AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081590 MtrunA17_Chr7g0268701 93.396 106 7 0 1 106 1 106 1.25e-68 203
Msa1081590 MtrunA17_Chr7g0224251 52.041 98 45 2 5 101 4 100 3.28e-32 110
Msa1081590 MtrunA17_Chr7g0224241 53.535 99 44 2 5 102 4 101 1.53e-31 115
Msa1081590 MtrunA17_Chr8g0386041 51.546 97 45 2 5 100 4 99 8.15e-31 107
Msa1081590 MtrunA17_Chr7g0218501 45.098 102 52 3 1 99 1 101 2.05e-26 96.3
Msa1081590 MtrunA17_Chr6g0454091 43.750 96 52 2 1 95 1 95 1.68e-24 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081590 AT1G22050.1 54.206 107 47 2 1 106 1 106 9.72e-33 112
Msa1081590 AT4G24990.2 54.082 98 43 2 5 101 4 100 1.68e-32 112
Msa1081590 AT4G24990.1 54.082 98 43 2 5 101 4 100 1.68e-32 112
Msa1081590 AT1G77870.1 51.429 105 47 3 5 106 4 107 1.51e-30 107
Msa1081590 AT3G26980.1 48.889 90 44 2 5 93 4 92 1.57e-26 97.1
Msa1081590 AT3G01050.2 45.545 101 53 2 1 100 1 100 1.61e-25 94.4
Msa1081590 AT3G01050.3 45.545 101 53 2 1 100 1 100 1.61e-25 94.4
Msa1081590 AT3G01050.1 45.545 101 53 2 1 100 1 100 1.61e-25 94.4
Msa1081590 AT3G01050.4 45.545 101 53 2 1 100 1 100 1.61e-25 94.4
Msa1081590 AT3G01050.5 45.545 101 53 2 1 100 1 100 1.61e-25 94.4
Msa1081590 AT5G15460.2 45.745 94 49 2 1 93 1 93 4.25e-25 93.6
Msa1081590 AT5G15460.1 45.745 94 49 2 1 93 1 93 4.25e-25 93.6
Msa1081590 AT5G15460.4 45.745 94 49 2 1 93 1 93 4.25e-25 93.6

Find 109 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTCTTCCTTCCATTAA+TGG 0.118009 7_2:-81412156 Msa1081590:five_prime_UTR
CTCAATTTGTTATAGTAGTT+TGG 0.204335 7_2:+81408437 None:intergenic
GTCCATTTAGTTTCTAATTC+AGG 0.226462 7_2:+81408460 None:intergenic
ATCATGGAAAACTCATTTAA+TGG 0.236892 7_2:-81408650 Msa1081590:three_prime_UTR
TTGTTATAGTATTTGACTTA+TGG 0.250553 7_2:-81408519 Msa1081590:three_prime_UTR
TATACATGCCGGTAAAGTTT+TGG 0.253058 7_2:-81410513 Msa1081590:CDS
GTCCTGAATTAGAAACTAAA+TGG 0.275519 7_2:-81408462 Msa1081590:three_prime_UTR
ACGAGCATATCTTATCAAAA+TGG 0.277479 7_2:-81408846 Msa1081590:three_prime_UTR
CCTGGTCAAGAAGCCATTAA+TGG 0.305953 7_2:+81412143 None:intergenic
CAGCTCTGCAAGCTTATTAG+AGG 0.310468 7_2:-81411560 Msa1081590:five_prime_UTR
CATATCTAGTAAGGATTGTT+TGG 0.316186 7_2:-81411838 Msa1081590:five_prime_UTR
AGCAAAATCATACATATAGA+AGG 0.316655 7_2:+81408905 None:intergenic
TGACCTCAACAAGTTCAATA+AGG 0.322868 7_2:-81409042 Msa1081590:three_prime_UTR
CATCCTCCAGAGTTGAAAAT+AGG 0.324075 7_2:+81409207 None:intergenic
TCAATTTGTTATAGTAGTTT+GGG 0.331819 7_2:+81408438 None:intergenic
TGTTGTTGGATCAAACGATA+TGG 0.354495 7_2:+81411596 None:intergenic
GGATTGTTTGGAGAAGTAAT+TGG 0.354684 7_2:-81411826 Msa1081590:five_prime_UTR
GATGTCACCGATAGTTATTC+TGG 0.356930 7_2:+81410466 None:intergenic
GCAAAACGATACTTTGTTGT+TGG 0.360149 7_2:+81411582 None:intergenic
GTGTGACTCTGAGGGAAATA+TGG 0.361386 7_2:+81411718 None:intergenic
AAGTTCAATAAGGGTGTTGC+AGG 0.364452 7_2:-81409032 Msa1081590:three_prime_UTR
ACGTCTTTATGCAATACTAT+TGG 0.367265 7_2:+81409164 None:intergenic
ATTGTTTCCCAAAACTTTAC+CGG 0.367696 7_2:+81410505 None:intergenic
ATATGAGGTGTTCATTTAGT+TGG 0.372924 7_2:-81411800 Msa1081590:five_prime_UTR
TTTATATCATTAACTGACTT+TGG 0.374715 7_2:+81410539 None:intergenic
TTCCATGATAGAATTTGTTT+CGG 0.380223 7_2:+81408664 None:intergenic
TCGATGAATGGATATTTGTT+TGG 0.384877 7_2:-81408959 Msa1081590:three_prime_UTR
ATAAGTATCGTGTGCTATAT+CGG 0.397404 7_2:+81411470 None:intergenic
CCATATACTGCTTTAGCAAA+AGG 0.404292 7_2:+81410363 None:intergenic
CCATTAATGGCTTCTTGACC+AGG 0.410829 7_2:-81412143 Msa1081590:intron
TATGGTTATTAGAAGAAGCT+TGG 0.411702 7_2:+81411736 None:intergenic
GCTATCCATGAAGGAGGATT+AGG 0.412621 7_2:-81408704 Msa1081590:three_prime_UTR
AAATTGCAACCTTCTCTTCA+AGG 0.416906 7_2:+81409231 None:intergenic
ATCCGAAACAAATTCTATCA+TGG 0.423737 7_2:-81408666 Msa1081590:three_prime_UTR
