Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963240 | A0A396HJD0 | 86.996 | 223 | 11 | 3 | 1 | 205 | 1 | 223 | 2.01e-90 | 274 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055730 | Msa0963240 | 0.816056 | 6.731447e-52 | -8.615850e-47 |
| Msa0689010 | Msa0963240 | 0.802748 | 4.842056e-49 | -8.615850e-47 |
| Msa0130570 | Msa0963240 | 0.808779 | 2.619067e-50 | -8.615850e-47 |
| Msa0173990 | Msa0963240 | 0.822111 | 2.820671e-53 | -8.615850e-47 |
| Msa0197660 | Msa0963240 | 0.807644 | 4.570387e-50 | -8.615850e-47 |
| Msa0419820 | Msa0963240 | 0.804037 | 2.617788e-49 | -8.615850e-47 |
| Msa0424920 | Msa0963240 | 0.811156 | 8.058314e-51 | -8.615850e-47 |
| Msa0239800 | Msa0963240 | 0.813159 | 2.946887e-51 | -8.615850e-47 |
| Msa0317510 | Msa0963240 | 0.813771 | 2.162116e-51 | -8.615850e-47 |
| Msa0897810 | Msa0963240 | 0.852484 | 4.479215e-61 | -8.615850e-47 |
| Msa0924450 | Msa0963240 | 0.881199 | 2.927829e-70 | -8.615850e-47 |
| Msa0963240 | Msa0998000 | 0.888220 | 7.160552e-73 | -8.615850e-47 |
| Msa0963240 | Msa1111750 | 0.819981 | 8.727922e-53 | -8.615850e-47 |
| Msa0963240 | Msa1154080 | 0.803711 | 3.060461e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963240 | MtrunA17_Chr6g0483521 | 86.996 | 223 | 11 | 3 | 1 | 205 | 1 | 223 | 3.86e-94 | 274 |
| Msa0963240 | MtrunA17_Chr6g0483561 | 63.404 | 235 | 54 | 7 | 1 | 205 | 1 | 233 | 1.33e-58 | 184 |
| Msa0963240 | MtrunA17_Chr6g0483581 | 61.111 | 234 | 61 | 5 | 1 | 205 | 1 | 233 | 7.36e-53 | 169 |
| Msa0963240 | MtrunA17_Chr6g0483511 | 57.843 | 204 | 49 | 7 | 1 | 186 | 1 | 185 | 3.85e-51 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGCAAGGTTCAGTATT+TGG | 0.171369 | 6_3:-87687027 | Msa0963240:three_prime_UTR |
| ATAAATTAGTGATGAAAATT+TGG | 0.190467 | 6_3:-87686861 | Msa0963240:three_prime_UTR |
| TTTGGTGAAGGAGGCTTCTT+AGG | 0.245817 | 6_3:+87687257 | None:intergenic |
| AGTAAGAATAGGGTGTTATT+TGG | 0.270687 | 6_3:-87686709 | Msa0963240:three_prime_UTR |
| TGGAGCAAGGTTCAGGATTT+AGG | 0.283843 | 6_3:+87687126 | None:intergenic |
| TCATAACAAGCCGCATAATT+AGG | 0.292030 | 6_3:-87687003 | Msa0963240:three_prime_UTR |
| TCATAACAAACCACATAATT+AGG | 0.295551 | 6_3:+87687149 | None:intergenic |
| TTCGTATTTGTCTTCTGCTT+TGG | 0.306809 | 6_3:+87689187 | None:intergenic |
| TTACACTCACAACAACTCTT+TGG | 0.313053 | 6_3:+87687329 | None:intergenic |
| AAATTTAGTGATTAAAGAAT+TGG | 0.317850 | 6_3:-87686797 | Msa0963240:three_prime_UTR |
| TCACAACAACTCTTTGGATT+AGG | 0.335774 | 6_3:+87687305 | None:intergenic |
| TTGTTGTCACAACAACTCTT+TGG | 0.338124 | 6_3:+87687299 | None:intergenic |
| GGTGGATAAGGGTTACAATA+AGG | 0.360536 | 6_3:-87686979 | Msa0963240:three_prime_UTR |
| GGTGGATAAGGGTTACAATA+AGG | 0.360536 | 6_3:+87687173 | None:intergenic |
