACCAGGCAAAGAATCAG+GGG | + | chr6_3:90139824-90139843 | None:intergenic | 45.0% | |
ACCACTATTCCCAAGTAACC+AGG | + | chr6_3:90139838-90139857 | None:intergenic | 45.0% | |
CCACTAAGCATGCTTTCGTT+AGG | + | chr6_3:90140022-90140041 | None:intergenic | 45.0% | |
! | CCTAACGAAAGCATGCTTAG+TGG | - | chr6_3:90140019-90140038 | Msa0964050:intron | 45.0% |
GATAAAGACTGGACAGGAGA+TGG | - | chr6_3:90140573-90140592 | Msa0964050:exon | 45.0% | |
!!! | TATTTTATTTTTTTTTGAAT+TGG | - | chr6_3:90136143-90136162 | Msa0964050:intron | 5.0% |
CATGCACGTCCTAGTAGAGT+TGG | - | chr6_3:90135360-90135379 | Msa0964050:CDS | 50.0% | |
TGATTGGATCAGGTCCACCT+GGG | - | chr6_3:90135469-90135488 | Msa0964050:intron | 50.0% | |
ACGCACTAATAAGCTCGGGT+GGG | - | chr6_3:90136197-90136216 | Msa0964050:intron | 50.0% | |
GCTGTTCACATGTGTCTTGG+AGG | + | chr6_3:90136473-90136492 | None:intergenic | 50.0% | |
!!! | GTGGCAGGGTGGTTTTGTTT+TGG | + | chr6_3:90136566-90136585 | None:intergenic | 50.0% |
!!! | TTGATGTTTTGGTGGCAGGG+TGG | + | chr6_3:90136577-90136596 | None:intergenic | 50.0% |
! | ACAGCGAGTTGTTTGCTGCA+GGG | + | chr6_3:90137184-90137203 | None:intergenic | 50.0% |
! | TACAGCGAGTTGTTTGCTGC+AGG | + | chr6_3:90137185-90137204 | None:intergenic | 50.0% |
ACAACTCGCTGTATCTCGGT+TGG | - | chr6_3:90137192-90137211 | Msa0964050:intron | 50.0% | |
CAACTCGCTGTATCTCGGTT+GGG | - | chr6_3:90137193-90137212 | Msa0964050:intron | 50.0% | |
AACTCGCTGTATCTCGGTTG+GGG | - | chr6_3:90137194-90137213 | Msa0964050:intron | 50.0% | |
AACTGAATGCACAGGAGACG+AGG | + | chr6_3:90137248-90137267 | None:intergenic | 50.0% | |
ACCGCGGATCGCAAAAATAG+CGG | - | chr6_3:90137287-90137306 | Msa0964050:intron | 50.0% | |
!!! | ACCGCTATTTTTGCGATCCG+CGG | + | chr6_3:90137291-90137310 | None:intergenic | 50.0% |
ATTTGCATTAGCCCGTAGCC+GGG | + | chr6_3:90137691-90137710 | None:intergenic | 50.0% | |
CATTTGCATTAGCCCGTAGC+CGG | + | chr6_3:90137692-90137711 | None:intergenic | 50.0% | |
GTACAATAAAGCCGCATGGG+AGG | - | chr6_3:90137851-90137870 | Msa0964050:intron | 50.0% | |
ATCGATAAGCTCCTCCCATG+CGG | + | chr6_3:90137865-90137884 | None:intergenic | 50.0% | |
CTATAACACGAAGGTCTCGC+CGG | + | chr6_3:90137986-90138005 | None:intergenic | 50.0% | |
CTCATGTCCTCATGGTATGC+CGG | - | chr6_3:90138205-90138224 | Msa0964050:intron | 50.0% | |
!! | GCAAAATGGGTGCTGCTGTT+GGG | - | chr6_3:90138231-90138250 | Msa0964050:intron | 50.0% |
GGAGTCATCTTAGCCCAAAC+AGG | + | chr6_3:90138314-90138333 | None:intergenic | 50.0% | |
! | CTACTGACTGCGTGAATGTG+TGG | + | chr6_3:90138831-90138850 | None:intergenic | 50.0% |
GTCAGCACAACTGTGGTTGT+TGG | + | chr6_3:90138970-90138989 | None:intergenic | 50.0% | |
TCATGCAGTCAGCACAACTG+TGG | + | chr6_3:90138977-90138996 | None:intergenic | 50.0% | |