AAGTTCCTAATCCTCCTTCA+TGG 0.432867 7_2:+81408699 None:intergenic
GAATCCGAGTTTGCAAGCAT+TGG 0.433534 7_2:-81412588 Msa1081590:five_prime_UTR
CTTAAATTCCGCATATATGA+TGG 0.442986 7_2:-81411495 Msa1081590:CDS
CATATACTGCTTTAGCAAAA+GGG 0.444914 7_2:+81410364 None:intergenic
GTCTTCTCTACAGATTTGTA+AGG 0.449793 7_2:-81408626 Msa1081590:three_prime_UTR
CGAGCATATCTTATCAAAAT+GGG 0.451557 7_2:-81408845 Msa1081590:three_prime_UTR
AAACCCAATGCTTGCAAACT+CGG 0.456957 7_2:+81412584 None:intergenic
AATCCGAGTTTGCAAGCATT+GGG 0.462921 7_2:-81412587 Msa1081590:five_prime_UTR
AGGTATGCTTTCTAATCTAT+AGG 0.469324 7_2:+81409263 None:intergenic
ATATAGCAACTCATGGTTTG+TGG 0.471114 7_2:+81409009 None:intergenic
AATATCCATTCATCGAATGC+TGG 0.474784 7_2:+81408966 None:intergenic
TGAACATCTGAATTGATGAT+AGG 0.475872 7_2:+81411765 None:intergenic
GACCTCAACAAGTTCAATAA+GGG 0.477797 7_2:-81409041 Msa1081590:three_prime_UTR
TTGCAGTGACATATCTAGTA+AGG 0.479322 7_2:-81411847 Msa1081590:intron
TTAAGCATTAGCATTTCAAA+TGG 0.479564 7_2:+81408592 None:intergenic
ATATCCATTCATCGAATGCT+GGG 0.480142 7_2:+81408967 None:intergenic
GATAGCGGTTACTACAGTAC+TGG 0.480484 7_2:+81412499 None:intergenic
TGTTGTAGTTGTATTAAAGA+AGG 0.485533 7_2:+81412195 None:intergenic
AACTCTGGAGGATGATGTAT+AGG 0.488590 7_2:-81409198 Msa1081590:three_prime_UTR
GCAAAATCATACATATAGAA+GGG 0.510535 7_2:+81408906 None:intergenic
CACCCTTATTGAACTTGTTG+AGG 0.511598 7_2:+81409039 None:intergenic
CACGCAAAGAATAATAGCGC+AGG 0.516527 7_2:-81412639 Msa1081590:five_prime_UTR
CCCACAGTTGTAGTAGATGC+TGG 0.521425 7_2:+81411447 None:intergenic
AATTGCAACCTTCTCTTCAA+GGG 0.523306 7_2:+81409232 None:intergenic
CAAAATCATACATATAGAAG+GGG 0.524112 7_2:+81408907 None:intergenic
CAAAATGGGTTGGCTTAGTG+TGG 0.527704 7_2:-81408831 Msa1081590:three_prime_UTR
TGGAATTATATAGCAACTCA+TGG 0.530728 7_2:+81409002 None:intergenic
TGTGGCTGCCCTTGAAGAGA+AGG 0.534376 7_2:-81409240 Msa1081590:exon
GAGGTGGACTTAGATTATCA+TGG 0.536220 7_2:-81411541 Msa1081590:exon
ATAACTATCGGTGACATCCC+TGG 0.538324 7_2:-81410461 Msa1081590:CDS
AGAAGTAATTGGATCATATG+AGG 0.542913 7_2:-81411815 Msa1081590:five_prime_UTR
CTCTGCAAGCTTATTAGAGG+TGG 0.545020 7_2:-81411557 Msa1081590:five_prime_UTR
TCCAGCATCTACTACAACTG+TGG 0.553859 7_2:-81411448 Msa1081590:CDS
CTGATTGCCGACTGGCCTCA+AGG 0.554550 7_2:-81411408 Msa1081590:intron
CATATCTTATCAAAATGGGT+TGG 0.560215 7_2:-81408841 Msa1081590:three_prime_UTR
AGCAAAAGCTGATTGCCGAC+TGG 0.562829 7_2:-81411416 Msa1081590:CDS
GATTATCATGGCAGAAGGAG+AGG 0.569094 7_2:-81411529 Msa1081590:exon
ACTTCGTTAGTGTTTGAACC+AGG 0.574142 7_2:+81408758 None:intergenic
CTATATAATTCCAGCTCATG+CGG 0.576816 7_2:-81408992 Msa1081590:three_prime_UTR
AAGTCGAATACTCTAATAGT+CGG 0.579374 7_2:+81408554 None:intergenic
AAATATGTACAAGGATACCA+TGG 0.579408 7_2:-81408784 Msa1081590:three_prime_UTR
ACATGCATGGTAATAGCACC+AGG 0.585413 7_2:+81410443 None:intergenic
GATATAAAGCTTATACATGC+CGG 0.585880 7_2:-81410524 Msa1081590:CDS
GAAGGAGGATTAGGAACTTG+CGG 0.586321 7_2:-81408695 Msa1081590:three_prime_UTR
AGAAAAGTCACGAGATGAGA+CGG 0.588995 7_2:+81412525 None:intergenic
TAACGAAGTTACATGAGAAG+AGG 0.593786 7_2:-81408744 Msa1081590:three_prime_UTR
AACCTACCTGTGTGACTCTG+AGG 0.599895 7_2:+81411709 None:intergenic
TGACTAACCTTGAGGCCAGT+CGG 0.600792 7_2:+81411401 None:intergenic
GTCAAGAAGCCATTAATGGA+AGG 0.607434 7_2:+81412147 None:intergenic
ACTTAGATTATCATGGCAGA+AGG 0.615684 7_2:-81411534 Msa1081590:exon
ACCTACCTGTGTGACTCTGA+GGG 0.618106 7_2:+81411710 None:intergenic
AACGAAGTTACATGAGAAGA+GGG 0.623414 7_2:-81408743 Msa1081590:three_prime_UTR
ACTGTGGACAAATATGTACA+AGG 0.623458 7_2:-81408793 Msa1081590:three_prime_UTR
GCTGAGTCCAGAATAACTAT+CGG 0.626227 7_2:-81410473 Msa1081590:CDS
TCTCTTCAAGGGCAGCCACA+AGG 0.628677 7_2:+81409243 None:intergenic
AATATGTACAAGGATACCAT+GGG 0.632800 7_2:-81408783 Msa1081590:three_prime_UTR
