AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0463820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463820 MtrunA17_Chr3g0114241 97.051 780 23 0 1 780 1 780 0.0 1571
Msa0463820 MtrunA17_Chr4g0020011 37.288 295 168 6 427 716 95 377 1.75e-55 195
Msa0463820 MtrunA17_Chr3g0090071 35.315 286 170 5 434 716 114 387 5.87e-49 177
Msa0463820 MtrunA17_Chr4g0039291 34.828 290 176 5 430 716 109 388 1.62e-48 176
Msa0463820 MtrunA17_Chr7g0240091 28.326 233 160 3 485 716 222 448 1.52e-24 107
Msa0463820 MtrunA17_Chr2g0320711 29.010 293 184 8 434 716 157 435 1.71e-21 98.2
Msa0463820 MtrunA17_Chr7g0245261 29.461 241 139 7 482 716 103 318 1.15e-17 85.5
Msa0463820 MtrunA17_Chr2g0318431 27.092 251 162 5 426 670 173 408 9.08e-17 84.3
Msa0463820 MtrunA17_Chr7g0245291 26.939 245 154 6 483 724 111 333 3.54e-16 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463820 AT2G40400.2 68.981 648 172 3 134 780 116 735 0.0 952
Msa0463820 AT2G40400.1 68.981 648 172 3 134 780 116 735 0.0 952
Msa0463820 AT3G56140.1 73.892 609 158 1 134 741 125 733 0.0 945
Msa0463820 AT3G56140.3 73.892 609 158 1 134 741 125 733 0.0 945
Msa0463820 AT2G40400.3 74.206 535 137 1 134 667 116 650 0.0 864
Msa0463820 AT3G56140.2 73.735 514 134 1 229 741 1 514 0.0 788
Msa0463820 AT5G12470.1 35.739 291 178 5 427 716 101 383 1.09e-51 185
Msa0463820 AT2G37860.3 26.441 295 199 7 429 716 149 432 2.72e-25 110
Msa0463820 AT2G37860.4 26.441 295 199 7 429 716 149 432 2.72e-25 110
Msa0463820 AT5G22790.1 27.778 288 195 7 434 716 154 433 6.23e-25 108
Msa0463820 AT3G08630.1 29.237 236 146 8 483 716 103 319 3.05e-21 96.3
Msa0463820 AT3G08640.1 28.287 251 157 8 483 729 106 337 1.25e-20 94.4
Msa0463820 AT5G24690.1 27.099 262 167 6 426 680 172 416 1.11e-17 87.4
Msa0463820 AT2G37860.2 23.858 197 146 2 434 629 154 347 5.82e-13 71.6
Msa0463820 AT2G37860.1 23.858 197 146 2 434 629 154 347 5.82e-13 71.6

Find 216 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGAATGAACTGTCTTTC+TGG 0.090777 3_3:-63394985 None:intergenic
TTATATTACATTGATGAATT+TGG 0.096192 3_3:-63398928 None:intergenic
TCTTCTTGATACAGGGTTTC+AGG 0.152745 3_3:+63396035 Msa0463820:intron
CGAATTGCATCAGTTGTATT+TGG 0.192343 3_3:+63396382 Msa0463820:CDS
CTTAGTTACTGTCGTGAAAA+TGG 0.222076 3_3:+63393968 Msa0463820:CDS
GAATGCTAGAGTTGTGTATT+TGG 0.273191 3_3:+63393205 Msa0463820:CDS
CATAAGATTGCAGCTTGATT+TGG 0.278656 3_3:-63398698 None:intergenic
AATGCTAGAGTTGTGTATTT+GGG 0.288954 3_3:+63393206 Msa0463820:CDS
TGTTGATAAGCGATTATCTT+TGG 0.300117 3_3:+63393310 Msa0463820:CDS
TATATTACATTGATGAATTT+GGG 0.303406 3_3:-63398927 None:intergenic
CCAAATCTGTCGTTTCCTTT+TGG 0.305738 3_3:+63394748 Msa0463820:CDS
GCCGGTTCAGGCTTCATATC+AGG 0.318344 3_3:+63394685 Msa0463820:CDS
CATAAGATAGCAGCTTGATT+TGG 0.319979 3_3:-63398614 None:intergenic
CTTCAAAAGGGAATTGATCT+TGG 0.320765 3_3:+63395857 Msa0463820:CDS
CACGGACAATCAATTCTTAC+TGG 0.323981 3_3:+63397430 Msa0463820:CDS
TTTCTCATCAACAGATCTTA+AGG 0.326958 3_3:+63394599 Msa0463820:intron
GCATATTTACAAGAAATGTT+TGG 0.329508 3_3:-63397395 None:intergenic
AGAACCCAGTGGGGACAAAT+TGG 0.330231 3_3:+63396347 Msa0463820:CDS
ATCTGCAAATCTCCGTTATC+AGG 0.331816 3_3:+63396576 Msa0463820:CDS
AGTTCTCTAATAGGACTTCT+TGG 0.338841 3_3:+63396298 Msa0463820:CDS
TGCTAGTCTTTGCAAGAACT+TGG 0.340316 3_3:-63396077 None:intergenic
AGAACTCACTCACCGTTTCC+AGG 0.340540 3_3:+63395940 Msa0463820:CDS
TTCTTGAAGAGCTGGTAAAT+AGG 0.349154 3_3:+63398814 Msa0463820:three_prime_UTR
GACGACAAGGGCGGCGGAGG+AGG 0.358045 3_3:+63393016 Msa0463820:CDS
CATATTTACAAGAAATGTTT+GGG 0.367643 3_3:-63397394 None:intergenic
ATTAGAGAACTAATGTTATC+AGG 0.372366 3_3:-63396286 None:intergenic
TGAAGCAACGGTTGTTAAAC+CGG 0.377949 3_3:+63393067 Msa0463820:CDS
ACATATGGAGCTAGAGGAAC+TGG 0.381829 3_3:+63394901 Msa0463820:CDS
CCAAAAGGAAACGACAGATT+TGG 0.382199 3_3:-63394748 None:intergenic
TATGCACCTCCAGCCGGTTC+AGG 0.382397 3_3:+63394673 Msa0463820:CDS
GGAGCCACTTAATCAGTATA+TGG 0.382755 3_3:+63393361 Msa0463820:CDS
TTTGATATGCAGATAATTGC+TGG 0.385689 3_3:+63397336 Msa0463820:intron
GCGAAAGAAGCCTGGGCATT+GGG 0.389102 3_3:-63392714 None:intergenic
ATGCATTGTATAAGACTTCA+AGG 0.390763 3_3:-63393909 None:intergenic
GATAACATTAGTTCTCTAAT+AGG 0.396181 3_3:+63396289 Msa0463820:CDS
ATCTTACAAAATATGCTTGA+TGG 0.396790 3_3:+63394832 Msa0463820:CDS
GGCCTGTGGCGAAAGAAGCC+TGG 0.397330 3_3:-63392722 None:intergenic
AGAGCTTGACTATGTTATTA+CGG 0.398518 3_3:+63396171 Msa0463820:CDS
GCTCGGGTTATGAATGCTGC+TGG 0.402906 3_3:+63395093 Msa0463820:CDS
GTCAAAGCAATTTCTGCTAC+AGG 0.405412 3_3:-63395058 None:intergenic
TTCTTTCTGCGGCGACGACA+AGG 0.406359 3_3:+63393003 Msa0463820:CDS
GCAATTTCTGCTACAGGGTC+TGG 0.409182 3_3:-63395052 None:intergenic
GTAAATAGGCACAAAGGAAT+AGG 0.413271 3_3:+63398828 Msa0463820:three_prime_UTR
GGTTCGAGATGATAAGGAAT+TGG 0.416736 3_3:+63393247 Msa0463820:CDS
CAACCGGCGAGGAGTGTTGA+TGG 0.420911 3_3:+63392950 Msa0463820:CDS
TCGGAGGTGGAAGATGAGTC+TGG 0.423468 3_3:-63392797 None:intergenic
TGTTTGTTAGTGATAATTGC+CGG 0.424960 3_3:-63396496 None:intergenic
TTGGCTTCAGGATCTTCAAA+AGG 0.426441 3_3:+63395844 Msa0463820:intron
ATTGACCTCGCACGCTCTAC+TGG 0.429541 3_3:+63398542 Msa0463820:CDS
GTTGGATTTATTTCAAGTAT+TGG 0.430933 3_3:+63396424 Msa0463820:CDS
AGATATGAGCTTGGACCAAA+AGG 0.431226 3_3:-63394763 None:intergenic
AGATTCCAATTTGTCCCCAC+TGG 0.431706 3_3:-63396352 None:intergenic
GGAGAAGATAAAGGAGAATA+CGG 0.432178 3_3:+63393037 Msa0463820:CDS
GGAAAGAGAGAGGGAAAGTG+TGG 0.432186 3_3:+63393171 Msa0463820:CDS
TTATCCATATACTGATTAAG+TGG 0.432289 3_3:-63393365 None:intergenic
TCATACTCCTGCCATCGTTC+AGG 0.432726 3_3:-63393938 None:intergenic
TCACGACAGTAACTAAGAAT+AGG 0.433080 3_3:-63393962 None:intergenic
GGCGACGACAAGGGCGGCGG+AGG 0.433973 3_3:+63393013 Msa0463820:CDS
GGCGAATGAACTGTCTTTCT+GGG 0.434604 3_3:-63394984 None:intergenic
TAGGTGAACCGTTGGCGATA+GGG 0.435940 3_3:+63393150 Msa0463820:CDS
GCCCACTAATTCCTTCTGCT+TGG 0.436484 3_3:-63394627 None:intergenic
TTGACCGGGTTGAGATTGCT+CGG 0.437015 3_3:+63395076 Msa0463820:CDS
AGTTCGTAAGTTTCTTAATC+CGG 0.437926 3_3:+63396477 Msa0463820:CDS
GCCCAGGCTTCTTTCGCCAC+AGG 0.438210 3_3:+63392720 Msa0463820:CDS
CCTCGCCGGTTGCTTCGTAC+TGG 0.441228 3_3:-63392939 None:intergenic
GGCGGAGGAGGAGAAGATAA+AGG 0.443539 3_3:+63393028 Msa0463820:CDS
TCTATCTTCTTCACCTCCTC+CGG 0.445871 3_3:-63393086 None:intergenic
GTTGTTTCCGTCGTGGTGTT+CGG 0.446693 3_3:-63392892 None:intergenic
GGTCTAAAACTCGCTGGCGT+TGG 0.455815 3_3:+63396406 Msa0463820:CDS
GCCTGATATGAAGCCTGAAC+CGG 0.457500 3_3:-63394686 None:intergenic
CTCTCTTTCCCTATCGCCAA+CGG 0.462103 3_3:-63393158 None:intergenic
CTTCTTGATACAGGGTTTCA+GGG 0.463114 3_3:+63396036 Msa0463820:intron
GGCGAAAGAAGCCTGGGCAT+TGG 0.464505 3_3:-63392715 None:intergenic
GTAGCAGAAATTGCTTTGAC+CGG 0.474834 3_3:+63395061 Msa0463820:CDS
GGTGCTAGCCATGTCACATA+TGG 0.474900 3_3:+63394886 Msa0463820:CDS
CATTGATGAATTTGGGATGT+GGG 0.481685 3_3:-63398920 None:intergenic
TACGGTGTCGGTTGAAGCAA+CGG 0.484374 3_3:+63393055 Msa0463820:CDS