| TGGAGCAAGGTTCAGTATTT+GGG | 0.362526 | 6_3:-87687026 | Msa0963240:three_prime_UTR |
| GCATAATTAGGTGGTGGATA+AGG | 0.365962 | 6_3:-87686991 | Msa0963240:three_prime_UTR |
| GGGTTACAATAAGGTTGATA+TGG | 0.366283 | 6_3:-87686970 | Msa0963240:three_prime_UTR |
| GGGTTACAATAAGGTTGATA+TGG | 0.366283 | 6_3:+87687182 | None:intergenic |
| ACATAATTAGGTGGTGGATA+AGG | 0.372201 | 6_3:+87687161 | None:intergenic |
| CACATGATGGAGCAAGGTTC+AGG | 0.380976 | 6_3:+87687119 | None:intergenic |
| CTTCTGCTTTGGAATTGAGC+TGG | 0.401133 | 6_3:+87689198 | None:intergenic |
| CATAATTAGGTGGTGGATAA+GGG | 0.401343 | 6_3:-87686990 | Msa0963240:three_prime_UTR |
| CATAATTAGGTGGTGGATAA+GGG | 0.408424 | 6_3:+87687162 | None:intergenic |
| TCATCTCAACAAGTAAGAAT+AGG | 0.416800 | 6_3:-87686720 | Msa0963240:three_prime_UTR |
| GATAGTTATAAAGTTGCAAA+TGG | 0.417360 | 6_3:-87688942 | Msa0963240:CDS |
| TTCAATAAAATTTGCAAGCA+TGG | 0.428519 | 6_3:-87686930 | Msa0963240:three_prime_UTR |
| TTCAATAAAATTTGCAAGCA+TGG | 0.428519 | 6_3:-87687081 | Msa0963240:three_prime_UTR |
| CACCTCTTCCACACTTAGAA+TGG | 0.439561 | 6_3:+87687562 | None:intergenic |
| CATCTCAACAAGTAAGAATA+GGG | 0.448825 | 6_3:-87686719 | Msa0963240:three_prime_UTR |
| AGGTGTGACTTCAGTATCAT+TGG | 0.469236 | 6_3:-87687678 | Msa0963240:CDS |
| TTATCCACCACCTAATTATG+TGG | 0.470527 | 6_3:-87687159 | Msa0963240:CDS |
| TGCACATGCCCAAGGTGTTA+TGG | 0.479494 | 6_3:-87687212 | Msa0963240:CDS |
| TGCACCATTGAGGACATTGT+TGG | 0.498194 | 6_3:+87687231 | None:intergenic |
| TCTTGCAATACTCATTGTAA+TGG | 0.500068 | 6_3:-87687431 | Msa0963240:CDS |
| CACCATTCTAAGTGTGGAAG+AGG | 0.501486 | 6_3:-87687564 | Msa0963240:CDS |
| TTTCAATTAAGCTAGGATGA+AGG | 0.501682 | 6_3:-87689106 | Msa0963240:intron |
| TTGTTTGTTTCAATTAAGCT+AGG | 0.504012 | 6_3:-87689113 | Msa0963240:five_prime_UTR |
| GCAGTTTCATAAAATTTACA+TGG | 0.530325 | 6_3:+87686669 | None:intergenic |
| AAATCCAACAATGTCCTCAA+TGG | 0.532773 | 6_3:-87687235 | Msa0963240:CDS |
| GAGCATAACCATAACACCTT+GGG | 0.533352 | 6_3:+87687204 | None:intergenic |
| ATACTTGTATACAATAATGA+TGG | 0.534366 | 6_3:-87687046 | Msa0963240:three_prime_UTR |
| GAATTGAGCTGGTTGTACAT+AGG | 0.539972 | 6_3:+87689209 | None:intergenic |
| CATAGTTCTTACTCACATGA+TGG | 0.542275 | 6_3:+87687106 | None:intergenic |
| CTTGGGCATGTGCACCATTG+AGG | 0.562407 | 6_3:+87687221 | None:intergenic |
| AACTGTGTCTACATTATCAC+CGG | 0.572592 | 6_3:+87687625 | None:intergenic |
| GGAGCATAACCATAACACCT+TGG | 0.600046 | 6_3:+87687203 | None:intergenic |
| CAAACCACATAATTAGGTGG+TGG | 0.606455 | 6_3:+87687155 | None:intergenic |
| TTATCCACCACCTAATTATG+CGG | 0.608945 | 6_3:+87686993 | None:intergenic |
| ATAGGTTATGATATATACAT+TGG | 0.611263 | 6_3:+87689227 | None:intergenic |
| CTTACTCACATGATGGAGCA+AGG | 0.612606 | 6_3:+87687113 | None:intergenic |
