Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978500 | KEH17299.1 | 92.958 | 71 | 5 | 0 | 43 | 113 | 56 | 126 | 2.12e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978500 | A0A072TIC2 | 92.958 | 71 | 5 | 0 | 43 | 113 | 56 | 126 | 1.01e-40 | 141 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0164980 | Msa0978500 | 0.809345 | 1.981266e-50 | -8.615850e-47 |
| Msa0288100 | Msa0978500 | 0.801287 | 9.670164e-49 | -8.615850e-47 |
| Msa0350990 | Msa0978500 | 0.811521 | 6.714989e-51 | -8.615850e-47 |
| Msa0351030 | Msa0978500 | 0.812582 | 3.943797e-51 | -8.615850e-47 |
| Msa0978500 | Msa1081590 | 0.808318 | 3.285129e-50 | -8.615850e-47 |
| Msa0978500 | Msa1238930 | 0.803391 | 3.564728e-49 | -8.615850e-47 |
| Msa0978500 | Msa1284680 | 0.818075 | 2.368800e-52 | -8.615850e-47 |
| Msa0978500 | Msa1313140 | 0.801082 | 1.064967e-48 | -8.615850e-47 |
| Msa0978500 | Msa1353470 | 0.800732 | 1.255515e-48 | -8.615850e-47 |
| Msa0978500 | Msa1362880 | 0.805776 | 1.133983e-49 | -8.615850e-47 |
| Msa0978500 | Msa1423870 | 0.800636 | 1.313217e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978500 | MtrunA17_Chr6g0457391 | 92.754 | 69 | 5 | 0 | 45 | 113 | 1 | 69 | 6.17e-43 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978500 | AT5G16060.1 | 73.913 | 69 | 18 | 0 | 45 | 113 | 1 | 69 | 7.09e-33 | 110 |
Find 18 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATCCTCAAAGGTTGAAA+TGG | 0.320325 | 6_4:+14538664 | Msa0978500:CDS |
| GGAGAACACTTTCTGTTGTT+TGG | 0.342847 | 6_4:+14539636 | Msa0978500:CDS |
| ACCACCCATTTCAACCTTTG+AGG | 0.417630 | 6_4:-14538669 | None:intergenic |
| CTGTTCTTCTGAATCCTCAA+AGG | 0.445378 | 6_4:+14538655 | Msa0978500:CDS |
| GAATCCTCAAAGGTTGAAAT+GGG | 0.491464 | 6_4:+14538665 | Msa0978500:CDS |
| ACTTTCAGCTCCTGCGACTG+AGG | 0.522971 | 6_4:+14538627 | Msa0978500:CDS |
| TTTCTGTTGTTTGGCAATGT+CGG | 0.528813 | 6_4:+14539645 | Msa0978500:CDS |
| AAATATGCTGAGTGTGCTAT+GGG | 0.534698 | 6_4:+14539614 | Msa0978500:CDS |
| GCAATGTCGGAAAGTAGCTA+AGG | 0.538984 | 6_4:+14539658 | Msa0978500:CDS |
| GAAATATGCTGAGTGTGCTA+TGG | 0.542058 | 6_4:+14539613 | Msa0978500:CDS |
| AGCTTTACGGAGTAAAATGA+AGG | 0.543630 | 6_4:+14539556 | Msa0978500:intron |
| CAATGTCGGAAAGTAGCTAA+GGG | 0.551390 | 6_4:+14539659 | Msa0978500:CDS |
| AACAGAACAACCTCAGTCGC+AGG | 0.566314 | 6_4:-14538637 | None:intergenic |
| ACGGAGTAAAATGAAGGTGA+AGG | 0.589183 | 6_4:+14539562 | Msa0978500:CDS |
| TCCTCAAAGGTTGAAATGGG+TGG | 0.593357 | 6_4:+14538668 | Msa0978500:CDS |
| GTGAAGAAGAAAGTCGAAGA+AGG | 0.598683 | 6_4:+14538719 | Msa0978500:CDS |
| AATGTCGGAAAGTAGCTAAG+GGG | 0.717917 | 6_4:+14539660 | Msa0978500:CDS |
| AATATGCTGAGTGTGCTATG+GGG | 0.810113 | 6_4:+14539615 | Msa0978500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTTTTTTTTTTTTG+AGG | - | chr6_4:14538570-14538589 | None:intergenic | 10.0% |
