Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979120 | XP_013451336.1 | 100.000 | 447 | 0 | 0 | 1 | 447 | 1 | 447 | 0.0 | 918 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979120 | sp|O64937|EF1A_ORYSJ | 96.868 | 447 | 14 | 0 | 1 | 447 | 1 | 447 | 0.0 | 901 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979120 | A0A221C697 | 100.000 | 447 | 0 | 0 | 1 | 447 | 1 | 447 | 0.0 | 918 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0609970 | Msa0979120 | -0.807262 | 5.509347e-50 | -8.615850e-47 |
| Msa0212750 | Msa0979120 | 0.802445 | 5.590530e-49 | -8.615850e-47 |
| Msa0426810 | Msa0979120 | -0.809376 | 1.950880e-50 | -8.615850e-47 |
| Msa0239940 | Msa0979120 | -0.801822 | 7.510840e-49 | -8.615850e-47 |
| Msa0308220 | Msa0979120 | -0.800380 | 1.481050e-48 | -8.615850e-47 |
| Msa0524200 | Msa0979120 | 0.805450 | 1.326896e-49 | -8.615850e-47 |
| Msa0876860 | Msa0979120 | 0.974428 | 3.873547e-138 | -8.615850e-47 |
| Msa0956520 | Msa0979120 | 0.810586 | 1.070594e-50 | -8.615850e-47 |
| Msa0979120 | Msa0982590 | -0.817743 | 2.815157e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979120 | MtrunA17_Chr6g0458111 | 100.000 | 447 | 0 | 0 | 1 | 447 | 1 | 447 | 0.0 | 918 |
| Msa0979120 | MtrunA17_Chr6g0458091 | 100.000 | 447 | 0 | 0 | 1 | 447 | 1 | 447 | 0.0 | 918 |
| Msa0979120 | MtrunA17_Chr1g0200071 | 96.652 | 448 | 14 | 1 | 1 | 447 | 1 | 448 | 0.0 | 895 |
| Msa0979120 | MtrunA17_Chr1g0200091 | 96.652 | 448 | 14 | 1 | 1 | 447 | 1 | 448 | 0.0 | 895 |
| Msa0979120 | MtrunA17_Chr1g0200121 | 96.429 | 448 | 15 | 1 | 1 | 447 | 1 | 448 | 0.0 | 895 |
| Msa0979120 | MtrunA17_Chr4g0005781 | 95.302 | 447 | 21 | 0 | 1 | 447 | 1 | 447 | 0.0 | 891 |
| Msa0979120 | MtrunA17_Chr1g0150331 | 88.470 | 451 | 22 | 3 | 1 | 447 | 1 | 425 | 0.0 | 805 |
| Msa0979120 | MtrunA17_Chr1g0193591 | 81.336 | 434 | 81 | 0 | 1 | 434 | 1 | 434 | 0.0 | 739 |
| Msa0979120 | MtrunA17_Chr1g0204031 | 80.182 | 439 | 82 | 3 | 1 | 439 | 1 | 434 | 0.0 | 726 |
| Msa0979120 | MtrunA17_Chr1g0156421 | 78.802 | 434 | 92 | 0 | 1 | 434 | 1 | 434 | 0.0 | 724 |
| Msa0979120 | MtrunA17_Chr8g0340771 | 77.951 | 449 | 96 | 2 | 1 | 446 | 1 | 449 | 0.0 | 713 |
| Msa0979120 | MtrunA17_Chr5g0415391 | 71.537 | 397 | 113 | 0 | 39 | 435 | 1 | 397 | 0.0 | 591 |
| Msa0979120 | MtrunA17_Chr1g0196251 | 67.990 | 403 | 101 | 2 | 4 | 405 | 5 | 380 | 0.0 | 569 |
| Msa0979120 | MtrunA17_Chr8g0336511 | 78.287 | 327 | 70 | 1 | 1 | 326 | 66 | 392 | 0.0 | 541 |
| Msa0979120 | MtrunA17_Chr2g0319341 | 71.681 | 339 | 94 | 1 | 102 | 438 | 1 | 339 | 2.96e-180 | 510 |
| Msa0979120 | MtrunA17_Chr2g0298371 | 67.692 | 325 | 86 | 2 | 102 | 424 | 1 | 308 | 4.07e-159 | 452 |
| Msa0979120 | MtrunA17_Chr8g0340371 | 69.710 | 241 | 70 | 2 | 1 | 240 | 1 | 239 | 6.97e-118 | 344 |
| Msa0979120 | MtrunA17_Chr1g0210931 | 60.403 | 298 | 63 | 4 | 155 | 446 | 1 | 249 | 3.18e-114 | 335 |
| Msa0979120 | MtrunA17_Chr2g0318291 | 71.681 | 226 | 59 | 3 | 1 | 223 | 1 | 224 | 1.40e-112 | 330 |
| Msa0979120 | MtrunA17_Chr6g0483121 | 37.731 | 432 | 255 | 6 | 5 | 428 | 89 | 514 | 9.51e-97 | 300 |
| Msa0979120 | MtrunA17_Chr8g0392641 | 37.731 | 432 | 259 | 6 | 4 | 429 | 143 | 570 | 6.50e-92 | 289 |
| Msa0979120 | MtrunA17_Chr1g0204041 | 85.806 | 155 | 22 | 0 | 1 | 155 | 1 | 155 | 1.58e-90 | 272 |
| Msa0979120 | MtrunA17_Chr8g0380091 | 35.566 | 433 | 270 | 6 | 7 | 433 | 275 | 704 | 1.60e-90 | 289 |
| Msa0979120 | MtrunA17_Chr1g0200111 | 74.011 | 177 | 36 | 1 | 264 | 430 | 1 | 177 | 1.03e-85 | 259 |
| Msa0979120 | MtrunA17_Chr2g0318281 | 67.368 | 190 | 62 | 0 | 243 | 432 | 5 | 194 | 4.93e-83 | 254 |
| Msa0979120 | MtrunA17_Chr1g0156411 | 81.884 | 138 | 25 | 0 | 8 | 145 | 12 | 149 | 1.52e-78 | 240 |
| Msa0979120 | MtrunA17_Chr8g0340361 | 58.378 | 185 | 61 | 2 | 264 | 433 | 1 | 184 | 1.04e-64 | 206 |
| Msa0979120 | MtrunA17_Chr4g0026961 | 53.608 | 194 | 74 | 4 | 195 | 385 | 32 | 212 | 1.19e-57 | 189 |
| Msa0979120 | MtrunA17_Chr4g0026961 | 78.571 | 42 | 9 | 0 | 1 | 42 | 1 | 42 | 3.47e-13 | 68.6 |
| Msa0979120 | MtrunA17_Chr2g0298381 | 77.778 | 99 | 22 | 0 | 1 | 99 | 1 | 99 | 7.03e-48 | 159 |
| Msa0979120 | MtrunA17_Chr8g0341021 | 75.490 | 102 | 25 | 0 | 3 | 104 | 4 | 105 | 1.99e-47 | 158 |
| Msa0979120 | MtrunA17_Chr7g0259481 | 30.227 | 440 | 243 | 14 | 3 | 429 | 59 | 447 | 1.30e-45 | 164 |
| Msa0979120 | MtrunA17_Chr3g0116821 | 30.631 | 444 | 247 | 15 | 3 | 429 | 88 | 487 | 4.06e-42 | 155 |
| Msa0979120 | MtrunA17_Chr1g0211481 | 78.481 | 79 | 17 | 0 | 5 | 83 | 4 | 82 | 6.12e-36 | 128 |
| Msa0979120 | MtrunA17_Chr2g0319351 | 80.822 | 73 | 14 | 0 | 5 | 77 | 5 | 77 | 7.07e-35 | 124 |
| Msa0979120 | MtrunA17_Chr1g0200101 | 72.414 | 87 | 18 | 2 | 154 | 236 | 29 | 113 | 1.32e-34 | 125 |
| Msa0979120 | MtrunA17_Chr1g0200101 | 73.469 | 49 | 13 | 0 | 21 | 69 | 2 | 50 | 8.51e-17 | 76.3 |
| Msa0979120 | MtrunA17_Chr2g0287231 | 32.389 | 247 | 135 | 6 | 1 | 244 | 10 | 227 | 5.11e-31 | 119 |
