Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897810 | XP_003620380.2 | 93.274 | 223 | 13 | 2 | 1 | 221 | 1 | 223 | 2.71e-105 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897810 | sp|Q5PNZ7|HIP46_ARATH | 39.130 | 92 | 56 | 0 | 1 | 92 | 1 | 92 | 1.16e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897810 | A0A396HJD0 | 93.274 | 223 | 13 | 2 | 1 | 221 | 1 | 223 | 1.29e-105 | 313 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007280 | Msa0897810 | 0.807565 | 4.749955e-50 | -8.615850e-47 |
| Msa0055730 | Msa0897810 | 0.809497 | 1.837734e-50 | -8.615850e-47 |
| Msa0055740 | Msa0897810 | 0.806782 | 6.958705e-50 | -8.615850e-47 |
| Msa0057890 | Msa0897810 | 0.805797 | 1.122418e-49 | -8.615850e-47 |
| Msa0089630 | Msa0897810 | 0.810551 | 1.089679e-50 | -8.615850e-47 |
| Msa0171300 | Msa0897810 | 0.809594 | 1.751918e-50 | -8.615850e-47 |
| Msa0173990 | Msa0897810 | 0.826151 | 3.174529e-54 | -8.615850e-47 |
| Msa0175780 | Msa0897810 | 0.805755 | 1.145389e-49 | -8.615850e-47 |
| Msa0197660 | Msa0897810 | 0.824541 | 7.632979e-54 | -8.615850e-47 |
| Msa0239800 | Msa0897810 | 0.824891 | 6.311883e-54 | -8.615850e-47 |
| Msa0277820 | Msa0897810 | 0.814035 | 1.890593e-51 | -8.615850e-47 |
| Msa0317510 | Msa0897810 | 0.829423 | 5.191013e-55 | -8.615850e-47 |
| Msa0546680 | Msa0897810 | 0.814117 | 1.813942e-51 | -8.615850e-47 |
| Msa0897810 | Msa0924450 | 0.895006 | 1.443098e-75 | -8.615850e-47 |
| Msa0897810 | Msa0963240 | 0.852484 | 4.479215e-61 | -8.615850e-47 |
| Msa0897810 | Msa0998000 | 0.870654 | 1.239338e-66 | -8.615850e-47 |
| Msa0897810 | Msa1026510 | 0.808235 | 3.421296e-50 | -8.615850e-47 |
| Msa0897810 | Msa1082500 | 0.811039 | 8.546230e-51 | -8.615850e-47 |
| Msa0897810 | Msa1111750 | 0.825700 | 4.063626e-54 | -8.615850e-47 |
| Msa0897810 | Msa1154080 | 0.833296 | 5.785351e-56 | -8.615850e-47 |
| Msa0897810 | Msa1165520 | 0.807650 | 4.557287e-50 | -8.615850e-47 |
| Msa0897810 | Msa1276530 | 0.804545 | 2.052319e-49 | -8.615850e-47 |
| Msa0897810 | Msa1463670 | 0.809135 | 2.197221e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897810 | MtrunA17_Chr6g0483521 | 93.274 | 223 | 13 | 2 | 1 | 221 | 1 | 223 | 2.49e-109 | 313 |
| Msa0897810 | MtrunA17_Chr6g0483561 | 68.085 | 235 | 59 | 6 | 1 | 221 | 1 | 233 | 1.48e-71 | 217 |
| Msa0897810 | MtrunA17_Chr6g0483581 | 66.239 | 234 | 65 | 4 | 1 | 221 | 1 | 233 | 6.73e-66 | 203 |
| Msa0897810 | MtrunA17_Chr6g0483511 | 63.235 | 204 | 54 | 6 | 1 | 202 | 1 | 185 | 5.21e-63 | 194 |
| Msa0897810 | MtrunA17_Chr2g0290831 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 2.95e-19 | 79.0 |
| Msa0897810 | MtrunA17_Chr5g0438551 | 50.000 | 92 | 43 | 2 | 3 | 91 | 2 | 93 | 3.47e-19 | 80.1 |
| Msa0897810 | MtrunA17_Chr3g0120551 | 48.000 | 75 | 39 | 0 | 2 | 76 | 3 | 77 | 7.99e-19 | 79.0 |