| !!! | TTTGTTTTTTTTTTTTTTTG+AGG | - | chr6_4:14538570-14538589 | None:intergenic | 10.0% |
| !!! | TCAATTTTTATGAACAAATA+TGG | + | chr6_4:14538798-14538817 | Msa0978500:intron | 15.0% |
| !!! | CAATTTTTATGAACAAATAT+GGG | + | chr6_4:14538799-14538818 | Msa0978500:intron | 15.0% |
| !! | TATATACATTAATCCATAAA+TGG | + | chr6_4:14538845-14538864 | Msa0978500:intron | 15.0% |
| !! | ATATACATTAATCCATAAAT+GGG | + | chr6_4:14538846-14538865 | Msa0978500:intron | 15.0% |
| !!! | GTCATTTTTTAAATTATTAC+CGG | + | chr6_4:14539306-14539325 | Msa0978500:intron | 15.0% |
| !!! | TCAATTTTTATGAACAAATA+TGG | + | chr6_4:14538798-14538817 | Msa0978500:intron | 15.0% |
| !!! | CAATTTTTATGAACAAATAT+GGG | + | chr6_4:14538799-14538818 | Msa0978500:intron | 15.0% |
| !! | TATATACATTAATCCATAAA+TGG | + | chr6_4:14538845-14538864 | Msa0978500:intron | 15.0% |
| !! | ATATACATTAATCCATAAAT+GGG | + | chr6_4:14538846-14538865 | Msa0978500:intron | 15.0% |
| !!! | GTCATTTTTTAAATTATTAC+CGG | + | chr6_4:14539306-14539325 | Msa0978500:intron | 15.0% |
| !! | CTTTATGATGAAGAAAAAAT+GGG | - | chr6_4:14538776-14538795 | None:intergenic | 20.0% |
| !! | ACTTTATGATGAAGAAAAAA+TGG | - | chr6_4:14538777-14538796 | None:intergenic | 20.0% |
| !! | AAATATGGGTTTATTTCAAA+TGG | + | chr6_4:14538813-14538832 | Msa0978500:intron | 20.0% |
| !! | AATATGGGTTTATTTCAAAT+GGG | + | chr6_4:14538814-14538833 | Msa0978500:intron | 20.0% |
| !!! | TATCATCATTTTCATTCAAT+TGG | + | chr6_4:14538917-14538936 | Msa0978500:intron | 20.0% |
| !!! | ATCATCATTTTCATTCAATT+GGG | + | chr6_4:14538918-14538937 | Msa0978500:intron | 20.0% |
| !! | CATATTATTGAAATGGATAA+CGG | - | chr6_4:14539212-14539231 | None:intergenic | 20.0% |
| !!! | TAAGAAGCATATTATTGAAA+TGG | - | chr6_4:14539219-14539238 | None:intergenic | 20.0% |
| !! | CTTTATGATGAAGAAAAAAT+GGG | - | chr6_4:14538776-14538795 | None:intergenic | 20.0% |
| !! | ACTTTATGATGAAGAAAAAA+TGG | - | chr6_4:14538777-14538796 | None:intergenic | 20.0% |
| !! | AAATATGGGTTTATTTCAAA+TGG | + | chr6_4:14538813-14538832 | Msa0978500:intron | 20.0% |
| !! | AATATGGGTTTATTTCAAAT+GGG | + | chr6_4:14538814-14538833 | Msa0978500:intron | 20.0% |
| !!! | TATCATCATTTTCATTCAAT+TGG | + | chr6_4:14538917-14538936 | Msa0978500:intron | 20.0% |
| !!! | ATCATCATTTTCATTCAATT+GGG | + | chr6_4:14538918-14538937 | Msa0978500:intron | 20.0% |
| !! | CATATTATTGAAATGGATAA+CGG | - | chr6_4:14539212-14539231 | None:intergenic | 20.0% |
| !!! | TAAGAAGCATATTATTGAAA+TGG | - | chr6_4:14539219-14539238 | None:intergenic | 20.0% |
| !! | AAAAGAAGTTTTCCATTCTT+CGG | + | chr6_4:14538589-14538608 | Msa0978500:CDS | 25.0% |
| ! | GTTAGGGTTTAGTATTATTA+TGG | - | chr6_4:14538747-14538766 | None:intergenic | 25.0% |