ATAGCGGTTACTACAGTACT+GGG 0.632849 7_2:+81412500 None:intergenic
AAAATCGCTATCCATGAAGG+AGG 0.644325 7_2:-81408710 Msa1081590:three_prime_UTR
CCAGCATCTACTACAACTGT+GGG 0.646201 7_2:-81411447 Msa1081590:CDS
TATCCATTCATCGAATGCTG+GGG 0.646202 7_2:+81408968 None:intergenic
AAAATCATACATATAGAAGG+GGG 0.647230 7_2:+81408908 None:intergenic
AGGCTGTACTACAACATGCA+TGG 0.647401 7_2:+81410430 None:intergenic
ATCCATTCATCGAATGCTGG+GGG 0.650282 7_2:+81408969 None:intergenic
TATCGGTTCCATCATATATG+CGG 0.654172 7_2:+81411487 None:intergenic
TGTCCACAGTTAATCTAACG+AGG 0.657086 7_2:+81408806 None:intergenic
AAATCATACATATAGAAGGG+GGG 0.678327 7_2:+81408909 None:intergenic
CTATGCAACACACATTGACG+TGG 0.683677 7_2:-81412613 Msa1081590:five_prime_UTR
TATTTCCCTCAGAGTCACAC+AGG 0.685777 7_2:-81411715 Msa1081590:intron
GAACCTCGTTAGATTAACTG+TGG 0.686266 7_2:-81408809 Msa1081590:three_prime_UTR
ACTACAGTAGAGATAGATAG+CGG 0.699277 7_2:+81412484 None:intergenic
ACATCTGAATTGATGATAGG+TGG 0.699453 7_2:+81411768 None:intergenic
AGATTAGAAAGCATACCTTG+TGG 0.715472 7_2:-81409258 Msa1081590:CDS
ATATGTACAAGGATACCATG+GGG 0.743089 7_2:-81408782 Msa1081590:three_prime_UTR
CATGCATGGTAATAGCACCA+GGG 0.763518 7_2:+81410444 None:intergenic
TATGTACAAGGATACCATGG+GGG 0.774208 7_2:-81408781 Msa1081590:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATGTATTTTTTCTTAT+TGG + chr7_2:81410416-81410435 None:intergenic 10.0%
!! CATATTAGTATATAATAATT+TGG - chr7_2:81410769-81410788 Msa1081590:intron 10.0%
!!! AAAATTATATTTAAGTTTTG+TGG - chr7_2:81411063-81411082 Msa1081590:intron 10.0%
!!! AAATTATATTTAAGTTTTGT+GGG - chr7_2:81411064-81411083 Msa1081590:intron 10.0%
!!! TAAGCAAAAAATTACTTTTT+AGG - chr7_2:81408636-81408655 Msa1081590:three_prime_UTR 15.0%
!!! TTCTTTAGATTCTTTAATTT+CGG - chr7_2:81409043-81409062 Msa1081590:three_prime_UTR 15.0%
!!! GATTTGATGTTAATTTTTTT+TGG - chr7_2:81409864-81409883 Msa1081590:intron 15.0%
!! AAAACAATGATTAAGTAAAA+AGG + chr7_2:81409994-81410013 None:intergenic 15.0%
!!! TGTGAGTATATTTTATTTTT+TGG + chr7_2:81410331-81410350 None:intergenic 15.0%
!!! TTTGGAAATATAATTTTAAG+TGG - chr7_2:81410787-81410806 Msa1081590:intron 15.0%
!!! TTTATATATACATCTTTTAC+AGG + chr7_2:81411360-81411379 None:intergenic 15.0%
!! AATTGTAATTTAGCAAGAAA+AGG + chr7_2:81409003-81409022 None:intergenic 20.0%
!!! TTGATGTTAATTTTTTTTGG+AGG - chr7_2:81409867-81409886 Msa1081590:intron 20.0%
!!! CATTGTTTTTTTTTTCCTTA+TGG - chr7_2:81410005-81410024 Msa1081590:intron 20.0%
!! ACAACAATGATTCAATATAA+AGG + chr7_2:81410034-81410053 None:intergenic 20.0%
!!! TGTATTTTTTCTTATTGGTA+CGG + chr7_2:81410411-81410430 None:intergenic 20.0%
!! AGAAAATGAAAAACTATTTG+TGG + chr7_2:81410453-81410472 None:intergenic 20.0%
!!! TTTATATCATTAACTGACTT+TGG + chr7_2:81410541-81410560 None:intergenic 20.0%
!!! GAAATATAATTTTAAGTGGT+TGG - chr7_2:81410791-81410810 Msa1081590:intron 20.0%
!! CTAATAACTAATTAGTTGAT+CGG + chr7_2:81410957-81410976 None:intergenic 20.0%
!! ATCAACTAATTAGTTATTAG+AGG - chr7_2:81410957-81410976 Msa1081590:intron 20.0%
!! TTCAACTAACATATAATGTA+TGG - chr7_2:81411214-81411233 Msa1081590:intron 20.0%
!! TCAACTAACATATAATGTAT+GGG - chr7_2:81411215-81411234 Msa1081590:intron 20.0%
!!! CATTTAATTTCGTTTATTGT+AGG - chr7_2:81411259-81411278 Msa1081590:intron 20.0%
!! AATATAGCAATATATCACTT+AGG + chr7_2:81411713-81411732 None:intergenic 20.0%
!!! TTTGGAAGTGTATATTTTTA+GGG - chr7_2:81412136-81412155 Msa1081590:intron 20.0%
!!! TTGTTATAGTATTTGACTTA+TGG - chr7_2:81412558-81412577 Msa1081590:five_prime_UTR 20.0%
!! TTTTTGCTTATAATAGTGAC+TGG + chr7_2:81408735-81408754 None:intergenic 25.0%
! ATGTATGTGGTCTATATTAA+TGG + chr7_2:81408687-81408706 None:intergenic 25.0%
! CATTGAATAAATGATGTATG+TGG + chr7_2:81408700-81408719 None:intergenic 25.0%
! ATTCAATGAACCTAAAAAGT+AGG - chr7_2:81408712-81408731 Msa1081590:three_prime_UTR 25.0%
