Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924450 | XP_003620380.2 | 92.169 | 166 | 11 | 2 | 1 | 164 | 58 | 223 | 2.11e-64 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0924450 | 0.802310 | 5.960967e-49 | -8.615850e-47 |
| Msa0045790 | Msa0924450 | 0.800288 | 1.546371e-48 | -8.615850e-47 |
| Msa0046160 | Msa0924450 | 0.800287 | 1.547301e-48 | -8.615850e-47 |
| Msa0047030 | Msa0924450 | 0.802366 | 5.805429e-49 | -8.615850e-47 |
| Msa0057890 | Msa0924450 | 0.807990 | 3.858292e-50 | -8.615850e-47 |
| Msa0089630 | Msa0924450 | 0.821000 | 5.094509e-53 | -8.615850e-47 |
| Msa0639430 | Msa0924450 | 0.807094 | 5.977134e-50 | -8.615850e-47 |
| Msa0677410 | Msa0924450 | 0.808026 | 3.790976e-50 | -8.615850e-47 |
| Msa0682330 | Msa0924450 | 0.815337 | 9.734474e-52 | -8.615850e-47 |
| Msa0696450 | Msa0924450 | 0.810325 | 1.219261e-50 | -8.615850e-47 |
| Msa0130570 | Msa0924450 | 0.805096 | 1.574422e-49 | -8.615850e-47 |
| Msa0157290 | Msa0924450 | 0.802577 | 5.252521e-49 | -8.615850e-47 |
| Msa0173990 | Msa0924450 | 0.843271 | 1.552489e-58 | -8.615850e-47 |
| Msa0197660 | Msa0924450 | 0.827379 | 1.615937e-54 | -8.615850e-47 |
| Msa0366240 | Msa0924450 | 0.803571 | 3.270754e-49 | -8.615850e-47 |
| Msa0417880 | Msa0924450 | 0.807351 | 5.273267e-50 | -8.615850e-47 |
| Msa0419820 | Msa0924450 | 0.802852 | 4.609000e-49 | -8.615850e-47 |
| Msa0239800 | Msa0924450 | 0.826729 | 2.311750e-54 | -8.615850e-47 |
| Msa0244860 | Msa0924450 | 0.814551 | 1.454669e-51 | -8.615850e-47 |
| Msa0248970 | Msa0924450 | 0.803636 | 3.170809e-49 | -8.615850e-47 |
| Msa0277820 | Msa0924450 | 0.800840 | 1.193347e-48 | -8.615850e-47 |
| Msa0317510 | Msa0924450 | 0.835277 | 1.842346e-56 | -8.615850e-47 |
| Msa0317730 | Msa0924450 | 0.804007 | 2.655738e-49 | -8.615850e-47 |
| Msa0332000 | Msa0924450 | 0.801054 | 1.079049e-48 | -8.615850e-47 |
| Msa0484780 | Msa0924450 | 0.819821 | 9.494851e-53 | -8.615850e-47 |
| Msa0521540 | Msa0924450 | 0.804783 | 1.830389e-49 | -8.615850e-47 |
| Msa0546680 | Msa0924450 | 0.829778 | 4.255162e-55 | -8.615850e-47 |
| Msa0578040 | Msa0924450 | 0.806355 | 8.566054e-50 | -8.615850e-47 |
| Msa0880140 | Msa0924450 | 0.800424 | 1.450452e-48 | -8.615850e-47 |
| Msa0897810 | Msa0924450 | 0.895006 | 1.443098e-75 | -8.615850e-47 |
| Msa0924450 | Msa0959140 | 0.804671 | 1.931871e-49 | -8.615850e-47 |
| Msa0924450 | Msa0963240 | 0.881199 | 2.927829e-70 | -8.615850e-47 |
| Msa0924450 | Msa0979730 | 0.802843 | 4.628237e-49 | -8.615850e-47 |
| Msa0924450 | Msa0994950 | 0.804900 | 1.729901e-49 | -8.615850e-47 |
| Msa0924450 | Msa0998000 | 0.872791 | 2.424485e-67 | -8.615850e-47 |
| Msa0924450 | Msa1052830 | 0.801719 | 7.885849e-49 | -8.615850e-47 |