| !!! | ATGAAGAAAAAATGGGTTTT+GGG | - | chr6_4:14538769-14538788 | None:intergenic | 25.0% |
| !! | CATAATTTGAAACCCATTTA+TGG | - | chr6_4:14538861-14538880 | None:intergenic | 25.0% |
| ! | GGTTTCAAATTATGATCAAA+TGG | + | chr6_4:14538867-14538886 | Msa0978500:intron | 25.0% |
| !! | TTTTCATTCAATTGGGTTTT+AGG | + | chr6_4:14538925-14538944 | Msa0978500:intron | 25.0% |
| ! | TTATACATAAGTGCTTATCA+TGG | - | chr6_4:14539000-14539019 | None:intergenic | 25.0% |
| !!! | TTCATTTTTCGTTGTGTTTT+TGG | + | chr6_4:14539438-14539457 | Msa0978500:intron | 25.0% |
| ! | ATGATCAAAACATCGTTTAA+TGG | + | chr6_4:14539499-14539518 | Msa0978500:intron | 25.0% |
| !! | AAAAGAAGTTTTCCATTCTT+CGG | + | chr6_4:14538589-14538608 | Msa0978500:CDS | 25.0% |
| ! | GTTAGGGTTTAGTATTATTA+TGG | - | chr6_4:14538747-14538766 | None:intergenic | 25.0% |
| !!! | ATGAAGAAAAAATGGGTTTT+GGG | - | chr6_4:14538769-14538788 | None:intergenic | 25.0% |
| !! | CATAATTTGAAACCCATTTA+TGG | - | chr6_4:14538861-14538880 | None:intergenic | 25.0% |
| ! | GGTTTCAAATTATGATCAAA+TGG | + | chr6_4:14538867-14538886 | Msa0978500:intron | 25.0% |
| !! | TTTTCATTCAATTGGGTTTT+AGG | + | chr6_4:14538925-14538944 | Msa0978500:intron | 25.0% |
| ! | TTATACATAAGTGCTTATCA+TGG | - | chr6_4:14539000-14539019 | None:intergenic | 25.0% |
| !!! | TTCATTTTTCGTTGTGTTTT+TGG | + | chr6_4:14539438-14539457 | Msa0978500:intron | 25.0% |
| ! | ATGATCAAAACATCGTTTAA+TGG | + | chr6_4:14539499-14539518 | Msa0978500:intron | 25.0% |
| !!! | AAAAAATGGGTTTTGGGTTA+GGG | - | chr6_4:14538763-14538782 | None:intergenic | 30.0% |
| !! | GATGAAGAAAAAATGGGTTT+TGG | - | chr6_4:14538770-14538789 | None:intergenic | 30.0% |
| !! | GTTTGATAGTGAAATTGATG+TGG | + | chr6_4:14538889-14538908 | Msa0978500:intron | 30.0% |
| CTATAAGCTACAGAAAAAGA+TGG | - | chr6_4:14538965-14538984 | None:intergenic | 30.0% | |
| ATAATCACATGTGTTAGAGA+CGG | - | chr6_4:14539276-14539295 | None:intergenic | 30.0% | |
| !!! | AGATGGGTTTTATTCTAATG+AGG | + | chr6_4:14539467-14539486 | Msa0978500:intron | 30.0% |
| ACATCGTTTAATGGTGATAT+TGG | + | chr6_4:14539508-14539527 | Msa0978500:intron | 30.0% | |
| TAATGGTGATATTGGAATGA+TGG | + | chr6_4:14539516-14539535 | Msa0978500:intron | 30.0% | |
| AATGGTGATATTGGAATGAT+GGG | + | chr6_4:14539517-14539536 | Msa0978500:intron | 30.0% | |
| ! | TGATCAATTTTGCAGCTTTA+CGG | + | chr6_4:14539543-14539562 | Msa0978500:intron | 30.0% |
| !!! | AAAAAATGGGTTTTGGGTTA+GGG | - | chr6_4:14538763-14538782 | None:intergenic | 30.0% |
| !! | GATGAAGAAAAAATGGGTTT+TGG | - | chr6_4:14538770-14538789 | None:intergenic | 30.0% |
| !! | GTTTGATAGTGAAATTGATG+TGG | + | chr6_4:14538889-14538908 | Msa0978500:intron | 30.0% |
| CTATAAGCTACAGAAAAAGA+TGG | - | chr6_4:14538965-14538984 | None:intergenic | 30.0% | |