GAACTTAGAGCAACCCTTGC+TGG | + | chr6_3:90139171-90139190 | None:intergenic | 50.0% | |
! | GCAAGGGTTGCTCTAAGTTC+AGG | - | chr6_3:90139171-90139190 | Msa0964050:intron | 50.0% |
! | TGCTCTAAGTTCAGGATGCG+AGG | - | chr6_3:90139179-90139198 | Msa0964050:intron | 50.0% |
! | GCTCTAAGTTCAGGATGCGA+GGG | - | chr6_3:90139180-90139199 | Msa0964050:intron | 50.0% |
GTTAGGTACTCAACTCCAGG+TGG | - | chr6_3:90139365-90139384 | Msa0964050:intron | 50.0% | |
GCAGTTCATCCGATAGCACT+TGG | - | chr6_3:90139401-90139420 | Msa0964050:intron | 50.0% | |
TCATCCGATAGCACTTGGGA+AGG | - | chr6_3:90139406-90139425 | Msa0964050:intron | 50.0% | |
!! | GCTATTGGTGGTGTTGAGAC+TGG | - | chr6_3:90139488-90139507 | Msa0964050:intron | 50.0% |
!! | ATTGGTGGTGTTGAGACTGG+TGG | - | chr6_3:90139491-90139510 | Msa0964050:intron | 50.0% |
GCCTGGTTACTTGGGAATAG+TGG | - | chr6_3:90139834-90139853 | Msa0964050:intron | 50.0% | |
GTTCAAGACCGAAGAGCAAC+AGG | + | chr6_3:90140085-90140104 | None:intergenic | 50.0% | |
GTTGCTCTTCGGTCTTGAAC+AGG | - | chr6_3:90140085-90140104 | Msa0964050:intron | 50.0% | |
GTCTTGAACAGGATTGTCCC+TGG | - | chr6_3:90140096-90140115 | Msa0964050:intron | 50.0% | |
TGAACAGGATTGTCCCTGGT+AGG | - | chr6_3:90140100-90140119 | Msa0964050:intron | 50.0% | |
TCAGACGTATCCTCCTACCA+GGG | + | chr6_3:90140116-90140135 | None:intergenic | 50.0% | |
! | TGCACTGGCGTTATGATGCA+TGG | - | chr6_3:90140177-90140196 | Msa0964050:intron | 50.0% |
GGCGTTATGATGCATGGCTA+TGG | - | chr6_3:90140183-90140202 | Msa0964050:intron | 50.0% | |
GAGAGAGAGAGAGAGAGAGA+GGG | + | chr6_3:90140360-90140379 | None:intergenic | 50.0% | |
AGAGAGAGAGAGAGAGAGAG+AGG | + | chr6_3:90140359-90140378 | None:intergenic | 50.0% | |
!! | CACACACTGACTTGGTGCAA+AGG | - | chr6_3:90140499-90140518 | Msa0964050:CDS | 50.0% |
GTGATTGGATCAGGTCCACC+TGG | - | chr6_3:90135468-90135487 | Msa0964050:intron | 55.0% | |
GCCTTTGATGAAGGTTGGGG+CGG | - | chr6_3:90135516-90135535 | Msa0964050:intron | 55.0% | |
ACCGCCCCAACCTTCATCAA+AGG | + | chr6_3:90135520-90135539 | None:intergenic | 55.0% | |
GACGCACTAATAAGCTCGGG+TGG | - | chr6_3:90136196-90136215 | Msa0964050:intron | 55.0% | |
! | TTGACGCAGGGGTATGCATG+TGG | + | chr6_3:90136351-90136370 | None:intergenic | 55.0% |
ATACCCCTGCGTCAACACCA+AGG | - | chr6_3:90136356-90136375 | Msa0964050:CDS | 55.0% | |
TGCTCTTTAGACGGTTGGGG+CGG | + | chr6_3:90136382-90136401 | None:intergenic | 55.0% | |
GGCTGCTCTTTAGACGGTTG+GGG | + | chr6_3:90136385-90136404 | None:intergenic | 55.0% | |
CGGCTGCTCTTTAGACGGTT+GGG | + | chr6_3:90136386-90136405 | None:intergenic | 55.0% | |
TCGGCTGCTCTTTAGACGGT+TGG | + | chr6_3:90136387-90136406 | None:intergenic | 55.0% | |
TTGTGCGGGAGGCTTCTGAT+GGG | + | chr6_3:90136425-90136444 | None:intergenic | 55.0% | |