| Msa0924450 | Msa1065390 | 0.800208 | 1.605565e-48 | -8.615850e-47 |
| Msa0924450 | Msa1082500 | 0.823341 | 1.459055e-53 | -8.615850e-47 |
| Msa0924450 | Msa1084960 | 0.805502 | 1.294151e-49 | -8.615850e-47 |
| Msa0924450 | Msa1111750 | 0.800415 | 1.456985e-48 | -8.615850e-47 |
| Msa0924450 | Msa1165520 | 0.812489 | 4.132760e-51 | -8.615850e-47 |
| Msa0924450 | Msa1209460 | 0.808637 | 2.808467e-50 | -8.615850e-47 |
| Msa0924450 | Msa1238470 | 0.800739 | 1.251369e-48 | -8.615850e-47 |
| Msa0924450 | Msa1366600 | 0.807998 | 3.843289e-50 | -8.615850e-47 |
| Msa0924450 | Msa1409870 | 0.802598 | 5.201017e-49 | -8.615850e-47 |
| Msa0924450 | Msa1463670 | 0.817317 | 3.510165e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924450 | MtrunA17_Chr6g0483521 | 92.169 | 166 | 11 | 2 | 1 | 164 | 58 | 223 | 1.94e-68 | 207 |
| Msa0924450 | MtrunA17_Chr6g0483561 | 64.407 | 177 | 47 | 6 | 2 | 164 | 59 | 233 | 2.67e-36 | 125 |
| Msa0924450 | MtrunA17_Chr6g0483581 | 61.364 | 176 | 54 | 4 | 2 | 164 | 59 | 233 | 4.15e-31 | 112 |
| Msa0924450 | MtrunA17_Chr6g0483511 | 56.849 | 146 | 42 | 6 | 2 | 145 | 59 | 185 | 7.89e-29 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGCAAGGTTCAGTATT+TGG | 0.171369 | 6_2:-66379798 | Msa0924450:three_prime_UTR |
| ATAAATTAGTGATGAAAATT+TGG | 0.223679 | 6_2:-66379632 | Msa0924450:three_prime_UTR |
| TTTGGTGAAGGAGGCTTCTT+AGG | 0.245817 | 6_2:+66380028 | None:intergenic |
| TCATAACAAACCACATAATT+AGG | 0.256697 | 6_2:+66379920 | None:intergenic |
| AGTAAGAATAGGGTGTTATT+TGG | 0.270687 | 6_2:-66379480 | Msa0924450:three_prime_UTR |
| ATGGAGCAAGGTTCAGGATT+TGG | 0.271607 | 6_2:+66379896 | None:intergenic |
| TCATAACAAGCCGCATAATT+AGG | 0.292030 | 6_2:-66379774 | Msa0924450:three_prime_UTR |
| TTCGTATTTGTCTTCTGCTT+TGG | 0.306809 | 6_2:+66381955 | None:intergenic |
| TTACACTCACAACAACTCTT+TGG | 0.313053 | 6_2:+66380100 | None:intergenic |
| AAATTTAGTGATTAAAGAAT+TGG | 0.317850 | 6_2:-66379568 | Msa0924450:three_prime_UTR |
| TCACAACAACTCTTTGGATT+AGG | 0.335774 | 6_2:+66380076 | None:intergenic |
| TGGAGCAAGGTTCAGGATTT+GGG | 0.344784 | 6_2:+66379897 | None:intergenic |
| GGTGGATAAGGGTTACAATA+AGG | 0.360536 | 6_2:-66379750 | Msa0924450:three_prime_UTR |
| GGTGGATAAGGGTTACAATA+AGG | 0.360536 | 6_2:+66379944 | None:intergenic |
| TGGAGCAAGGTTCAGTATTT+GGG | 0.362526 | 6_2:-66379797 | Msa0924450:three_prime_UTR |
| GCATAATTAGGTGGTGGATA+AGG | 0.365962 | 6_2:-66379762 | Msa0924450:three_prime_UTR |
| GGGTTACAATAAGGTTGATA+TGG | 0.366283 | 6_2:-66379741 | Msa0924450:three_prime_UTR |
| GGGTTACAATAAGGTTGATA+TGG | 0.366283 | 6_2:+66379953 | None:intergenic |