GCCTGTGGCGAAAGAAGCCT+GGG 0.486642 3_3:-63392721 None:intergenic
GGTATTGTTAGCTGCGGTGA+TGG 0.488263 3_3:-63392871 None:intergenic
GCAGATAATTGCTGGGGTTG+TGG 0.489520 3_3:+63397344 Msa0463820:intron
ATTGCATCAGTTGTATTTGG+TGG 0.489742 3_3:+63396385 Msa0463820:CDS
TGGCTTCAGGATCTTCAAAA+GGG 0.490844 3_3:+63395845 Msa0463820:intron
TGCGGCGACGACAAGGGCGG+CGG 0.493291 3_3:+63393010 Msa0463820:CDS
GATTCCAATTTGTCCCCACT+GGG 0.496606 3_3:-63396351 None:intergenic
TGATCTTGGTTTAGTATCAC+CGG 0.498342 3_3:+63395871 Msa0463820:CDS
GGGTTTCAGGGAAAGATTGT+TGG 0.502306 3_3:+63396048 Msa0463820:intron
TCTTTCTGCGGCGACGACAA+GGG 0.503242 3_3:+63393004 Msa0463820:CDS
GTCCAAGCAGAAGGAATTAG+TGG 0.503501 3_3:+63394625 Msa0463820:CDS
AGTTCCGGTTCGAGATGATA+AGG 0.504021 3_3:+63393241 Msa0463820:CDS
AATACAAATTTACCTGGAAA+CGG 0.504032 3_3:-63395952 None:intergenic
TTGATATGCAGATAATTGCT+GGG 0.507089 3_3:+63397337 Msa0463820:intron
ATGCTTGATGGAGGGGCCAC+CGG 0.507280 3_3:+63394844 Msa0463820:CDS
ACAAAATATGCTTGATGGAG+GGG 0.508686 3_3:+63394837 Msa0463820:CDS
TTGAAATGCATTGTCAGGGA+TGG 0.509174 3_3:-63396323 None:intergenic
GTTCTCCAGTACGAAGCAAC+CGG 0.512381 3_3:+63392934 Msa0463820:CDS
GAAAGTAAGTCACGTGCGGC+GGG 0.513194 3_3:-63392743 None:intergenic
GTTCTCTAAATACCTGATAA+CGG 0.515162 3_3:-63396588 None:intergenic
ATAGGTGAACCGTTGGCGAT+AGG 0.517601 3_3:+63393149 Msa0463820:CDS
ACGGACAATCAATTCTTACT+GGG 0.519712 3_3:+63397431 Msa0463820:CDS
AGGAATGATAAAGTTGGTGC+AGG 0.519719 3_3:-63396238 None:intergenic
TTGGCCGCCTGAACGATGGC+AGG 0.528649 3_3:+63393931 Msa0463820:CDS
AGTGGCTCCTGAAGATCAGC+AGG 0.528866 3_3:-63393347 None:intergenic
GCTAGTCTTTGCAAGAACTT+GGG 0.533750 3_3:-63396076 None:intergenic
GAATCTGATGAAGGTGGCTC+AGG 0.534682 3_3:-63398590 None:intergenic
GAATCTGATGAAGGTGGCTC+AGG 0.534682 3_3:-63398674 None:intergenic
ATATATGATGCAACGGCGAT+AGG 0.534917 3_3:+63393131 Msa0463820:CDS
TGAAGTCTTATACAATGCAT+TGG 0.535749 3_3:+63393912 Msa0463820:CDS
ATAAGTATACAACTAAGCTA+TGG 0.537813 3_3:-63398880 None:intergenic
TAGGAAAGGAATGATAAAGT+TGG 0.537940 3_3:-63396244 None:intergenic
CAAAGACTAGCAATAGAAGA+AGG 0.538188 3_3:+63396088 Msa0463820:CDS
AATTCCTTATCATCTCGAAC+CGG 0.538956 3_3:-63393245 None:intergenic
GACTGTCATGGCAGGATGGA+TGG 0.539731 3_3:+63393881 Msa0463820:intron
AGCTTCCTTTCTTCTTTCTG+CGG 0.540180 3_3:+63392992 Msa0463820:CDS
ACATTGATGAATTTGGGATG+TGG 0.544086 3_3:-63398921 None:intergenic
TTGCTGGGGTTGTGGAGCAT+CGG 0.546344 3_3:+63397352 Msa0463820:CDS
TGAAGGTGGCTCAGGTGACT+CGG 0.549801 3_3:-63398582 None:intergenic
TGAAGGTGGCTCAGGTGACT+CGG 0.549801 3_3:-63398666 None:intergenic
CTCTAGCTCCATATGTGACA+TGG 0.550265 3_3:-63394894 None:intergenic
TGAATGCTGCTGGGCAGAGA+CGG 0.550691 3_3:+63395103 Msa0463820:CDS
AGTCACGTGCGGCGGGCCTG+TGG 0.551744 3_3:-63392736 None:intergenic
GAAAGAGAGAGGGAAAGTGT+GGG 0.552614 3_3:+63393172 Msa0463820:CDS
TTAAGGACTGTCCAAGCAGA+AGG 0.554027 3_3:+63394616 Msa0463820:CDS
GAATGCTGCTGGGCAGAGAC+GGG 0.554415 3_3:+63395104 Msa0463820:CDS
GAGACGGGATGCCCTCCCAC+AGG 0.554747 3_3:+63395119 Msa0463820:CDS
AAATTATATGCACCTCCAGC+CGG 0.558669 3_3:+63394667 Msa0463820:CDS
TTGTAAAGAATTTGCATAAG+CGG 0.562562 3_3:+63393279 Msa0463820:CDS
TGACCGGGTTGAGATTGCTC+GGG 0.562769 3_3:+63395077 Msa0463820:CDS
GATGAGATTAAAAGTGAATG+AGG 0.563793 3_3:+63398746 Msa0463820:CDS
TACAAAATATGCTTGATGGA+GGG 0.564237 3_3:+63394836 Msa0463820:CDS
TGCATTGGCCGCCTGAACGA+TGG 0.564565 3_3:+63393927 Msa0463820:CDS
CATATGGAGCTAGAGGAACT+GGG 0.567576 3_3:+63394902 Msa0463820:CDS
GGAGGAGGTGAAGAAGATAG+AGG 0.570113 3_3:+63393088 Msa0463820:CDS
AACGGTTGTTAAACCGGAGG+AGG 0.570414 3_3:+63393073 Msa0463820:CDS
AAGAAGTTCTGCAATACCTC+CGG 0.571472 3_3:-63395890 None:intergenic
CTCGGGTTATGAATGCTGCT+GGG 0.571983 3_3:+63395094 Msa0463820:CDS
TTACAAAATATGCTTGATGG+AGG 0.573219 3_3:+63394835 Msa0463820:CDS
TACTCCTGCCATCGTTCAGG+CGG 0.574643 3_3:-63393935 None:intergenic
TAGCAGAAATTGCTTTGACC+GGG 0.576460 3_3:+63395062 Msa0463820:CDS
AAGCTCATATCTATCTGCAC+AGG 0.578491 3_3:+63394774 Msa0463820:CDS
TGCTTGTGGTACTCCACTGA+AGG 0.579264 3_3:+63394003 Msa0463820:CDS
CGGAGGTGGAAGATGAGTCT+GGG 0.579331 3_3:-63392796 None:intergenic
GGTCTTTGTAACTTGCAGTC+CGG 0.579868 3_3:-63398645 None:intergenic
AAATTTGAACATACCTTCAG+TGG 0.581152 3_3:-63394016 None:intergenic
AGACAGTTCATTCGCCGTGA+GGG 0.581170 3_3:+63394991 Msa0463820:CDS
TTTGGTGGTCTAAAACTCGC+TGG 0.583586 3_3:+63396400 Msa0463820:CDS
AGGAATTAGTGGGCTAACAA+AGG 0.584204 3_3:+63394636 Msa0463820:CDS
TGAAAGTAAGTCACGTGCGG+CGG 0.586751 3_3:-63392744 None:intergenic
TGATTTGGAGAATCTGATGA+AGG 0.587198 3_3:-63398599 None:intergenic
TGATTTGGAGAATCTGATGA+AGG 0.587198 3_3:-63398683 None:intergenic
GCTATCTTATGCAACTCTAC+CGG 0.590768 3_3:+63398626 Msa0463820:CDS
TCTATCTGCACAGGCTAGAG+TGG 0.591577 3_3:+63394783 Msa0463820:CDS
GATATGAAGCCTGAACCGGC+TGG 0.591682 3_3:-63394682 None:intergenic
CGTCGCCGCAGAAAGAAGAA+AGG 0.594142 3_3:-63392997 None:intergenic
GGAATCCGTCTTGTTGCTTG+TGG 0.594184 3_3:+63393989 Msa0463820:CDS
AACGGCGATAGGTGAACCGT+TGG 0.596522 3_3:+63393142 Msa0463820:CDS
TGTGCAGATAGATATGAGCT+TGG 0.597352 3_3:-63394772 None:intergenic
CGCAATTGACTCATCAGCAT+AGG 0.597542 3_3:-63396263 None:intergenic
AAGATGAGTCTGGGAAGGTA+CGG 0.598763 3_3:-63392787 None:intergenic
GCATTTCAAAAGAACCCAGT+GGG 0.600369 3_3:+63396337 Msa0463820:CDS
TTGACTCATCAGCATAGGAA+AGG 0.600777 3_3:-63396258 None:intergenic
TCACTAACAAACAGATTGCA+AGG 0.600933 3_3:+63396506 Msa0463820:CDS
CATGTCACATATGGAGCTAG+AGG 0.602908 3_3:+63394895 Msa0463820:CDS
TTCTGCGGCGACGACAAGGG+CGG 0.603218 3_3:+63393007 Msa0463820:CDS
GGAGGTGAAGAAGATAGAGG+AGG 0.603634 3_3:+63393091 Msa0463820:CDS
CAATTCTTACTGGGGAACGC+AGG 0.606143 3_3:+63397440 Msa0463820:CDS
TCAAAGCAATTTCTGCTACA+GGG 0.606508 3_3:-63395057 None:intergenic
TTGGCGATAGGGAAAGAGAG+AGG 0.610708 3_3:+63393161 Msa0463820:CDS
GTATACAACTAAGCTATGGA+AGG 0.612490 3_3:-63398876 None:intergenic
TTGTTGATTTCTTCACAGTG+TGG 0.614872 3_3:+63396212 Msa0463820:CDS
GTCGAGGATATATGATGCAA+CGG 0.620249 3_3:+63393124 Msa0463820:CDS
TGTTAGCTGCGGTGATGGAG+AGG 0.620468 3_3:-63392866 None:intergenic
CGACGCCGTTGTTTCCGTCG+TGG 0.620705 3_3:-63392899 None:intergenic
TGGCGATAGGGAAAGAGAGA+GGG 0.621244 3_3:+63393162 Msa0463820:CDS
TTCTCAAGTTTACGTGACAA+AGG 0.623098 3_3:+63392545 Msa0463820:five_prime_UTR
AAGAAGAAAGGAAGCTCCAG+CGG 0.626670 3_3:-63392985 None:intergenic
GATAAAGGAGAATACGGTGT+CGG 0.626733 3_3:+63393043 Msa0463820:CDS
GCAGTCCAGTAGAGCGTGCG+AGG 0.627373 3_3:-63398547 None:intergenic
GCGCCATCAACACTCCTCGC+CGG 0.627563 3_3:-63392953 None:intergenic
AACAATACCGAACACCACGA+CGG 0.629518 3_3:+63392885 Msa0463820:CDS
AGTCACAACTATCAACATAC+CGG 0.634556 3_3:-63394863 None:intergenic
GAACACCACGACGGAAACAA+CGG 0.638488 3_3:+63392894 Msa0463820:CDS
TATTAGCACAGTATCAGAAG+CGG 0.643218 3_3:+63396131 Msa0463820:CDS
GGTGGAAGATGAGTCTGGGA+AGG 0.644361 3_3:-63392792 None:intergenic
TGGCCAACTAACCTGTGGGA+GGG 0.648648 3_3:-63395130 None:intergenic
TAACCCGAGCAATCTCAACC+CGG 0.649576 3_3:-63395080 None:intergenic