| Msa0979120 | MtrunA17_Chr8g0341041 | 35.455 | 220 | 79 | 5 | 213 | 432 | 2 | 158 | 1.00e-28 | 110 |
| Msa0979120 | MtrunA17_Chr7g0261801 | 69.697 | 66 | 17 | 1 | 155 | 220 | 1 | 63 | 4.19e-24 | 95.5 |
| Msa0979120 | MtrunA17_Chr3g0130991 | 26.103 | 272 | 144 | 9 | 9 | 272 | 85 | 307 | 2.23e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979120 | AT1G07920.1 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| Msa0979120 | AT1G07940.4 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| Msa0979120 | AT1G07940.1 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| Msa0979120 | AT1G07940.2 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| Msa0979120 | AT1G07940.3 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| Msa0979120 | AT5G60390.3 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| Msa0979120 | AT5G60390.1 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| Msa0979120 | AT5G60390.2 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| Msa0979120 | AT1G07930.1 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| Msa0979120 | AT1G07930.2 | 98.824 | 255 | 3 | 0 | 1 | 255 | 1 | 255 | 0.0 | 530 |
| Msa0979120 | AT1G07930.2 | 90.517 | 116 | 11 | 0 | 331 | 446 | 254 | 369 | 1.84e-68 | 223 |
| Msa0979120 | AT1G18070.1 | 37.412 | 425 | 258 | 5 | 5 | 424 | 99 | 520 | 6.81e-94 | 293 |
| Msa0979120 | AT1G18070.2 | 37.412 | 425 | 258 | 5 | 5 | 424 | 99 | 520 | 6.81e-94 | 293 |
| Msa0979120 | AT1G18070.3 | 36.697 | 436 | 257 | 6 | 5 | 424 | 99 | 531 | 1.07e-90 | 285 |
| Msa0979120 | AT5G10630.1 | 35.765 | 425 | 265 | 5 | 7 | 426 | 239 | 660 | 1.90e-90 | 288 |
| Msa0979120 | AT5G10630.5 | 35.765 | 425 | 265 | 5 | 7 | 426 | 240 | 661 | 1.94e-90 | 288 |
| Msa0979120 | AT5G10630.2 | 35.765 | 425 | 265 | 5 | 7 | 426 | 240 | 661 | 1.94e-90 | 288 |
| Msa0979120 | AT5G10630.3 | 35.765 | 425 | 265 | 5 | 7 | 426 | 310 | 731 | 1.01e-89 | 288 |
| Msa0979120 | AT5G10630.4 | 35.765 | 425 | 265 | 5 | 7 | 426 | 315 | 736 | 1.14e-89 | 288 |
| Msa0979120 | AT1G35550.1 | 77.885 | 104 | 23 | 0 | 335 | 438 | 1 | 104 | 5.74e-54 | 176 |
| Msa0979120 | AT4G20360.1 | 30.594 | 438 | 255 | 10 | 3 | 429 | 75 | 474 | 1.30e-44 | 162 |
| Msa0979120 | AT4G20360.2 | 30.594 | 438 | 255 | 10 | 3 | 429 | 75 | 474 | 1.30e-44 | 162 |
| Msa0979120 | AT4G02930.1 | 29.977 | 437 | 249 | 13 | 3 | 429 | 63 | 452 | 2.06e-44 | 161 |
| Msa0979120 | AT2G31060.3 | 25.000 | 264 | 160 | 8 | 9 | 263 | 61 | 295 | 1.61e-12 | 70.1 |
| Msa0979120 | AT2G31060.2 | 24.615 | 260 | 162 | 7 | 9 | 263 | 61 | 291 | 2.26e-11 | 66.6 |
| Msa0979120 | AT5G08650.1 | 27.037 | 270 | 144 | 10 | 9 | 272 | 88 | 310 | 2.47e-11 | 66.2 |
| Msa0979120 | AT5G08650.2 | 27.037 | 270 | 144 | 10 | 9 | 272 | 88 | 310 | 2.74e-11 | 66.2 |
Find 152 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGGTATGGTTGTGACTTT+TGG | 0.190241 | 6_4:+15537946 | Msa0979120:CDS |
| GGCTTGTCTGTGGGTCTCTT+TGG | 0.228629 | 6_4:-15537838 | None:intergenic |
| TTTCTATAGGCAGCTATATA+AGG | 0.276105 | 6_4:+15538722 | Msa0979120:three_prime_UTR |
| GGTGTGACATTACTTCTTCT+TGG | 0.321937 | 6_4:-15538493 | None:intergenic |
| GCTCTCACTGAAGCTCTTCC+AGG | 0.343392 | 6_4:+15538018 | Msa0979120:CDS |
| GTCTCTTTGGCTCGTTGATC+TGG | 0.343863 | 6_4:-15537825 | None:intergenic |
| TTGCAAGATGTTTACAAGAT+TGG | 0.346171 | 6_4:+15537874 | Msa0979120:CDS |
| TTCATCAAGAACATGATTAC+TGG | 0.350652 | 6_4:+15537187 | Msa0979120:CDS |
| CATATCAACATTGTCGTCAT+TGG | 0.354281 | 6_4:+15536914 | Msa0979120:CDS |
| TGCAGCTAAACTTACAGAAC+TGG | 0.361784 | 6_4:+15538613 | Msa0979120:three_prime_UTR |
| GTTTACAAGATTGGTGGTAT+TGG | 0.363154 | 6_4:+15537883 | Msa0979120:CDS |
| CTTCTTCTTGGCAGCAGCCT+TGG | 0.371495 | 6_4:-15538481 | None:intergenic |
| AGAGAGAGACTGAGTGATAA+AGG | 0.376933 | 6_4:-15535421 | None:intergenic |
| AAGTTGGCAGCTTCCTTGGC+AGG | 0.382611 | 6_4:-15538123 | None:intergenic |
| GCTCTTCTTGCATTTACTCT+TGG | 0.389052 | 6_4:+15537304 | Msa0979120:CDS |
| AGTGAAGTTGGCAGCTTCCT+TGG | 0.410082 | 6_4:-15538127 | None:intergenic |
| ACCTGGCCTTCGAGTACTTA+GGG | 0.418829 | 6_4:-15537639 | None:intergenic |
| ACCAGATCGCCTGTCAATCT+TGG | 0.419719 | 6_4:-15538256 | None:intergenic |
| TTCCTTGGCAGGGTCATCCT+TGG | 0.427055 | 6_4:-15538112 | None:intergenic |
| GTTCCCATCTCCGGATTTGA+AGG | 0.431146 | 6_4:+15537733 | Msa0979120:CDS |
| AAGCCTGAGGGGCTTGTCTG+TGG | 0.432212 | 6_4:-15537848 | None:intergenic |
| TCTGGAAAATCAACAACAAC+TGG | 0.436226 | 6_4:+15536947 | Msa0979120:CDS |
| AGCCTGAGGGGCTTGTCTGT+GGG | 0.440652 | 6_4:-15537847 | None:intergenic |
| ATGGGTTCTTGACAAACTTA+AGG | 0.442151 | 6_4:+15537066 | Msa0979120:CDS |
| ATACCTCAGCTGAAACGAAA+TGG | 0.442258 | 6_4:-15535475 | None:intergenic |
| CATGTTGTCACCTTCAAATC+CGG | 0.442623 | 6_4:-15537743 | None:intergenic |
| TATCCGTTTCCGATCTGTCC+AGG | 0.445786 | 6_4:-15538174 | None:intergenic |
| CCGGTCTCAACACGTCCAAC+TGG | 0.449484 | 6_4:-15537913 | None:intergenic |