| ACATAATTAGGTGGTGGATA+AGG | 0.372201 | 6_2:+66379932 | None:intergenic |
| CACATGATGGAGCAAGGTTC+AGG | 0.380976 | 6_2:+66379890 | None:intergenic |
| CTTCTGCTTTGGAATTGAGC+TGG | 0.401133 | 6_2:+66381966 | None:intergenic |
| CATAATTAGGTGGTGGATAA+GGG | 0.401343 | 6_2:-66379761 | Msa0924450:three_prime_UTR |
| CATAATTAGGTGGTGGATAA+GGG | 0.408424 | 6_2:+66379933 | None:intergenic |
| TCATCTCAACAAGTAAGAAT+AGG | 0.416800 | 6_2:-66379491 | Msa0924450:three_prime_UTR |
| TTCAATAAAATTTGCAAGCA+TGG | 0.428519 | 6_2:-66379701 | Msa0924450:three_prime_UTR |
| TTCAATAAAATTTGCAAGCA+TGG | 0.428519 | 6_2:-66379852 | Msa0924450:three_prime_UTR |
| CACCTCTTCCACACTTAGAA+TGG | 0.439561 | 6_2:+66380333 | None:intergenic |
| CATCTCAACAAGTAAGAATA+GGG | 0.448825 | 6_2:-66379490 | Msa0924450:three_prime_UTR |
| AGGTGTGACTTCAGTATCAT+TGG | 0.469236 | 6_2:-66380449 | Msa0924450:five_prime_UTR |
| TTATCCACCACCTAATTATG+TGG | 0.470527 | 6_2:-66379930 | Msa0924450:CDS |
| TGCACATGCCCAAGGTGTTA+TGG | 0.479494 | 6_2:-66379983 | Msa0924450:CDS |
| TGCACCATTGAGGACATTGT+TGG | 0.498194 | 6_2:+66380002 | None:intergenic |
| TCTTGCAATACTCATTGTAA+TGG | 0.500068 | 6_2:-66380202 | Msa0924450:CDS |
| CACCATTCTAAGTGTGGAAG+AGG | 0.501486 | 6_2:-66380335 | Msa0924450:CDS |
| TTTCAATTAAGCTAGGATGA+AGG | 0.501682 | 6_2:-66381874 | Msa0924450:intron |
| TTGTTTGTTTCAATTAAGCT+AGG | 0.504012 | 6_2:-66381881 | Msa0924450:five_prime_UTR |
| GCAGTTTCATAAAATTTACA+TGG | 0.530325 | 6_2:+66379440 | None:intergenic |
| AAATCCAACAATGTCCTCAA+TGG | 0.532773 | 6_2:-66380006 | Msa0924450:CDS |
| GAGCATAACCATAACACCTT+GGG | 0.533352 | 6_2:+66379975 | None:intergenic |
| ATACTTGTATACAATAATGA+TGG | 0.534366 | 6_2:-66379817 | Msa0924450:three_prime_UTR |
| GAATTGAGCTGGTTGTACAT+AGG | 0.539972 | 6_2:+66381977 | None:intergenic |
| CATAGTTCTTACTCACATGA+TGG | 0.542275 | 6_2:+66379877 | None:intergenic |
| CTTGGGCATGTGCACCATTG+AGG | 0.562407 | 6_2:+66379992 | None:intergenic |
| AACTGTGTCTACATTATCAC+CGG | 0.572592 | 6_2:+66380396 | None:intergenic |
| GGAGCATAACCATAACACCT+TGG | 0.600046 | 6_2:+66379974 | None:intergenic |
| CAAACCACATAATTAGGTGG+TGG | 0.606455 | 6_2:+66379926 | None:intergenic |
| TTATCCACCACCTAATTATG+CGG | 0.608945 | 6_2:+66379764 | None:intergenic |
| ATAGGTTATGATATATACAT+TGG | 0.611263 | 6_2:+66381995 | None:intergenic |
| CTTACTCACATGATGGAGCA+AGG | 0.612606 | 6_2:+66379884 | None:intergenic |
| CAAGCCGCATAATTAGGTGG+TGG | 0.615712 | 6_2:-66379768 | Msa0924450:three_prime_UTR |
| CTCAATGGTGCACATGCCCA+AGG | 0.619335 | 6_2:-66379991 | Msa0924450:CDS |
| CTGTGTCACCATTCTAAGTG+TGG | 0.620030 | 6_2:-66380341 | Msa0924450:CDS |
| GTGACTTCAGTATCATTGGA+AGG | 0.626567 | 6_2:-66380445 | Msa0924450:five_prime_UTR |