TCCAAGCAGAAGGAATTAGT+GGG 0.651684 3_3:+63394626 Msa0463820:CDS
ATGGCCAACTAACCTGTGGG+AGG 0.651841 3_3:-63395131 None:intergenic
ATGCTAGAGTTGTGTATTTG+GGG 0.654997 3_3:+63393207 Msa0463820:CDS
GAGCTGGTAAATAGGCACAA+AGG 0.658070 3_3:+63398822 Msa0463820:three_prime_UTR
CGGTGATGGAGAGGTTGACA+CGG 0.659005 3_3:-63392857 None:intergenic
GTTATTACGGACACTGTCAG+AGG 0.660546 3_3:+63396184 Msa0463820:CDS
GGTATGTTGATAGTTGTGAC+TGG 0.667974 3_3:+63394865 Msa0463820:CDS
GAGTACCACAAGCAACAAGA+CGG 0.670544 3_3:-63393994 None:intergenic
AAGACAGTTCATTCGCCGTG+AGG 0.674905 3_3:+63394990 Msa0463820:CDS
AGCAACGGTTGTTAAACCGG+AGG 0.682945 3_3:+63393070 Msa0463820:CDS
TGATATGCAGATAATTGCTG+GGG 0.689345 3_3:+63397338 Msa0463820:intron
GTGTTCGGTATTGTTAGCTG+CGG 0.690961 3_3:-63392877 None:intergenic
CGGACAATCAATTCTTACTG+GGG 0.691240 3_3:+63397432 Msa0463820:CDS
CACAACTATCAACATACCGG+TGG 0.692061 3_3:-63394860 None:intergenic
CAACAGGAACTTCTCCCTCA+CGG 0.692731 3_3:-63395005 None:intergenic
CGGTGAAAGTAAGTCACGTG+CGG 0.694390 3_3:-63392747 None:intergenic
ATATGGAGCTAGAGGAACTG+GGG 0.700000 3_3:+63394903 Msa0463820:CDS
TCTTGGTTTAGTATCACCGG+AGG 0.703286 3_3:+63395874 Msa0463820:CDS
CCAGTACGAAGCAACCGGCG+AGG 0.704719 3_3:+63392939 Msa0463820:CDS
ATGAAGCCTGAACCGGCTGG+AGG 0.705896 3_3:-63394679 None:intergenic
TTTGGAGAATCTGATGAAGG+TGG 0.706792 3_3:-63398596 None:intergenic
TTTGGAGAATCTGATGAAGG+TGG 0.706792 3_3:-63398680 None:intergenic
TGCATTTCAAAAGAACCCAG+TGG 0.707372 3_3:+63396336 Msa0463820:CDS
AGGAGGAAGTGATAACGTCG+AGG 0.707415 3_3:+63393108 Msa0463820:CDS
TGCTAGAGTTGTGTATTTGG+GGG 0.710856 3_3:+63393208 Msa0463820:CDS
ATTTCTGCTACAGGGTCTGG+CGG 0.715985 3_3:-63395049 None:intergenic
TGATGGAGAGGTTGACACGG+CGG 0.731595 3_3:-63392854 None:intergenic
TGAGTGAGTTCTGAAAGCAG+AGG 0.753513 3_3:-63395929 None:intergenic
TACGTCATCTCAATTCACTG+TGG 0.758204 3_3:+63392580 Msa0463820:five_prime_UTR
CATTTCAAAAGAACCCAGTG+GGG 0.761830 3_3:+63396338 Msa0463820:CDS
CGGCACGTGAGACAGTTACG+CGG 0.785215 3_3:-63392767 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAATAAAATGAAGAA+AGG + chr3_3:63392640-63392659 Msa0463820:five_prime_UTR 10.0%
!!! ATTTTTCAAATCTAATTTTT+TGG + chr3_3:63398500-63398519 Msa0463820:intron 10.0%
!!! TCATGATAATTAAATTGTTT+TGG - chr3_3:63393450-63393469 None:intergenic 15.0%
!! AATTTAATTATCATGATAAG+CGG + chr3_3:63393454-63393473 Msa0463820:intron 15.0%
!!! TTAAAATTTTAAAATCCTTG+TGG - chr3_3:63394219-63394238 None:intergenic 15.0%
!!! TTCAATGTTTTAAATTTGTT+GGG + chr3_3:63394446-63394465 Msa0463820:intron 15.0%
!! CAGAAAAAATAATTCATAAA+AGG - chr3_3:63395302-63395321 None:intergenic 15.0%
!!! TTATGAATTATTTTTTCTGT+AGG + chr3_3:63395303-63395322 Msa0463820:intron 15.0%
!! GGTTATTTAAATTTAATACA+TGG + chr3_3:63397976-63397995 Msa0463820:intron 15.0%
!! ATATACAAATTTCTCATTAA+AGG + chr3_3:63398233-63398252 Msa0463820:intron 15.0%
!! TATATTACATTGATGAATTT+GGG - chr3_3:63398930-63398949 None:intergenic 15.0%
!! TTATATTACATTGATGAATT+TGG - chr3_3:63398931-63398950 None:intergenic 15.0%
!! ACTTAATAAGCACTTAATTA+AGG - chr3_3:63393506-63393525 None:intergenic 20.0%
!! TTGTTCATGAAAAAAACTTA+TGG - chr3_3:63393547-63393566 None:intergenic 20.0%
!!! AATAAGAGCATAACAAAAAT+CGG - chr3_3:63393700-63393719 None:intergenic 20.0%
!!! AATTTATGTTTCTTTTACCT+TGG + chr3_3:63393776-63393795 Msa0463820:intron 20.0%
!! GGTCTATTATTTAATCTTTA+TGG - chr3_3:63394198-63394217 None:intergenic 20.0%
!! AAAAACCTAATCTATGAATT+AGG + chr3_3:63394260-63394279 Msa0463820:intron 20.0%
!! AAAAACCTAATTCATAGATT+AGG - chr3_3:63394268-63394287 None:intergenic 20.0%
!!! TAGGTTTTTCATAATATTTG+AGG + chr3_3:63394279-63394298 Msa0463820:intron 20.0%
!!! GTTCAATGTTTTAAATTTGT+TGG + chr3_3:63394445-63394464 Msa0463820:intron 20.0%
!!! TTTTTCTTTTCCTTAAATGT+TGG + chr3_3:63395466-63395485 Msa0463820:intron 20.0%
!!! AACATGATTATATTTCCTTT+TGG + chr3_3:63395825-63395844 Msa0463820:intron 20.0%
!! TCAAAAAATACAAATTTACC+TGG - chr3_3:63395961-63395980 None:intergenic 20.0%
!!! GCATTTTTCCTTTAAATTAT+TGG - chr3_3:63396796-63396815 None:intergenic 20.0%
!! TATTATTGCTGAATTTAATG+TGG + chr3_3:63396855-63396874 Msa0463820:intron 20.0%
!! ATTATTGCTGAATTTAATGT+GGG + chr3_3:63396856-63396875 Msa0463820:intron 20.0%
!!! CTAAGACACTTTTTATTATT+GGG - chr3_3:63396958-63396977 None:intergenic 20.0%
!!! TCTAAGACACTTTTTATTAT+TGG - chr3_3:63396959-63396978 None:intergenic 20.0%
!! CATATTTACAAGAAATGTTT+GGG - chr3_3:63397397-63397416 None:intergenic 20.0%
!!! GAATTTTGAAAATGATCAAA+AGG - chr3_3:63397498-63397517 None:intergenic 20.0%
!!! TAATTTGTTGTACTTTACAT+TGG - chr3_3:63397848-63397867 None:intergenic 20.0%
!! AAGTACAACAAATTATACAT+TGG + chr3_3:63397853-63397872 Msa0463820:intron 20.0%
!! AGTACAACAAATTATACATT+GGG + chr3_3:63397854-63397873 Msa0463820:intron 20.0%
!!! TGCTTACTATTAATTTTTCA+AGG + chr3_3:63398118-63398137 Msa0463820:intron 20.0%
!! ATGAGAAATTTGTATATGAA+AGG - chr3_3:63398230-63398249 None:intergenic 20.0%
!! CTCTAAGTTAAAATTTAACA+TGG - chr3_3:63398259-63398278 None:intergenic 20.0%
!! AAATTACTTATCAAACATAC+AGG - chr3_3:63398374-63398393 None:intergenic 20.0%
! TTGTAAAGAATTTGCATAAG+CGG + chr3_3:63393279-63393298 Msa0463820:CDS 25.0%
!! TTATCCATATACTGATTAAG+TGG - chr3_3:63393368-63393387 None:intergenic 25.0%
! ACAAAAATCGGAAATTATCA+TGG - chr3_3:63393688-63393707 None:intergenic 25.0%
!!! CATTATCTTCTGAAATTTTC+TGG + chr3_3:63394071-63394090 Msa0463820:intron 25.0%
! AGATTAAATAATAGACCACA+AGG + chr3_3:63394201-63394220 Msa0463820:intron 25.0%
! AGATCAGATAATATGTTGAA+AGG + chr3_3:63394379-63394398 Msa0463820:intron 25.0%
! GATCAGATAATATGTTGAAA+GGG + chr3_3:63394380-63394399 Msa0463820:intron 25.0%
!! AATTTAAAACATTGAACGCA+AGG - chr3_3:63394442-63394461 None:intergenic 25.0%
!! ATCAAGCATATTTTGTAAGA+TGG - chr3_3:63394833-63394852 None:intergenic 25.0%
! ATCTTACAAAATATGCTTGA+TGG + chr3_3:63394832-63394851 Msa0463820:CDS 25.0%
!! AATTTTCTTGATATTCTTGC+AGG - chr3_3:63394931-63394950 None:intergenic 25.0%
!! CAATTTTGTATCACCAAAAT+GGG - chr3_3:63395242-63395261 None:intergenic 25.0%
!! TCAATTTTGTATCACCAAAA+TGG - chr3_3:63395243-63395262 None:intergenic 25.0%
! AAACAGAAACATCAAGTAAA+AGG - chr3_3:63395361-63395380 None:intergenic 25.0%
!!! TTTTACTTGATGTTTCTGTT+TGG + chr3_3:63395360-63395379 Msa0463820:intron 25.0%
!!! TACATTGATTCCAAGTATTT+AGG + chr3_3:63395632-63395651 Msa0463820:intron 25.0%
!!! ACATTGATTCCAAGTATTTA+GGG + chr3_3:63395633-63395652 Msa0463820:intron 25.0%
! CTAAAGGATGATTACATTAA+AGG - chr3_3:63395775-63395794 None:intergenic 25.0%
! AATACAAATTTACCTGGAAA+CGG - chr3_3:63395955-63395974 None:intergenic 25.0%
! ATTAGAGAACTAATGTTATC+AGG - chr3_3:63396289-63396308 None:intergenic 25.0%
!! GATAACATTAGTTCTCTAAT+AGG + chr3_3:63396289-63396308 Msa0463820:CDS 25.0%
!! GTTGGATTTATTTCAAGTAT+TGG + chr3_3:63396424-63396443 Msa0463820:CDS 25.0%
! AAAAAGACGTAAATGAAGAT+TGG + chr3_3:63396643-63396662 Msa0463820:intron 25.0%
! TGTGTCAATAATCATATACT+GGG - chr3_3:63396670-63396689 None:intergenic 25.0%