| ATTCCCTTCGTTCCCATCTC+CGG | 0.450165 | 6_4:+15537724 | Msa0979120:CDS |
| GGCAGGGTCATCCTTGGAGT+TGG | 0.452433 | 6_4:-15538106 | None:intergenic |
| CTTATCATTGACTCCACCAC+TGG | 0.461752 | 6_4:+15537235 | Msa0979120:CDS |
| ATGGAAGGTTGTTACTCGTT+CGG | 0.464368 | 6_4:-15535456 | None:intergenic |
| GGTCTCAACCACCATGGGCT+TGG | 0.466910 | 6_4:-15538346 | None:intergenic |
| CTCAACCACCATGGGCTTGG+TGG | 0.468734 | 6_4:-15538343 | None:intergenic |
| ACCAAGATTGACAGGCGATC+TGG | 0.474566 | 6_4:+15538255 | Msa0979120:CDS |
| CAAGATGTTTACAAGATTGG+TGG | 0.475647 | 6_4:+15537877 | Msa0979120:CDS |
| TAAGAACAGCACAATCAGCC+TGG | 0.478298 | 6_4:-15537216 | None:intergenic |
| CTTCACGATTTCATCGTACC+TGG | 0.484982 | 6_4:-15537656 | None:intergenic |
| CTTAAGGCTGAGCGTGAAAG+AGG | 0.490014 | 6_4:+15537082 | Msa0979120:CDS |
| GTCATTGGACATGTCGACTC+TGG | 0.490675 | 6_4:+15536929 | Msa0979120:CDS |
| TCAGTCTCTCTCTGCGGCTG+AGG | 0.491965 | 6_4:+15535431 | Msa0979120:five_prime_UTR |
| CACCCTGGACAGATCGGAAA+CGG | 0.491987 | 6_4:+15538171 | Msa0979120:CDS |
| GTCACCTTCAAATCCGGAGA+TGG | 0.495769 | 6_4:-15537737 | None:intergenic |
| AGTTTCATCCTACTTGAAGA+AGG | 0.496964 | 6_4:+15537681 | Msa0979120:CDS |
| TCCAAAAGTCACAACCATAC+CGG | 0.497778 | 6_4:-15537947 | None:intergenic |
| AATTGCAGTTTAAGACATCA+TGG | 0.500445 | 6_4:+15536877 | Msa0979120:intron |
| CATCAAGGCTGTGGAGAAGA+AGG | 0.501366 | 6_4:+15538437 | Msa0979120:CDS |
| CACCAACCTTGACTGGTACA+AGG | 0.502465 | 6_4:+15537777 | Msa0979120:CDS |
| TCATCCTACTTGAAGAAGGT+TGG | 0.505639 | 6_4:+15537685 | Msa0979120:CDS |
| AACTTGTTACCAAGATTGAC+AGG | 0.511236 | 6_4:+15538247 | Msa0979120:CDS |
| GACCCACAGACAAGCCCCTC+AGG | 0.515484 | 6_4:+15537845 | Msa0979120:CDS |
| TACAGAACTGGGTTCTTGAT+CGG | 0.517099 | 6_4:+15538625 | Msa0979120:three_prime_UTR |
| GAGCCTAAGTTCTTGAAGAA+TGG | 0.517492 | 6_4:+15538294 | Msa0979120:CDS |
| GATTGACAGGCGATCTGGTA+AGG | 0.518046 | 6_4:+15538260 | Msa0979120:CDS |
| CTTGTACCAGTCAAGGTTGG+TGG | 0.518944 | 6_4:-15537776 | None:intergenic |
| TACCTGGCCTTCGAGTACTT+AGG | 0.520657 | 6_4:-15537640 | None:intergenic |
| ATCATTGACTCCACCACTGG+TGG | 0.521304 | 6_4:+15537238 | Msa0979120:CDS |
| AGAGGTCCACCAACCTTGAC+TGG | 0.523105 | 6_4:+15537770 | Msa0979120:CDS |
| TCACCATTCTTCAAGAACTT+AGG | 0.524504 | 6_4:-15538297 | None:intergenic |
| TTGAATCCGACATTGTCTCC+TGG | 0.526013 | 6_4:-15538036 | None:intergenic |
| TCAACCACCATGGGCTTGGT+GGG | 0.529820 | 6_4:-15538342 | None:intergenic |
| CTTCCATTTCGTTTCAGCTG+AGG | 0.534419 | 6_4:+15535472 | Msa0979120:five_prime_UTR |
| AGCGTTCATTCAAGTACGCA+TGG | 0.534658 | 6_4:+15537047 | Msa0979120:CDS |
| GTGGAGAAGAAGGATCCTAC+TGG | 0.535855 | 6_4:+15538447 | Msa0979120:CDS |
| CCAAAAGTCACAACCATACC+GGG | 0.540748 | 6_4:-15537946 | None:intergenic |
| ACTGGGTTCTTGATCGGCGA+TGG | 0.543939 | 6_4:+15538631 | Msa0979120:three_prime_UTR |
| GATGACTTGGGAAGTGAAGT+TGG | 0.546093 | 6_4:-15538139 | None:intergenic |
| TCCCTTGTACCAGTCAAGGT+TGG | 0.546130 | 6_4:-15537779 | None:intergenic |
| ATGCAAGAAGAGCGTGCTCA+CGG | 0.549857 | 6_4:-15537294 | None:intergenic |
| GAAGGATCCTACTGGAGCTA+AGG | 0.552001 | 6_4:+15538455 | Msa0979120:CDS |
| CCCCTAAGTACTCGAAGGCC+AGG | 0.553487 | 6_4:+15537638 | Msa0979120:CDS |
| TTCTTGAAGAATGGTGATGC+TGG | 0.554703 | 6_4:+15538303 | Msa0979120:CDS |
| TGCACAGTCATTGATGCACC+TGG | 0.556287 | 6_4:+15537154 | Msa0979120:CDS |
| ATCTTGCAATGGAAGCCTGA+GGG | 0.556985 | 6_4:-15537860 | None:intergenic |
| TGTTGCTGTTGGTGTCATCA+AGG | 0.557300 | 6_4:+15538422 | Msa0979120:CDS |
| TCACCTTCAAATCCGGAGAT+GGG | 0.557788 | 6_4:-15537736 | None:intergenic |
| CATACCGGGCTTCACAATAC+CGG | 0.558131 | 6_4:-15537932 | None:intergenic |
| ACCAACCTTGACTGGTACAA+GGG | 0.559612 | 6_4:+15537778 | Msa0979120:CDS |
| TTGATGAAATCACGATGTCC+AGG | 0.561637 | 6_4:-15537172 | None:intergenic |
| GTAACCAACCTTCTTCAAGT+AGG | 0.562921 | 6_4:-15537689 | None:intergenic |
| GCGAAGGTCTCAACCACCAT+GGG | 0.563446 | 6_4:-15538351 | None:intergenic |
| AGTTGGCAGCTTCCTTGGCA+GGG | 0.564600 | 6_4:-15538122 | None:intergenic |
| GGTGGTTCATGATGATGACT+TGG | 0.569890 | 6_4:-15538152 | None:intergenic |
| AGCTTCAAAACCACCAGTGG+TGG | 0.571917 | 6_4:-15537248 | None:intergenic |
| TTGGTCCCTTGTACCAGTCA+AGG | 0.575920 | 6_4:-15537783 | None:intergenic |
| AACTTCAGTTGTCAATCCAG+TGG | 0.577026 | 6_4:-15537971 | None:intergenic |
| GACTGTGCAGTAGTACTTGG+TGG | 0.578462 | 6_4:-15537140 | None:intergenic |
| GGTTTGATAATTTATGTCTG+TGG | 0.579645 | 6_4:+15538843 | Msa0979120:three_prime_UTR |
| TGCAAGAAGAGCGTGCTCAC+GGG | 0.579779 | 6_4:-15537293 | None:intergenic |
| TGTTAAGAATGTTGCTGTGA+AGG | 0.579878 | 6_4:+15538059 | Msa0979120:CDS |
| ATGAACCACCCTGGACAGAT+CGG | 0.581582 | 6_4:+15538165 | Msa0979120:CDS |
| CATGATTACTGGAACCTCCC+AGG | 0.581850 | 6_4:+15537198 | Msa0979120:CDS |
| TCAAGAGCCTCAAGAAGAGT+TGG | 0.584894 | 6_4:-15537802 | None:intergenic |