| AAAGATAAGATATCTGTCAC+CGG | 0.627820 | 6_2:-66380415 | Msa0924450:five_prime_UTR |
| TATACAATAATGATGGAGCA+AGG | 0.631525 | 6_2:-66379810 | Msa0924450:three_prime_UTR |
| TAACAAACCACATAATTAGG+TGG | 0.634252 | 6_2:+66379923 | None:intergenic |
| TTAGTGATGAAAATTTGGAG+AGG | 0.642063 | 6_2:-66379627 | Msa0924450:three_prime_UTR |
| TAACAAGCCGCATAATTAGG+TGG | 0.668059 | 6_2:-66379771 | Msa0924450:three_prime_UTR |
| TGTGGAAGTGCAAAATGTGA+TGG | 0.668591 | 6_2:-66380160 | Msa0924450:CDS |
| AGAGGTGAAGAAGAAAACCG+AGG | 0.721257 | 6_2:-66380317 | Msa0924450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAATACTAATAAAA+AGG | + | chr6_2:66379743-66379762 | None:intergenic | 10.0% |
| !! | ATTAAAATAAATATAGTGAT+TGG | + | chr6_2:66379922-66379941 | None:intergenic | 10.0% |
| !!! | CACTATATTTATTTTAATTA+TGG | - | chr6_2:66379924-66379943 | Msa0924450:CDS | 10.0% |
| !! | TTAATTATGGATTTAAATTA+TGG | - | chr6_2:66379937-66379956 | Msa0924450:CDS | 10.0% |
| !! | TAATTATGGATTTAAATTAT+GGG | - | chr6_2:66379938-66379957 | Msa0924450:CDS | 10.0% |
| !! | AACAAAAAAAAATATTTAAG+GGG | - | chr6_2:66380135-66380154 | Msa0924450:CDS | 10.0% |
| !!! | TTTGATATTAATTTTATACT+AGG | + | chr6_2:66380398-66380417 | None:intergenic | 10.0% |
| !!! | AATTTTTTCTAATGATTATT+TGG | + | chr6_2:66380672-66380691 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAACTAGTTG+CGG | + | chr6_2:66379441-66379460 | None:intergenic | 15.0% |
| !! | CTAACAAACTATTTATAAAA+TGG | - | chr6_2:66379795-66379814 | Msa0924450:three_prime_UTR | 15.0% |
| !!! | TTGTATACAATAATCTTTTA+AGG | - | chr6_2:66381880-66381899 | Msa0924450:five_prime_UTR | 15.0% |
| !! | ATAAATTAGTGATGAAAATT+TGG | - | chr6_2:66381910-66381929 | Msa0924450:five_prime_UTR | 15.0% |
| !! | AAATTTAGTGATTAAAGAAT+TGG | - | chr6_2:66381974-66381993 | Msa0924450:five_prime_UTR | 15.0% |
| !!! | GCAACTAGTTTTTTTTTTTT+TGG | - | chr6_2:66379440-66379459 | Msa0924450:three_prime_UTR | 20.0% |
| !!! | CTAGTTTTTTTTTTTTTGGA+AGG | - | chr6_2:66379444-66379463 | Msa0924450:three_prime_UTR | 20.0% |
| !! | ATAGGTTATGATATATACAT+TGG | + | chr6_2:66379550-66379569 | None:intergenic | 20.0% |
| !! | ACAAAATAATTAAGGAAAAC+CGG | + | chr6_2:66380162-66380181 | None:intergenic | 20.0% |
| !! | AAAATCATGAGATTTATTGA+GGG | + | chr6_2:66380215-66380234 | None:intergenic | 20.0% |
| !! | TATGATTTCAATCTTACATA+TGG | - | chr6_2:66380329-66380348 | Msa0924450:CDS | 20.0% |
| !! | ATGATTTCAATCTTACATAT+GGG | - | chr6_2:66380330-66380349 | Msa0924450:CDS | 20.0% |
| !! | TGGGTATATATGAAAAAATT+TGG | - | chr6_2:66380349-66380368 | Msa0924450:CDS | 20.0% |
| !! | ATACTTGTATACAATAATGA+TGG | - | chr6_2:66381725-66381744 | Msa0924450:intron | 20.0% |