| Msa0897810 | MtrunA17_Chr3g0120541 | 48.148 | 81 | 41 | 1 | 2 | 82 | 3 | 82 | 4.71e-17 | 73.9 |
| Msa0897810 | MtrunA17_Chr3g0120531 | 47.887 | 71 | 36 | 1 | 2 | 71 | 3 | 73 | 1.44e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897810 | AT3G20180.3 | 50.000 | 82 | 41 | 0 | 1 | 82 | 1 | 82 | 5.69e-18 | 77.0 |
| Msa0897810 | AT3G20180.2 | 47.561 | 82 | 43 | 0 | 1 | 82 | 20 | 101 | 6.70e-17 | 74.7 |
| Msa0897810 | AT4G05030.2 | 45.946 | 74 | 40 | 0 | 1 | 74 | 1 | 74 | 9.40e-16 | 70.1 |
| Msa0897810 | AT3G20180.4 | 48.101 | 79 | 41 | 0 | 4 | 82 | 2 | 80 | 1.05e-15 | 71.2 |
| Msa0897810 | AT5G48290.1 | 39.130 | 92 | 56 | 0 | 1 | 92 | 1 | 92 | 1.17e-15 | 72.4 |
| Msa0897810 | AT3G20180.1 | 48.684 | 76 | 39 | 0 | 7 | 82 | 3 | 78 | 1.62e-15 | 70.5 |
| Msa0897810 | AT4G05030.1 | 46.479 | 71 | 38 | 0 | 4 | 74 | 37 | 107 | 1.08e-14 | 68.2 |
| Msa0897810 | AT3G07600.1 | 43.678 | 87 | 49 | 0 | 1 | 87 | 1 | 87 | 2.14e-14 | 68.6 |
| Msa0897810 | AT5G48290.3 | 32.143 | 112 | 56 | 1 | 1 | 92 | 1 | 112 | 3.65e-11 | 60.8 |
| Msa0897810 | AT5G48290.2 | 36.585 | 82 | 52 | 0 | 11 | 92 | 1 | 82 | 4.63e-11 | 59.7 |
Find 68 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATTAGTGATGAAAATT+TGG | 0.190467 | 6_1:-90197023 | Msa0897810:three_prime_UTR |
| TTTGGTGAAGGAGGCTTCTT+AGG | 0.245817 | 6_1:+90197419 | None:intergenic |
| TCATAACAAACCACATAATT+AGG | 0.256697 | 6_1:+90197311 | None:intergenic |
| ATGGAGCAAGGTTCAGGATT+TGG | 0.271607 | 6_1:-90197189 | Msa0897810:three_prime_UTR |
| ATGGAGCAAGGTTCAGGATT+TGG | 0.271607 | 6_1:+90197287 | None:intergenic |
| TCATAACAAGCCGCATAATT+AGG | 0.292030 | 6_1:-90197165 | Msa0897810:three_prime_UTR |
| AGTGAGAATAGGGTGTTATT+TGG | 0.292984 | 6_1:-90196872 | Msa0897810:three_prime_UTR |
| TTGTATACAATAATCTATTA+AGG | 0.305934 | 6_1:-90197053 | Msa0897810:three_prime_UTR |
| TTCGTATTTGTCTTCTGCTT+TGG | 0.306809 | 6_1:+90199447 | None:intergenic |
| TTACACTCACAACAACTCTT+TGG | 0.313053 | 6_1:+90197491 | None:intergenic |
| AAATTTAGTGATTAAAGAAT+TGG | 0.317850 | 6_1:-90196959 | Msa0897810:three_prime_UTR |
| GCACAACAACTCTTTGGATT+AGG | 0.335774 | 6_1:+90197467 | None:intergenic |
| TGGAGCAAGGTTCAGGATTT+GGG | 0.344784 | 6_1:-90197188 | Msa0897810:three_prime_UTR |
| TGGAGCAAGGTTCAGGATTT+GGG | 0.344784 | 6_1:+90197288 | None:intergenic |
| TTGTTGGCACAACAACTCTT+TGG | 0.346460 | 6_1:+90197461 | None:intergenic |
| GGGTTACAATAAGGTTGATA+TGG | 0.356413 | 6_1:+90197344 | None:intergenic |
| GGTGGATAAGGGTTACAATA+AGG | 0.360536 | 6_1:-90197141 | Msa0897810:three_prime_UTR |
| GGTGGATAAGGGTTACAATA+AGG | 0.360536 | 6_1:+90197335 | None:intergenic |
| GCATAATTAGGTGGTGGATA+AGG | 0.365962 | 6_1:-90197153 | Msa0897810:three_prime_UTR |
| GGGTTACAATAAGGTTGATA+TGG | 0.366283 | 6_1:-90197132 | Msa0897810:three_prime_UTR |
| ACATAATTAGGTGGTGGATA+AGG | 0.372201 | 6_1:+90197323 | None:intergenic |
| CACATGATGGAGCAAGGTTC+AGG | 0.380976 | 6_1:+90197281 | None:intergenic |