| ATCCGTTTCCGATCTGTCCA+GGG | 0.587827 | 6_4:-15538173 | None:intergenic |
| TTCGCTGAATATCCTCCACT+TGG | 0.588646 | 6_4:+15538369 | Msa0979120:CDS |
| AATGACTGTGCAGTAGTACT+TGG | 0.591989 | 6_4:-15537143 | None:intergenic |
| GAAGCTGGTATCTCTAAGGA+TGG | 0.592030 | 6_4:+15537265 | Msa0979120:CDS |
| CCAGTTGGACGTGTTGAGAC+CGG | 0.592088 | 6_4:+15537913 | Msa0979120:CDS |
| ATCTTGTAAACATCTTGCAA+TGG | 0.592677 | 6_4:-15537871 | None:intergenic |
| ATTGCAGTTTAAGACATCAT+GGG | 0.594857 | 6_4:+15536878 | Msa0979120:intron |
| ACTTCAGTTGTCAATCCAGT+GGG | 0.599610 | 6_4:-15537970 | None:intergenic |
| GAGGTGTGGCAATCAAGCAC+TGG | 0.600600 | 6_4:-15538201 | None:intergenic |
| GGTCACTTGATCTACAAGCT+AGG | 0.604596 | 6_4:+15536968 | Msa0979120:CDS |
| TTTCCACAAGGCAATATCGA+TGG | 0.606438 | 6_4:-15537110 | None:intergenic |
| AAGAACAGCACAATCAGCCT+GGG | 0.607202 | 6_4:-15537215 | None:intergenic |
| TGTTGGTGTCATCAAGGCTG+TGG | 0.608422 | 6_4:+15538428 | Msa0979120:CDS |
| AAATCCGGAGATGGGAACGA+AGG | 0.610633 | 6_4:-15537728 | None:intergenic |
| GATGGTTCCCACCAAGCCCA+TGG | 0.611182 | 6_4:+15538335 | Msa0979120:CDS |
| AATCCGGAGATGGGAACGAA+GGG | 0.611560 | 6_4:-15537727 | None:intergenic |
| GCGTTCATTCAAGTACGCAT+GGG | 0.615188 | 6_4:+15537048 | Msa0979120:CDS |
| CTCCAAGGATGACCCTGCCA+AGG | 0.619064 | 6_4:+15538110 | Msa0979120:CDS |
| ATGCGTCAAACTGTTGCTGT+TGG | 0.619748 | 6_4:+15538411 | Msa0979120:CDS |
| AGCGAAGGTCTCAACCACCA+TGG | 0.623872 | 6_4:-15538352 | None:intergenic |
| AAGGTGACAACATGATTGAG+AGG | 0.624581 | 6_4:+15537752 | Msa0979120:CDS |
| GAGACCGGTATTGTGAAGCC+CGG | 0.625104 | 6_4:+15537928 | Msa0979120:CDS |
| CTCAGCTGAAACGAAATGGA+AGG | 0.630534 | 6_4:-15535471 | None:intergenic |
| TCTTGCAATGGAAGCCTGAG+GGG | 0.631058 | 6_4:-15537859 | None:intergenic |
| CAAGGGACCAACTCTTCTTG+AGG | 0.634066 | 6_4:+15537795 | Msa0979120:CDS |
| ATCTGGTAAGGAGATTGAGA+AGG | 0.634092 | 6_4:+15538272 | Msa0979120:CDS |
| GATGATCTGTTGTTGTAACA+AGG | 0.635291 | 6_4:+15537336 | Msa0979120:CDS |
| GTCATCATCATGAACCACCC+TGG | 0.635348 | 6_4:+15538156 | Msa0979120:CDS |
| TGATGCTGGTATCATTAAGA+TGG | 0.636151 | 6_4:+15538317 | Msa0979120:CDS |
| TGTGATCGAGAGATTCGAGA+AGG | 0.638590 | 6_4:+15537006 | Msa0979120:CDS |
| GCAGCTAAACTTACAGAACT+GGG | 0.640637 | 6_4:+15538614 | Msa0979120:three_prime_UTR |
| CCTGGCCTTCGAGTACTTAG+GGG | 0.644615 | 6_4:-15537638 | None:intergenic |
| CACTTGATCTACAAGCTAGG+AGG | 0.645428 | 6_4:+15536971 | Msa0979120:CDS |
| TTACCATCGATATTGCCTTG+TGG | 0.647445 | 6_4:+15537107 | Msa0979120:CDS |
| TACTGGAGCTAAGGTCACCA+AGG | 0.647527 | 6_4:+15538464 | Msa0979120:CDS |
| GGTATTGGAACTGTGCCAGT+TGG | 0.649080 | 6_4:+15537898 | Msa0979120:CDS |
| GCTCTTCCAGGAGACAATGT+CGG | 0.651488 | 6_4:+15538030 | Msa0979120:CDS |
| TTTCGTAGCATCCAACTCCA+AGG | 0.653237 | 6_4:+15538095 | Msa0979120:CDS |
| AAACTTCACAGCAATGTGAG+AGG | 0.653594 | 6_4:-15538220 | None:intergenic |
| AACAGCACAATCAGCCTGGG+AGG | 0.653730 | 6_4:-15537212 | None:intergenic |
| CATCTTGCAATGGAAGCCTG+AGG | 0.654491 | 6_4:-15537861 | None:intergenic |
| ACAGCAAAACGTCCAAGTGG+AGG | 0.656142 | 6_4:-15538381 | None:intergenic |
| GGCCTTCGAGTACTTAGGGG+TGG | 0.657553 | 6_4:-15537635 | None:intergenic |
| CAGGTACGATGAAATCGTGA+AGG | 0.661162 | 6_4:+15537657 | Msa0979120:CDS |
| TTGGTGACCTTAGCTCCAGT+AGG | 0.661771 | 6_4:-15538462 | None:intergenic |
| ACCAGCTTCAAAACCACCAG+TGG | 0.669846 | 6_4:-15537251 | None:intergenic |
| TCACAGCAATGTGAGAGGTG+TGG | 0.670228 | 6_4:-15538215 | None:intergenic |
| AAGTGGAGGATATTCAGCGA+AGG | 0.673733 | 6_4:-15538367 | None:intergenic |
| CGTTTCCGATCTGTCCAGGG+TGG | 0.684114 | 6_4:-15538170 | None:intergenic |
| CTGACAGCAAAACGTCCAAG+TGG | 0.689307 | 6_4:-15538384 | None:intergenic |
| GTGGTTCATGATGATGACTT+GGG | 0.690284 | 6_4:-15538151 | None:intergenic |
| TACCACCCCTAAGTACTCGA+AGG | 0.691722 | 6_4:+15537633 | Msa0979120:CDS |
| GGTGGTCTCAAATTTCCACA+AGG | 0.697133 | 6_4:-15537122 | None:intergenic |
| GTCTGTTGAGATGCACCACG+AGG | 0.705830 | 6_4:+15537996 | Msa0979120:CDS |
| GCTGTGAAGGATCTCAAGCG+TGG | 0.706441 | 6_4:+15538072 | Msa0979120:CDS |
| GAAGAAGTAATGTCACACCA+TGG | 0.707859 | 6_4:+15538497 | Msa0979120:exon |
| GGTTCCCACCAAGCCCATGG+TGG | 0.716413 | 6_4:+15538338 | Msa0979120:CDS |
| TATCACTCAGTCTCTCTCTG+CGG | 0.724565 | 6_4:+15535425 | Msa0979120:five_prime_UTR |
| GAGCTTCAGTGAGAGCCTCG+TGG | 0.728674 | 6_4:-15538011 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTAATTAGATGTTTAAT+TGG | + | chr6_4:15536004-15536023 | Msa0979120:intron | 15.0% |
| !! | TAAATCAGTATCAATTATAT+TGG | + | chr6_4:15536383-15536402 | Msa0979120:intron | 15.0% |
| !!! | TTGATTAAATCTTATTTTCT+TGG | + | chr6_4:15536688-15536707 | Msa0979120:intron | 15.0% |
| !!! | TTCATGATGATTTTTGAAAT+TGG | + | chr6_4:15535870-15535889 | Msa0979120:intron | 20.0% |
| !!! | TTGTTTTGTTGTTAATGATT+TGG | + | chr6_4:15535922-15535941 | Msa0979120:intron | 20.0% |