| !!! | AAATTTTATTGAAGGCATTA+TGG | + | chr6_2:66381834-66381853 | None:intergenic | 20.0% |
| !!! | GCTTCTTTTATTTTTCTGAT+TGG | + | chr6_2:66379631-66379650 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTCAATTAAGCT+AGG | - | chr6_2:66379661-66379680 | Msa0924450:three_prime_UTR | 25.0% |
| ! | GATAGTTATAAAGTTGCAAA+TGG | - | chr6_2:66379832-66379851 | Msa0924450:three_prime_UTR | 25.0% |
| ! | AAAAAAATATTTAAGGGGAC+CGG | - | chr6_2:66380140-66380159 | Msa0924450:CDS | 25.0% |
| !!! | TCCTTAATTATTTTGTTCTC+AGG | - | chr6_2:66380166-66380185 | Msa0924450:CDS | 25.0% |
| ! | ACCTGAGAACAAAATAATTA+AGG | + | chr6_2:66380170-66380189 | None:intergenic | 25.0% |
| ! | GAAAATCATGAGATTTATTG+AGG | + | chr6_2:66380216-66380235 | None:intergenic | 25.0% |
| !!! | TAAACTCTCACTCTTTTTTT+TGG | - | chr6_2:66380249-66380268 | Msa0924450:CDS | 25.0% |
| ! | GATTATTTGGTTATGTTCTT+TGG | + | chr6_2:66380659-66380678 | None:intergenic | 25.0% |
| ! | TAAAGGTAAACACATATGTT+CGG | + | chr6_2:66380900-66380919 | None:intergenic | 25.0% |
| !!! | TTCTTTCTTTTTTTCTTCCT+CGG | + | chr6_2:66381245-66381264 | None:intergenic | 25.0% |
| ! | AGAAGAAAAGAAAAAGATGA+TGG | - | chr6_2:66381282-66381301 | Msa0924450:intron | 25.0% |
| ! | TCATAACAAACCACATAATT+AGG | + | chr6_2:66381625-66381644 | None:intergenic | 25.0% |
| !! | ATGCTTGCAAATTTTATTGA+AGG | + | chr6_2:66381691-66381710 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTTGCAAGCA+TGG | - | chr6_2:66381690-66381709 | Msa0924450:intron | 25.0% |
| !! | ATGCTTGCAAATTTTATTGA+AGG | + | chr6_2:66381691-66381710 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTTGCAAGCA+TGG | - | chr6_2:66381690-66381709 | Msa0924450:intron | 25.0% |
| ! | GCAGTTTCATAAAATTTACA+TGG | + | chr6_2:66382105-66382124 | None:intergenic | 25.0% |
| !! | CATTGTCATTGTTTTGTGAA+AGG | + | chr6_2:66379482-66379501 | None:intergenic | 30.0% |
| TTTCAATTAAGCTAGGATGA+AGG | - | chr6_2:66379668-66379687 | Msa0924450:three_prime_UTR | 30.0% | |
| AATGCGATCAAAATTGCAAT+CGG | + | chr6_2:66380021-66380040 | None:intergenic | 30.0% | |
| TCTAACTACAAAGCAAACTA+TGG | + | chr6_2:66380101-66380120 | None:intergenic | 30.0% | |
| TTTGCTTTGTAGTTAGAAGT+AGG | - | chr6_2:66380104-66380123 | Msa0924450:CDS | 30.0% | |
| GGTTGTATATAAAAGATGAG+AGG | - | chr6_2:66380270-66380289 | Msa0924450:CDS | 30.0% | |
| ! | AGAGGTTATATGAACTTTTG+TGG | - | chr6_2:66380288-66380307 | Msa0924450:CDS | 30.0% |
| CAAAACAACGACATAATTAG+CGG | - | chr6_2:66380414-66380433 | Msa0924450:five_prime_UTR | 30.0% | |
| ACAATCAATCATGTTTGTGT+GGG | + | chr6_2:66380513-66380532 | None:intergenic | 30.0% | |
| GTAAAGTGAGAGAAAGATAA+AGG | + | chr6_2:66380917-66380936 | None:intergenic | 30.0% | |