| CTTCTGCTTTGGAATTGAGC+TGG | 0.401133 | 6_1:+90199458 | None:intergenic |
| CATAATTAGGTGGTGGATAA+GGG | 0.401343 | 6_1:-90197152 | Msa0897810:three_prime_UTR |
| CATAATTAGGTGGTGGATAA+GGG | 0.408424 | 6_1:+90197324 | None:intergenic |
| ATAATGATGGAGCAAGGTTC+AGG | 0.413294 | 6_1:-90197195 | Msa0897810:three_prime_UTR |
| GATAGTTATAAAGTTGCAAA+TGG | 0.417360 | 6_1:-90199202 | Msa0897810:CDS |
| TGCACATGCCCAAGGTGTTA+TGG | 0.418577 | 6_1:-90197374 | Msa0897810:CDS |
| TTCAATAAAATTTGCAAGCA+TGG | 0.428519 | 6_1:-90197092 | Msa0897810:three_prime_UTR |
| TTCAATAAAATTTGCAAGCA+TGG | 0.428519 | 6_1:-90197243 | Msa0897810:three_prime_UTR |
| TCATCTCAACAAGTGAGAAT+AGG | 0.433812 | 6_1:-90196883 | Msa0897810:three_prime_UTR |
| CACCTCTTCCACACTTAGAA+TGG | 0.439561 | 6_1:+90197724 | None:intergenic |
| GCAACCATCACACTTCTTGT+TGG | 0.439975 | 6_1:+90197445 | None:intergenic |
| CATCTCAACAAGTGAGAATA+GGG | 0.467152 | 6_1:-90196882 | Msa0897810:three_prime_UTR |
| GATAATAACCATAACACCTT+GGG | 0.468002 | 6_1:+90197366 | None:intergenic |
| AGGTGTGACTTCAGTATCAT+TGG | 0.469236 | 6_1:-90197840 | Msa0897810:CDS |
| TTATCCACCACCTAATTATG+TGG | 0.470527 | 6_1:-90197321 | Msa0897810:CDS |
| AAATCCAACAATGTCCTCAT+TGG | 0.477156 | 6_1:-90197397 | Msa0897810:CDS |
| TCTTGCAATACTCATTGTAA+TGG | 0.500068 | 6_1:-90197593 | Msa0897810:CDS |
| CACCATTCTAAGTGTGGAAG+AGG | 0.501486 | 6_1:-90197726 | Msa0897810:CDS |
| TTTCAATTAAGCTAGGATGA+AGG | 0.501682 | 6_1:-90199366 | Msa0897810:intron |
| TTGTTTGTTTCAATTAAGCT+AGG | 0.504012 | 6_1:-90199373 | Msa0897810:five_prime_UTR |
| TGCACCAATGAGGACATTGT+TGG | 0.507565 | 6_1:+90197393 | None:intergenic |
| GCAGTTTCATAAAATTTACA+TGG | 0.530325 | 6_1:+90196832 | None:intergenic |
| ATACTTGTATACAATAATGA+TGG | 0.534366 | 6_1:-90197208 | Msa0897810:three_prime_UTR |
| GAATTGAGCTGGTTGTACAT+AGG | 0.539972 | 6_1:+90199469 | None:intergenic |
| AGTGATTAAAGAATTGGTGA+TGG | 0.541862 | 6_1:-90196953 | Msa0897810:three_prime_UTR |
| CATAGTTCTTACTCACATGA+TGG | 0.542275 | 6_1:+90197268 | None:intergenic |
| GGATAATAACCATAACACCT+TGG | 0.546568 | 6_1:+90197365 | None:intergenic |
| CTCATTGGTGCACATGCCCA+AGG | 0.557345 | 6_1:-90197382 | Msa0897810:CDS |
| AACTGTGTCTACATTATCAC+CGG | 0.572592 | 6_1:+90197787 | None:intergenic |
| AGCACTCAAAACTGCTGCTG+AGG | 0.581320 | 6_1:-90199157 | Msa0897810:CDS |
| AAAACTGCTGCTGAGGTCAA+AGG | 0.586105 | 6_1:-90199150 | Msa0897810:intron |
| CAAACCACATAATTAGGTGG+TGG | 0.606455 | 6_1:+90197317 | None:intergenic |
| TTATCCACCACCTAATTATG+CGG | 0.608945 | 6_1:+90197155 | None:intergenic |
| ATAGGTTATGATATATACAT+TGG | 0.611263 | 6_1:+90199487 | None:intergenic |
| CTTACTCACATGATGGAGCA+AGG | 0.612606 | 6_1:+90197275 | None:intergenic |
| CAAGCCGCATAATTAGGTGG+TGG | 0.615712 | 6_1:-90197159 | Msa0897810:three_prime_UTR |
| CTGTGTCACCATTCTAAGTG+TGG | 0.620030 | 6_1:-90197732 | Msa0897810:CDS |