| !! | CTGTTTGATTATATCTTAAT+TGG | + | chr6_4:15535950-15535969 | Msa0979120:intron | 20.0% |
| !! | AATTAGATGTTTAATTGGTT+AGG | + | chr6_4:15536009-15536028 | Msa0979120:intron | 20.0% |
| !!! | TTTTTTTGAACTTGATGATT+TGG | + | chr6_4:15536036-15536055 | Msa0979120:intron | 20.0% |
| !!! | TGATTTTGTTAATCTGTAAT+TGG | + | chr6_4:15536138-15536157 | Msa0979120:intron | 20.0% |
| !!! | TGATTTTGAACTTTATGATT+TGG | + | chr6_4:15536226-15536245 | Msa0979120:intron | 20.0% |
| !!! | TTTCAATATTTTGTTTCAGA+TGG | + | chr6_4:15537606-15537625 | Msa0979120:intron | 20.0% |
| !! | CAAAAACTTGAAAATAAAAC+TGG | - | chr6_4:15538584-15538603 | None:intergenic | 20.0% |
| !!! | TGTCGTTCATTTTTATAATT+TGG | + | chr6_4:15538822-15538841 | Msa0979120:three_prime_UTR | 20.0% |
| !!! | GCTTTTTTCATGATTTTGTT+CGG | + | chr6_4:15535568-15535587 | Msa0979120:intron | 25.0% |
| !!! | TTTGTTGTTGTTCGTTTATT+TGG | + | chr6_4:15535641-15535660 | Msa0979120:intron | 25.0% |
| ! | TGTTCGTTTATTTGGTTAAA+AGG | + | chr6_4:15535649-15535668 | Msa0979120:intron | 25.0% |
| ! | GTTCGTTTATTTGGTTAAAA+GGG | + | chr6_4:15535650-15535669 | Msa0979120:intron | 25.0% |
| ! | TCATGATGTTGTATGTTAAT+TGG | + | chr6_4:15535780-15535799 | Msa0979120:intron | 25.0% |
| ! | CTGTTTGATTAGATCTTAAT+TGG | + | chr6_4:15536064-15536083 | Msa0979120:intron | 25.0% |
| ! | CTGTTTGATTAGATCTTAAT+TGG | + | chr6_4:15536064-15536083 | Msa0979120:intron | 25.0% |
| ! | TCTATTAGATTGTTTCATTG+AGG | + | chr6_4:15536423-15536442 | Msa0979120:intron | 25.0% |
| ! | CTATTAGATTGTTTCATTGA+GGG | + | chr6_4:15536424-15536443 | Msa0979120:intron | 25.0% |
| !! | TGTCTTGAAATGATTTTGTT+AGG | + | chr6_4:15536471-15536490 | Msa0979120:intron | 25.0% |
| !! | GTCTTGAAATGATTTTGTTA+GGG | + | chr6_4:15536472-15536491 | Msa0979120:intron | 25.0% |
| !! | TTGAGAACTTCATTTTCTAT+AGG | + | chr6_4:15538709-15538728 | Msa0979120:three_prime_UTR | 25.0% |
| ATCAAAGAGAAAGGAATCAA+AGG | - | chr6_4:15535504-15535523 | None:intergenic | 30.0% | |
| ATAGATCGAATCAAAGAGAA+AGG | - | chr6_4:15535513-15535532 | None:intergenic | 30.0% | |
| AGAAACTGTAACAAACAAAC+AGG | - | chr6_4:15535708-15535727 | None:intergenic | 30.0% | |
| CTGATTTATTAGATCTTGCA+TGG | - | chr6_4:15536371-15536390 | None:intergenic | 30.0% | |
| CGAATTATTCTGCTCAATTA+AGG | + | chr6_4:15536657-15536676 | Msa0979120:intron | 30.0% | |
| !! | CTGATTTGTTGTTTGCTTAT+TGG | + | chr6_4:15536713-15536732 | Msa0979120:intron | 30.0% |
| ! | TGTGTTATTAACATGAGTTC+TGG | + | chr6_4:15536756-15536775 | Msa0979120:intron | 30.0% |
| ! | AATTGCAGTTTAAGACATCA+TGG | + | chr6_4:15536877-15536896 | Msa0979120:intron | 30.0% |
| ! | ATTGCAGTTTAAGACATCAT+GGG | + | chr6_4:15536878-15536897 | Msa0979120:intron | 30.0% |
| TTCATCAAGAACATGATTAC+TGG | + | chr6_4:15537187-15537206 | Msa0979120:CDS | 30.0% | |
| ! | TACTAAATATGTTGAGTTGC+AGG | + | chr6_4:15537404-15537423 | Msa0979120:intron | 30.0% |
| !! | TTATTTGCTGATTCTGACTT+TGG | + | chr6_4:15537492-15537511 | Msa0979120:intron | 30.0% |
| ATCTTGTAAACATCTTGCAA+TGG | - | chr6_4:15537874-15537893 | None:intergenic | 30.0% | |
| TTGCAAGATGTTTACAAGAT+TGG | + | chr6_4:15537874-15537893 | Msa0979120:CDS | 30.0% | |
| !! | TCTTGTCTGTTTGATTTTGA+TGG | + | chr6_4:15538661-15538680 | Msa0979120:three_prime_UTR | 30.0% |
| TTTCTATAGGCAGCTATATA+AGG | + | chr6_4:15538722-15538741 | Msa0979120:three_prime_UTR | 30.0% | |
| TAAAAATGAACGACAGAAAC+AGG | - | chr6_4:15538817-15538836 | None:intergenic | 30.0% | |
| !! | GCTGATTTTGAACTTGATGT+AGG | - | chr6_4:15536344-15536363 | None:intergenic | 35.0% |
| TAGATTGTTTCATTGAGGGT+AGG | + | chr6_4:15536428-15536447 | Msa0979120:intron | 35.0% | |
| AGATTGTTTCATTGAGGGTA+GGG | + | chr6_4:15536429-15536448 | Msa0979120:intron | 35.0% | |
| ! | CTTCTGAGCTTCATTTTGTT+AGG | + | chr6_4:15536537-15536556 | Msa0979120:intron | 35.0% |
| TGAGCAGAATAATTCGTCAA+TGG | - | chr6_4:15536653-15536672 | None:intergenic | 35.0% | |
| CATATCAACATTGTCGTCAT+TGG | + | chr6_4:15536914-15536933 | Msa0979120:CDS | 35.0% | |
| TCTGGAAAATCAACAACAAC+TGG | + | chr6_4:15536947-15536966 | Msa0979120:CDS | 35.0% | |
| ATGGGTTCTTGACAAACTTA+AGG | + | chr6_4:15537066-15537085 | Msa0979120:CDS | 35.0% | |
| !!! | TTTTGAAGCTGGTATCTCTA+AGG | + | chr6_4:15537261-15537280 | Msa0979120:CDS | 35.0% |
| GATGATCTGTTGTTGTAACA+AGG | + | chr6_4:15537336-15537355 | Msa0979120:CDS | 35.0% | |
| CTAGTTGTAGATTCTGACTT+TGG | + | chr6_4:15537583-15537602 | Msa0979120:intron | 35.0% | |
| AGTTTCATCCTACTTGAAGA+AGG | + | chr6_4:15537681-15537700 | Msa0979120:CDS | 35.0% | |
| CAAGATGTTTACAAGATTGG+TGG | + | chr6_4:15537877-15537896 | Msa0979120:CDS | 35.0% | |
| ! | GTTTACAAGATTGGTGGTAT+TGG | + | chr6_4:15537883-15537902 | Msa0979120:CDS | 35.0% |
| TGTTAAGAATGTTGCTGTGA+AGG | + | chr6_4:15538059-15538078 | Msa0979120:CDS | 35.0% | |
| !! | AACTTGTTACCAAGATTGAC+AGG | + | chr6_4:15538247-15538266 | Msa0979120:CDS | 35.0% |