!!! TAAGCAAAAACCTACTTTTT+AGG + chr7_2:81408725-81408744 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr7_2:81408735-81408754 Msa1081590:three_prime_UTR 25.0%
! TGTTGTAGTTGTATTAAAGA+AGG + chr7_2:81408885-81408904 None:intergenic 25.0%
! TCAATATAAAGGAATCCATA+AGG + chr7_2:81410023-81410042 None:intergenic 25.0%
! AAAAAATAGTTGGATACAGT+CGG + chr7_2:81410127-81410146 None:intergenic 25.0%
! ATGCAGCAAAAAAAAATAGT+TGG + chr7_2:81410137-81410156 None:intergenic 25.0%
! ATGCTTCATGGAAATTAATA+GGG + chr7_2:81410190-81410209 None:intergenic 25.0%
!!! AACTTTTAATTGATGCTTCA+TGG + chr7_2:81410202-81410221 None:intergenic 25.0%
! GAAAAACTATTTGTGGATAA+TGG + chr7_2:81410446-81410465 None:intergenic 25.0%
! TTTGTTGAAAATTTCAGAGT+TGG + chr7_2:81410844-81410863 None:intergenic 25.0%
!! CAAATATTGTTCCATCTTTT+GGG + chr7_2:81410896-81410915 None:intergenic 25.0%
!! TCAAATATTGTTCCATCTTT+TGG + chr7_2:81410897-81410916 None:intergenic 25.0%
! AGTTAAATGAAAAAGACTAC+TGG + chr7_2:81411404-81411423 None:intergenic 25.0%
! ACTACACATAAATCACTAAA+TGG + chr7_2:81411657-81411676 None:intergenic 25.0%
!! AATTTTCCTATTTTCAACTC+TGG - chr7_2:81411864-81411883 Msa1081590:intron 25.0%
!!! GTTTGGAAGTGTATATTTTT+AGG - chr7_2:81412135-81412154 Msa1081590:intron 25.0%
!!! TTGGAAGTGTATATTTTTAG+GGG - chr7_2:81412137-81412156 Msa1081590:intron 25.0%
! AAAATCATACATATAGAAGG+GGG + chr7_2:81412172-81412191 None:intergenic 25.0%
! CAAAATCATACATATAGAAG+GGG + chr7_2:81412173-81412192 None:intergenic 25.0%
! GCAAAATCATACATATAGAA+GGG + chr7_2:81412174-81412193 None:intergenic 25.0%
! AGCAAAATCATACATATAGA+AGG + chr7_2:81412175-81412194 None:intergenic 25.0%
!! TTCTATATGTATGATTTTGC+TGG - chr7_2:81412174-81412193 Msa1081590:five_prime_UTR 25.0%
!! TTCCATGATAGAATTTGTTT+CGG + chr7_2:81412416-81412435 None:intergenic 25.0%
! ATCATGGAAAACTCATTTAA+TGG - chr7_2:81412427-81412446 Msa1081590:intron 25.0%
! TTAAGCATTAGCATTTCAAA+TGG + chr7_2:81412488-81412507 None:intergenic 25.0%
! GTGATTTTATTCTCTGCAAA+CGG + chr7_2:81408529-81408548 None:intergenic 30.0%
GAAATGAAAAAGATGATACC+TGG + chr7_2:81408955-81408974 None:intergenic 30.0%
! TTTAATTTCGGTTCCAATCT+AGG - chr7_2:81409055-81409074 Msa1081590:three_prime_UTR 30.0%
TTAATTTCGGTTCCAATCTA+GGG - chr7_2:81409056-81409075 Msa1081590:three_prime_UTR 30.0%
TGAATTACTAAACCCTAGAT+TGG + chr7_2:81409071-81409090 None:intergenic 30.0%
CATATCTAGTAAGGATTGTT+TGG - chr7_2:81409239-81409258 Msa1081590:exon 30.0%
AGAAGTAATTGGATCATATG+AGG - chr7_2:81409262-81409281 Msa1081590:CDS 30.0%
! ATATGAGGTGTTCATTTAGT+TGG - chr7_2:81409277-81409296 Msa1081590:CDS 30.0%
! TGAACATCTGAATTGATGAT+AGG + chr7_2:81409315-81409334 None:intergenic 30.0%
TATGGTTATTAGAAGAAGCT+TGG + chr7_2:81409344-81409363 None:intergenic 30.0%
ATAATTGAATTGCGAGTACA+TGG - chr7_2:81409410-81409429 Msa1081590:intron 30.0%
CTTAAATTCCGCATATATGA+TGG - chr7_2:81409582-81409601 Msa1081590:intron 30.0%
! ATAAGTATCGTGTGCTATAT+CGG + chr7_2:81409610-81409629 None:intergenic 30.0%
GTACACACTTAACATTAACT+CGG + chr7_2:81409894-81409913 None:intergenic 30.0%
! AAAAGACTGAACTAGTGTTT+TGG + chr7_2:81409925-81409944 None:intergenic 30.0%
!!! TTTTTTTTGCTGCATAGTTG+AGG - chr7_2:81410142-81410161 Msa1081590:intron 30.0%
GATGCTTCATGGAAATTAAT+AGG + chr7_2:81410191-81410210 None:intergenic 30.0%
AAAGATTGCACTAAATGGTA+AGG + chr7_2:81410495-81410514 None:intergenic 30.0%
AAACGAAAGATTGCACTAAA+TGG + chr7_2:81410500-81410519 None:intergenic 30.0%
GATATAAAGCTTATACATGC+CGG - chr7_2:81410553-81410572 Msa1081590:CDS 30.0%
ATTGTTTCCCAAAACTTTAC+CGG + chr7_2:81410575-81410594 None:intergenic 30.0%
CATATACTGCTTTAGCAAAA+GGG + chr7_2:81410716-81410735 None:intergenic 30.0%
! TATTTGACAGCAGAGTTTTA+GGG - chr7_2:81411126-81411145 Msa1081590:intron 30.0%
AGATTGACAAAAGTTGACAA+GGG + chr7_2:81411315-81411334 None:intergenic 30.0%