!!! CAACTAGTTTTTAAAGATAC+AGG - chr3_3:63396753-63396772 None:intergenic 25.0%
!! GTATCTTTAAAAACTAGTTG+TGG + chr3_3:63396753-63396772 Msa0463820:intron 25.0%
! ATGACTCACCAATAATTTAA+AGG + chr3_3:63396785-63396804 Msa0463820:intron 25.0%
!! ATTTGAGGATATTTTCTTTC+TGG + chr3_3:63397188-63397207 Msa0463820:intron 25.0%
! AACTTCAGTATTAATACAGA+AGG - chr3_3:63397308-63397327 None:intergenic 25.0%
! GCATATTTACAAGAAATGTT+TGG - chr3_3:63397398-63397417 None:intergenic 25.0%
!! ATATGCTATCTTTTGTATCA+CGG + chr3_3:63397412-63397431 Msa0463820:CDS 25.0%
!! TGTTTGAACCCTATAATTTT+CGG + chr3_3:63397554-63397573 Msa0463820:intron 25.0%
! CTTGATATCCGAAAATTATA+GGG - chr3_3:63397565-63397584 None:intergenic 25.0%
! ACTTGATATCCGAAAATTAT+AGG - chr3_3:63397566-63397585 None:intergenic 25.0%
!!! TTTAGTTTTGTGATAGAAAG+AGG + chr3_3:63397715-63397734 Msa0463820:intron 25.0%
!!! TTAGTTTTGTGATAGAAAGA+GGG + chr3_3:63397716-63397735 Msa0463820:intron 25.0%
! GTAGTATGTGAACTTAATAT+TGG + chr3_3:63397761-63397780 Msa0463820:intron 25.0%
! TATGTGAACTTAATATTGGA+AGG + chr3_3:63397765-63397784 Msa0463820:intron 25.0%
! ATGTGAACTTAATATTGGAA+GGG + chr3_3:63397766-63397785 Msa0463820:intron 25.0%
! GTACAACAAATTATACATTG+GGG + chr3_3:63397855-63397874 Msa0463820:intron 25.0%
!!! GTGAAGATTATTTTTTCACT+TGG + chr3_3:63397879-63397898 Msa0463820:intron 25.0%
! GTTAAAGAAGGATTCAAAAA+TGG - chr3_3:63397910-63397929 None:intergenic 25.0%
! ATTAAGGCAATTGTTAAAGA+AGG - chr3_3:63397922-63397941 None:intergenic 25.0%
! TTCTTTAACAATTGCCTTAA+TGG + chr3_3:63397921-63397940 Msa0463820:intron 25.0%
! ATCCTTAAAAAGTGATTTAG+AGG + chr3_3:63398061-63398080 Msa0463820:intron 25.0%
!!! TACCTCTAAATCACTTTTTA+AGG - chr3_3:63398066-63398085 None:intergenic 25.0%
! ATTAAATATTCCCAACTTCA+GGG + chr3_3:63398164-63398183 Msa0463820:intron 25.0%
!! AATAGATGCTCTAAGTTAAA+AGG - chr3_3:63398267-63398286 None:intergenic 25.0%
! TTGACTTTCCTTTAATTGAA+GGG - chr3_3:63398314-63398333 None:intergenic 25.0%
!! ATTGACTTTCCTTTAATTGA+AGG - chr3_3:63398315-63398334 None:intergenic 25.0%
! AATTACGACAATAAAGTTGA+AGG + chr3_3:63398332-63398351 Msa0463820:intron 25.0%
! ATTACGACAATAAAGTTGAA+GGG + chr3_3:63398333-63398352 Msa0463820:intron 25.0%
! AAACCAAGATAAGCATAATT+TGG + chr3_3:63398430-63398449 Msa0463820:intron 25.0%
! AATCCAAATTATGCTTATCT+TGG - chr3_3:63398436-63398455 None:intergenic 25.0%
!!! TTTTTTTTTTCTTGAAGAGC+TGG + chr3_3:63398806-63398825 Msa0463820:three_prime_UTR 25.0%
! ATAAGTATACAACTAAGCTA+TGG - chr3_3:63398883-63398902 None:intergenic 25.0%
GCCATGAAAAACATAAACAT+GGG + chr3_3:63392602-63392621 Msa0463820:five_prime_UTR 30.0%
! TCCCATGTTTATGTTTTTCA+TGG - chr3_3:63392606-63392625 None:intergenic 30.0%
!!! TTCATTTTTTCTCTTCAACG+GGG - chr3_3:63392693-63392712 None:intergenic 30.0%
!!! CTTCATTTTTTCTCTTCAAC+GGG - chr3_3:63392694-63392713 None:intergenic 30.0%
!!! GCTTCATTTTTTCTCTTCAA+CGG - chr3_3:63392695-63392714 None:intergenic 30.0%
AATGCTAGAGTTGTGTATTT+GGG + chr3_3:63393206-63393225 Msa0463820:CDS 30.0%
! TGTTGATAAGCGATTATCTT+TGG + chr3_3:63393310-63393329 Msa0463820:CDS 30.0%
AAGAGCTTATTGAAATACAC+TGG + chr3_3:63393572-63393591 Msa0463820:intron 30.0%
CAATAGATAAATAGCAACCA+AGG - chr3_3:63393796-63393815 None:intergenic 30.0%
!! CTTGGTTGCTATTTATCTAT+TGG + chr3_3:63393794-63393813 Msa0463820:intron 30.0%
TCTAGCAATGACAAAAATAC+AGG - chr3_3:63393822-63393841 None:intergenic 30.0%
TAAGATAAACTTGACTGTCA+TGG + chr3_3:63393869-63393888 Msa0463820:intron 30.0%
ATGCATTGTATAAGACTTCA+AGG - chr3_3:63393912-63393931 None:intergenic 30.0%
! TGAAGTCTTATACAATGCAT+TGG + chr3_3:63393912-63393931 Msa0463820:CDS 30.0%
AAATTTGAACATACCTTCAG+TGG - chr3_3:63394019-63394038 None:intergenic 30.0%
!!! TATCTTCTGAAATTTTCTGG+TGG + chr3_3:63394074-63394093 Msa0463820:intron 30.0%
TGACTTACCCTAGATTAAAA+TGG + chr3_3:63394159-63394178 Msa0463820:intron 30.0%
!! GTGCTTACCATTTTAATCTA+GGG - chr3_3:63394169-63394188 None:intergenic 30.0%
!! AGTGCTTACCATTTTAATCT+AGG - chr3_3:63394170-63394189 None:intergenic 30.0%
AGATTAAAATGGTAAGCACT+TGG + chr3_3:63394170-63394189 Msa0463820:intron 30.0%
! TTCACCCTTTTGTTAAATTC+GGG - chr3_3:63394307-63394326 None:intergenic 30.0%
! GTTCACCCTTTTGTTAAATT+CGG - chr3_3:63394308-63394327 None:intergenic 30.0%
! CAAAAGGGTGAACATAATTT+TGG + chr3_3:63394315-63394334 Msa0463820:intron 30.0%
GATATTTACCATACTGCATA+AGG - chr3_3:63394348-63394367 None:intergenic 30.0%
ATCTTTGTATGACTTGATCT+AGG - chr3_3:63394559-63394578 None:intergenic 30.0%
TTTCTCATCAACAGATCTTA+AGG + chr3_3:63394599-63394618 Msa0463820:intron 30.0%
! CATATTTTGTAAGATGGTCT+GGG - chr3_3:63394827-63394846 None:intergenic 30.0%
TTACAAAATATGCTTGATGG+AGG + chr3_3:63394835-63394854 Msa0463820:CDS 30.0%
TACAAAATATGCTTGATGGA+GGG + chr3_3:63394836-63394855 Msa0463820:CDS 30.0%
AAGCTAATAAGTGAACGAAA+TGG - chr3_3:63395153-63395172 None:intergenic 30.0%
TAAAGGGCTTAAATTTGGAA+GGG - chr3_3:63395206-63395225 None:intergenic 30.0%
ATAAAGGGCTTAAATTTGGA+AGG - chr3_3:63395207-63395226 None:intergenic 30.0%
TTCTGTAGGCAATATAACTT+TGG + chr3_3:63395317-63395336 Msa0463820:intron 30.0%
AATCTCACTTCCAACATTTA+AGG - chr3_3:63395479-63395498 None:intergenic 30.0%
GCACAACAATATATGATCTA+AGG + chr3_3:63395503-63395522 Msa0463820:intron 30.0%
CAATATATGATCTAAGGACT+TGG + chr3_3:63395509-63395528 Msa0463820:intron 30.0%
! GACTTGGACTTTAAACTTTT+GGG + chr3_3:63395525-63395544 Msa0463820:intron 30.0%
!! CATTGATTCCAAGTATTTAG+GGG + chr3_3:63395634-63395653 Msa0463820:intron 30.0%
! ATTGATTCCAAGTATTTAGG+GGG + chr3_3:63395635-63395654 Msa0463820:intron 30.0%
AATTATACCCCCTAAATACT+TGG - chr3_3:63395645-63395664 None:intergenic 30.0%
! CAGTGGTAACTAGTTTAAAT+TGG + chr3_3:63395675-63395694 Msa0463820:intron 30.0%
AAATCTGATGATTAGGTAGT+TGG + chr3_3:63395703-63395722 Msa0463820:intron 30.0%
AATCTGATGATTAGGTAGTT+GGG + chr3_3:63395704-63395723 Msa0463820:intron 30.0%
AATGTAATCATCCTTTAGAC+AGG + chr3_3:63395777-63395796 Msa0463820:intron 30.0%
!!! TTATATTTCCTTTTGGCTTC+AGG + chr3_3:63395832-63395851 Msa0463820:intron 30.0%
TGAGATTATTTCATCACTCT+CGG + chr3_3:63396006-63396025 Msa0463820:intron 30.0%
AGAGCTTGACTATGTTATTA+CGG + chr3_3:63396171-63396190 Msa0463820:CDS 30.0%
TAGGAAAGGAATGATAAAGT+TGG - chr3_3:63396247-63396266 None:intergenic 30.0%
!!! TCTTTTGAAATGCATTGTCA+GGG - chr3_3:63396330-63396349 None:intergenic 30.0%
!!! TTCTTTTGAAATGCATTGTC+AGG - chr3_3:63396331-63396350 None:intergenic 30.0%
AGTTCGTAAGTTTCTTAATC+CGG + chr3_3:63396477-63396496 Msa0463820:CDS 30.0%
! TGTTTGTTAGTGATAATTGC+CGG - chr3_3:63396499-63396518 None:intergenic 30.0%
!!! GTTGTTTATGCACTTTTTCT+TGG + chr3_3:63396550-63396569 Msa0463820:CDS 30.0%
GTTCTCTAAATACCTGATAA+CGG - chr3_3:63396591-63396610 None:intergenic 30.0%
CTGTGTCAATAATCATATAC+TGG - chr3_3:63396671-63396690 None:intergenic 30.0%
CAGTATATGATTATTGACAC+AGG + chr3_3:63396669-63396688 Msa0463820:intron 30.0%
! ACAGGACAAATTTTGCAATT+TGG + chr3_3:63396687-63396706 Msa0463820:intron 30.0%
AGTGTATGTTAAAAAGAGTG+TGG - chr3_3:63396836-63396855 None:intergenic 30.0%