| CAAGCCGCATAATTAGGTGG+TGG | 0.615712 | 6_3:-87686997 | Msa0963240:three_prime_UTR |
| CTCAATGGTGCACATGCCCA+AGG | 0.619335 | 6_3:-87687220 | Msa0963240:CDS |
| CTGTGTCACCATTCTAAGTG+TGG | 0.620030 | 6_3:-87687570 | Msa0963240:CDS |
| GTGACTTCAGTATCATTGGA+AGG | 0.626567 | 6_3:-87687674 | Msa0963240:CDS |
| AAAGATAAGATATCTGTCAC+CGG | 0.627820 | 6_3:-87687644 | Msa0963240:CDS |
| TATACAATAATGATGGAGCA+AGG | 0.631525 | 6_3:-87687039 | Msa0963240:three_prime_UTR |
| TAACAAACCACATAATTAGG+TGG | 0.634252 | 6_3:+87687152 | None:intergenic |
| TTAGTGATGAAAATTTGGAG+AGG | 0.642063 | 6_3:-87686856 | Msa0963240:three_prime_UTR |
| TAACAAGCCGCATAATTAGG+TGG | 0.668059 | 6_3:-87687000 | Msa0963240:three_prime_UTR |
| TGTGGAAGTGCAAAATGTGA+TGG | 0.668591 | 6_3:-87687389 | Msa0963240:CDS |
| TGTGACAACAAGAAGTGTGA+TGG | 0.683170 | 6_3:-87687287 | Msa0963240:CDS |
| AGAGGTGAAGAAGAAAACCG+AGG | 0.721257 | 6_3:-87687546 | Msa0963240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAATACTAATAAAA+AGG | + | chr6_3:87686974-87686993 | None:intergenic | 10.0% |
| !! | ATTAAAATAAATATAGTGAT+TGG | + | chr6_3:87687153-87687172 | None:intergenic | 10.0% |
| !!! | CACTATATTTATTTTAATTA+TGG | - | chr6_3:87687155-87687174 | Msa0963240:CDS | 10.0% |
| !! | TTAATTATGGATTTAAATTA+TGG | - | chr6_3:87687168-87687187 | Msa0963240:CDS | 10.0% |
| !! | TAATTATGGATTTAAATTAT+GGG | - | chr6_3:87687169-87687188 | Msa0963240:CDS | 10.0% |
| !! | AAACAAAAAAAAAATTTAAG+GGG | - | chr6_3:87687365-87687384 | Msa0963240:CDS | 10.0% |
| !!! | TTTGATATTAATTTTATACT+AGG | + | chr6_3:87687628-87687647 | None:intergenic | 10.0% |
| !!! | AATTTTTTCTAATGATTATT+TGG | + | chr6_3:87687903-87687922 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAACTAGTTG+CGG | + | chr6_3:87686671-87686690 | None:intergenic | 15.0% |
| !!! | CAACTAGTTTTTTTTTTTTT+TGG | - | chr6_3:87686671-87686690 | Msa0963240:three_prime_UTR | 15.0% |
| !!! | TAGTTTTTTTTTTTTTTGGA+AGG | - | chr6_3:87686675-87686694 | Msa0963240:three_prime_UTR | 15.0% |
| !! | CTAACAAACTATTTATAAAA+TGG | - | chr6_3:87687026-87687045 | Msa0963240:three_prime_UTR | 15.0% |
| !!! | TTGTATACAATAATCTTTTA+AGG | - | chr6_3:87689114-87689133 | Msa0963240:five_prime_UTR | 15.0% |
| !! | ATAAATTAGTGATGAAAATT+TGG | - | chr6_3:87689144-87689163 | Msa0963240:five_prime_UTR | 15.0% |
| !! | AAATTTAGTGATTAAAGAAT+TGG | - | chr6_3:87689208-87689227 | Msa0963240:five_prime_UTR | 15.0% |
| !! | ATAGGTTATGATATATACAT+TGG | + | chr6_3:87686781-87686800 | None:intergenic | 20.0% |
| !! | ACAAAATAATTAAGGAAAAC+CGG | + | chr6_3:87687392-87687411 | None:intergenic | 20.0% |
| !! | AAAATCATGAGATTTATTGA+GGG | + | chr6_3:87687445-87687464 | None:intergenic | 20.0% |
| !! | TATGATTTCAATCTTACATA+TGG | - | chr6_3:87687559-87687578 | Msa0963240:CDS | 20.0% |