ACATTAAAAATGCGTCTCAA+AGG + chr7_2:81411682-81411701 None:intergenic 30.0%
AGGTATGCTTTCTAATCTAT+AGG + chr7_2:81411817-81411836 None:intergenic 30.0%
ACGTCTTTATGCAATACTAT+TGG + chr7_2:81411916-81411935 None:intergenic 30.0%
TGGAATTATATAGCAACTCA+TGG + chr7_2:81412078-81412097 None:intergenic 30.0%
TCGATGAATGGATATTTGTT+TGG - chr7_2:81412118-81412137 Msa1081590:intron 30.0%
!!! TGGAAGTGTATATTTTTAGG+GGG - chr7_2:81412138-81412157 Msa1081590:intron 30.0%
AAATCATACATATAGAAGGG+GGG + chr7_2:81412171-81412190 None:intergenic 30.0%
! TATATGTATGATTTTGCTGG+TGG - chr7_2:81412177-81412196 Msa1081590:five_prime_UTR 30.0%
!! ATTTTGATAAGATATGCTCG+TGG + chr7_2:81412232-81412251 None:intergenic 30.0%
ACGAGCATATCTTATCAAAA+TGG - chr7_2:81412231-81412250 Msa1081590:five_prime_UTR 30.0%
CGAGCATATCTTATCAAAAT+GGG - chr7_2:81412232-81412251 Msa1081590:five_prime_UTR 30.0%
CATATCTTATCAAAATGGGT+TGG - chr7_2:81412236-81412255 Msa1081590:five_prime_UTR 30.0%
AAATATGTACAAGGATACCA+TGG - chr7_2:81412293-81412312 Msa1081590:five_prime_UTR 30.0%
AATATGTACAAGGATACCAT+GGG - chr7_2:81412294-81412313 Msa1081590:five_prime_UTR 30.0%
TTAAAAATCGCTATCCATGA+AGG - chr7_2:81412364-81412383 Msa1081590:intron 30.0%
ATCCGAAACAAATTCTATCA+TGG - chr7_2:81412411-81412430 Msa1081590:intron 30.0%
AAGTCGAATACTCTAATAGT+CGG + chr7_2:81412526-81412545 None:intergenic 30.0%
GTCCTGAATTAGAAACTAAA+TGG - chr7_2:81412615-81412634 Msa1081590:five_prime_UTR 30.0%
! GTCCATTTAGTTTCTAATTC+AGG + chr7_2:81412620-81412639 None:intergenic 30.0%
ACTACAGTAGAGATAGATAG+CGG + chr7_2:81408596-81408615 None:intergenic 35.0%
TGCTTATAATAGTGACTGGA+GGG + chr7_2:81408622-81408641 None:intergenic 35.0%
TTGCTTATAATAGTGACTGG+AGG + chr7_2:81408623-81408642 None:intergenic 35.0%
CTCATTCTTCCTTCCATTAA+TGG - chr7_2:81408921-81408940 Msa1081590:three_prime_UTR 35.0%
TTGCAGTGACATATCTAGTA+AGG - chr7_2:81409230-81409249 Msa1081590:exon 35.0%
GGATTGTTTGGAGAAGTAAT+TGG - chr7_2:81409251-81409270 Msa1081590:CDS 35.0%
! ACATCTGAATTGATGATAGG+TGG + chr7_2:81409312-81409331 None:intergenic 35.0%
TGTTGTTGGATCAAACGATA+TGG + chr7_2:81409484-81409503 None:intergenic 35.0%
! GCAAAACGATACTTTGTTGT+TGG + chr7_2:81409498-81409517 None:intergenic 35.0%
ACTTAGATTATCATGGCAGA+AGG - chr7_2:81409543-81409562 Msa1081590:intron 35.0%
!! TATCGGTTCCATCATATATG+CGG + chr7_2:81409593-81409612 None:intergenic 35.0%
CGGCTTAAAATGAGTTCTTA+TGG + chr7_2:81410081-81410100 None:intergenic 35.0%
CCAAAAGGTAGGTATAGTAT+CGG + chr7_2:81410101-81410120 None:intergenic 35.0%
TCATGGAAATTAATAGGGCA+AGG + chr7_2:81410185-81410204 None:intergenic 35.0%
CGTGCATTTCTGTAACTAAA+AGG + chr7_2:81410254-81410273 None:intergenic 35.0%
CAAGTAGAGCTACAGAAAAA+CGG + chr7_2:81410277-81410296 None:intergenic 35.0%
TAAATGGTAAGGCAAACATG+TGG + chr7_2:81410484-81410503 None:intergenic 35.0%
TAGTGCAATCTTTCGTTTAC+AGG - chr7_2:81410502-81410521 Msa1081590:CDS 35.0%
! TATACATGCCGGTAAAGTTT+TGG - chr7_2:81410564-81410583 Msa1081590:intron 35.0%
! ATACATGCCGGTAAAGTTTT+GGG - chr7_2:81410565-81410584 Msa1081590:intron 35.0%
CCATATACTGCTTTAGCAAA+AGG + chr7_2:81410717-81410736 None:intergenic 35.0%
! CCTTTTGCTAAAGCAGTATA+TGG - chr7_2:81410714-81410733 Msa1081590:intron 35.0%
TAATATGCAATTCCTGTACC+AGG + chr7_2:81410756-81410775 None:intergenic 35.0%
TAAGCAAAACTCCCAAAAGA+TGG - chr7_2:81410882-81410901 Msa1081590:intron 35.0%
GCTTGTTCAATATATACCCA+AGG - chr7_2:81411103-81411122 Msa1081590:intron 35.0%
! GTATTTGACAGCAGAGTTTT+AGG - chr7_2:81411125-81411144 Msa1081590:intron 35.0%
!! ATTTGACAGCAGAGTTTTAG+GGG - chr7_2:81411127-81411146 Msa1081590:intron 35.0%
TAGTCAGTACAAGTACTACT+TGG + chr7_2:81411184-81411203 None:intergenic 35.0%
ATTGACAAAAGTTGACAAGG+GGG + chr7_2:81411313-81411332 None:intergenic 35.0%
GATTGACAAAAGTTGACAAG+GGG + chr7_2:81411314-81411333 None:intergenic 35.0%