GTAAATGAGTCTCACAAATA+AGG - chr3_3:63396908-63396927 None:intergenic 30.0%
GCAACCAAAAATTCCAATTT+AGG + chr3_3:63397271-63397290 Msa0463820:intron 30.0%
! CAGACCTAAATTGGAATTTT+TGG - chr3_3:63397278-63397297 None:intergenic 30.0%
TTTGATATGCAGATAATTGC+TGG + chr3_3:63397336-63397355 Msa0463820:intron 30.0%
TTGATATGCAGATAATTGCT+GGG + chr3_3:63397337-63397356 Msa0463820:intron 30.0%
TTATAGGGTTCAAACACAAT+CGG - chr3_3:63397550-63397569 None:intergenic 30.0%
CGTTCATATGAAAATGTGTA+TGG + chr3_3:63397637-63397656 Msa0463820:intron 30.0%
TCATATGAAAATGTGTATGG+TGG + chr3_3:63397640-63397659 Msa0463820:intron 30.0%
!!! TAGTTTTGTGATAGAAAGAG+GGG + chr3_3:63397717-63397736 Msa0463820:intron 30.0%
ATTCCATAACAAGATCTCTT+AGG - chr3_3:63397808-63397827 None:intergenic 30.0%
TTTATCTTCGGTTTCAACAT+AGG + chr3_3:63397955-63397974 Msa0463820:intron 30.0%
CATTAAATATTCCCAACTTC+AGG + chr3_3:63398163-63398182 Msa0463820:intron 30.0%
TATATGAAAGGAGATAGTGT+TGG - chr3_3:63398218-63398237 None:intergenic 30.0%
ATCTATTCCCCTTCAATTAA+AGG + chr3_3:63398303-63398322 Msa0463820:intron 30.0%
TGACTTTCCTTTAATTGAAG+GGG - chr3_3:63398313-63398332 None:intergenic 30.0%
CAAAACAATTCTCTCTTATG+AGG - chr3_3:63398410-63398429 None:intergenic 30.0%
GATGAGATTAAAAGTGAATG+AGG + chr3_3:63398746-63398765 Msa0463820:CDS 30.0%
TTACAACAAAAATGTCGCAA+GGG - chr3_3:63398780-63398799 None:intergenic 30.0%
ATTACAACAAAAATGTCGCA+AGG - chr3_3:63398781-63398800 None:intergenic 30.0%
TTCTCAAGTTTACGTGACAA+AGG + chr3_3:63392545-63392564 Msa0463820:five_prime_UTR 35.0%
GGCCATGAAAAACATAAACA+TGG + chr3_3:63392601-63392620 Msa0463820:five_prime_UTR 35.0%
!!! AATTGTCGGAGTTTTTGGTT+CGG - chr3_3:63392819-63392838 None:intergenic 35.0%
GGAGAAGATAAAGGAGAATA+CGG + chr3_3:63393037-63393056 Msa0463820:CDS 35.0%
GAATGCTAGAGTTGTGTATT+TGG + chr3_3:63393205-63393224 Msa0463820:CDS 35.0%
ATGCTAGAGTTGTGTATTTG+GGG + chr3_3:63393207-63393226 Msa0463820:CDS 35.0%
AATTCCTTATCATCTCGAAC+CGG - chr3_3:63393248-63393267 None:intergenic 35.0%
CACTTAATTAAGGCTCTTGT+TGG - chr3_3:63393496-63393515 None:intergenic 35.0%
AATACACTGGAAAGAGCTTA+TGG + chr3_3:63393585-63393604 Msa0463820:intron 35.0%
TCACGACAGTAACTAAGAAT+AGG - chr3_3:63393965-63393984 None:intergenic 35.0%
CTTAGTTACTGTCGTGAAAA+TGG + chr3_3:63393968-63393987 Msa0463820:CDS 35.0%
!!! TTTTCTGGTGGTGGTTAATT+AGG + chr3_3:63394086-63394105 Msa0463820:intron 35.0%
AGGTTCCCGAATTTAACAAA+AGG + chr3_3:63394299-63394318 Msa0463820:intron 35.0%
GGTTCCCGAATTTAACAAAA+GGG + chr3_3:63394300-63394319 Msa0463820:intron 35.0%
TATGTTGAAAGGGTGAATGA+TGG + chr3_3:63394390-63394409 Msa0463820:intron 35.0%
TGAATGATGGCAAGAGAATT+AGG + chr3_3:63394403-63394422 Msa0463820:intron 35.0%
! GCATATTTTGTAAGATGGTC+TGG - chr3_3:63394828-63394847 None:intergenic 35.0%
ACAAAATATGCTTGATGGAG+GGG + chr3_3:63394837-63394856 Msa0463820:CDS 35.0%
AGTCACAACTATCAACATAC+CGG - chr3_3:63394866-63394885 None:intergenic 35.0%
!!! TTCCTGTTGCTGATTTTTTG+TGG + chr3_3:63395019-63395038 Msa0463820:CDS 35.0%
TACCACAAAAAATCAGCAAC+AGG - chr3_3:63395024-63395043 None:intergenic 35.0%
TCAAAGCAATTTCTGCTACA+GGG - chr3_3:63395060-63395079 None:intergenic 35.0%
AAAGGGCTTAAATTTGGAAG+GGG - chr3_3:63395205-63395224 None:intergenic 35.0%
GCACATAAAGGGCTTAAATT+TGG - chr3_3:63395211-63395230 None:intergenic 35.0%
TGGTGAAATGTTAATTGACG+TGG + chr3_3:63395380-63395399 Msa0463820:intron 35.0%
! GGACTTGGACTTTAAACTTT+TGG + chr3_3:63395524-63395543 Msa0463820:intron 35.0%
!! TGGACTTTAAACTTTTGGGA+TGG + chr3_3:63395529-63395548 Msa0463820:intron 35.0%
!!! GGACTTTAAACTTTTGGGAT+GGG + chr3_3:63395530-63395549 Msa0463820:intron 35.0%
GGTTGCAAAATCTGATGATT+AGG + chr3_3:63395696-63395715 Msa0463820:intron 35.0%
TAATCATCCTTTAGACAGGA+TGG + chr3_3:63395781-63395800 Msa0463820:intron 35.0%
CTTCAAAAGGGAATTGATCT+TGG + chr3_3:63395857-63395876 Msa0463820:CDS 35.0%
TGATCTTGGTTTAGTATCAC+CGG + chr3_3:63395871-63395890 Msa0463820:CDS 35.0%
CAAAGACTAGCAATAGAAGA+AGG + chr3_3:63396088-63396107 Msa0463820:CDS 35.0%
TATTAGCACAGTATCAGAAG+CGG + chr3_3:63396131-63396150 Msa0463820:CDS 35.0%
!! TTGTTGATTTCTTCACAGTG+TGG + chr3_3:63396212-63396231 Msa0463820:CDS 35.0%
AGTTCTCTAATAGGACTTCT+TGG + chr3_3:63396298-63396317 Msa0463820:CDS 35.0%
CGAATTGCATCAGTTGTATT+TGG + chr3_3:63396382-63396401 Msa0463820:CDS 35.0%
ATTGCATCAGTTGTATTTGG+TGG + chr3_3:63396385-63396404 Msa0463820:CDS 35.0%
TCACTAACAAACAGATTGCA+AGG + chr3_3:63396506-63396525 Msa0463820:CDS 35.0%
GTATGTTGACATTTGAAAGC+AGG + chr3_3:63396718-63396737 Msa0463820:intron 35.0%
TGTGAGACTCATTTACAAAG+TGG + chr3_3:63396912-63396931 Msa0463820:intron 35.0%
TTGCAACTTACAATCCTTCA+GGG + chr3_3:63397067-63397086 Msa0463820:intron 35.0%
GTGCAGATGAAGAAATAGAA+AGG - chr3_3:63397150-63397169 None:intergenic 35.0%
TGATATGCAGATAATTGCTG+GGG + chr3_3:63397338-63397357 Msa0463820:intron 35.0%
ACGGACAATCAATTCTTACT+GGG + chr3_3:63397431-63397450 Msa0463820:CDS 35.0%
TGAACGCTTGATTGTGAAAT+TGG - chr3_3:63397623-63397642 None:intergenic 35.0%
!! AGATAGTGTTGGTGAAATAC+GGG - chr3_3:63398207-63398226 None:intergenic 35.0%
!! GAGATAGTGTTGGTGAAATA+CGG - chr3_3:63398208-63398227 None:intergenic 35.0%
! TGATTTGGAGAATCTGATGA+AGG - chr3_3:63398602-63398621 None:intergenic 35.0%
CATAAGATAGCAGCTTGATT+TGG - chr3_3:63398617-63398636 None:intergenic 35.0%
! TGATTTGGAGAATCTGATGA+AGG - chr3_3:63398602-63398621 None:intergenic 35.0%
CATAAGATTGCAGCTTGATT+TGG - chr3_3:63398701-63398720 None:intergenic 35.0%
! ACTTTTAATCTCATCGATGC+TGG - chr3_3:63398741-63398760 None:intergenic 35.0%
TACAACAAAAATGTCGCAAG+GGG - chr3_3:63398779-63398798 None:intergenic 35.0%
TTCTTGAAGAGCTGGTAAAT+AGG + chr3_3:63398814-63398833 Msa0463820:three_prime_UTR 35.0%
GTAAATAGGCACAAAGGAAT+AGG + chr3_3:63398828-63398847 Msa0463820:three_prime_UTR 35.0%
GTATACAACTAAGCTATGGA+AGG - chr3_3:63398879-63398898 None:intergenic 35.0%
! CATTGATGAATTTGGGATGT+GGG - chr3_3:63398923-63398942 None:intergenic 35.0%
! ACATTGATGAATTTGGGATG+TGG - chr3_3:63398924-63398943 None:intergenic 35.0%
TACGTCATCTCAATTCACTG+TGG + chr3_3:63392580-63392599 Msa0463820:five_prime_UTR 40.0%
! TGCGAAATTGTCGGAGTTTT+TGG - chr3_3:63392824-63392843 None:intergenic 40.0%
AGCTTCCTTTCTTCTTTCTG+CGG + chr3_3:63392992-63393011 Msa0463820:CDS 40.0%
GATAAAGGAGAATACGGTGT+CGG + chr3_3:63393043-63393062 Msa0463820:CDS 40.0%
TGAAGCAACGGTTGTTAAAC+CGG + chr3_3:63393067-63393086 Msa0463820:CDS 40.0%
GTCGAGGATATATGATGCAA+CGG + chr3_3:63393124-63393143 Msa0463820:CDS 40.0%
ATATATGATGCAACGGCGAT+AGG + chr3_3:63393131-63393150 Msa0463820:CDS 40.0%
TGCTAGAGTTGTGTATTTGG+GGG + chr3_3:63393208-63393227 Msa0463820:CDS 40.0%
GGTTCGAGATGATAAGGAAT+TGG + chr3_3:63393247-63393266 Msa0463820:CDS 40.0%
GGAGCCACTTAATCAGTATA+TGG + chr3_3:63393361-63393380 Msa0463820:CDS 40.0%
ATAAACTTGACTGTCATGGC+AGG + chr3_3:63393873-63393892 Msa0463820:intron 40.0%
!!! CTTCTGAAATTTTCTGGTGG+TGG + chr3_3:63394077-63394096 Msa0463820:intron 40.0%
GAAACTTGCCTTATGCAGTA+TGG + chr3_3:63394337-63394356 Msa0463820:intron 40.0%