| CTTGGGCATGTGCACCAATG+AGG | 0.622472 | 6_1:+90197383 | None:intergenic |
| GTGACTTCAGTATCATTGGA+AGG | 0.626567 | 6_1:-90197836 | Msa0897810:CDS |
| AAAGATAAGATATCTGTCAC+CGG | 0.627820 | 6_1:-90197806 | Msa0897810:CDS |
| TATACAATAATGATGGAGCA+AGG | 0.631525 | 6_1:-90197201 | Msa0897810:three_prime_UTR |
| TAACAAACCACATAATTAGG+TGG | 0.634252 | 6_1:+90197314 | None:intergenic |
| TAACAAGCCGCATAATTAGG+TGG | 0.668059 | 6_1:-90197162 | Msa0897810:three_prime_UTR |
| TGTGGAAGTGCAAAATGTGA+TGG | 0.668591 | 6_1:-90197551 | Msa0897810:CDS |
| TGTGCCAACAAGAAGTGTGA+TGG | 0.675353 | 6_1:-90197449 | Msa0897810:CDS |
| AGAGGTGAAGAAGAAAACCG+AGG | 0.721257 | 6_1:-90197708 | Msa0897810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAATACTAATAAAA+AGG | + | chr6_1:90197162-90197181 | None:intergenic | 10.0% |
| !! | ATTAAAATAAATATAGTGAT+TGG | + | chr6_1:90197341-90197360 | None:intergenic | 10.0% |
| !!! | CACTATATTTATTTTAATTA+TGG | - | chr6_1:90197343-90197362 | Msa0897810:CDS | 10.0% |
| !! | TTAATTATGGATTTAAATTA+TGG | - | chr6_1:90197356-90197375 | Msa0897810:CDS | 10.0% |
| !! | TAATTATGGATTTAAATTAT+GGG | - | chr6_1:90197357-90197376 | Msa0897810:CDS | 10.0% |
| !! | ACAAAAAAAAAATATTTAAG+GGG | - | chr6_1:90197555-90197574 | Msa0897810:CDS | 10.0% |
| !!! | TTTGATATTAATTTTATACT+AGG | + | chr6_1:90197914-90197933 | None:intergenic | 10.0% |
| !!! | AATTTTTTCTAATGATTATT+TGG | + | chr6_1:90198188-90198207 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAACTAGTTG+CGG | + | chr6_1:90196859-90196878 | None:intergenic | 15.0% |
| !!! | CAACTAGTTTTTTTTTTTTT+TGG | - | chr6_1:90196859-90196878 | Msa0897810:three_prime_UTR | 15.0% |
| !!! | TAGTTTTTTTTTTTTTTGGA+AGG | - | chr6_1:90196863-90196882 | Msa0897810:three_prime_UTR | 15.0% |
| !! | CTAACAAACTATTTATAAAA+TGG | - | chr6_1:90197214-90197233 | Msa0897810:three_prime_UTR | 15.0% |
| !! | TTTACAATATAAGGATAATT+TGG | + | chr6_1:90197753-90197772 | None:intergenic | 15.0% |
| !! | TTGTATACAATAATCTATTA+AGG | - | chr6_1:90199400-90199419 | Msa0897810:five_prime_UTR | 15.0% |
| !! | ATAAATTAGTGATGAAAATT+TGG | - | chr6_1:90199430-90199449 | Msa0897810:five_prime_UTR | 15.0% |
| !! | AAATTTAGTGATTAAAGAAT+TGG | - | chr6_1:90199494-90199513 | Msa0897810:five_prime_UTR | 15.0% |
| !! | ATAGGTTATGATATATACAT+TGG | + | chr6_1:90196969-90196988 | None:intergenic | 20.0% |
| !! | ACAAAATAATTAAGGAAAAC+TGG | + | chr6_1:90197582-90197601 | None:intergenic | 20.0% |
| !! | AAAATCATGAGATTTATTGA+GGG | + | chr6_1:90197635-90197654 | None:intergenic | 20.0% |
| !!! | TTTTTTTGGTTGTACATAAA+AGG | - | chr6_1:90197782-90197801 | Msa0897810:CDS | 20.0% |
| !! | ATACTTGTATACAATAATGA+TGG | - | chr6_1:90199245-90199264 | Msa0897810:intron | 20.0% |
| !!! | AAATTTTATTGAAGGCATTA+TGG | + | chr6_1:90199354-90199373 | None:intergenic | 20.0% |