CAGATTGACAAAAGTTGACA+AGG + chr7_2:81411316-81411335 None:intergenic 35.0%
! TTTTTCATGTGCTTTTCCCT+TGG - chr7_2:81411731-81411750 Msa1081590:five_prime_UTR 35.0%
! AGATTAGAAAGCATACCTTG+TGG - chr7_2:81411819-81411838 Msa1081590:five_prime_UTR 35.0%
AATTGCAACCTTCTCTTCAA+GGG + chr7_2:81411848-81411867 None:intergenic 35.0%
AAATTGCAACCTTCTCTTCA+AGG + chr7_2:81411849-81411868 None:intergenic 35.0%
! TTTCCTATTTTCAACTCTGG+AGG - chr7_2:81411867-81411886 Msa1081590:intron 35.0%
TGACCTCAACAAGTTCAATA+AGG - chr7_2:81412035-81412054 Msa1081590:intron 35.0%
GACCTCAACAAGTTCAATAA+GGG - chr7_2:81412036-81412055 Msa1081590:intron 35.0%
ATATAGCAACTCATGGTTTG+TGG + chr7_2:81412071-81412090 None:intergenic 35.0%
CTATATAATTCCAGCTCATG+CGG - chr7_2:81412085-81412104 Msa1081590:intron 35.0%
ATATCCATTCATCGAATGCT+GGG + chr7_2:81412113-81412132 None:intergenic 35.0%
AATATCCATTCATCGAATGC+TGG + chr7_2:81412114-81412133 None:intergenic 35.0%
!!! GGAAGTGTATATTTTTAGGG+GGG - chr7_2:81412139-81412158 Msa1081590:intron 35.0%
!!! GAAGTGTATATTTTTAGGGG+GGG - chr7_2:81412140-81412159 Msa1081590:intron 35.0%
ACTGTGGACAAATATGTACA+AGG - chr7_2:81412284-81412303 Msa1081590:five_prime_UTR 35.0%
ATATGTACAAGGATACCATG+GGG - chr7_2:81412295-81412314 Msa1081590:five_prime_UTR 35.0%
TAACGAAGTTACATGAGAAG+AGG - chr7_2:81412333-81412352 Msa1081590:intron 35.0%
AACGAAGTTACATGAGAAGA+GGG - chr7_2:81412334-81412353 Msa1081590:intron 35.0%
GTCTTCTCTACAGATTTGTA+AGG - chr7_2:81412451-81412470 Msa1081590:intron 35.0%
AATCCGAGTTTGCAAGCATT+GGG - chr7_2:81408490-81408509 Msa1081590:three_prime_UTR 40.0%
AAACCCAATGCTTGCAAACT+CGG + chr7_2:81408496-81408515 None:intergenic 40.0%
AGAAAAGTCACGAGATGAGA+CGG + chr7_2:81408555-81408574 None:intergenic 40.0%
ATAGCGGTTACTACAGTACT+GGG + chr7_2:81408580-81408599 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr7_2:81408738-81408757 Msa1081590:three_prime_UTR 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr7_2:81408739-81408758 Msa1081590:three_prime_UTR 40.0%
GTCAAGAAGCCATTAATGGA+AGG + chr7_2:81408933-81408952 None:intergenic 40.0%
TGAATTGCGAGTACATGGAT+TGG - chr7_2:81409415-81409434 Msa1081590:intron 40.0%
!! AGTACATGGATTGGAGTTGA+TGG - chr7_2:81409424-81409443 Msa1081590:intron 40.0%
! AATTCTTTTGCAGGTGAGCA+AGG - chr7_2:81409453-81409472 Msa1081590:intron 40.0%
! GAGGTGGACTTAGATTATCA+TGG - chr7_2:81409536-81409555 Msa1081590:intron 40.0%
! GGCAATCAGCTTTTGCTTAA+GGG + chr7_2:81409658-81409677 None:intergenic 40.0%
! TCAAGGTTAGTCATCTTGGT+GGG - chr7_2:81409686-81409705 Msa1081590:intron 40.0%
TGATGCCTTTCACAACAATC+TGG - chr7_2:81409747-81409766 Msa1081590:intron 40.0%
GATCACCAGATTGTTGTGAA+AGG + chr7_2:81409755-81409774 None:intergenic 40.0%
! CCGATACTATACCTACCTTT+TGG - chr7_2:81410098-81410117 Msa1081590:intron 40.0%
TTTGGCTGAACAAGTGAGAT+GGG + chr7_2:81410313-81410332 None:intergenic 40.0%
!! TTTTGGCTGAACAAGTGAGA+TGG + chr7_2:81410314-81410333 None:intergenic 40.0%
GCTGAGTCCAGAATAACTAT+CGG - chr7_2:81410604-81410623 Msa1081590:intron 40.0%
GATGTCACCGATAGTTATTC+TGG + chr7_2:81410614-81410633 None:intergenic 40.0%
!!! GTCTTCTTTTTAGCTACAGG+AGG + chr7_2:81410670-81410689 None:intergenic 40.0%
!!! CCTGTCTTCTTTTTAGCTAC+AGG + chr7_2:81410673-81410692 None:intergenic 40.0%
CCTGTAGCTAAAAAGAAGAC+AGG - chr7_2:81410670-81410689 Msa1081590:intron 40.0%
! ATTGAACAAGCATTGCAACG+AGG + chr7_2:81411094-81411113 None:intergenic 40.0%
ACTCTGCTGTCAAATACCTT+GGG + chr7_2:81411122-81411141 None:intergenic 40.0%
AACTCTGCTGTCAAATACCT+TGG + chr7_2:81411123-81411142 None:intergenic 40.0%
!!! TTTGACAGCAGAGTTTTAGG+GGG - chr7_2:81411128-81411147 Msa1081590:intron 40.0%
TGTATGTCTGTGCACTTGAA+AGG + chr7_2:81411452-81411471 None:intergenic 40.0%
AAATAGTCTGTGCACTTGAC+AGG + chr7_2:81411477-81411496 None:intergenic 40.0%