| !! | ATGATTTCAATCTTACATAT+GGG | - | chr6_3:87687560-87687579 | Msa0963240:CDS | 20.0% |
| !! | TGGGTATATATGAAAAAATT+TGG | - | chr6_3:87687579-87687598 | Msa0963240:CDS | 20.0% |
| !! | ATACTTGTATACAATAATGA+TGG | - | chr6_3:87688959-87688978 | Msa0963240:intron | 20.0% |
| !!! | AAATTTTATTGAAGGCATTA+TGG | + | chr6_3:87689068-87689087 | None:intergenic | 20.0% |
| !!! | GCTTCTTTTATTTTTCTGAT+TGG | + | chr6_3:87686862-87686881 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTCAATTAAGCT+AGG | - | chr6_3:87686892-87686911 | Msa0963240:three_prime_UTR | 25.0% |
| ! | GATAGTTATAAAGTTGCAAA+TGG | - | chr6_3:87687063-87687082 | Msa0963240:three_prime_UTR | 25.0% |
| ! | AAAAAAAAATTTAAGGGGAC+CGG | - | chr6_3:87687370-87687389 | Msa0963240:CDS | 25.0% |
| !!! | TCCTTAATTATTTTGTTCTC+AGG | - | chr6_3:87687396-87687415 | Msa0963240:CDS | 25.0% |
| ! | ACCTGAGAACAAAATAATTA+AGG | + | chr6_3:87687400-87687419 | None:intergenic | 25.0% |
| ! | GAAAATCATGAGATTTATTG+AGG | + | chr6_3:87687446-87687465 | None:intergenic | 25.0% |
| !!! | TAAACTCTCACTCTTTTTTT+TGG | - | chr6_3:87687479-87687498 | Msa0963240:CDS | 25.0% |
| ! | GATTATTTGGTTATGTTCTT+TGG | + | chr6_3:87687890-87687909 | None:intergenic | 25.0% |
| ! | TAAAGGTAAACACATATGTT+CGG | + | chr6_3:87688131-87688150 | None:intergenic | 25.0% |
| ! | CGAAAAATTGATGTCAAATA+CGG | + | chr6_3:87688204-87688223 | None:intergenic | 25.0% |
| !!! | TTCTTTCTTTTTTTCTTCCT+CGG | + | chr6_3:87688479-87688498 | None:intergenic | 25.0% |
| ! | AGAAGAAAAGAAAAAGATGA+TGG | - | chr6_3:87688516-87688535 | Msa0963240:intron | 25.0% |
| ! | TCATAACAAACCACATAATT+AGG | + | chr6_3:87688859-87688878 | None:intergenic | 25.0% |
| !! | ATGCTTGCAAATTTTATTGA+AGG | + | chr6_3:87688925-87688944 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTTGCAAGCA+TGG | - | chr6_3:87688924-87688943 | Msa0963240:intron | 25.0% |
| !! | ATGCTTGCAAATTTTATTGA+AGG | + | chr6_3:87688925-87688944 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTTGCAAGCA+TGG | - | chr6_3:87688924-87688943 | Msa0963240:intron | 25.0% |
| ! | GCAGTTTCATAAAATTTACA+TGG | + | chr6_3:87689339-87689358 | None:intergenic | 25.0% |
| !! | CATTGTCATTGTTTTGTGAA+AGG | + | chr6_3:87686713-87686732 | None:intergenic | 30.0% |
| TTTCAATTAAGCTAGGATGA+AGG | - | chr6_3:87686899-87686918 | Msa0963240:three_prime_UTR | 30.0% | |
| AATGCGATCAAAATTGCAAT+CGG | + | chr6_3:87687252-87687271 | None:intergenic | 30.0% | |
| TCTAACTACAAAGCAAACTA+TGG | + | chr6_3:87687332-87687351 | None:intergenic | 30.0% | |
| TTTGCTTTGTAGTTAGAAGT+AGG | - | chr6_3:87687335-87687354 | Msa0963240:CDS | 30.0% | |
| GGTTGTATATAAAAGATGAG+AGG | - | chr6_3:87687500-87687519 | Msa0963240:CDS | 30.0% | |