GGCGCTGTTCACATGTGTCT+TGG | + | chr6_3:90136476-90136495 | None:intergenic | 55.0% | |
TCTTCCTTCTGCTGTCTCGG+TGG | + | chr6_3:90136540-90136559 | None:intergenic | 55.0% | |
AGGGTCATGCGACATGCAAC+TGG | - | chr6_3:90136756-90136775 | Msa0964050:intron | 55.0% | |
!! | GCTGCAGGGCTGGTTGATTA+AGG | + | chr6_3:90137170-90137189 | None:intergenic | 55.0% |
TATAGCACACTGCCGCACAG+AGG | + | chr6_3:90137325-90137344 | None:intergenic | 55.0% | |
! | CGGCTACGGGCTAATGCAAA+TGG | - | chr6_3:90137690-90137709 | Msa0964050:intron | 55.0% |
CGCCGGATCGATGTCTAGTT+CGG | + | chr6_3:90137969-90137988 | None:intergenic | 55.0% | |
AGGTTCAGCCCGTTGATGTC+TGG | - | chr6_3:90138088-90138107 | Msa0964050:CDS | 55.0% | |
CAGCCCGTTGATGTCTGGTT+CGG | - | chr6_3:90138093-90138112 | Msa0964050:CDS | 55.0% | |
TGGTATGCCGGAGCGCAAAA+TGG | - | chr6_3:90138217-90138236 | Msa0964050:intron | 55.0% | |
GGTATGCCGGAGCGCAAAAT+GGG | - | chr6_3:90138218-90138237 | Msa0964050:intron | 55.0% | |
!! | CGCAAAATGGGTGCTGCTGT+TGG | - | chr6_3:90138230-90138249 | Msa0964050:intron | 55.0% |
ATTGCCAACCCCTCAACGCA+AGG | + | chr6_3:90139270-90139289 | None:intergenic | 55.0% | |
GGAGAAAAGGGGTGGACCAA+AGG | + | chr6_3:90139751-90139770 | None:intergenic | 55.0% | |
GGATCCCCTGATTCTTTGCC+TGG | - | chr6_3:90139817-90139836 | Msa0964050:intron | 55.0% | |
ACAGGATTGTCCCTGGTAGG+AGG | - | chr6_3:90140103-90140122 | Msa0964050:intron | 55.0% | |
CTCAGACGTATCCTCCTACC+AGG | + | chr6_3:90140117-90140136 | None:intergenic | 55.0% | |
TGCGTCTTGCACGGGCTTGT+TGG | + | chr6_3:90136182-90136201 | None:intergenic | 60.0% | |
!! | GGAGGCTTCTGATGGGCTCT+TGG | + | chr6_3:90136418-90136437 | None:intergenic | 60.0% |
GTTGTGCGGGAGGCTTCTGA+TGG | + | chr6_3:90136426-90136445 | None:intergenic | 60.0% | |
CAAAGGGTTTGGCTGCTGGC+AGG | + | chr6_3:90136497-90136516 | None:intergenic | 60.0% | |
CTGTCTCGGTGGTGACAGGT+CGG | + | chr6_3:90136529-90136548 | None:intergenic | 60.0% | |
TCTGCTGTCTCGGTGGTGAC+AGG | + | chr6_3:90136533-90136552 | None:intergenic | 60.0% | |
GTCACCACCGAGACAGCAGA+AGG | - | chr6_3:90136533-90136552 | Msa0964050:intron | 60.0% | |
! | CGAGTTGTTTGCTGCAGGGC+TGG | + | chr6_3:90137180-90137199 | None:intergenic | 60.0% |
CTCCTCGTTATGCCCGGCTA+CGG | - | chr6_3:90137676-90137695 | Msa0964050:intron | 60.0% | |
TCCTCGTTATGCCCGGCTAC+GGG | - | chr6_3:90137677-90137696 | Msa0964050:intron | 60.0% | |
TTGCGCTCCGGCATACCATG+AGG | + | chr6_3:90138215-90138234 | None:intergenic | 60.0% | |
! | GCAGCACCCATTTTGCGCTC+CGG | + | chr6_3:90138227-90138246 | None:intergenic | 60.0% |
ACGTCCTGAGCCTTGCGTTG+AGG | - | chr6_3:90139257-90139276 | Msa0964050:intron | 60.0% | |
CGTCCTGAGCCTTGCGTTGA+GGG | - | chr6_3:90139258-90139277 | Msa0964050:intron | 60.0% | |