| !!! | GCTTCTTTTATTTTTCTGAT+TGG | + | chr6_1:90197050-90197069 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTCAATTAAGCT+AGG | - | chr6_1:90197080-90197099 | Msa0897810:three_prime_UTR | 25.0% |
| ! | GATAGTTATAAAGTTGCAAA+TGG | - | chr6_1:90197251-90197270 | Msa0897810:three_prime_UTR | 25.0% |
| !!! | TCCTTAATTATTTTGTTCTC+AGG | - | chr6_1:90197586-90197605 | Msa0897810:CDS | 25.0% |
| ! | ACCTGAGAACAAAATAATTA+AGG | + | chr6_1:90197590-90197609 | None:intergenic | 25.0% |
| ! | GAAAATCATGAGATTTATTG+AGG | + | chr6_1:90197636-90197655 | None:intergenic | 25.0% |
| ! | TGACAACACATTAACTTATA+TGG | + | chr6_1:90198131-90198150 | None:intergenic | 25.0% |
| ! | GATTATTTGGTTATGTTCTT+TGG | + | chr6_1:90198175-90198194 | None:intergenic | 25.0% |
| !!! | TTCTTTCTTTTTTTCTTCCT+CGG | + | chr6_1:90198765-90198784 | None:intergenic | 25.0% |
| ! | AGAAGAAAAGAAAAAGATGA+TGG | - | chr6_1:90198802-90198821 | Msa0897810:intron | 25.0% |
| ! | TCATAACAAACCACATAATT+AGG | + | chr6_1:90199145-90199164 | None:intergenic | 25.0% |
| !! | ATGCTTGCAAATTTTATTGA+AGG | + | chr6_1:90199211-90199230 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTTGCAAGCA+TGG | - | chr6_1:90199210-90199229 | Msa0897810:CDS | 25.0% |
| !! | ATGCTTGCAAATTTTATTGA+AGG | + | chr6_1:90199211-90199230 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTTGCAAGCA+TGG | - | chr6_1:90199210-90199229 | Msa0897810:CDS | 25.0% |
| ! | GCAGTTTCATAAAATTTACA+TGG | + | chr6_1:90199624-90199643 | None:intergenic | 25.0% |
| !! | CATTGTCATTGTTTTGTGAA+AGG | + | chr6_1:90196901-90196920 | None:intergenic | 30.0% |
| TTTCAATTAAGCTAGGATGA+AGG | - | chr6_1:90197087-90197106 | Msa0897810:three_prime_UTR | 30.0% | |
| ATGCGATCAAAATTGCAATT+GGG | + | chr6_1:90197439-90197458 | None:intergenic | 30.0% | |
| AATGCGATCAAAATTGCAAT+TGG | + | chr6_1:90197440-90197459 | None:intergenic | 30.0% | |
| TTTGCTTTGTAGTTAGAAGT+AGG | - | chr6_1:90197523-90197542 | Msa0897810:CDS | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr6_1:90197670-90197689 | None:intergenic | 30.0% |
| GAGTGAGAGTTTACAATATA+AGG | + | chr6_1:90197762-90197781 | None:intergenic | 30.0% | |
| !!! | GTAAACTCTCACTCTTTTTT+TGG | - | chr6_1:90197768-90197787 | Msa0897810:CDS | 30.0% |
| CAAAACAACGACATAATTAG+CGG | - | chr6_1:90197930-90197949 | Msa0897810:intron | 30.0% | |
| ACAATCAATCATGTTTGTGT+GGG | + | chr6_1:90198029-90198048 | None:intergenic | 30.0% | |
| TAGAGGTAAACACATATGTT+CGG | + | chr6_1:90198417-90198436 | None:intergenic | 30.0% | |
| TCCAAAATACATGCATACAT+AGG | - | chr6_1:90198593-90198612 | Msa0897810:intron | 30.0% | |
| ! | ACCTATGTATGCATGTATTT+TGG | + | chr6_1:90198597-90198616 | None:intergenic | 30.0% |
| AAAGATAAGATATCTGTCAC+CGG | - | chr6_1:90198647-90198666 | Msa0897810:intron | 30.0% | |
| !!! | GAACTTTTTTTTCAGCATGT+TGG | + | chr6_1:90198699-90198718 | None:intergenic | 30.0% |