| ATAATCACATGTGTTAGAGA+CGG | - | chr6_4:14539276-14539295 | None:intergenic | 30.0% | |
| !!! | AGATGGGTTTTATTCTAATG+AGG | + | chr6_4:14539467-14539486 | Msa0978500:intron | 30.0% |
| ACATCGTTTAATGGTGATAT+TGG | + | chr6_4:14539508-14539527 | Msa0978500:intron | 30.0% | |
| TAATGGTGATATTGGAATGA+TGG | + | chr6_4:14539516-14539535 | Msa0978500:intron | 30.0% | |
| AATGGTGATATTGGAATGAT+GGG | + | chr6_4:14539517-14539536 | Msa0978500:intron | 30.0% | |
| ! | TGATCAATTTTGCAGCTTTA+CGG | + | chr6_4:14539543-14539562 | Msa0978500:intron | 30.0% |
| ! | GTTTTCCATTCTTCGGTTTT+TGG | + | chr6_4:14538596-14538615 | Msa0978500:CDS | 35.0% |
| TGAATCCTCAAAGGTTGAAA+TGG | + | chr6_4:14538664-14538683 | Msa0978500:CDS | 35.0% | |
| GAATCCTCAAAGGTTGAAAT+GGG | + | chr6_4:14538665-14538684 | Msa0978500:CDS | 35.0% | |
| !!! | GAAAAAATGGGTTTTGGGTT+AGG | - | chr6_4:14538764-14538783 | None:intergenic | 35.0% |
| ! | TGATAGTGAAATTGATGTGG+TGG | + | chr6_4:14538892-14538911 | Msa0978500:intron | 35.0% |
| GATAGTGAAATTGATGTGGT+GGG | + | chr6_4:14538893-14538912 | Msa0978500:intron | 35.0% | |
| AAAAAGATGGTTGTCCAAAC+GGG | - | chr6_4:14538952-14538971 | None:intergenic | 35.0% | |
| GAAAAAGATGGTTGTCCAAA+CGG | - | chr6_4:14538953-14538972 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGCTATCT+TGG | + | chr6_4:14539073-14539092 | Msa0978500:intron | 35.0% |
| ATCTGAGCTTATCTACTGTT+TGG | - | chr6_4:14539172-14539191 | None:intergenic | 35.0% | |
| ! | GAAATGGATAACGGTATGTT+TGG | - | chr6_4:14539203-14539222 | None:intergenic | 35.0% |
| !!! | TGTGTTTTTGGAAGAAGAGA+TGG | + | chr6_4:14539450-14539469 | Msa0978500:intron | 35.0% |
| !!! | GTGTTTTTGGAAGAAGAGAT+GGG | + | chr6_4:14539451-14539470 | Msa0978500:intron | 35.0% |
| AGCTTTACGGAGTAAAATGA+AGG | + | chr6_4:14539556-14539575 | Msa0978500:intron | 35.0% | |
| AAATATGCTGAGTGTGCTAT+GGG | + | chr6_4:14539614-14539633 | Msa0978500:CDS | 35.0% | |
| ! | TTTCTGTTGTTTGGCAATGT+CGG | + | chr6_4:14539645-14539664 | Msa0978500:CDS | 35.0% |
| ! | GTTTTCCATTCTTCGGTTTT+TGG | + | chr6_4:14538596-14538615 | Msa0978500:CDS | 35.0% |
| TGAATCCTCAAAGGTTGAAA+TGG | + | chr6_4:14538664-14538683 | Msa0978500:CDS | 35.0% | |
| GAATCCTCAAAGGTTGAAAT+GGG | + | chr6_4:14538665-14538684 | Msa0978500:CDS | 35.0% | |
| !!! | GAAAAAATGGGTTTTGGGTT+AGG | - | chr6_4:14538764-14538783 | None:intergenic | 35.0% |
| ! | TGATAGTGAAATTGATGTGG+TGG | + | chr6_4:14538892-14538911 | Msa0978500:intron | 35.0% |
| GATAGTGAAATTGATGTGGT+GGG | + | chr6_4:14538893-14538912 | Msa0978500:intron | 35.0% | |
| AAAAAGATGGTTGTCCAAAC+GGG | - | chr6_4:14538952-14538971 | None:intergenic | 35.0% | |
| GAAAAAGATGGTTGTCCAAA+CGG | - | chr6_4:14538953-14538972 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGCTATCT+TGG | + | chr6_4:14539073-14539092 | Msa0978500:intron | 35.0% |