CATCCTCCAGAGTTGAAAAT+AGG + chr7_2:81411873-81411892 None:intergenic 40.0%
! AACTCTGGAGGATGATGTAT+AGG - chr7_2:81411879-81411898 Msa1081590:intron 40.0%
!! CACCCTTATTGAACTTGTTG+AGG + chr7_2:81412041-81412060 None:intergenic 40.0%
!! AAGTTCAATAAGGGTGTTGC+AGG - chr7_2:81412045-81412064 Msa1081590:intron 40.0%
TATCCATTCATCGAATGCTG+GGG + chr7_2:81412112-81412131 None:intergenic 40.0%
GAACCTCGTTAGATTAACTG+TGG - chr7_2:81412268-81412287 Msa1081590:five_prime_UTR 40.0%
TGTCCACAGTTAATCTAACG+AGG + chr7_2:81412274-81412293 None:intergenic 40.0%
TATGTACAAGGATACCATGG+GGG - chr7_2:81412296-81412315 Msa1081590:five_prime_UTR 40.0%
ACTTCGTTAGTGTTTGAACC+AGG + chr7_2:81412322-81412341 None:intergenic 40.0%
AAAATCGCTATCCATGAAGG+AGG - chr7_2:81412367-81412386 Msa1081590:intron 40.0%
AAGTTCCTAATCCTCCTTCA+TGG + chr7_2:81412381-81412400 None:intergenic 40.0%
CTATGCAACACACATTGACG+TGG - chr7_2:81408464-81408483 Msa1081590:three_prime_UTR 45.0%
GAATCCGAGTTTGCAAGCAT+TGG - chr7_2:81408489-81408508 Msa1081590:three_prime_UTR 45.0%
! GATAGCGGTTACTACAGTAC+TGG + chr7_2:81408581-81408600 None:intergenic 45.0%
ACACTAAACAGTACTCCCTC+CGG + chr7_2:81408757-81408776 None:intergenic 45.0%
CCTGGTCAAGAAGCCATTAA+TGG + chr7_2:81408937-81408956 None:intergenic 45.0%
CCATTAATGGCTTCTTGACC+AGG - chr7_2:81408934-81408953 Msa1081590:three_prime_UTR 45.0%
! GTGTGACTCTGAGGGAAATA+TGG + chr7_2:81409362-81409381 None:intergenic 45.0%
TATTTCCCTCAGAGTCACAC+AGG - chr7_2:81409362-81409381 Msa1081590:intron 45.0%
!! ATGGATTGGAGTTGATGGAG+TGG - chr7_2:81409429-81409448 Msa1081590:intron 45.0%
!! TGGATTGGAGTTGATGGAGT+GGG - chr7_2:81409430-81409449 Msa1081590:intron 45.0%
! TGGAGTGGGAATTCTTTTGC+AGG - chr7_2:81409444-81409463 Msa1081590:intron 45.0%
CAGCTCTGCAAGCTTATTAG+AGG - chr7_2:81409517-81409536 Msa1081590:intron 45.0%
CTCTGCAAGCTTATTAGAGG+TGG - chr7_2:81409520-81409539 Msa1081590:intron 45.0%
GATTATCATGGCAGAAGGAG+AGG - chr7_2:81409548-81409567 Msa1081590:intron 45.0%
TCCAGCATCTACTACAACTG+TGG - chr7_2:81409629-81409648 Msa1081590:intron 45.0%
CCAGCATCTACTACAACTGT+GGG - chr7_2:81409630-81409649 Msa1081590:intron 45.0%
! CGGCAATCAGCTTTTGCTTA+AGG + chr7_2:81409659-81409678 None:intergenic 45.0%
CACCAAGATGACTAACCTTG+AGG + chr7_2:81409687-81409706 None:intergenic 45.0%
! CTCAAGGTTAGTCATCTTGG+TGG - chr7_2:81409685-81409704 Msa1081590:intron 45.0%
! CAAGGTTAGTCATCTTGGTG+GGG - chr7_2:81409687-81409706 Msa1081590:intron 45.0%
AAGGCAAACATGTGGTAGAC+AGG + chr7_2:81410476-81410495 None:intergenic 45.0%
ATAACTATCGGTGACATCCC+TGG - chr7_2:81410616-81410635 Msa1081590:intron 45.0%
CATGCATGGTAATAGCACCA+GGG + chr7_2:81410636-81410655 None:intergenic 45.0%
ACATGCATGGTAATAGCACC+AGG + chr7_2:81410637-81410656 None:intergenic 45.0%
AGGCTGTACTACAACATGCA+TGG + chr7_2:81410650-81410669 None:intergenic 45.0%
GAATACTTGTGTCCTGGTAC+AGG - chr7_2:81410741-81410760 Msa1081590:intron 45.0%
!!! TTGACAGCAGAGTTTTAGGG+GGG - chr7_2:81411129-81411148 Msa1081590:intron 45.0%
ACAGGCTGTGAAGTGAGATA+TGG + chr7_2:81411342-81411361 None:intergenic 45.0%
ATGTCTGTGCACTTGAAAGG+TGG + chr7_2:81411449-81411468 None:intergenic 45.0%
ATCCATTCATCGAATGCTGG+GGG + chr7_2:81412111-81412130 None:intergenic 45.0%
!! CAAAATGGGTTGGCTTAGTG+TGG - chr7_2:81412246-81412265 Msa1081590:five_prime_UTR 45.0%
GCTATCCATGAAGGAGGATT+AGG - chr7_2:81412373-81412392 Msa1081590:intron 45.0%
GAAGGAGGATTAGGAACTTG+CGG - chr7_2:81412382-81412401 Msa1081590:intron 45.0%
!! TATTAATATAAAATTAATGT+TGG + chr7_2:81409949-81409968 None:intergenic 5.0%
!!! TATATATTATCATTTTTTAT+CGG - chr7_2:81411040-81411059 Msa1081590:intron 5.0%
ACCTACCTGTGTGACTCTGA+GGG + chr7_2:81409370-81409389 None:intergenic 50.0%
AACCTACCTGTGTGACTCTG+AGG + chr7_2:81409371-81409390 None:intergenic 50.0%
CCCACAGTTGTAGTAGATGC+TGG + chr7_2:81409633-81409652 None:intergenic 50.0%