| CATCGAAAAATTGATGTCAA+TGG | + | chr6_2:66380973-66380992 | None:intergenic | 30.0% | |
| GTGATTGAGAAATGATGTTA+TGG | + | chr6_2:66380996-66381015 | None:intergenic | 30.0% | |
| TCCAAAATACATGCATACAT+AGG | - | chr6_2:66381073-66381092 | Msa0924450:intron | 30.0% | |
| ! | ACCTATGTATGCATGTATTT+TGG | + | chr6_2:66381077-66381096 | None:intergenic | 30.0% |
| AAAGATAAGATATCTGTCAC+CGG | - | chr6_2:66381127-66381146 | Msa0924450:intron | 30.0% | |
| !!! | GAACTTTTTTTTCAGCATGT+TGG | + | chr6_2:66381179-66381198 | None:intergenic | 30.0% |
| TCTTGCAATACTCATTGTAA+TGG | - | chr6_2:66381340-66381359 | Msa0924450:intron | 30.0% | |
| ! | TTTTTGTCACAACAACTCTT+TGG | + | chr6_2:66381475-66381494 | None:intergenic | 30.0% |
| TAACAAACCACATAATTAGG+TGG | + | chr6_2:66381622-66381641 | None:intergenic | 30.0% | |
| ! | TATACAATAATGATGGAGCA+AGG | - | chr6_2:66381732-66381751 | Msa0924450:intron | 30.0% |
| TTAGTGATGAAAATTTGGAG+AGG | - | chr6_2:66381915-66381934 | Msa0924450:five_prime_UTR | 30.0% | |
| TCATCTCAACAAGTAAGAAT+AGG | - | chr6_2:66382051-66382070 | Msa0924450:five_prime_UTR | 30.0% | |
| CATCTCAACAAGTAAGAATA+GGG | - | chr6_2:66382052-66382071 | Msa0924450:five_prime_UTR | 30.0% | |
| !! | AGTAAGAATAGGGTGTTATT+TGG | - | chr6_2:66382062-66382081 | Msa0924450:five_prime_UTR | 30.0% |
| TTCGTATTTGTCTTCTGCTT+TGG | + | chr6_2:66379590-66379609 | None:intergenic | 35.0% | |
| ATGCGATCAAAATTGCAATC+GGG | + | chr6_2:66380020-66380039 | None:intergenic | 35.0% | |
| CACAATCAATCATGTTTGTG+TGG | + | chr6_2:66380514-66380533 | None:intergenic | 35.0% | |
| AACTGTGTCTACATTATCAC+CGG | + | chr6_2:66381149-66381168 | None:intergenic | 35.0% | |
| AAGTGTGAAAAATGCACATG+TGG | - | chr6_2:66381364-66381383 | Msa0924450:intron | 35.0% | |
| TTACACTCACAACAACTCTT+TGG | + | chr6_2:66381445-66381464 | None:intergenic | 35.0% | |
| TCACAACAACTCTTTGGATT+AGG | + | chr6_2:66381439-66381458 | None:intergenic | 35.0% | |
| ! | TGTGACAAAAAGAAGTGTGA+TGG | - | chr6_2:66381484-66381503 | Msa0924450:intron | 35.0% |
| !!! | CATTGTTGGATTTTTGGTGA+AGG | + | chr6_2:66381529-66381548 | None:intergenic | 35.0% |
| ! | TGAGGACATTGTTGGATTTT+TGG | + | chr6_2:66381535-66381554 | None:intergenic | 35.0% |
| AAATCCAACAATGTCCTCAA+TGG | - | chr6_2:66381536-66381555 | Msa0924450:intron | 35.0% | |
| !! | GGGTTACAATAAGGTTGATA+TGG | + | chr6_2:66381801-66381820 | None:intergenic | 35.0% |
| !! | CATAATTAGGTGGTGGATAA+GGG | + | chr6_2:66381781-66381800 | None:intergenic | 35.0% |
| !! | ACATAATTAGGTGGTGGATA+AGG | + | chr6_2:66381613-66381632 | None:intergenic | 35.0% |
| TTATCCACCACCTAATTATG+TGG | - | chr6_2:66381612-66381631 | Msa0924450:intron | 35.0% | |