!!! GGGTTTTAGACAGAGTTGTA+TGG + chr3_3:63394466-63394485 Msa0463820:intron 40.0%
TCCAAGCAGAAGGAATTAGT+GGG + chr3_3:63394626-63394645 Msa0463820:CDS 40.0%
!! AGGAATTAGTGGGCTAACAA+AGG + chr3_3:63394636-63394655 Msa0463820:CDS 40.0%
AAATTATATGCACCTCCAGC+CGG + chr3_3:63394667-63394686 Msa0463820:CDS 40.0%
CCAAAAGGAAACGACAGATT+TGG - chr3_3:63394751-63394770 None:intergenic 40.0%
!! CCAAATCTGTCGTTTCCTTT+TGG + chr3_3:63394748-63394767 Msa0463820:CDS 40.0%
AGATATGAGCTTGGACCAAA+AGG - chr3_3:63394766-63394785 None:intergenic 40.0%
TGTGCAGATAGATATGAGCT+TGG - chr3_3:63394775-63394794 None:intergenic 40.0%
AAGCTCATATCTATCTGCAC+AGG + chr3_3:63394774-63394793 Msa0463820:CDS 40.0%
!! GGTATGTTGATAGTTGTGAC+TGG + chr3_3:63394865-63394884 Msa0463820:CDS 40.0%
GTCAAAGCAATTTCTGCTAC+AGG - chr3_3:63395061-63395080 None:intergenic 40.0%
GTAGCAGAAATTGCTTTGAC+CGG + chr3_3:63395061-63395080 Msa0463820:CDS 40.0%
TAGCAGAAATTGCTTTGACC+GGG + chr3_3:63395062-63395081 Msa0463820:CDS 40.0%
AAGGGCTTAAATTTGGAAGG+GGG - chr3_3:63395204-63395223 None:intergenic 40.0%
!! AGGCACTGATACAAGATACA+TGG - chr3_3:63395282-63395301 None:intergenic 40.0%
AGGATGGTGTCTGCTATTAT+TGG + chr3_3:63395797-63395816 Msa0463820:intron 40.0%
TTGAAGATCCTGAAGCCAAA+AGG - chr3_3:63395843-63395862 None:intergenic 40.0%
TTGGCTTCAGGATCTTCAAA+AGG + chr3_3:63395844-63395863 Msa0463820:intron 40.0%
TGGCTTCAGGATCTTCAAAA+GGG + chr3_3:63395845-63395864 Msa0463820:intron 40.0%
AAGAAGTTCTGCAATACCTC+CGG - chr3_3:63395893-63395912 None:intergenic 40.0%
TTATTTCATCACTCTCGGTC+TGG + chr3_3:63396011-63396030 Msa0463820:intron 40.0%
!! GTCTGGTTCTTCTTGATACA+GGG + chr3_3:63396028-63396047 Msa0463820:intron 40.0%
TCTTCTTGATACAGGGTTTC+AGG + chr3_3:63396035-63396054 Msa0463820:intron 40.0%
CTTCTTGATACAGGGTTTCA+GGG + chr3_3:63396036-63396055 Msa0463820:intron 40.0%
!! GCTAGTCTTTGCAAGAACTT+GGG - chr3_3:63396079-63396098 None:intergenic 40.0%
!! TGCTAGTCTTTGCAAGAACT+TGG - chr3_3:63396080-63396099 None:intergenic 40.0%
!! AGGAATGATAAAGTTGGTGC+AGG - chr3_3:63396241-63396260 None:intergenic 40.0%
TTGACTCATCAGCATAGGAA+AGG - chr3_3:63396261-63396280 None:intergenic 40.0%
TTGAAATGCATTGTCAGGGA+TGG - chr3_3:63396326-63396345 None:intergenic 40.0%
TGCATTTCAAAAGAACCCAG+TGG + chr3_3:63396336-63396355 Msa0463820:CDS 40.0%
GCATTTCAAAAGAACCCAGT+GGG + chr3_3:63396337-63396356 Msa0463820:CDS 40.0%
CATTTCAAAAGAACCCAGTG+GGG + chr3_3:63396338-63396357 Msa0463820:CDS 40.0%
ATCTGCAAATCTCCGTTATC+AGG + chr3_3:63396576-63396595 Msa0463820:CDS 40.0%
GTGGGTCTCACTAAATTATG+CGG + chr3_3:63396874-63396893 Msa0463820:intron 40.0%
TGGGTCTCACTAAATTATGC+GGG + chr3_3:63396875-63396894 Msa0463820:intron 40.0%
CTGAAGGATTGTAAGTTGCA+AGG - chr3_3:63397068-63397087 None:intergenic 40.0%
CTTGCAACTTACAATCCTTC+AGG + chr3_3:63397066-63397085 Msa0463820:intron 40.0%
GTCTGCTGTGTAGTTATTTG+AGG + chr3_3:63397173-63397192 Msa0463820:intron 40.0%
TTCCAATTTAGGTCTGCAAC+TGG + chr3_3:63397282-63397301 Msa0463820:intron 40.0%
CACGGACAATCAATTCTTAC+TGG + chr3_3:63397430-63397449 Msa0463820:CDS 40.0%
CGGACAATCAATTCTTACTG+GGG + chr3_3:63397432-63397451 Msa0463820:CDS 40.0%
! CAATCGGCTTACTTAAGATG+AGG - chr3_3:63397534-63397553 None:intergenic 40.0%
TTGGAAGCTTCGCTAACAAT+AGG - chr3_3:63397604-63397623 None:intergenic 40.0%
! TGAAAATGTGTATGGTGGAG+TGG + chr3_3:63397645-63397664 Msa0463820:intron 40.0%
AAAGAGGGGAAATTCACTTC+TGG + chr3_3:63397731-63397750 Msa0463820:intron 40.0%
CGTCCTAAGAGATCTTGTTA+TGG + chr3_3:63397802-63397821 Msa0463820:intron 40.0%
TAACAATTGCCTTAATGGCC+AGG + chr3_3:63397926-63397945 Msa0463820:intron 40.0%
TTCCCAACTTCAGGGAAATA+TGG + chr3_3:63398172-63398191 Msa0463820:intron 40.0%
GTCCATATTTCCCTGAAGTT+GGG - chr3_3:63398177-63398196 None:intergenic 40.0%
AGTCCATATTTCCCTGAAGT+TGG - chr3_3:63398178-63398197 None:intergenic 40.0%
TTGGTAAATTGCTGCAGCAA+TGG + chr3_3:63398519-63398538 Msa0463820:intron 40.0%
TTTGGAGAATCTGATGAAGG+TGG - chr3_3:63398599-63398618 None:intergenic 40.0%
GCTATCTTATGCAACTCTAC+CGG + chr3_3:63398626-63398645 Msa0463820:CDS 40.0%
TTTGGAGAATCTGATGAAGG+TGG - chr3_3:63398599-63398618 None:intergenic 40.0%
AAAAATGAAGCCCAATGCCC+AGG + chr3_3:63392704-63392723 Msa0463820:exon 45.0%
AAGATGAGTCTGGGAAGGTA+CGG - chr3_3:63392790-63392809 None:intergenic 45.0%
! GTTTTGCGGTGCGAAATTGT+CGG - chr3_3:63392833-63392852 None:intergenic 45.0%
GTGTTCGGTATTGTTAGCTG+CGG - chr3_3:63392880-63392899 None:intergenic 45.0%
AACAATACCGAACACCACGA+CGG + chr3_3:63392885-63392904 Msa0463820:CDS 45.0%
AAGAAGAAAGGAAGCTCCAG+CGG - chr3_3:63392988-63393007 None:intergenic 45.0%
TCTATCTTCTTCACCTCCTC+CGG - chr3_3:63393089-63393108 None:intergenic 45.0%
! GAAAGAGAGAGGGAAAGTGT+GGG + chr3_3:63393172-63393191 Msa0463820:CDS 45.0%
! AGTTCCGGTTCGAGATGATA+AGG + chr3_3:63393241-63393260 Msa0463820:CDS 45.0%
! AGCTTTTCCTGCTGATCTTC+AGG + chr3_3:63393340-63393359 Msa0463820:CDS 45.0%
CAAGTGACATAGGGTGCATT+TGG - chr3_3:63393663-63393682 None:intergenic 45.0%
ATCATGGCGCAAGTGACATA+GGG - chr3_3:63393672-63393691 None:intergenic 45.0%
TATCATGGCGCAAGTGACAT+AGG - chr3_3:63393673-63393692 None:intergenic 45.0%
GAGTACCACAAGCAACAAGA+CGG - chr3_3:63393997-63394016 None:intergenic 45.0%
TAACCAACTTCACGCTGATG+AGG + chr3_3:63394512-63394531 Msa0463820:intron 45.0%
TTAAGGACTGTCCAAGCAGA+AGG + chr3_3:63394616-63394635 Msa0463820:CDS 45.0%
GTCCAAGCAGAAGGAATTAG+TGG + chr3_3:63394625-63394644 Msa0463820:CDS 45.0%
CACAACTATCAACATACCGG+TGG - chr3_3:63394863-63394882 None:intergenic 45.0%
! CTCTAGCTCCATATGTGACA+TGG - chr3_3:63394897-63394916 None:intergenic 45.0%
CATGTCACATATGGAGCTAG+AGG + chr3_3:63394895-63394914 Msa0463820:CDS 45.0%
ACATATGGAGCTAGAGGAAC+TGG + chr3_3:63394901-63394920 Msa0463820:CDS 45.0%
CATATGGAGCTAGAGGAACT+GGG + chr3_3:63394902-63394921 Msa0463820:CDS 45.0%
ATATGGAGCTAGAGGAACTG+GGG + chr3_3:63394903-63394922 Msa0463820:CDS 45.0%
GGCGAATGAACTGTCTTTCT+GGG - chr3_3:63394987-63395006 None:intergenic 45.0%
GAAATGGCCAACTAACCTGT+GGG - chr3_3:63395137-63395156 None:intergenic 45.0%
! GGGCAATGAGAGCACATAAA+GGG - chr3_3:63395222-63395241 None:intergenic 45.0%
! TGGGCAATGAGAGCACATAA+AGG - chr3_3:63395223-63395242 None:intergenic 45.0%
! TGTGCTCTCATTGCCCATTT+TGG + chr3_3:63395226-63395245 Msa0463820:intron 45.0%
AATCTTCACGACAGCAGGTT+GGG - chr3_3:63395415-63395434 None:intergenic 45.0%
AAATCTTCACGACAGCAGGT+TGG - chr3_3:63395416-63395435 None:intergenic 45.0%
GTACAAATCTTCACGACAGC+AGG - chr3_3:63395420-63395439 None:intergenic 45.0%
! AGGGGGTATAATTGAGCCAT+CGG + chr3_3:63395652-63395671 Msa0463820:intron 45.0%
TATAATTGAGCCATCGGCAG+TGG + chr3_3:63395658-63395677 Msa0463820:intron 45.0%
AAACTAGTTACCACTGCCGA+TGG - chr3_3:63395671-63395690 None:intergenic 45.0%
TCTTGGTTTAGTATCACCGG+AGG + chr3_3:63395874-63395893 Msa0463820:CDS 45.0%
!! TGAGTGAGTTCTGAAAGCAG+AGG - chr3_3:63395932-63395951 None:intergenic 45.0%
!! GGTCTGGTTCTTCTTGATAC+AGG + chr3_3:63396027-63396046 Msa0463820:intron 45.0%