| TCACCATTCTTCAAGAACTT+AGG | - | chr6_4:15538300-15538319 | None:intergenic | 35.0% | |
| TGATGCTGGTATCATTAAGA+TGG | + | chr6_4:15538317-15538336 | Msa0979120:CDS | 35.0% | |
| AGAGAGAGACTGAGTGATAA+AGG | - | chr6_4:15535424-15535443 | None:intergenic | 40.0% | |
| ATGGAAGGTTGTTACTCGTT+CGG | - | chr6_4:15535459-15535478 | None:intergenic | 40.0% | |
| ATACCTCAGCTGAAACGAAA+TGG | - | chr6_4:15535478-15535497 | None:intergenic | 40.0% | |
| GTAATGTTGAACCGTTGATG+TGG | + | chr6_4:15536315-15536334 | Msa0979120:intron | 40.0% | |
| GATGTAGGTAACCACATCAA+CGG | - | chr6_4:15536329-15536348 | None:intergenic | 40.0% | |
| TTACCATCGATATTGCCTTG+TGG | + | chr6_4:15537107-15537126 | Msa0979120:CDS | 40.0% | |
| TTTCCACAAGGCAATATCGA+TGG | - | chr6_4:15537113-15537132 | None:intergenic | 40.0% | |
| AATGACTGTGCAGTAGTACT+TGG | - | chr6_4:15537146-15537165 | None:intergenic | 40.0% | |
| TTGATGAAATCACGATGTCC+AGG | - | chr6_4:15537175-15537194 | None:intergenic | 40.0% | |
| GCTCTTCTTGCATTTACTCT+TGG | + | chr6_4:15537304-15537323 | Msa0979120:CDS | 40.0% | |
| TCATCCTACTTGAAGAAGGT+TGG | + | chr6_4:15537685-15537704 | Msa0979120:CDS | 40.0% | |
| GTAACCAACCTTCTTCAAGT+AGG | - | chr6_4:15537692-15537711 | None:intergenic | 40.0% | |
| ! | GAACGAAGGGAATTTTGTCT+GGG | - | chr6_4:15537717-15537736 | None:intergenic | 40.0% |
| CATGTTGTCACCTTCAAATC+CGG | - | chr6_4:15537746-15537765 | None:intergenic | 40.0% | |
| AAGGTGACAACATGATTGAG+AGG | + | chr6_4:15537752-15537771 | Msa0979120:CDS | 40.0% | |
| TCCAAAAGTCACAACCATAC+CGG | - | chr6_4:15537950-15537969 | None:intergenic | 40.0% | |
| ACTTCAGTTGTCAATCCAGT+GGG | - | chr6_4:15537973-15537992 | None:intergenic | 40.0% | |
| AACTTCAGTTGTCAATCCAG+TGG | - | chr6_4:15537974-15537993 | None:intergenic | 40.0% | |
| ! | GTGGTTCATGATGATGACTT+GGG | - | chr6_4:15538154-15538173 | None:intergenic | 40.0% |
| AAACTTCACAGCAATGTGAG+AGG | - | chr6_4:15538223-15538242 | None:intergenic | 40.0% | |
| ATCTGGTAAGGAGATTGAGA+AGG | + | chr6_4:15538272-15538291 | Msa0979120:CDS | 40.0% | |
| GAGCCTAAGTTCTTGAAGAA+TGG | + | chr6_4:15538294-15538313 | Msa0979120:CDS | 40.0% | |
| ! | TTCTTGAAGAATGGTGATGC+TGG | + | chr6_4:15538303-15538322 | Msa0979120:CDS | 40.0% |
| GGTGTGACATTACTTCTTCT+TGG | - | chr6_4:15538496-15538515 | None:intergenic | 40.0% | |
| GAAGAAGTAATGTCACACCA+TGG | + | chr6_4:15538497-15538516 | Msa0979120:exon | 40.0% | |
| TGCAGCTAAACTTACAGAAC+TGG | + | chr6_4:15538613-15538632 | Msa0979120:three_prime_UTR | 40.0% | |
| GCAGCTAAACTTACAGAACT+GGG | + | chr6_4:15538614-15538633 | Msa0979120:three_prime_UTR | 40.0% | |
| TACAGAACTGGGTTCTTGAT+CGG | + | chr6_4:15538625-15538644 | Msa0979120:three_prime_UTR | 40.0% | |
| ! | TAGCTTCATTTTGCTGCTGA+TGG | + | chr6_4:15538749-15538768 | Msa0979120:three_prime_UTR | 40.0% |
| TATCACTCAGTCTCTCTCTG+CGG | + | chr6_4:15535425-15535444 | Msa0979120:five_prime_UTR | 45.0% | |
| CTCAGCTGAAACGAAATGGA+AGG | - | chr6_4:15535474-15535493 | None:intergenic | 45.0% | |
| CTTCCATTTCGTTTCAGCTG+AGG | + | chr6_4:15535472-15535491 | Msa0979120:five_prime_UTR | 45.0% | |
| !!! | GAGGGTAGGGCTTTTTTAAC+TGG | + | chr6_4:15536442-15536461 | Msa0979120:intron | 45.0% |
| GGTCACTTGATCTACAAGCT+AGG | + | chr6_4:15536968-15536987 | Msa0979120:CDS | 45.0% | |
| CACTTGATCTACAAGCTAGG+AGG | + | chr6_4:15536971-15536990 | Msa0979120:CDS | 45.0% | |
| TGTGATCGAGAGATTCGAGA+AGG | + | chr6_4:15537006-15537025 | Msa0979120:CDS | 45.0% | |
| AGCGTTCATTCAAGTACGCA+TGG | + | chr6_4:15537047-15537066 | Msa0979120:CDS | 45.0% | |
| GCGTTCATTCAAGTACGCAT+GGG | + | chr6_4:15537048-15537067 | Msa0979120:CDS | 45.0% | |
| GGTGGTCTCAAATTTCCACA+AGG | - | chr6_4:15537125-15537144 | None:intergenic | 45.0% | |
| AAGAACAGCACAATCAGCCT+GGG | - | chr6_4:15537218-15537237 | None:intergenic | 45.0% | |
| TAAGAACAGCACAATCAGCC+TGG | - | chr6_4:15537219-15537238 | None:intergenic | 45.0% | |
| !! | CTTATCATTGACTCCACCAC+TGG | + | chr6_4:15537235-15537254 | Msa0979120:CDS | 45.0% |
| ! | GAAGCTGGTATCTCTAAGGA+TGG | + | chr6_4:15537265-15537284 | Msa0979120:CDS | 45.0% |
| CTTCACGATTTCATCGTACC+TGG | - | chr6_4:15537659-15537678 | None:intergenic | 45.0% | |
| CAGGTACGATGAAATCGTGA+AGG | + | chr6_4:15537657-15537676 | Msa0979120:CDS | 45.0% | |
| ! | GGAACGAAGGGAATTTTGTC+TGG | - | chr6_4:15537718-15537737 | None:intergenic | 45.0% |
| TCACCTTCAAATCCGGAGAT+GGG | - | chr6_4:15537739-15537758 | None:intergenic | 45.0% | |
| ACCAACCTTGACTGGTACAA+GGG | + | chr6_4:15537778-15537797 | Msa0979120:CDS | 45.0% | |
| TCAAGAGCCTCAAGAAGAGT+TGG | - | chr6_4:15537805-15537824 | None:intergenic | 45.0% | |
| ATCTTGCAATGGAAGCCTGA+GGG | - | chr6_4:15537863-15537882 | None:intergenic | 45.0% | |
| CCAAAAGTCACAACCATACC+GGG | - | chr6_4:15537949-15537968 | None:intergenic | 45.0% | |
| TTGAATCCGACATTGTCTCC+TGG | - | chr6_4:15538039-15538058 | None:intergenic | 45.0% | |