| ! | AGAGGTTATATGAACTTTTG+TGG | - | chr6_3:87687518-87687537 | Msa0963240:CDS | 30.0% |
| CAAAACAACGACATAATTAG+CGG | - | chr6_3:87687644-87687663 | Msa0963240:CDS | 30.0% | |
| ACAATCAATCATGTTTGTGT+GGG | + | chr6_3:87687743-87687762 | None:intergenic | 30.0% | |
| GTAAAGTGAGAGAAAGATAA+AGG | + | chr6_3:87688148-87688167 | None:intergenic | 30.0% | |
| TCCAAAATACATGCATACAT+AGG | - | chr6_3:87688307-87688326 | Msa0963240:intron | 30.0% | |
| ! | ACCTATGTATGCATGTATTT+TGG | + | chr6_3:87688311-87688330 | None:intergenic | 30.0% |
| AAAGATAAGATATCTGTCAC+CGG | - | chr6_3:87688361-87688380 | Msa0963240:intron | 30.0% | |
| !!! | GAACTTTTTTTTCAGCATGT+TGG | + | chr6_3:87688413-87688432 | None:intergenic | 30.0% |
| TCTTGCAATACTCATTGTAA+TGG | - | chr6_3:87688574-87688593 | Msa0963240:intron | 30.0% | |
| TAACAAACCACATAATTAGG+TGG | + | chr6_3:87688856-87688875 | None:intergenic | 30.0% | |
| ! | TATACAATAATGATGGAGCA+AGG | - | chr6_3:87688966-87688985 | Msa0963240:intron | 30.0% |
| TTAGTGATGAAAATTTGGAG+AGG | - | chr6_3:87689149-87689168 | Msa0963240:five_prime_UTR | 30.0% | |
| TCATCTCAACAAGTAAGAAT+AGG | - | chr6_3:87689285-87689304 | Msa0963240:five_prime_UTR | 30.0% | |
| CATCTCAACAAGTAAGAATA+GGG | - | chr6_3:87689286-87689305 | Msa0963240:five_prime_UTR | 30.0% | |
| !! | AGTAAGAATAGGGTGTTATT+TGG | - | chr6_3:87689296-87689315 | Msa0963240:five_prime_UTR | 30.0% |
| TTCGTATTTGTCTTCTGCTT+TGG | + | chr6_3:87686821-87686840 | None:intergenic | 35.0% | |
| ATGCGATCAAAATTGCAATC+GGG | + | chr6_3:87687251-87687270 | None:intergenic | 35.0% | |
| CACAATCAATCATGTTTGTG+TGG | + | chr6_3:87687744-87687763 | None:intergenic | 35.0% | |
| AACTGTGTCTACATTATCAC+CGG | + | chr6_3:87688383-87688402 | None:intergenic | 35.0% | |
| AAGTGTGAAAAATGCACATG+TGG | - | chr6_3:87688598-87688617 | Msa0963240:intron | 35.0% | |
| TTACACTCACAACAACTCTT+TGG | + | chr6_3:87688679-87688698 | None:intergenic | 35.0% | |
| TCACAACAACTCTTTGGATT+AGG | + | chr6_3:87688673-87688692 | None:intergenic | 35.0% | |
| TTGTTGTCACAACAACTCTT+TGG | + | chr6_3:87688709-87688728 | None:intergenic | 35.0% | |
| !!! | CATTGTTGGATTTTTGGTGA+AGG | + | chr6_3:87688763-87688782 | None:intergenic | 35.0% |
| ! | TGAGGACATTGTTGGATTTT+TGG | + | chr6_3:87688769-87688788 | None:intergenic | 35.0% |
| AAATCCAACAATGTCCTCAA+TGG | - | chr6_3:87688770-87688789 | Msa0963240:intron | 35.0% | |
| !! | GGGTTACAATAAGGTTGATA+TGG | + | chr6_3:87689035-87689054 | None:intergenic | 35.0% |
| !! | CATAATTAGGTGGTGGATAA+GGG | + | chr6_3:87689015-87689034 | None:intergenic | 35.0% |
| !! | ACATAATTAGGTGGTGGATA+AGG | + | chr6_3:87688847-87688866 | None:intergenic | 35.0% |
| TTATCCACCACCTAATTATG+TGG | - | chr6_3:87688846-87688865 | Msa0963240:intron | 35.0% | |