GGGTTTCAGGGAAAGATTGT+TGG + chr3_3:63396048-63396067 Msa0463820:intron 45.0%
GTTATTACGGACACTGTCAG+AGG + chr3_3:63396184-63396203 Msa0463820:CDS 45.0%
! CGCAATTGACTCATCAGCAT+AGG - chr3_3:63396266-63396285 None:intergenic 45.0%
GATTCCAATTTGTCCCCACT+GGG - chr3_3:63396354-63396373 None:intergenic 45.0%
AGATTCCAATTTGTCCCCAC+TGG - chr3_3:63396355-63396374 None:intergenic 45.0%
! TTTGGTGGTCTAAAACTCGC+TGG + chr3_3:63396400-63396419 Msa0463820:CDS 45.0%
TCTTAGGACGCTCTTAGACA+AGG - chr3_3:63397792-63397811 None:intergenic 45.0%
AATTGCCTTAATGGCCAGGT+TGG + chr3_3:63397930-63397949 Msa0463820:intron 45.0%
AAATGCCAACCTGGCCATTA+AGG - chr3_3:63397938-63397957 None:intergenic 45.0%
! GCCAGGTTGGCATTTATCTT+CGG + chr3_3:63397943-63397962 Msa0463820:intron 45.0%
ACCGAAGATAAATGCCAACC+TGG - chr3_3:63397947-63397966 None:intergenic 45.0%
! GGTCTTTGTAACTTGCAGTC+CGG - chr3_3:63398648-63398667 None:intergenic 45.0%
GAGCTGGTAAATAGGCACAA+AGG + chr3_3:63398822-63398841 Msa0463820:three_prime_UTR 45.0%
TGAAAGTAAGTCACGTGCGG+CGG - chr3_3:63392747-63392766 None:intergenic 50.0%
CGGTGAAAGTAAGTCACGTG+CGG - chr3_3:63392750-63392769 None:intergenic 50.0%
!!! TGTCGGAGTTTTTGGTTCGG+AGG - chr3_3:63392816-63392835 None:intergenic 50.0%
GGTATTGTTAGCTGCGGTGA+TGG - chr3_3:63392874-63392893 None:intergenic 50.0%
! GTTGTTTCCGTCGTGGTGTT+CGG - chr3_3:63392895-63392914 None:intergenic 50.0%
GAACACCACGACGGAAACAA+CGG + chr3_3:63392894-63392913 Msa0463820:CDS 50.0%
GTTCTCCAGTACGAAGCAAC+CGG + chr3_3:63392934-63392953 Msa0463820:CDS 50.0%
GAAGCTCCAGCGGCTAAAAA+CGG - chr3_3:63392978-63392997 None:intergenic 50.0%
!! TACGGTGTCGGTTGAAGCAA+CGG + chr3_3:63393055-63393074 Msa0463820:CDS 50.0%
AGCAACGGTTGTTAAACCGG+AGG + chr3_3:63393070-63393089 Msa0463820:CDS 50.0%
AACGGTTGTTAAACCGGAGG+AGG + chr3_3:63393073-63393092 Msa0463820:CDS 50.0%
GGAGGAGGTGAAGAAGATAG+AGG + chr3_3:63393088-63393107 Msa0463820:CDS 50.0%
GGAGGTGAAGAAGATAGAGG+AGG + chr3_3:63393091-63393110 Msa0463820:CDS 50.0%
! AGGAGGAAGTGATAACGTCG+AGG + chr3_3:63393108-63393127 Msa0463820:CDS 50.0%
ATAGGTGAACCGTTGGCGAT+AGG + chr3_3:63393149-63393168 Msa0463820:CDS 50.0%
TAGGTGAACCGTTGGCGATA+GGG + chr3_3:63393150-63393169 Msa0463820:CDS 50.0%
CTCTCTTTCCCTATCGCCAA+CGG - chr3_3:63393161-63393180 None:intergenic 50.0%
TTGGCGATAGGGAAAGAGAG+AGG + chr3_3:63393161-63393180 Msa0463820:CDS 50.0%
TGGCGATAGGGAAAGAGAGA+GGG + chr3_3:63393162-63393181 Msa0463820:CDS 50.0%
GGAAAGAGAGAGGGAAAGTG+TGG + chr3_3:63393171-63393190 Msa0463820:CDS 50.0%
ACTTGACTGTCATGGCAGGA+TGG + chr3_3:63393877-63393896 Msa0463820:intron 50.0%
TCATACTCCTGCCATCGTTC+AGG - chr3_3:63393941-63393960 None:intergenic 50.0%
! GGAATCCGTCTTGTTGCTTG+TGG + chr3_3:63393989-63394008 Msa0463820:CDS 50.0%
TGCTTGTGGTACTCCACTGA+AGG + chr3_3:63394003-63394022 Msa0463820:CDS 50.0%
GATCCTCATCAGCGTGAAGT+TGG - chr3_3:63394518-63394537 None:intergenic 50.0%
GCCCACTAATTCCTTCTGCT+TGG - chr3_3:63394630-63394649 None:intergenic 50.0%
GCCTGATATGAAGCCTGAAC+CGG - chr3_3:63394689-63394708 None:intergenic 50.0%
TCTATCTGCACAGGCTAGAG+TGG + chr3_3:63394783-63394802 Msa0463820:CDS 50.0%
GGTGCTAGCCATGTCACATA+TGG + chr3_3:63394886-63394905 Msa0463820:CDS 50.0%
CGGCGAATGAACTGTCTTTC+TGG - chr3_3:63394988-63395007 None:intergenic 50.0%
AAGACAGTTCATTCGCCGTG+AGG + chr3_3:63394990-63395009 Msa0463820:CDS 50.0%
AGACAGTTCATTCGCCGTGA+GGG + chr3_3:63394991-63395010 Msa0463820:CDS 50.0%
CAACAGGAACTTCTCCCTCA+CGG - chr3_3:63395008-63395027 None:intergenic 50.0%
ATTTCTGCTACAGGGTCTGG+CGG - chr3_3:63395052-63395071 None:intergenic 50.0%
GCAATTTCTGCTACAGGGTC+TGG - chr3_3:63395055-63395074 None:intergenic 50.0%
! TTGACCGGGTTGAGATTGCT+CGG + chr3_3:63395076-63395095 Msa0463820:CDS 50.0%
TAACCCGAGCAATCTCAACC+CGG - chr3_3:63395083-63395102 None:intergenic 50.0%
CTCGGGTTATGAATGCTGCT+GGG + chr3_3:63395094-63395113 Msa0463820:CDS 50.0%
CGAAATGGCCAACTAACCTG+TGG - chr3_3:63395138-63395157 None:intergenic 50.0%
GCAGACACCATCCTGTCTAA+AGG - chr3_3:63395791-63395810 None:intergenic 50.0%
AGAACTCACTCACCGTTTCC+AGG + chr3_3:63395940-63395959 Msa0463820:CDS 50.0%
AGAACCCAGTGGGGACAAAT+TGG + chr3_3:63396347-63396366 Msa0463820:CDS 50.0%
TACAATCCTTCAGGGCTCAC+TGG + chr3_3:63397075-63397094 Msa0463820:intron 50.0%
GGCCAGTTGCAGACCTAAAT+TGG - chr3_3:63397287-63397306 None:intergenic 50.0%
GCAGATAATTGCTGGGGTTG+TGG + chr3_3:63397344-63397363 Msa0463820:intron 50.0%
CAATTCTTACTGGGGAACGC+AGG + chr3_3:63397440-63397459 Msa0463820:CDS 50.0%
GAATCTGATGAAGGTGGCTC+AGG - chr3_3:63398593-63398612 None:intergenic 50.0%
GAATCTGATGAAGGTGGCTC+AGG - chr3_3:63398593-63398612 None:intergenic 50.0%
GCGAAAGAAGCCTGGGCATT+GGG - chr3_3:63392717-63392736 None:intergenic 55.0%
GAAAGTAAGTCACGTGCGGC+GGG - chr3_3:63392746-63392765 None:intergenic 55.0%
GGTGGAAGATGAGTCTGGGA+AGG - chr3_3:63392795-63392814 None:intergenic 55.0%
CGGAGGTGGAAGATGAGTCT+GGG - chr3_3:63392799-63392818 None:intergenic 55.0%
TCGGAGGTGGAAGATGAGTC+TGG - chr3_3:63392800-63392819 None:intergenic 55.0%
!!! CGGAGTTTTTGGTTCGGAGG+TGG - chr3_3:63392813-63392832 None:intergenic 55.0%
TGATGGAGAGGTTGACACGG+CGG - chr3_3:63392857-63392876 None:intergenic 55.0%
!! CGGTGATGGAGAGGTTGACA+CGG - chr3_3:63392860-63392879 None:intergenic 55.0%
!! TGTTAGCTGCGGTGATGGAG+AGG - chr3_3:63392869-63392888 None:intergenic 55.0%
CGTCGCCGCAGAAAGAAGAA+AGG - chr3_3:63393000-63393019 None:intergenic 55.0%
TTCTTTCTGCGGCGACGACA+AGG + chr3_3:63393003-63393022 Msa0463820:CDS 55.0%
TCTTTCTGCGGCGACGACAA+GGG + chr3_3:63393004-63393023 Msa0463820:CDS 55.0%
GGCGGAGGAGGAGAAGATAA+AGG + chr3_3:63393028-63393047 Msa0463820:CDS 55.0%
AACGGCGATAGGTGAACCGT+TGG + chr3_3:63393142-63393161 Msa0463820:CDS 55.0%
GGGGGAAGCTGAACAAGTTC+CGG + chr3_3:63393226-63393245 Msa0463820:CDS 55.0%
AGTGGCTCCTGAAGATCAGC+AGG - chr3_3:63393350-63393369 None:intergenic 55.0%
GACTGTCATGGCAGGATGGA+TGG + chr3_3:63393881-63393900 Msa0463820:intron 55.0%
TACTCCTGCCATCGTTCAGG+CGG - chr3_3:63393938-63393957 None:intergenic 55.0%
GATATGAAGCCTGAACCGGC+TGG - chr3_3:63394685-63394704 None:intergenic 55.0%
! GCCGGTTCAGGCTTCATATC+AGG + chr3_3:63394685-63394704 Msa0463820:CDS 55.0%
! TGACCGGGTTGAGATTGCTC+GGG + chr3_3:63395077-63395096 Msa0463820:CDS 55.0%
GCTCGGGTTATGAATGCTGC+TGG + chr3_3:63395093-63395112 Msa0463820:CDS 55.0%
TGAATGCTGCTGGGCAGAGA+CGG + chr3_3:63395103-63395122 Msa0463820:CDS 55.0%
ATGCCCTCCCACAGGTTAGT+TGG + chr3_3:63395127-63395146 Msa0463820:intron 55.0%
TGGCCAACTAACCTGTGGGA+GGG - chr3_3:63395133-63395152 None:intergenic 55.0%
ATGGCCAACTAACCTGTGGG+AGG - chr3_3:63395134-63395153 None:intergenic 55.0%
! GGTCTAAAACTCGCTGGCGT+TGG + chr3_3:63396406-63396425 Msa0463820:CDS 55.0%
CAGTATCCAGTGAGCCCTGA+AGG - chr3_3:63397084-63397103 None:intergenic 55.0%
TTGCTGGGGTTGTGGAGCAT+CGG + chr3_3:63397352-63397371 Msa0463820:CDS 55.0%
ATTGACCTCGCACGCTCTAC+TGG + chr3_3:63398542-63398561 Msa0463820:CDS 55.0%
TGAAGGTGGCTCAGGTGACT+CGG - chr3_3:63398585-63398604 None:intergenic 55.0%
TGAAGGTGGCTCAGGTGACT+CGG - chr3_3:63398585-63398604 None:intergenic 55.0%