| TCTTGCAATACTCATTGTAA+TGG | - | chr6_1:90198860-90198879 | Msa0897810:intron | 30.0% | |
| GATAATAACCATAACACCTT+GGG | + | chr6_1:90199090-90199109 | None:intergenic | 30.0% | |
| TAACAAACCACATAATTAGG+TGG | + | chr6_1:90199142-90199161 | None:intergenic | 30.0% | |
| ! | TATACAATAATGATGGAGCA+AGG | - | chr6_1:90199252-90199271 | Msa0897810:intron | 30.0% |
| AGTGATTAAAGAATTGGTGA+TGG | - | chr6_1:90199500-90199519 | Msa0897810:five_prime_UTR | 30.0% | |
| TTCGTATTTGTCTTCTGCTT+TGG | + | chr6_1:90197009-90197028 | None:intergenic | 35.0% | |
| TTGGTTGTACATAAAAGGTG+AGG | - | chr6_1:90197787-90197806 | Msa0897810:CDS | 35.0% | |
| TGGTTGTACATAAAAGGTGA+GGG | - | chr6_1:90197788-90197807 | Msa0897810:CDS | 35.0% | |
| ! | AGGGGTTATATGAACTTTTG+TGG | - | chr6_1:90197807-90197826 | Msa0897810:CDS | 35.0% |
| CACAATCAATCATGTTTGTG+TGG | + | chr6_1:90198030-90198049 | None:intergenic | 35.0% | |
| GTAAAGTGAGAGAAAGATAG+AGG | + | chr6_1:90198434-90198453 | None:intergenic | 35.0% | |
| AACTGTGTCTACATTATCAC+CGG | + | chr6_1:90198669-90198688 | None:intergenic | 35.0% | |
| ! | GCATGTCGTACTATTTTGTT+TGG | - | chr6_1:90198827-90198846 | Msa0897810:intron | 35.0% |
| AAGTGTGAAAAATGCACATG+TGG | - | chr6_1:90198884-90198903 | Msa0897810:intron | 35.0% | |
| TTACACTCACAACAACTCTT+TGG | + | chr6_1:90198965-90198984 | None:intergenic | 35.0% | |
| !!! | CATTGTTGGATTTTTGGTGA+AGG | + | chr6_1:90199049-90199068 | None:intergenic | 35.0% |
| ! | TGAGGACATTGTTGGATTTT+TGG | + | chr6_1:90199055-90199074 | None:intergenic | 35.0% |
| AAATCCAACAATGTCCTCAT+TGG | - | chr6_1:90199056-90199075 | Msa0897810:intron | 35.0% | |
| GGATAATAACCATAACACCT+TGG | + | chr6_1:90199091-90199110 | None:intergenic | 35.0% | |
| !! | GGGTTACAATAAGGTTGATA+TGG | + | chr6_1:90199321-90199340 | None:intergenic | 35.0% |
| !! | CATAATTAGGTGGTGGATAA+GGG | + | chr6_1:90199301-90199320 | None:intergenic | 35.0% |
| !! | ACATAATTAGGTGGTGGATA+AGG | + | chr6_1:90199133-90199152 | None:intergenic | 35.0% |
| TTATCCACCACCTAATTATG+TGG | - | chr6_1:90199132-90199151 | Msa0897810:intron | 35.0% | |
| CATAGTTCTTACTCACATGA+TGG | + | chr6_1:90199188-90199207 | None:intergenic | 35.0% | |
| TCATAACAAGCCGCATAATT+AGG | - | chr6_1:90199288-90199307 | Msa0897810:intron | 35.0% | |
| TTATCCACCACCTAATTATG+CGG | + | chr6_1:90199132-90199151 | None:intergenic | 35.0% | |
| !! | CATAATTAGGTGGTGGATAA+GGG | - | chr6_1:90199301-90199320 | Msa0897810:intron | 35.0% |
| !! | GGGTTACAATAAGGTTGATA+TGG | - | chr6_1:90199321-90199340 | Msa0897810:intron | 35.0% |
| TCATCTCAACAAGTGAGAAT+AGG | - | chr6_1:90199570-90199589 | Msa0897810:five_prime_UTR | 35.0% | |
| CATCTCAACAAGTGAGAATA+GGG | - | chr6_1:90199571-90199590 | Msa0897810:five_prime_UTR | 35.0% | |
| !! | AGTGAGAATAGGGTGTTATT+TGG | - | chr6_1:90199581-90199600 | Msa0897810:five_prime_UTR | 35.0% |
