AlfalfaGEDB | Msa0966110

M. sativa cultivar zhongmu-4 / Msa0966110

KEGG: -
GO: GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0966110	XP_003620948.4	92.276	479	22	4	9	474	14	490	0.0	823

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0966110	sp\|Q8GWJ4\|OSB3_ARATH	40.000	430	165	11	62	463	71	435	7.26e-82	263

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0071760	Msa0966110	0.845147	4.868191e-59	-8.615850e-47
Msa0418980	Msa0966110	0.817957	2.518160e-52	-8.615850e-47
Msa0433060	Msa0966110	0.819465	1.145049e-52	-8.615850e-47
Msa0463820	Msa0966110	-0.813981	1.943418e-51	-8.615850e-47
Msa0524680	Msa0966110	0.817088	3.952356e-52	-8.615850e-47
Msa0550490	Msa0966110	0.829366	5.359793e-55	-8.615850e-47
Msa0925320	Msa0966110	0.859222	4.802780e-63	-8.615850e-47
Msa0966110	Msa1085850	0.801931	7.134824e-49	-8.615850e-47
Msa0966110	Msa1118790	0.809835	1.554708e-50	-8.615850e-47
Msa0966110	Msa1299690	0.804447	2.150883e-49	-8.615850e-47

Showing 1 to 10 of 11 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0966110	MtrunA17_Chr6g0488631	92.276	479	22	4	9	474	14	490	0.0	823
Msa0966110	MtrunA17_Chr1g0184811	52.459	61	27	1	406	464	248	308	2.09e-13	71.2
Msa0966110	MtrunA17_Chr1g0184811	26.244	221	153	3	42	262	84	294	8.46e-13	69.3
Msa0966110	MtrunA17_Chr1g0184811	44.118	68	36	1	335	400	248	315	3.57e-12	67.4

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0966110	AT5G44785.1	40.000	430	165	11	62	463	71	435	7.38e-83	263
Msa0966110	AT5G44785.2	40.139	431	165	11	62	463	71	437	9.57e-83	263
Msa0966110	AT4G20010.1	34.746	354	166	6	48	394	74	369	5.88e-61	204
Msa0966110	AT4G20010.1	54.745	137	58	1	332	464	232	368	2.16e-44	160
Msa0966110	AT4G20010.2	34.746	354	166	6	48	394	74	369	1.22e-60	203
Msa0966110	AT4G20010.2	54.745	137	58	1	332	464	232	368	2.52e-44	159
Msa0966110	AT1G31010.1	53.957	139	61	2	246	384	208	343	1.71e-42	154
Msa0966110	AT1G31010.1	32.154	311	143	11	52	313	52	343	1.65e-32	127
Msa0966110	AT1G31010.1	50.000	134	58	3	333	461	220	349	2.59e-29	118
Msa0966110	AT1G47720.1	55.932	59	23	2	400	455	179	237	2.91e-12	67.4

Showing 1 to 10 of 10 entries

Previous1Next

Find 156 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACTTGCATTTGGGA+GGG	0.571218	6_3:+94126433	Msa0966110:CDS
AAACAAACAAAAGATAGTAA+AGG	0.572668	6_3:+94130801	Msa0966110:CDS
AAACAAGCAAAGGACAGTAA+AGG	0.563525	6_3:+94132516	Msa0966110:CDS
AAACTGAGGAACATGACACA+AGG	0.672639	6_3:+94130145	Msa0966110:CDS
AAAGCAGCCTTCTTAACACG+AGG	0.696273	6_3:-94127458	None:intergenic
AAATCACCATGAAAGACAAG+AGG	0.625790	6_3:-94126755	None:intergenic
AACAAAGTGCAGAAACTAGC+TGG	0.482118	6_3:+94133162	Msa0966110:CDS
AACAGTACCAATTAGGTTGA+CGG	0.510399	6_3:-94126636	None:intergenic
AACATGACACAAGGAAATCC+TGG	0.500540	6_3:+94130154	Msa0966110:CDS
AAGACACCGGTGAAGGGCTA+TGG	0.531033	6_3:+94133084	Msa0966110:CDS