| ATCTGAGCTTATCTACTGTT+TGG | - | chr6_4:14539172-14539191 | None:intergenic | 35.0% | |
| ! | GAAATGGATAACGGTATGTT+TGG | - | chr6_4:14539203-14539222 | None:intergenic | 35.0% |
| !!! | TGTGTTTTTGGAAGAAGAGA+TGG | + | chr6_4:14539450-14539469 | Msa0978500:intron | 35.0% |
| !!! | GTGTTTTTGGAAGAAGAGAT+GGG | + | chr6_4:14539451-14539470 | Msa0978500:intron | 35.0% |
| AGCTTTACGGAGTAAAATGA+AGG | + | chr6_4:14539556-14539575 | Msa0978500:intron | 35.0% | |
| AAATATGCTGAGTGTGCTAT+GGG | + | chr6_4:14539614-14539633 | Msa0978500:CDS | 35.0% | |
| ! | TTTCTGTTGTTTGGCAATGT+CGG | + | chr6_4:14539645-14539664 | Msa0978500:CDS | 35.0% |
| AACAGCCAAAAACCGAAGAA+TGG | - | chr6_4:14538604-14538623 | None:intergenic | 40.0% | |
| CTGTTCTTCTGAATCCTCAA+AGG | + | chr6_4:14538655-14538674 | Msa0978500:CDS | 40.0% | |
| GTGAAGAAGAAAGTCGAAGA+AGG | + | chr6_4:14538719-14538738 | Msa0978500:CDS | 40.0% | |
| AAAAGATGGTTGTCCAAACG+GGG | - | chr6_4:14538951-14538970 | None:intergenic | 40.0% | |
| ! | ACGCCTTCTATCAAAAGTGT+CGG | - | chr6_4:14539245-14539264 | None:intergenic | 40.0% |
| TCATAGATCAATGTCGTGTC+TGG | + | chr6_4:14539371-14539390 | Msa0978500:intron | 40.0% | |
| ACGGAGTAAAATGAAGGTGA+AGG | + | chr6_4:14539562-14539581 | Msa0978500:CDS | 40.0% | |
| GAAATATGCTGAGTGTGCTA+TGG | + | chr6_4:14539613-14539632 | Msa0978500:CDS | 40.0% | |
| AATATGCTGAGTGTGCTATG+GGG | + | chr6_4:14539615-14539634 | Msa0978500:CDS | 40.0% | |
| GGAGAACACTTTCTGTTGTT+TGG | + | chr6_4:14539636-14539655 | Msa0978500:CDS | 40.0% | |
| CAATGTCGGAAAGTAGCTAA+GGG | + | chr6_4:14539659-14539678 | Msa0978500:CDS | 40.0% | |
| AATGTCGGAAAGTAGCTAAG+GGG | + | chr6_4:14539660-14539679 | Msa0978500:CDS | 40.0% | |
| AACAGCCAAAAACCGAAGAA+TGG | - | chr6_4:14538604-14538623 | None:intergenic | 40.0% | |
| CTGTTCTTCTGAATCCTCAA+AGG | + | chr6_4:14538655-14538674 | Msa0978500:CDS | 40.0% | |
| GTGAAGAAGAAAGTCGAAGA+AGG | + | chr6_4:14538719-14538738 | Msa0978500:CDS | 40.0% | |
| AAAAGATGGTTGTCCAAACG+GGG | - | chr6_4:14538951-14538970 | None:intergenic | 40.0% | |
| ! | ACGCCTTCTATCAAAAGTGT+CGG | - | chr6_4:14539245-14539264 | None:intergenic | 40.0% |
| TCATAGATCAATGTCGTGTC+TGG | + | chr6_4:14539371-14539390 | Msa0978500:intron | 40.0% | |
| ACGGAGTAAAATGAAGGTGA+AGG | + | chr6_4:14539562-14539581 | Msa0978500:CDS | 40.0% | |
| GAAATATGCTGAGTGTGCTA+TGG | + | chr6_4:14539613-14539632 | Msa0978500:CDS | 40.0% | |
| AATATGCTGAGTGTGCTATG+GGG | + | chr6_4:14539615-14539634 | Msa0978500:CDS | 40.0% | |
| GGAGAACACTTTCTGTTGTT+TGG | + | chr6_4:14539636-14539655 | Msa0978500:CDS | 40.0% | |
| CAATGTCGGAAAGTAGCTAA+GGG | + | chr6_4:14539659-14539678 | Msa0978500:CDS | 40.0% | |
| AATGTCGGAAAGTAGCTAAG+GGG | + | chr6_4:14539660-14539679 | Msa0978500:CDS | 40.0% | |