GTCCTGAGCCTTGCGTTGAG+GGG | - | chr6_3:90139259-90139278 | Msa0964050:intron | 60.0% | |
AACCCCTCAACGCAAGGCTC+AGG | + | chr6_3:90139264-90139283 | None:intergenic | 60.0% | |
TGAGCCTTGCGTTGAGGGGT+TGG | - | chr6_3:90139263-90139282 | Msa0964050:intron | 60.0% | |
!! | CGGCCTTGGTGTTGACGCAG+GGG | + | chr6_3:90136362-90136381 | None:intergenic | 65.0% |
!! | GCGGCCTTGGTGTTGACGCA+GGG | + | chr6_3:90136363-90136382 | None:intergenic | 65.0% |
TTAGACGGTTGGGGCGGCCT+TGG | + | chr6_3:90136376-90136395 | None:intergenic | 65.0% | |
!! | GGCGGCCTTGGTGTTGACGC+AGG | + | chr6_3:90136364-90136383 | None:intergenic | 70.0% |
GCCCGTAGCCGGGCATAACG+AGG | + | chr6_3:90137681-90137700 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 90134978 | 90140885 | 90134978 | ID=Msa0964050;Name=Msa0964050 |
chr6_3 | mRNA | 90134978 | 90140885 | 90134978 | ID=Msa0964050-mRNA-1;Parent=Msa0964050;Name=Msa0964050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=304|1|1|1|1|1|7|253|424 |
chr6_3 | exon | 90134978 | 90135387 | 90134978 | ID=Msa0964050-mRNA-1:exon:16227;Parent=Msa0964050-mRNA-1 |
chr6_3 | exon | 90135580 | 90135689 | 90135580 | ID=Msa0964050-mRNA-1:exon:16226;Parent=Msa0964050-mRNA-1 |
chr6_3 | exon | 90136307 | 90136493 | 90136307 | ID=Msa0964050-mRNA-1:exon:16225;Parent=Msa0964050-mRNA-1 |
chr6_3 | exon | 90136583 | 90136695 | 90136583 | ID=Msa0964050-mRNA-1:exon:16224;Parent=Msa0964050-mRNA-1 |
chr6_3 | exon | 90137508 | 90137678 | 90137508 | ID=Msa0964050-mRNA-1:exon:16223;Parent=Msa0964050-mRNA-1 |
chr6_3 | exon | 90137958 | 90138221 | 90137958 | ID=Msa0964050-mRNA-1:exon:16222;Parent=Msa0964050-mRNA-1 |
chr6_3 | exon | 90140309 | 90140885 | 90140309 | ID=Msa0964050-mRNA-1:exon:16221;Parent=Msa0964050-mRNA-1 |
chr6_3 | five_prime_UTR | 90140582 | 90140885 | 90140582 | ID=Msa0964050-mRNA-1:five_prime_utr;Parent=Msa0964050-mRNA-1 |
chr6_3 | CDS | 90140309 | 90140581 | 90140309 | ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1 |
chr6_3 | CDS | 90137958 | 90138221 | 90137958 | ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1 |
chr6_3 | CDS | 90137508 | 90137678 | 90137508 | ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1 |
chr6_3 | CDS | 90136583 | 90136695 | 90136583 | ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1 |
chr6_3 | CDS | 90136307 | 90136493 | 90136307 | ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1 |
chr6_3 | CDS | 90135580 | 90135689 | 90135580 | ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1 |
chr6_3 | CDS | 90135231 | 90135387 | 90135231 | ID=Msa0964050-mRNA-1:cds;Parent=Msa0964050-mRNA-1 |
chr6_3 | three_prime_UTR | 90134978 | 90135230 | 90134978 | ID=Msa0964050-mRNA-1:three_prime_utr;Parent=Msa0964050-mRNA-1 |
Gene Sequence |
Protein sequence |