Showing 1 to 10 of 156 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGGGACCAAAATGAATATTA+CGG	+	chr6_3:94126406-94126425	Msa0966110:exon	30.0%
TAATGATGTTGTTCATGTTG+AGG	+	chr6_3:94126808-94126827	Msa0966110:CDS	30.0%
AATGATGTTGTTCATGTTGA+GGG	+	chr6_3:94126809-94126828	Msa0966110:CDS	30.0%
TGTAACATTGTATGGTATGA+AGG	-	chr6_3:94126914-94126933	None:intergenic	30.0%
CACTAGTAATAAATGTGTGT+TGG	+	chr6_3:94126988-94127007	Msa0966110:intron	30.0%
ACTTCTAATAAAGCCATGTT+CGG	-	chr6_3:94127163-94127182	None:intergenic	30.0%
TAAGGAGAAATCAGATATTG+AGG	+	chr6_3:94127487-94127506	Msa0966110:CDS	30.0%
AAAGTTGAGGCAATAGAAAT+TGG	+	chr6_3:94127591-94127610	Msa0966110:intron	30.0%
TGACATCACATATTGATCTA+AGG	+	chr6_3:94127776-94127795	Msa0966110:intron	30.0%
AAATTGTTTGAGAGAGCTTA+TGG	-	chr6_3:94127992-94128011	None:intergenic	30.0%

Showing 1 to 10 of 446 entries

Previous1 2 3 4 5…45Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	94126404	94133508	94126404	ID=Msa0966110;Name=Msa0966110
chr6_3	mRNA	94126404	94133508	94126404	ID=Msa0966110-mRNA-1;Parent=Msa0966110;Name=Msa0966110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=12\|1\|1\|1\|1\|1\|10\|306\|474
chr6_3	exon	94126404	94126895	94126404	ID=Msa0966110-mRNA-1:exon:17340;Parent=Msa0966110-mRNA-1
chr6_3	exon	94127422	94127512	94127422	ID=Msa0966110-mRNA-1:exon:17341;Parent=Msa0966110-mRNA-1
chr6_3	exon	94130094	94130227	94130094	ID=Msa0966110-mRNA-1:exon:17342;Parent=Msa0966110-mRNA-1
chr6_3	exon	94130346	94130385	94130346	ID=Msa0966110-mRNA-1:exon:17343;Parent=Msa0966110-mRNA-1
chr6_3	exon	94130488	94130591	94130488	ID=Msa0966110-mRNA-1:exon:17344;Parent=Msa0966110-mRNA-1
chr6_3	exon	94130675	94130822	94130675	ID=Msa0966110-mRNA-1:exon:17345;Parent=Msa0966110-mRNA-1
chr6_3	exon	94132217	94132281	94132217	ID=Msa0966110-mRNA-1:exon:17346;Parent=Msa0966110-mRNA-1
chr6_3	exon	94132390	94132537	94132390	ID=Msa0966110-mRNA-1:exon:17347;Parent=Msa0966110-mRNA-1
chr6_3	exon	94132883	94132947	94132883	ID=Msa0966110-mRNA-1:exon:17348;Parent=Msa0966110-mRNA-1
chr6_3	exon	94133053	94133508	94133053	ID=Msa0966110-mRNA-1:exon:17349;Parent=Msa0966110-mRNA-1
chr6_3	five_prime_UTR	94126404	94126415	94126404	ID=Msa0966110-mRNA-1:five_prime_utr;Parent=Msa0966110-mRNA-1
chr6_3	CDS	94126416	94126895	94126416	ID=Msa0966110-mRNA-1:cds;Parent=Msa0966110-mRNA-1
chr6_3	CDS	94127422	94127512	94127422	ID=Msa0966110-mRNA-1:cds;Parent=Msa0966110-mRNA-1
chr6_3	CDS	94130094	94130227	94130094	ID=Msa0966110-mRNA-1:cds;Parent=Msa0966110-mRNA-1
chr6_3	CDS	94130346	94130385	94130346	ID=Msa0966110-mRNA-1:cds;Parent=Msa0966110-mRNA-1
chr6_3	CDS	94130488	94130591	94130488	ID=Msa0966110-mRNA-1:cds;Parent=Msa0966110-mRNA-1
chr6_3	CDS	94130675	94130822	94130675	ID=Msa0966110-mRNA-1:cds;Parent=Msa0966110-mRNA-1
chr6_3	CDS	94132217	94132281	94132217	ID=Msa0966110-mRNA-1:cds;Parent=Msa0966110-mRNA-1
chr6_3	CDS	94132390	94132537	94132390	ID=Msa0966110-mRNA-1:cds;Parent=Msa0966110-mRNA-1
chr6_3	CDS	94132883	94132947	94132883	ID=Msa0966110-mRNA-1:cds;Parent=Msa0966110-mRNA-1
chr6_3	CDS	94133053	94133202	94133053	ID=Msa0966110-mRNA-1:cds;Parent=Msa0966110-mRNA-1
chr6_3	three_prime_UTR	94133203	94133508	94133203	ID=Msa0966110-mRNA-1:three_prime_utr;Parent=Msa0966110-mRNA-1