| GAATTGAGCTGGTTGTACAT+AGG | + | chr6_1:90196987-90197006 | None:intergenic | 40.0% | |
| CTTCAAAATCCGCAATATCG+AGG | + | chr6_1:90197401-90197420 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr6_1:90197666-90197685 | None:intergenic | 40.0% |
| GGTTGTACATAAAAGGTGAG+GGG | - | chr6_1:90197789-90197808 | Msa0897810:CDS | 40.0% | |
| !! | GAAGAAGCACTAGCTAAAAC+TGG | + | chr6_1:90198547-90198566 | None:intergenic | 40.0% |
| AGGTGTGACTTCAGTATCAT+TGG | - | chr6_1:90198613-90198632 | Msa0897810:intron | 40.0% | |
| GTGACTTCAGTATCATTGGA+AGG | - | chr6_1:90198617-90198636 | Msa0897810:intron | 40.0% | |
| ! | TGTGGAAGTGCAAAATGTGA+TGG | - | chr6_1:90198902-90198921 | Msa0897810:intron | 40.0% |
| GCACAACAACTCTTTGGATT+AGG | + | chr6_1:90198989-90199008 | None:intergenic | 40.0% | |
| TTGTTGGCACAACAACTCTT+TGG | + | chr6_1:90198995-90199014 | None:intergenic | 40.0% | |
| !!! | TGTTGGATTTTTGGTGAAGG+AGG | + | chr6_1:90199046-90199065 | None:intergenic | 40.0% |
| GGTGGATAAGGGTTACAATA+AGG | + | chr6_1:90199312-90199331 | None:intergenic | 40.0% | |
| CAAACCACATAATTAGGTGG+TGG | + | chr6_1:90199139-90199158 | None:intergenic | 40.0% | |
| ! | ATAATGATGGAGCAAGGTTC+AGG | - | chr6_1:90199258-90199277 | Msa0897810:intron | 40.0% |
| TAACAAGCCGCATAATTAGG+TGG | - | chr6_1:90199291-90199310 | Msa0897810:intron | 40.0% | |
| !! | GCATAATTAGGTGGTGGATA+AGG | - | chr6_1:90199300-90199319 | Msa0897810:intron | 40.0% |
| GGTGGATAAGGGTTACAATA+AGG | - | chr6_1:90199312-90199331 | Msa0897810:intron | 40.0% | |
| !! | CTTCTGCTTTGGAATTGAGC+TGG | + | chr6_1:90196998-90197017 | None:intergenic | 45.0% |
| AAAACTGCTGCTGAGGTCAA+AGG | - | chr6_1:90197303-90197322 | Msa0897810:CDS | 45.0% | |
| CAATATCGAGGTCCCAATTG+CGG | + | chr6_1:90197389-90197408 | None:intergenic | 45.0% | |
| CAATTGGGACCTCGATATTG+CGG | - | chr6_1:90197389-90197408 | Msa0897810:CDS | 45.0% | |
| GTTTGCAGCGTAACGTTAAC+TGG | - | chr6_1:90197485-90197504 | Msa0897810:CDS | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr6_1:90197667-90197686 | None:intergenic | 45.0% |
| CTGTGTCACCATTCTAAGTG+TGG | - | chr6_1:90198721-90198740 | Msa0897810:intron | 45.0% | |
| CACCATTCTAAGTGTGGAAG+AGG | - | chr6_1:90198727-90198746 | Msa0897810:intron | 45.0% | |
| CACCTCTTCCACACTTAGAA+TGG | + | chr6_1:90198732-90198751 | None:intergenic | 45.0% | |
| AGAGGTGAAGAAGAAAACCG+AGG | - | chr6_1:90198745-90198764 | Msa0897810:intron | 45.0% | |
| ! | TGTGCCAACAAGAAGTGTGA+TGG | - | chr6_1:90199004-90199023 | Msa0897810:intron | 45.0% |
| GCAACCATCACACTTCTTGT+TGG | + | chr6_1:90199011-90199030 | None:intergenic | 45.0% | |
| TTTGGTGAAGGAGGCTTCTT+AGG | + | chr6_1:90199037-90199056 | None:intergenic | 45.0% | |
| TGCACCAATGAGGACATTGT+TGG | + | chr6_1:90199063-90199082 | None:intergenic | 45.0% | |
| TGGAGCAAGGTTCAGGATTT+GGG | + | chr6_1:90199265-90199284 | None:intergenic | 45.0% | |