| TTTCGTAGCATCCAACTCCA+AGG | + | chr6_4:15538095-15538114 | Msa0979120:CDS | 45.0% | |
| ! | GATGACTTGGGAAGTGAAGT+TGG | - | chr6_4:15538142-15538161 | None:intergenic | 45.0% |
| ! | GGTGGTTCATGATGATGACT+TGG | - | chr6_4:15538155-15538174 | None:intergenic | 45.0% |
| AAGTGGAGGATATTCAGCGA+AGG | - | chr6_4:15538370-15538389 | None:intergenic | 45.0% | |
| TTCGCTGAATATCCTCCACT+TGG | + | chr6_4:15538369-15538388 | Msa0979120:CDS | 45.0% | |
| !! | ACTTGGACGTTTTGCTGTCA+GGG | + | chr6_4:15538386-15538405 | Msa0979120:CDS | 45.0% |
| ATGCGTCAAACTGTTGCTGT+TGG | + | chr6_4:15538411-15538430 | Msa0979120:CDS | 45.0% | |
| !! | TGTTGCTGTTGGTGTCATCA+AGG | + | chr6_4:15538422-15538441 | Msa0979120:CDS | 45.0% |
| !! | GTCATTGGACATGTCGACTC+TGG | + | chr6_4:15536929-15536948 | Msa0979120:CDS | 50.0% |
| CTTAAGGCTGAGCGTGAAAG+AGG | + | chr6_4:15537082-15537101 | Msa0979120:CDS | 50.0% | |
| GACTGTGCAGTAGTACTTGG+TGG | - | chr6_4:15537143-15537162 | None:intergenic | 50.0% | |
| TGCACAGTCATTGATGCACC+TGG | + | chr6_4:15537154-15537173 | Msa0979120:CDS | 50.0% | |
| CATGATTACTGGAACCTCCC+AGG | + | chr6_4:15537198-15537217 | Msa0979120:CDS | 50.0% | |
| !! | ATCATTGACTCCACCACTGG+TGG | + | chr6_4:15537238-15537257 | Msa0979120:CDS | 50.0% |
| AGCTTCAAAACCACCAGTGG+TGG | - | chr6_4:15537251-15537270 | None:intergenic | 50.0% | |
| !!! | ACCACTGGTGGTTTTGAAGC+TGG | + | chr6_4:15537250-15537269 | Msa0979120:CDS | 50.0% |
| ACCAGCTTCAAAACCACCAG+TGG | - | chr6_4:15537254-15537273 | None:intergenic | 50.0% | |
| ! | ATGCAAGAAGAGCGTGCTCA+CGG | - | chr6_4:15537297-15537316 | None:intergenic | 50.0% |
| TACCACCCCTAAGTACTCGA+AGG | + | chr6_4:15537633-15537652 | Msa0979120:CDS | 50.0% | |
| ! | ACCTGGCCTTCGAGTACTTA+GGG | - | chr6_4:15537642-15537661 | None:intergenic | 50.0% |
| ! | TACCTGGCCTTCGAGTACTT+AGG | - | chr6_4:15537643-15537662 | None:intergenic | 50.0% |
| ATTCCCTTCGTTCCCATCTC+CGG | + | chr6_4:15537724-15537743 | Msa0979120:CDS | 50.0% | |
| AATCCGGAGATGGGAACGAA+GGG | - | chr6_4:15537730-15537749 | None:intergenic | 50.0% | |
| AAATCCGGAGATGGGAACGA+AGG | - | chr6_4:15537731-15537750 | None:intergenic | 50.0% | |
| GTTCCCATCTCCGGATTTGA+AGG | + | chr6_4:15537733-15537752 | Msa0979120:CDS | 50.0% | |
| GTCACCTTCAAATCCGGAGA+TGG | - | chr6_4:15537740-15537759 | None:intergenic | 50.0% | |
| CTTGTACCAGTCAAGGTTGG+TGG | - | chr6_4:15537779-15537798 | None:intergenic | 50.0% | |
| CACCAACCTTGACTGGTACA+AGG | + | chr6_4:15537777-15537796 | Msa0979120:CDS | 50.0% | |
| TCCCTTGTACCAGTCAAGGT+TGG | - | chr6_4:15537782-15537801 | None:intergenic | 50.0% | |
| TTGGTCCCTTGTACCAGTCA+AGG | - | chr6_4:15537786-15537805 | None:intergenic | 50.0% | |
| CAAGGGACCAACTCTTCTTG+AGG | + | chr6_4:15537795-15537814 | Msa0979120:CDS | 50.0% | |
| ! | GTCTCTTTGGCTCGTTGATC+TGG | - | chr6_4:15537828-15537847 | None:intergenic | 50.0% |
| TCTTGCAATGGAAGCCTGAG+GGG | - | chr6_4:15537862-15537881 | None:intergenic | 50.0% | |
| CATCTTGCAATGGAAGCCTG+AGG | - | chr6_4:15537864-15537883 | None:intergenic | 50.0% | |
| ! | GGTATTGGAACTGTGCCAGT+TGG | + | chr6_4:15537898-15537917 | Msa0979120:CDS | 50.0% |
| CATACCGGGCTTCACAATAC+CGG | - | chr6_4:15537935-15537954 | None:intergenic | 50.0% | |
| ! | CCCGGTATGGTTGTGACTTT+TGG | + | chr6_4:15537946-15537965 | Msa0979120:CDS | 50.0% |
| ! | GTTGTGACTTTTGGACCCAC+TGG | + | chr6_4:15537955-15537974 | Msa0979120:CDS | 50.0% |
| GCTCTTCCAGGAGACAATGT+CGG | + | chr6_4:15538030-15538049 | Msa0979120:CDS | 50.0% | |
| AGTGAAGTTGGCAGCTTCCT+TGG | - | chr6_4:15538130-15538149 | None:intergenic | 50.0% | |
| GTCATCATCATGAACCACCC+TGG | + | chr6_4:15538156-15538175 | Msa0979120:CDS | 50.0% | |
| ATGAACCACCCTGGACAGAT+CGG | + | chr6_4:15538165-15538184 | Msa0979120:CDS | 50.0% | |
| ATCCGTTTCCGATCTGTCCA+GGG | - | chr6_4:15538176-15538195 | None:intergenic | 50.0% | |
| TATCCGTTTCCGATCTGTCC+AGG | - | chr6_4:15538177-15538196 | None:intergenic | 50.0% | |
| TCACAGCAATGTGAGAGGTG+TGG | - | chr6_4:15538218-15538237 | None:intergenic | 50.0% | |
| ACCAAGATTGACAGGCGATC+TGG | + | chr6_4:15538255-15538274 | Msa0979120:CDS | 50.0% | |
| ACCAGATCGCCTGTCAATCT+TGG | - | chr6_4:15538259-15538278 | None:intergenic | 50.0% | |
| GATTGACAGGCGATCTGGTA+AGG | + | chr6_4:15538260-15538279 | Msa0979120:CDS | 50.0% | |
| ACAGCAAAACGTCCAAGTGG+AGG | - | chr6_4:15538384-15538403 | None:intergenic | 50.0% | |
| CTGACAGCAAAACGTCCAAG+TGG | - | chr6_4:15538387-15538406 | None:intergenic | 50.0% | |
| !! | CACTTGGACGTTTTGCTGTC+AGG | + | chr6_4:15538385-15538404 | Msa0979120:CDS | 50.0% |
| !! | TGTTGGTGTCATCAAGGCTG+TGG | + | chr6_4:15538428-15538447 | Msa0979120:CDS | 50.0% |
| CATCAAGGCTGTGGAGAAGA+AGG | + | chr6_4:15538437-15538456 | Msa0979120:CDS | 50.0% | |
| GTGGAGAAGAAGGATCCTAC+TGG | + | chr6_4:15538447-15538466 | Msa0979120:CDS | 50.0% | |
| GAAGGATCCTACTGGAGCTA+AGG | + | chr6_4:15538455-15538474 | Msa0979120:CDS | 50.0% | |
| ! | TTGGTGACCTTAGCTCCAGT+AGG | - | chr6_4:15538465-15538484 | None:intergenic | 50.0% |