Gene Sequence

>Msa0966110

ATGAATATTACGGATATAAAACTACTTGCATTTGGGAGGGTTTTGGAAACTCATCGAAAGGGTTTAGAAAAAATGAACCCAATACGGCGAGTTTTACTCCTCCGTCTCCGATCCACCACCACCAACTACTCCACCGCCGCCACAACCACCATTTGCAAATCATCGAAATCCAAATTCCAAAAACCAACCGAAATCCCATTCCAACCCAAACTCGCCAACTCCGTCAACCTAATTGGTACTGTTAACAAACCTATTCACTTCCAAACTTCCACCGACGGCAACCCTTCCGCCGCCACTGTCATCACTCGCCTTGGTCATGATCCTTCTCAGTTCTTGATTCCTCTTGTCTTTCATGGTGATTTGGCTCTTACCGCGCAGTTTCATCTTAAGCTTAATGATGTTGTTCATGTTGAGGGTCAACTTTCTACTGAGGATGATGATCAAATCAAGCTTGATAAACCTCAACAATATCAGTTTCAGGTTAAGGTGCAAAGTCTTAATTTTGTTGAAGGTTATCCTCGTGTTAAGAAGGCTGCTTTAACTTCTAAGGAGAAATCAGATATTGAGGATGAAAACGAGAATGATGAAATAAAGTCATCAGAGAAGGATATCCATTCCGAGAAAACTGAGGAACATGACACAAGGAAATCCTGGAAGGATGTCATTAATAAACCCAGTCAATGGAAGGCTGTACATTCAACAAAGGAGAGTCCAAAAAATGAAGATTTTGAAAGCAAGACGGAAGCCAGTGCAAAGAAATACACCGCCTATTTGTCAAGTCCTTGGGGCGACCTTCTAGATGATCCAAAGAAGTGGTGGGATTTTCGTGATAGCAAACGCAATGGATCGGTGAATCCAAAGTACCCTGACTTCAAGCGCAAGGATGGAAATGTTTCCATCTGGCTTGACAAGGCTCCAAAGTCGGTTTTATCTAGACTGAAAGCACTGGAATTTGATACTCCGCCTGTTAAACCCAAACAAACAAAAGATAGTAAAGGTGATGAGTCCTGGAATGATTTGCTGCAAAACCCAGCTAAATGGTGGGATAATAGAGTAGACAAGAAATATGCAAGAGCTCCGGATTTCAAGCACAAAGATACTGGTTTAGGGCTGTGGCTCAGAGATTCACCAAGTTGGGTTTCATCTAGACTGAAAGAACTGGAGGTTGAAAGTACATCTGTTAAATCCAAACAAGCAAAGGACAGTAAAGGTGATGAATCCTGGAATGATTTGCTGCAAAATCCAGCTAAATGGTGGGATAATAGATTAGACAAGAAGAATCCAAAAGGACCCGATTTCAAGCACAAAGACACCGGTGAAGGGCTATGGCTTAGAGGTTCACCAAGTTGGGTGTTGCCAAAATTGCCACCGTTGAAGCCGAAACAACAAAGTGCAGAAACTAGCTGGAACCAAATATCAGCTTAA

Protein sequence

>Msa0966110

MNITDIKLLAFGRVLETHRKGLEKMNPIRRVLLLRLRSTTTNYSTAATTTICKSSKSKFQKPTEIPFQPKLANSVNLIGTVNKPIHFQTSTDGNPSAATVITRLGHDPSQFLIPLVFHGDLALTAQFHLKLNDVVHVEGQLSTEDDDQIKLDKPQQYQFQVKVQSLNFVEGYPRVKKAALTSKEKSDIEDENENDEIKSSEKDIHSEKTEEHDTRKSWKDVINKPSQWKAVHSTKESPKNEDFESKTEASAKKYTAYLSSPWGDLLDDPKKWWDFRDSKRNGSVNPKYPDFKRKDGNVSIWLDKAPKSVLSRLKALEFDTPPVKPKQTKDSKGDESWNDLLQNPAKWWDNRVDKKYARAPDFKHKDTGLGLWLRDSPSWVSSRLKELEVESTSVKSKQAKDSKGDESWNDLLQNPAKWWDNRLDKKNPKGPDFKHKDTGEGLWLRGSPSWVLPKLPPLKPKQQSAETSWNQISA*