| ATGGAGCAAGGTTCAGGATT+TGG | + | chr6_1:90199264-90199283 | None:intergenic | 45.0% | |
| ! | CTTACTCACATGATGGAGCA+AGG | + | chr6_1:90199181-90199200 | None:intergenic | 45.0% |
| ATGGAGCAAGGTTCAGGATT+TGG | - | chr6_1:90199264-90199283 | Msa0897810:intron | 45.0% | |
| TGGAGCAAGGTTCAGGATTT+GGG | - | chr6_1:90199265-90199284 | Msa0897810:intron | 45.0% | |
| !! | AAACAAAAAAAAAATATTTA+AGG | - | chr6_1:90197553-90197572 | Msa0897810:CDS | 5.0% |
| !! | AACAAAAAAAAAATATTTAA+GGG | - | chr6_1:90197554-90197573 | Msa0897810:CDS | 5.0% |
| !! | ATATTATATATGAAAAAATT+TGG | - | chr6_1:90197865-90197884 | Msa0897810:intron | 5.0% |
| !!! | TTTTTTACTAATTTTTTTAT+AGG | - | chr6_1:90199545-90199564 | Msa0897810:five_prime_UTR | 5.0% |
| AGCACTCAAAACTGCTGCTG+AGG | - | chr6_1:90197296-90197315 | Msa0897810:CDS | 50.0% | |
| ! | TTATGGGCTGCAACCGCAAT+TGG | - | chr6_1:90197373-90197392 | Msa0897810:CDS | 50.0% |
| ! | TATGGGCTGCAACCGCAATT+GGG | - | chr6_1:90197374-90197393 | Msa0897810:CDS | 50.0% |
| GACACCACTTAAGTCTCGTG+TGG | - | chr6_1:90198095-90198114 | Msa0897810:intron | 50.0% | |
| TCGTCCACACGAGACTTAAG+TGG | + | chr6_1:90198102-90198121 | None:intergenic | 50.0% | |
| ! | TGCACATGCCCAAGGTGTTA+TGG | - | chr6_1:90199079-90199098 | Msa0897810:intron | 50.0% |
| ! | CACATGATGGAGCAAGGTTC+AGG | + | chr6_1:90199175-90199194 | None:intergenic | 50.0% |
| CAAGCCGCATAATTAGGTGG+TGG | - | chr6_1:90199294-90199313 | Msa0897810:intron | 50.0% | |
| CTTGGGCATGTGCACCAATG+AGG | + | chr6_1:90199073-90199092 | None:intergenic | 55.0% | |
| CTCATTGGTGCACATGCCCA+AGG | - | chr6_1:90199071-90199090 | Msa0897810:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 90196815 | 90199660 | 90196815 | ID=Msa0897810;Name=Msa0897810 |
| chr6_1 | mRNA | 90196815 | 90199660 | 90196815 | ID=Msa0897810-mRNA-1;Parent=Msa0897810;Name=Msa0897810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=288|1|1|1|0.5|0.33|3|465|221 |
| chr6_1 | exon | 90196815 | 90197860 | 90196815 | ID=Msa0897810-mRNA-1:exon:15385;Parent=Msa0897810-mRNA-1 |
| chr6_1 | exon | 90199151 | 90199229 | 90199151 | ID=Msa0897810-mRNA-1:exon:15384;Parent=Msa0897810-mRNA-1 |
| chr6_1 | exon | 90199367 | 90199660 | 90199367 | ID=Msa0897810-mRNA-1:exon:15383;Parent=Msa0897810-mRNA-1 |
| chr6_1 | five_prime_UTR | 90199373 | 90199660 | 90199373 | ID=Msa0897810-mRNA-1:five_prime_utr;Parent=Msa0897810-mRNA-1 |
| chr6_1 | CDS | 90199367 | 90199372 | 90199367 | ID=Msa0897810-mRNA-1:cds;Parent=Msa0897810-mRNA-1 |
| chr6_1 | CDS | 90199151 | 90199229 | 90199151 | ID=Msa0897810-mRNA-1:cds;Parent=Msa0897810-mRNA-1 |
| chr6_1 | CDS | 90197280 | 90197860 | 90197280 | ID=Msa0897810-mRNA-1:cds;Parent=Msa0897810-mRNA-1 |
| chr6_1 | three_prime_UTR | 90196815 | 90197279 | 90196815 | ID=Msa0897810-mRNA-1:three_prime_utr;Parent=Msa0897810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