| CATAGTTCTTACTCACATGA+TGG | + | chr6_2:66381668-66381687 | None:intergenic | 35.0% | |
| TCATAACAAGCCGCATAATT+AGG | - | chr6_2:66381768-66381787 | Msa0924450:intron | 35.0% | |
| TTATCCACCACCTAATTATG+CGG | + | chr6_2:66381612-66381631 | None:intergenic | 35.0% | |
| !! | CATAATTAGGTGGTGGATAA+GGG | - | chr6_2:66381781-66381800 | Msa0924450:intron | 35.0% |
| !! | GGGTTACAATAAGGTTGATA+TGG | - | chr6_2:66381801-66381820 | Msa0924450:intron | 35.0% |
| GAATTGAGCTGGTTGTACAT+AGG | + | chr6_2:66379568-66379587 | None:intergenic | 40.0% | |
| CTTCAAAATCCGCAATATCG+TGG | + | chr6_2:66379982-66380001 | None:intergenic | 40.0% | |
| AGGTGTGACTTCAGTATCAT+TGG | - | chr6_2:66381093-66381112 | Msa0924450:intron | 40.0% | |
| GTGACTTCAGTATCATTGGA+AGG | - | chr6_2:66381097-66381116 | Msa0924450:intron | 40.0% | |
| !! | GCATGTCGTACTGTTTTGTT+TGG | - | chr6_2:66381307-66381326 | Msa0924450:intron | 40.0% |
| ! | TGTGGAAGTGCAAAATGTGA+TGG | - | chr6_2:66381382-66381401 | Msa0924450:intron | 40.0% |
| !!! | TGTTGGATTTTTGGTGAAGG+AGG | + | chr6_2:66381526-66381545 | None:intergenic | 40.0% |
| GAGCATAACCATAACACCTT+GGG | + | chr6_2:66381570-66381589 | None:intergenic | 40.0% | |
| GGTGGATAAGGGTTACAATA+AGG | + | chr6_2:66381792-66381811 | None:intergenic | 40.0% | |
| CAAACCACATAATTAGGTGG+TGG | + | chr6_2:66381619-66381638 | None:intergenic | 40.0% | |
| ATGGAGCAAGGTTCAGTATT+TGG | - | chr6_2:66381744-66381763 | Msa0924450:intron | 40.0% | |
| TGGAGCAAGGTTCAGTATTT+GGG | - | chr6_2:66381745-66381764 | Msa0924450:intron | 40.0% | |
| TAACAAGCCGCATAATTAGG+TGG | - | chr6_2:66381771-66381790 | Msa0924450:intron | 40.0% | |
| !! | GCATAATTAGGTGGTGGATA+AGG | - | chr6_2:66381780-66381799 | Msa0924450:intron | 40.0% |
| GGTGGATAAGGGTTACAATA+AGG | - | chr6_2:66381792-66381811 | Msa0924450:intron | 40.0% | |
| !! | CTTCTGCTTTGGAATTGAGC+TGG | + | chr6_2:66379579-66379598 | None:intergenic | 45.0% |
| AAAACTGCTGCTGTGGTCAA+AGG | - | chr6_2:66379884-66379903 | Msa0924450:exon | 45.0% | |
| CAATATCGTGGTCCCAATTG+CGG | + | chr6_2:66379970-66379989 | None:intergenic | 45.0% | |
| CAATTGGGACCACGATATTG+CGG | - | chr6_2:66379970-66379989 | Msa0924450:CDS | 45.0% | |
| GTTTGCAGCGTAACGTTAAC+TGG | - | chr6_2:66380066-66380085 | Msa0924450:CDS | 45.0% | |
| CTGTGTCACCATTCTAAGTG+TGG | - | chr6_2:66381201-66381220 | Msa0924450:intron | 45.0% | |
| CACCATTCTAAGTGTGGAAG+AGG | - | chr6_2:66381207-66381226 | Msa0924450:intron | 45.0% | |
| CACCTCTTCCACACTTAGAA+TGG | + | chr6_2:66381212-66381231 | None:intergenic | 45.0% | |
| AGAGGTGAAGAAGAAAACCG+AGG | - | chr6_2:66381225-66381244 | Msa0924450:intron | 45.0% | |
| TTTGGTGAAGGAGGCTTCTT+AGG | + | chr6_2:66381517-66381536 | None:intergenic | 45.0% | |