| TACTGGAGCTAAGGTCACCA+AGG | + | chr6_4:15538464-15538483 | Msa0979120:CDS | 50.0% | |
| AACAGCACAATCAGCCTGGG+AGG | - | chr6_4:15537215-15537234 | None:intergenic | 55.0% | |
| ! | TGCAAGAAGAGCGTGCTCAC+GGG | - | chr6_4:15537296-15537315 | None:intergenic | 55.0% |
| ! | CCTGGCCTTCGAGTACTTAG+GGG | - | chr6_4:15537641-15537660 | None:intergenic | 55.0% |
| AGAGGTCCACCAACCTTGAC+TGG | + | chr6_4:15537770-15537789 | Msa0979120:CDS | 55.0% | |
| GGCTTGTCTGTGGGTCTCTT+TGG | - | chr6_4:15537841-15537860 | None:intergenic | 55.0% | |
| CCAGTTGGACGTGTTGAGAC+CGG | + | chr6_4:15537913-15537932 | Msa0979120:CDS | 55.0% | |
| GAGACCGGTATTGTGAAGCC+CGG | + | chr6_4:15537928-15537947 | Msa0979120:CDS | 55.0% | |
| CGGTATTGTGAAGCCCGGTA+TGG | + | chr6_4:15537933-15537952 | Msa0979120:CDS | 55.0% | |
| GTCTGTTGAGATGCACCACG+AGG | + | chr6_4:15537996-15538015 | Msa0979120:CDS | 55.0% | |
| GCTCTCACTGAAGCTCTTCC+AGG | + | chr6_4:15538018-15538037 | Msa0979120:CDS | 55.0% | |
| GCTGTGAAGGATCTCAAGCG+TGG | + | chr6_4:15538072-15538091 | Msa0979120:CDS | 55.0% | |
| TTCCTTGGCAGGGTCATCCT+TGG | - | chr6_4:15538115-15538134 | None:intergenic | 55.0% | |
| AGTTGGCAGCTTCCTTGGCA+GGG | - | chr6_4:15538125-15538144 | None:intergenic | 55.0% | |
| AAGTTGGCAGCTTCCTTGGC+AGG | - | chr6_4:15538126-15538145 | None:intergenic | 55.0% | |
| CACCCTGGACAGATCGGAAA+CGG | + | chr6_4:15538171-15538190 | Msa0979120:CDS | 55.0% | |
| GAGGTGTGGCAATCAAGCAC+TGG | - | chr6_4:15538204-15538223 | None:intergenic | 55.0% | |
| ! | TCAACCACCATGGGCTTGGT+GGG | - | chr6_4:15538345-15538364 | None:intergenic | 55.0% |
| GCGAAGGTCTCAACCACCAT+GGG | - | chr6_4:15538354-15538373 | None:intergenic | 55.0% | |
| AGCGAAGGTCTCAACCACCA+TGG | - | chr6_4:15538355-15538374 | None:intergenic | 55.0% | |
| CTTCTTCTTGGCAGCAGCCT+TGG | - | chr6_4:15538484-15538503 | None:intergenic | 55.0% | |
| GACAGCTTGTGCAGCAACCA+TGG | - | chr6_4:15538517-15538536 | None:intergenic | 55.0% | |
| ACTGGGTTCTTGATCGGCGA+TGG | + | chr6_4:15538631-15538650 | Msa0979120:three_prime_UTR | 55.0% | |
| TCAGTCTCTCTCTGCGGCTG+AGG | + | chr6_4:15535431-15535450 | Msa0979120:five_prime_UTR | 60.0% | |
| GGCCTTCGAGTACTTAGGGG+TGG | - | chr6_4:15537638-15537657 | None:intergenic | 60.0% | |
| CCCCTAAGTACTCGAAGGCC+AGG | + | chr6_4:15537638-15537657 | Msa0979120:CDS | 60.0% | |
| AGCCTGAGGGGCTTGTCTGT+GGG | - | chr6_4:15537850-15537869 | None:intergenic | 60.0% | |
| AAGCCTGAGGGGCTTGTCTG+TGG | - | chr6_4:15537851-15537870 | None:intergenic | 60.0% | |
| CCGGTCTCAACACGTCCAAC+TGG | - | chr6_4:15537916-15537935 | None:intergenic | 60.0% | |
| GAGCTTCAGTGAGAGCCTCG+TGG | - | chr6_4:15538014-15538033 | None:intergenic | 60.0% | |
| GGCAGGGTCATCCTTGGAGT+TGG | - | chr6_4:15538109-15538128 | None:intergenic | 60.0% | |
| CTCCAAGGATGACCCTGCCA+AGG | + | chr6_4:15538110-15538129 | Msa0979120:CDS | 60.0% | |
| CGTTTCCGATCTGTCCAGGG+TGG | - | chr6_4:15538173-15538192 | None:intergenic | 60.0% | |
| GATGGTTCCCACCAAGCCCA+TGG | + | chr6_4:15538335-15538354 | Msa0979120:CDS | 60.0% | |
| CTCAACCACCATGGGCTTGG+TGG | - | chr6_4:15538346-15538365 | None:intergenic | 60.0% | |
| GGTCTCAACCACCATGGGCT+TGG | - | chr6_4:15538349-15538368 | None:intergenic | 60.0% | |
| GACCCACAGACAAGCCCCTC+AGG | + | chr6_4:15537845-15537864 | Msa0979120:CDS | 65.0% | |
| GGTTCCCACCAAGCCCATGG+TGG | + | chr6_4:15538338-15538357 | Msa0979120:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 15535402 | 15538863 | 15535402 | ID=Msa0979120;Name=Msa0979120 |
| chr6_4 | mRNA | 15535402 | 15538863 | 15535402 | ID=Msa0979120-mRNA-1;Parent=Msa0979120;Name=Msa0979120-mRNA-1;_AED=0.14;_eAED=0.14;_QI=103|1|1|1|0.33|0|4|315|447 |
| chr6_4 | exon | 15535402 | 15535493 | 15535402 | ID=Msa0979120-mRNA-1:exon:5064;Parent=Msa0979120-mRNA-1 |
| chr6_4 | exon | 15536885 | 15537357 | 15536885 | ID=Msa0979120-mRNA-1:exon:5065;Parent=Msa0979120-mRNA-1 |
| chr6_4 | exon | 15537625 | 15538518 | 15537625 | ID=Msa0979120-mRNA-1:exon:5066;Parent=Msa0979120-mRNA-1 |
| chr6_4 | exon | 15538561 | 15538863 | 15538561 | ID=Msa0979120-mRNA-1:exon:5067;Parent=Msa0979120-mRNA-1 |
| chr6_4 | five_prime_UTR | 15535402 | 15535493 | 15535402 | ID=Msa0979120-mRNA-1:five_prime_utr;Parent=Msa0979120-mRNA-1 |
| chr6_4 | five_prime_UTR | 15536885 | 15536895 | 15536885 | ID=Msa0979120-mRNA-1:five_prime_utr;Parent=Msa0979120-mRNA-1 |
| chr6_4 | CDS | 15536896 | 15537357 | 15536896 | ID=Msa0979120-mRNA-1:cds;Parent=Msa0979120-mRNA-1 |
| chr6_4 | CDS | 15537625 | 15538506 | 15537625 | ID=Msa0979120-mRNA-1:cds;Parent=Msa0979120-mRNA-1 |
| chr6_4 | three_prime_UTR | 15538507 | 15538518 | 15538507 | ID=Msa0979120-mRNA-1:three_prime_utr;Parent=Msa0979120-mRNA-1 |
| chr6_4 | three_prime_UTR | 15538561 | 15538863 | 15538561 | ID=Msa0979120-mRNA-1:three_prime_utr;Parent=Msa0979120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