GGCGAAAGAAGCCTGGGCAT+TGG - chr3_3:63392718-63392737 None:intergenic 60.0%
GCCTGTGGCGAAAGAAGCCT+GGG - chr3_3:63392724-63392743 None:intergenic 60.0%
CGGCACGTGAGACAGTTACG+CGG - chr3_3:63392770-63392789 None:intergenic 60.0%
! GTTGACACGGCGGCGTTTTG+CGG - chr3_3:63392847-63392866 None:intergenic 60.0%
!! CAACCGGCGAGGAGTGTTGA+TGG + chr3_3:63392950-63392969 Msa0463820:CDS 60.0%
!!! ATGGCGCCGTTTTTAGCCGC+TGG + chr3_3:63392969-63392988 Msa0463820:CDS 60.0%
! TGCATTGGCCGCCTGAACGA+TGG + chr3_3:63393927-63393946 Msa0463820:CDS 60.0%
! TATGCACCTCCAGCCGGTTC+AGG + chr3_3:63394673-63394692 Msa0463820:CDS 60.0%
ATGAAGCCTGAACCGGCTGG+AGG - chr3_3:63394682-63394701 None:intergenic 60.0%
ATGCTTGATGGAGGGGCCAC+CGG + chr3_3:63394844-63394863 Msa0463820:CDS 60.0%
GAATGCTGCTGGGCAGAGAC+GGG + chr3_3:63395104-63395123 Msa0463820:CDS 60.0%
GCCCAGGCTTCTTTCGCCAC+AGG + chr3_3:63392720-63392739 Msa0463820:CDS 65.0%
GGCCTGTGGCGAAAGAAGCC+TGG - chr3_3:63392725-63392744 None:intergenic 65.0%
! CGACGCCGTTGTTTCCGTCG+TGG - chr3_3:63392902-63392921 None:intergenic 65.0%
! CCTCGCCGGTTGCTTCGTAC+TGG - chr3_3:63392942-63392961 None:intergenic 65.0%
CCAGTACGAAGCAACCGGCG+AGG + chr3_3:63392939-63392958 Msa0463820:CDS 65.0%
GCGCCATCAACACTCCTCGC+CGG - chr3_3:63392956-63392975 None:intergenic 65.0%
TTCTGCGGCGACGACAAGGG+CGG + chr3_3:63393007-63393026 Msa0463820:CDS 65.0%
TTGGCCGCCTGAACGATGGC+AGG + chr3_3:63393931-63393950 Msa0463820:CDS 65.0%
GCAGTCCAGTAGAGCGTGCG+AGG - chr3_3:63398550-63398569 None:intergenic 65.0%
GAGACGGGATGCCCTCCCAC+AGG + chr3_3:63395119-63395138 Msa0463820:CDS 70.0%
AGTCACGTGCGGCGGGCCTG+TGG - chr3_3:63392739-63392758 None:intergenic 75.0%
TGCGGCGACGACAAGGGCGG+CGG + chr3_3:63393010-63393029 Msa0463820:CDS 75.0%
GACGACAAGGGCGGCGGAGG+AGG + chr3_3:63393016-63393035 Msa0463820:CDS 75.0%
! GGCGACGACAAGGGCGGCGG+AGG + chr3_3:63393013-63393032 Msa0463820:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 63392541 63398965 63392541 ID=Msa0463820;Name=Msa0463820
chr3_3 mRNA 63392541 63398965 63392541 ID=Msa0463820-mRNA-1;Parent=Msa0463820;Name=Msa0463820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=167|1|1|1|1|1|7|199|780
chr3_3 exon 63392541 63393390 63392541 ID=Msa0463820-mRNA-1:exon:13783;Parent=Msa0463820-mRNA-1
chr3_3 exon 63393895 63394024 63393895 ID=Msa0463820-mRNA-1:exon:13784;Parent=Msa0463820-mRNA-1
chr3_3 exon 63394613 63395140 63394613 ID=Msa0463820-mRNA-1:exon:13785;Parent=Msa0463820-mRNA-1
chr3_3 exon 63395854 63395961 63395854 ID=Msa0463820-mRNA-1:exon:13786;Parent=Msa0463820-mRNA-1
chr3_3 exon 63396049 63396597 63396049 ID=Msa0463820-mRNA-1:exon:13787;Parent=Msa0463820-mRNA-1
chr3_3 exon 63397348 63397461 63397348 ID=Msa0463820-mRNA-1:exon:13788;Parent=Msa0463820-mRNA-1
chr3_3 exon 63398536 63398965 63398536 ID=Msa0463820-mRNA-1:exon:13789;Parent=Msa0463820-mRNA-1
chr3_3 five_prime_UTR 63392541 63392707 63392541 ID=Msa0463820-mRNA-1:five_prime_utr;Parent=Msa0463820-mRNA-1
chr3_3 CDS 63392708 63393390 63392708 ID=Msa0463820-mRNA-1:cds;Parent=Msa0463820-mRNA-1
chr3_3 CDS 63393895 63394024 63393895 ID=Msa0463820-mRNA-1:cds;Parent=Msa0463820-mRNA-1
chr3_3 CDS 63394613 63395140 63394613 ID=Msa0463820-mRNA-1:cds;Parent=Msa0463820-mRNA-1
chr3_3 CDS 63395854 63395961 63395854 ID=Msa0463820-mRNA-1:cds;Parent=Msa0463820-mRNA-1
chr3_3 CDS 63396049 63396597 63396049 ID=Msa0463820-mRNA-1:cds;Parent=Msa0463820-mRNA-1
chr3_3 CDS 63397348 63397461 63397348 ID=Msa0463820-mRNA-1:cds;Parent=Msa0463820-mRNA-1
chr3_3 CDS 63398536 63398766 63398536 ID=Msa0463820-mRNA-1:cds;Parent=Msa0463820-mRNA-1
chr3_3 three_prime_UTR 63398767 63398965 63398767 ID=Msa0463820-mRNA-1:three_prime_utr;Parent=Msa0463820-mRNA-1
Gene Sequence

>Msa0463820

ATGAAGCCCAATGCCCAGGCTTCTTTCGCCACAGGCCCGCCGCACGTGACTTACTTTCACCGCGTAACTGTCTCACGTGCCGTACCTTCCCAGACTCATCTTCCACCTCCGAACCAAAAACTCCGACAATTTCGCACCGCAAAACGCCGCCGTGTCAACCTCTCCATCACCGCAGCTAACAATACCGAACACCACGACGGAAACAACGGCGTCGAGCGAATAGAATGTTCTCCAGTACGAAGCAACCGGCGAGGAGTGTTGATGGCGCCGTTTTTAGCCGCTGGAGCTTCCTTTCTTCTTTCTGCGGCGACGACAAGGGCGGCGGAGGAGGAGAAGATAAAGGAGAATACGGTGTCGGTTGAAGCAACGGTTGTTAAACCGGAGGAGGTGAAGAAGATAGAGGAGGAAGTGATAACGTCGAGGATATATGATGCAACGGCGATAGGTGAACCGTTGGCGATAGGGAAAGAGAGAGGGAAAGTGTGGGAGAAGTTGATGAATGCTAGAGTTGTGTATTTGGGGGAAGCTGAACAAGTTCCGGTTCGAGATGATAAGGAATTGGAGCTTGAGATTGTAAAGAATTTGCATAAGCGGTGTGTTGATGTTGATAAGCGATTATCTTTGGCTATTGAAGCTTTTCCTGCTGATCTTCAGGAGCCACTTAATCAGTATATGGATAAAAAGATGGATGGAGAAACCTTGAAGTCTTATACAATGCATTGGCCGCCTGAACGATGGCAGGAGTATGAACCTATTCTTAGTTACTGTCGTGAAAATGGAATCCGTCTTGTTGCTTGTGGTACTCCACTGAAGATCTTAAGGACTGTCCAAGCAGAAGGAATTAGTGGGCTAACAAAGGCTGAACGTAAATTATATGCACCTCCAGCCGGTTCAGGCTTCATATCAGGCTTTTCTTCTATGTCACGTAGATATTCAGCTGACAGTACTCCAAATCTGTCGTTTCCTTTTGGTCCAAGCTCATATCTATCTGCACAGGCTAGAGTGGTTGACGAGTATACTATGTCCCAGACCATCTTACAAAATATGCTTGATGGAGGGGCCACCGGTATGTTGATAGTTGTGACTGGTGCTAGCCATGTCACATATGGAGCTAGAGGAACTGGGGTGCCTGCAAGAATATCAAGAAAATTACAAAAGAAAAATCAAGTAGTTATATTACTTGACCCAGAAAGACAGTTCATTCGCCGTGAGGGAGAAGTTCCTGTTGCTGATTTTTTGTGGTATTCTGCCGCCAGACCCTGTAGCAGAAATTGCTTTGACCGGGTTGAGATTGCTCGGGTTATGAATGCTGCTGGGCAGAGACGGGATGCCCTCCCACAGGATCTTCAAAAGGGAATTGATCTTGGTTTAGTATCACCGGAGGTATTGCAGAACTTCTTTGATCTAGAGAAATATCCTCTGCTTTCAGAACTCACTCACCGTTTCCAGGGTTTCAGGGAAAGATTGTTGGCAGATCCCAAGTTCTTGCAAAGACTAGCAATAGAAGAAGGAATATCAGTAACAACTACATTATTAGCACAGTATCAGAAGCGGAAAGAAAACTTCTTTCAAGAGCTTGACTATGTTATTACGGACACTGTCAGAGGATCAGTTGTTGATTTCTTCACAGTGTGGCTTCCTGCACCAACTTTATCATTCCTTTCCTATGCTGATGAGTCAATTGCGCCTGATAACATTAGTTCTCTAATAGGACTTCTTGGCTCCATCCCTGACAATGCATTTCAAAAGAACCCAGTGGGGACAAATTGGAATCTCAATCATCGAATTGCATCAGTTGTATTTGGTGGTCTAAAACTCGCTGGCGTTGGATTTATTTCAAGTATTGGAGCTGTTGCTTCATCAAATTCTCTGTTTGCAGTTCGTAAGTTTCTTAATCCGGCAATTATCACTAACAAACAGATTGCAAGGTCACCGATACTCAAAACAGCAGTTGTTTATGCACTTTTTCTTGGAATATCTGCAAATCTCCGTTATCAGATAATTGCTGGGGTTGTGGAGCATCGGATTTCTGATCAGTTTGCTTCCCAAACATTTCTTGTAAATATGCTATCTTTTGTATCACGGACAATCAATTCTTACTGGGGAACGCAGCAATGGATTGACCTCGCACGCTCTACTGGACTGCAAGTTAGAAAGACCGAGTCACCTGAGCCACCTTCATCAGATTCTCCAAATCAAGCTGCTATCTTATGCAACTCTACCGGACTGCAAGTTACAAAGACCGAGTCACCTGAGCCACCTTCATCAGATTCTCCAAATCAAGCTGCAATCTTATGCAACGAAGCAGAAGAAGCCAGCATCGATGAGATTAAAAGTGAATGA
Protein sequence

>Msa0463820

MKPNAQASFATGPPHVTYFHRVTVSRAVPSQTHLPPPNQKLRQFRTAKRRRVNLSITAANNTEHHDGNNGVERIECSPVRSNRRGVLMAPFLAAGASFLLSAATTRAAEEEKIKENTVSVEATVVKPEEVKKIEEEVITSRIYDATAIGEPLAIGKERGKVWEKLMNARVVYLGEAEQVPVRDDKELELEIVKNLHKRCVDVDKRLSLAIEAFPADLQEPLNQYMDKKMDGETLKSYTMHWPPERWQEYEPILSYCRENGIRLVACGTPLKILRTVQAEGISGLTKAERKLYAPPAGSGFISGFSSMSRRYSADSTPNLSFPFGPSSYLSAQARVVDEYTMSQTILQNMLDGGATGMLIVVTGASHVTYGARGTGVPARISRKLQKKNQVVILLDPERQFIRREGEVPVADFLWYSAARPCSRNCFDRVEIARVMNAAGQRRDALPQDLQKGIDLGLVSPEVLQNFFDLEKYPLLSELTHRFQGFRERLLADPKFLQRLAIEEGISVTTTLLAQYQKRKENFFQELDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADESIAPDNISSLIGLLGSIPDNAFQKNPVGTNWNLNHRIASVVFGGLKLAGVGFISSIGAVASSNSLFAVRKFLNPAIITNKQIARSPILKTAVVYALFLGISANLRYQIIAGVVEHRISDQFASQTFLVNMLSFVSRTINSYWGTQQWIDLARSTGLQVRKTESPEPPSSDSPNQAAILCNSTGLQVTKTESPEPPSSDSPNQAAILCNEAEEASIDEIKSE*