| TGCACCATTGAGGACATTGT+TGG | + | chr6_2:66381543-66381562 | None:intergenic | 45.0% | |
| GGAGCATAACCATAACACCT+TGG | + | chr6_2:66381571-66381590 | None:intergenic | 45.0% | |
| TGGAGCAAGGTTCAGGATTT+GGG | + | chr6_2:66381648-66381667 | None:intergenic | 45.0% | |
| ATGGAGCAAGGTTCAGGATT+TGG | + | chr6_2:66381649-66381668 | None:intergenic | 45.0% | |
| ! | CTTACTCACATGATGGAGCA+AGG | + | chr6_2:66381661-66381680 | None:intergenic | 45.0% |
| !! | AAAACAAAAAAAAATATTTA+AGG | - | chr6_2:66380133-66380152 | Msa0924450:CDS | 5.0% |
| !! | AAACAAAAAAAAATATTTAA+GGG | - | chr6_2:66380134-66380153 | Msa0924450:CDS | 5.0% |
| !!! | TTTTTTACTAATTTTTTTAT+AGG | - | chr6_2:66382026-66382045 | Msa0924450:five_prime_UTR | 5.0% |
| AGCACTCAAAACTGCTGCTG+TGG | - | chr6_2:66379877-66379896 | Msa0924450:exon | 50.0% | |
| ! | TTATGGGCTGCAACCGCAAT+TGG | - | chr6_2:66379954-66379973 | Msa0924450:CDS | 50.0% |
| ! | TATGGGCTGCAACCGCAATT+GGG | - | chr6_2:66379955-66379974 | Msa0924450:CDS | 50.0% |
| GACACCACTTAAGTCTCGTG+TGG | - | chr6_2:66380579-66380598 | Msa0924450:intron | 50.0% | |
| TCGTCCACACGAGACTTAAG+TGG | + | chr6_2:66380586-66380605 | None:intergenic | 50.0% | |
| ! | TGCACATGCCCAAGGTGTTA+TGG | - | chr6_2:66381559-66381578 | Msa0924450:intron | 50.0% |
| ! | CACATGATGGAGCAAGGTTC+AGG | + | chr6_2:66381655-66381674 | None:intergenic | 50.0% |
| CAAGCCGCATAATTAGGTGG+TGG | - | chr6_2:66381774-66381793 | Msa0924450:intron | 50.0% | |
| CTTGGGCATGTGCACCATTG+AGG | + | chr6_2:66381553-66381572 | None:intergenic | 55.0% | |
| CTCAATGGTGCACATGCCCA+AGG | - | chr6_2:66381551-66381570 | Msa0924450:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 66379396 | 66382168 | 66379396 | ID=Msa0924450;Name=Msa0924450 |
| chr6_2 | mRNA | 66379396 | 66382168 | 66379396 | ID=Msa0924450-mRNA-1;Parent=Msa0924450;Name=Msa0924450-mRNA-1;_AED=0.18;_eAED=0.18;_QI=380|0|1|1|0|0.5|2|493|164 |
| chr6_2 | exon | 66379396 | 66380469 | 66379396 | ID=Msa0924450-mRNA-1:exon:10524;Parent=Msa0924450-mRNA-1 |
| chr6_2 | exon | 66381875 | 66382168 | 66381875 | ID=Msa0924450-mRNA-1:exon:10523;Parent=Msa0924450-mRNA-1 |
| chr6_2 | five_prime_UTR | 66381875 | 66382168 | 66381875 | ID=Msa0924450-mRNA-1:five_prime_utr;Parent=Msa0924450-mRNA-1 |
| chr6_2 | five_prime_UTR | 66380384 | 66380469 | 66380384 | ID=Msa0924450-mRNA-1:five_prime_utr;Parent=Msa0924450-mRNA-1 |
| chr6_2 | CDS | 66379889 | 66380383 | 66379889 | ID=Msa0924450-mRNA-1:cds;Parent=Msa0924450-mRNA-1 |
| chr6_2 | three_prime_UTR | 66379396 | 66379888 | 66379396 | ID=Msa0924450-mRNA-1:three_prime_utr;Parent=Msa0924450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