| CATAGTTCTTACTCACATGA+TGG | + | chr6_3:87688902-87688921 | None:intergenic | 35.0% | |
| TCATAACAAGCCGCATAATT+AGG | - | chr6_3:87689002-87689021 | Msa0963240:intron | 35.0% | |
| TTATCCACCACCTAATTATG+CGG | + | chr6_3:87688846-87688865 | None:intergenic | 35.0% | |
| !! | CATAATTAGGTGGTGGATAA+GGG | - | chr6_3:87689015-87689034 | Msa0963240:intron | 35.0% |
| !! | GGGTTACAATAAGGTTGATA+TGG | - | chr6_3:87689035-87689054 | Msa0963240:intron | 35.0% |
| GAATTGAGCTGGTTGTACAT+AGG | + | chr6_3:87686799-87686818 | None:intergenic | 40.0% | |
| CTTCAAAATCCGCAATATCG+TGG | + | chr6_3:87687213-87687232 | None:intergenic | 40.0% | |
| AGGTGTGACTTCAGTATCAT+TGG | - | chr6_3:87688327-87688346 | Msa0963240:intron | 40.0% | |
| GTGACTTCAGTATCATTGGA+AGG | - | chr6_3:87688331-87688350 | Msa0963240:intron | 40.0% | |
| !! | GCATGTCGTACTGTTTTGTT+TGG | - | chr6_3:87688541-87688560 | Msa0963240:intron | 40.0% |
| ! | TGTGGAAGTGCAAAATGTGA+TGG | - | chr6_3:87688616-87688635 | Msa0963240:intron | 40.0% |
| ! | TGTGACAACAAGAAGTGTGA+TGG | - | chr6_3:87688718-87688737 | Msa0963240:intron | 40.0% |
| !!! | TGTTGGATTTTTGGTGAAGG+AGG | + | chr6_3:87688760-87688779 | None:intergenic | 40.0% |
| GAGCATAACCATAACACCTT+GGG | + | chr6_3:87688804-87688823 | None:intergenic | 40.0% | |
| GGTGGATAAGGGTTACAATA+AGG | + | chr6_3:87689026-87689045 | None:intergenic | 40.0% | |
| CAAACCACATAATTAGGTGG+TGG | + | chr6_3:87688853-87688872 | None:intergenic | 40.0% | |
| ATGGAGCAAGGTTCAGTATT+TGG | - | chr6_3:87688978-87688997 | Msa0963240:intron | 40.0% | |
| TGGAGCAAGGTTCAGTATTT+GGG | - | chr6_3:87688979-87688998 | Msa0963240:intron | 40.0% | |
| TAACAAGCCGCATAATTAGG+TGG | - | chr6_3:87689005-87689024 | Msa0963240:intron | 40.0% | |
| !! | GCATAATTAGGTGGTGGATA+AGG | - | chr6_3:87689014-87689033 | Msa0963240:intron | 40.0% |
| GGTGGATAAGGGTTACAATA+AGG | - | chr6_3:87689026-87689045 | Msa0963240:intron | 40.0% | |
| !! | CTTCTGCTTTGGAATTGAGC+TGG | + | chr6_3:87686810-87686829 | None:intergenic | 45.0% |
| AAAACTGCTGCTGTGGTCAA+AGG | - | chr6_3:87687115-87687134 | Msa0963240:exon | 45.0% | |
| CAATATCGTGGTCCCAATTG+CGG | + | chr6_3:87687201-87687220 | None:intergenic | 45.0% | |
| CAATTGGGACCACGATATTG+CGG | - | chr6_3:87687201-87687220 | Msa0963240:CDS | 45.0% | |
| GTTTGCAGCGTAACGTTAAC+TGG | - | chr6_3:87687297-87687316 | Msa0963240:CDS | 45.0% | |
| ACACCACTTAAAGTCTCGTG+TGG | - | chr6_3:87687810-87687829 | Msa0963240:intron | 45.0% | |
| CTGTGTCACCATTCTAAGTG+TGG | - | chr6_3:87688435-87688454 | Msa0963240:intron | 45.0% | |
| CACCATTCTAAGTGTGGAAG+AGG | - | chr6_3:87688441-87688460 | Msa0963240:intron | 45.0% | |
| CACCTCTTCCACACTTAGAA+TGG | + | chr6_3:87688446-87688465 | None:intergenic | 45.0% | |
| AGAGGTGAAGAAGAAAACCG+AGG | - | chr6_3:87688459-87688478 | Msa0963240:intron | 45.0% | |