AGCAAAAGCTGATTGCCGAC+TGG - chr7_2:81409661-81409680 Msa1081590:intron 50.0%
TGACTAACCTTGAGGCCAGT+CGG + chr7_2:81409679-81409698 None:intergenic 50.0%
! GGCCTCAAGGTTAGTCATCT+TGG - chr7_2:81409682-81409701 Msa1081590:intron 50.0%
!! ATCTTGGTGGGGAGTGTTTG+TGG - chr7_2:81409698-81409717 Msa1081590:intron 50.0%
GGCTACGAATACTTGTGTCC+TGG - chr7_2:81410735-81410754 Msa1081590:intron 50.0%
!!! TGACAGCAGAGTTTTAGGGG+GGG - chr7_2:81411130-81411149 Msa1081590:intron 50.0%
CTTCTCTGCGAAGTAGCCAA+GGG + chr7_2:81411750-81411769 None:intergenic 50.0%
TCCCTCAGAGTCACACAGGT+AGG - chr7_2:81409366-81409385 Msa1081590:intron 55.0%
ACAGTCGGTCGCCAAAAGGT+AGG + chr7_2:81410112-81410131 None:intergenic 55.0%
GGATACAGTCGGTCGCCAAA+AGG + chr7_2:81410116-81410135 None:intergenic 55.0%
CCTTCTCTGCGAAGTAGCCA+AGG + chr7_2:81411751-81411770 None:intergenic 55.0%
CCTTGGCTACTTCGCAGAGA+AGG - chr7_2:81411748-81411767 Msa1081590:five_prime_UTR 55.0%
TCTCTTCAAGGGCAGCCACA+AGG + chr7_2:81411837-81411856 None:intergenic 55.0%
TGTGGCTGCCCTTGAAGAGA+AGG - chr7_2:81411837-81411856 Msa1081590:five_prime_UTR 55.0%
!! CTGATTGCCGACTGGCCTCA+AGG - chr7_2:81409669-81409688 Msa1081590:intron 60.0%
GGCCCCCAGCATTCGATGAA+TGG - chr7_2:81412106-81412125 Msa1081590:intron 60.0%
ACAAGGATACCATGGGGGCC+TGG - chr7_2:81412301-81412320 Msa1081590:five_prime_UTR 60.0%
GTGTTTGAACCAGGCCCCCA+TGG + chr7_2:81412313-81412332 None:intergenic 60.0%
ATGCTGGGGGCCGCATGAGC+TGG + chr7_2:81412098-81412117 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 81408440 81412659 81408440 ID=Msa1081590;Name=Msa1081590
chr7_2 mRNA 81408440 81412659 81408440 ID=Msa1081590-mRNA-1;Parent=Msa1081590;Name=Msa1081590-mRNA-1;_AED=0.09;_eAED=0.09;_QI=604|0.8|0.83|1|0.2|0.16|6|808|151
chr7_2 exon 81408440 81409334 81408440 ID=Msa1081590-mRNA-1:exon:20866;Parent=Msa1081590-mRNA-1
chr7_2 exon 81410343 81410575 81410343 ID=Msa1081590-mRNA-1:exon:20865;Parent=Msa1081590-mRNA-1
chr7_2 exon 81411409 81411633 81411409 ID=Msa1081590-mRNA-1:exon:20864;Parent=Msa1081590-mRNA-1
chr7_2 exon 81411716 81411863 81411716 ID=Msa1081590-mRNA-1:exon:20863;Parent=Msa1081590-mRNA-1
chr7_2 exon 81412144 81412339 81412144 ID=Msa1081590-mRNA-1:exon:20862;Parent=Msa1081590-mRNA-1
chr7_2 exon 81412489 81412659 81412489 ID=Msa1081590-mRNA-1:exon:20861;Parent=Msa1081590-mRNA-1
chr7_2 five_prime_UTR 81412489 81412659 81412489 ID=Msa1081590-mRNA-1:five_prime_utr;Parent=Msa1081590-mRNA-1
chr7_2 five_prime_UTR 81412144 81412339 81412144 ID=Msa1081590-mRNA-1:five_prime_utr;Parent=Msa1081590-mRNA-1
chr7_2 five_prime_UTR 81411716 81411863 81411716 ID=Msa1081590-mRNA-1:five_prime_utr;Parent=Msa1081590-mRNA-1
chr7_2 five_prime_UTR 81411545 81411633 81411545 ID=Msa1081590-mRNA-1:five_prime_utr;Parent=Msa1081590-mRNA-1
chr7_2 CDS 81411409 81411544 81411409 ID=Msa1081590-mRNA-1:cds;Parent=Msa1081590-mRNA-1
chr7_2 CDS 81410343 81410575 81410343 ID=Msa1081590-mRNA-1:cds;Parent=Msa1081590-mRNA-1
chr7_2 CDS 81409248 81409334 81409248 ID=Msa1081590-mRNA-1:cds;Parent=Msa1081590-mRNA-1
chr7_2 three_prime_UTR 81408440 81409247 81408440 ID=Msa1081590-mRNA-1:three_prime_utr;Parent=Msa1081590-mRNA-1
Gene Sequence

>Msa1081590

ATGGCAGAAGGAGAGGAGCGTATTGAACTTAAATTCCGCATATATGATGGAACCGATATAGCACACGATACTTATCCAGCATCTACTACAACTGTGGGTGCCCTTAAGCAAAAGCTGATTGCCGACTGGCCTCAAGGCAAAACAGTTACACCAAAGTCAGTTAATGATATAAAGCTTATACATGCCGGTAAAGTTTTGGGAAACAATGAAACGCTTGCTGAGTCCAGAATAACTATCGGTGACATCCCTGGTGCTATTACCATGCATGTTGTAGTACAGCCTCCTGTAGCTAAAAAGAAGACAGGTTTGTTCAAAAATTTATCTGCCCTTTTGCTAAAGCAGTATATGGCTACGAATACTTGTGTCCTGAGAAGGAGAACAAGCAAAAGACAAAGTCATGTGCATGCTCATGCACTATCCTATAGATTAGAAAGCATACCTTGTGGCTGCCCTTGA

Protein sequence

>Msa1081590

MAEGEERIELKFRIYDGTDIAHDTYPASTTTVGALKQKLIADWPQGKTVTPKSVNDIKLIHAGKVLGNNETLAESRITIGDIPGAITMHVVVQPPVAKKKTGLFKNLSALLLKQYMATNTCVLRRRTSKRQSHVHAHALSYRLESIPCGCP*