| TCCTCAAAGGTTGAAATGGG+TGG | + | chr6_4:14538668-14538687 | Msa0978500:CDS | 45.0% | |
| ACCACCCATTTCAACCTTTG+AGG | - | chr6_4:14538672-14538691 | None:intergenic | 45.0% | |
| !! | GCACCGACACTTTTGATAGA+AGG | + | chr6_4:14539239-14539258 | Msa0978500:intron | 45.0% |
| CGACATTGACACAGAAACAC+CGG | - | chr6_4:14539328-14539347 | None:intergenic | 45.0% | |
| TTCTGTGTCAATGTCGTGTC+TGG | + | chr6_4:14539332-14539351 | Msa0978500:intron | 45.0% | |
| GCAATGTCGGAAAGTAGCTA+AGG | + | chr6_4:14539658-14539677 | Msa0978500:CDS | 45.0% | |
| TCCTCAAAGGTTGAAATGGG+TGG | + | chr6_4:14538668-14538687 | Msa0978500:CDS | 45.0% | |
| ACCACCCATTTCAACCTTTG+AGG | - | chr6_4:14538672-14538691 | None:intergenic | 45.0% | |
| !! | GCACCGACACTTTTGATAGA+AGG | + | chr6_4:14539239-14539258 | Msa0978500:intron | 45.0% |
| CGACATTGACACAGAAACAC+CGG | - | chr6_4:14539328-14539347 | None:intergenic | 45.0% | |
| TTCTGTGTCAATGTCGTGTC+TGG | + | chr6_4:14539332-14539351 | Msa0978500:intron | 45.0% | |
| GCAATGTCGGAAAGTAGCTA+AGG | + | chr6_4:14539658-14539677 | Msa0978500:CDS | 45.0% | |
| AACAGAACAACCTCAGTCGC+AGG | - | chr6_4:14538640-14538659 | None:intergenic | 50.0% | |
| !!! | ATTGGGTTTTAGGCCCCGTT+TGG | + | chr6_4:14538935-14538954 | Msa0978500:intron | 50.0% |
| GTCGTGTCTGGTGTTTGTGT+CGG | + | chr6_4:14539344-14539363 | Msa0978500:intron | 50.0% | |
| GTCGTGTCTGGTGTTTGTGT+CGG | + | chr6_4:14539344-14539363 | Msa0978500:intron | 50.0% | |
| AACAGAACAACCTCAGTCGC+AGG | - | chr6_4:14538640-14538659 | None:intergenic | 50.0% | |
| !!! | ATTGGGTTTTAGGCCCCGTT+TGG | + | chr6_4:14538935-14538954 | Msa0978500:intron | 50.0% |
| GTCGTGTCTGGTGTTTGTGT+CGG | + | chr6_4:14539344-14539363 | Msa0978500:intron | 50.0% | |
| GTCGTGTCTGGTGTTTGTGT+CGG | + | chr6_4:14539344-14539363 | Msa0978500:intron | 50.0% | |
| ACTTTCAGCTCCTGCGACTG+AGG | + | chr6_4:14538627-14538646 | Msa0978500:CDS | 55.0% | |
| ACTTTCAGCTCCTGCGACTG+AGG | + | chr6_4:14538627-14538646 | Msa0978500:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 14538551 | 14539709 | 14538551 | ID=Msa0978500;Name=Msa0978500 |
| chr6_4 | mRNA | 14538551 | 14539709 | 14538551 | ID=Msa0978500-mRNA-1;Parent=Msa0978500;Name=Msa0978500-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|1|0.5|1|0|0.5|2|0|113 |
| chr6_4 | exon | 14538551 | 14538740 | 14538551 | ID=Msa0978500-mRNA-1:exon:4760;Parent=Msa0978500-mRNA-1 |
| chr6_4 | exon | 14539558 | 14539709 | 14539558 | ID=Msa0978500-mRNA-1:exon:4761;Parent=Msa0978500-mRNA-1 |
| chr6_4 | CDS | 14538551 | 14538740 | 14538551 | ID=Msa0978500-mRNA-1:cds;Parent=Msa0978500-mRNA-1 |
| chr6_4 | CDS | 14539558 | 14539709 | 14539558 | ID=Msa0978500-mRNA-1:cds;Parent=Msa0978500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