| TTTGGTGAAGGAGGCTTCTT+AGG | + | chr6_3:87688751-87688770 | None:intergenic | 45.0% | |
| TGCACCATTGAGGACATTGT+TGG | + | chr6_3:87688777-87688796 | None:intergenic | 45.0% | |
| GGAGCATAACCATAACACCT+TGG | + | chr6_3:87688805-87688824 | None:intergenic | 45.0% | |
| TGGAGCAAGGTTCAGGATTT+AGG | + | chr6_3:87688882-87688901 | None:intergenic | 45.0% | |
| ! | CTTACTCACATGATGGAGCA+AGG | + | chr6_3:87688895-87688914 | None:intergenic | 45.0% |
| !! | TAAAACAAAAAAAAAATTTA+AGG | - | chr6_3:87687363-87687382 | Msa0963240:CDS | 5.0% |
| !! | AAAACAAAAAAAAAATTTAA+GGG | - | chr6_3:87687364-87687383 | Msa0963240:CDS | 5.0% |
| !!! | TTTTTTACTAATTTTTTTAT+AGG | - | chr6_3:87689260-87689279 | Msa0963240:five_prime_UTR | 5.0% |
| AGCACTCAAAACTGCTGCTG+TGG | - | chr6_3:87687108-87687127 | Msa0963240:exon | 50.0% | |
| ! | TTATGGGCTGCAACCGCAAT+TGG | - | chr6_3:87687185-87687204 | Msa0963240:CDS | 50.0% |
| ! | TATGGGCTGCAACCGCAATT+GGG | - | chr6_3:87687186-87687205 | Msa0963240:CDS | 50.0% |
| CGTCCACACGAGACTTTAAG+TGG | + | chr6_3:87687816-87687835 | None:intergenic | 50.0% | |
| ! | TGCACATGCCCAAGGTGTTA+TGG | - | chr6_3:87688793-87688812 | Msa0963240:intron | 50.0% |
| ! | CACATGATGGAGCAAGGTTC+AGG | + | chr6_3:87688889-87688908 | None:intergenic | 50.0% |
| CAAGCCGCATAATTAGGTGG+TGG | - | chr6_3:87689008-87689027 | Msa0963240:intron | 50.0% | |
| CTTGGGCATGTGCACCATTG+AGG | + | chr6_3:87688787-87688806 | None:intergenic | 55.0% | |
| CTCAATGGTGCACATGCCCA+AGG | - | chr6_3:87688785-87688804 | Msa0963240:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 87686625 | 87689402 | 87686625 | ID=Msa0963240;Name=Msa0963240 |
| chr6_3 | mRNA | 87686625 | 87689402 | 87686625 | ID=Msa0963240-mRNA-1;Parent=Msa0963240;Name=Msa0963240-mRNA-1;_AED=0.17;_eAED=0.17;_QI=290|0.5|0.66|1|0|0.66|3|493|205 |
| chr6_3 | exon | 87686625 | 87687698 | 87686625 | ID=Msa0963240-mRNA-1:exon:15888;Parent=Msa0963240-mRNA-1 |
| chr6_3 | exon | 87688939 | 87688969 | 87688939 | ID=Msa0963240-mRNA-1:exon:15887;Parent=Msa0963240-mRNA-1 |
| chr6_3 | exon | 87689107 | 87689402 | 87689107 | ID=Msa0963240-mRNA-1:exon:15886;Parent=Msa0963240-mRNA-1 |
| chr6_3 | five_prime_UTR | 87689113 | 87689402 | 87689113 | ID=Msa0963240-mRNA-1:five_prime_utr;Parent=Msa0963240-mRNA-1 |
| chr6_3 | CDS | 87689107 | 87689112 | 87689107 | ID=Msa0963240-mRNA-1:cds;Parent=Msa0963240-mRNA-1 |
| chr6_3 | CDS | 87688939 | 87688969 | 87688939 | ID=Msa0963240-mRNA-1:cds;Parent=Msa0963240-mRNA-1 |
| chr6_3 | CDS | 87687118 | 87687698 | 87687118 | ID=Msa0963240-mRNA-1:cds;Parent=Msa0963240-mRNA-1 |
| chr6_3 | three_prime_UTR | 87686625 | 87687117 | 87686625 | ID=Msa0963240-mRNA-1:three_prime_utr;Parent=Msa0963240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
