AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0777210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777210 MtrunA17_Chr5g0432451 98.246 228 0 1 11 238 7 230 1.06e-162 449
Msa0777210 MtrunA17_Chr3g0129071 75.817 153 29 3 10 156 6 156 1.70e-80 241
Msa0777210 MtrunA17_Chr5g0438091 59.031 227 52 7 12 237 9 195 2.81e-77 231
Msa0777210 MtrunA17_Chr4g0043421 62.097 124 46 1 46 168 14 137 1.90e-51 165
Msa0777210 MtrunA17_Chr2g0311601 62.185 119 45 0 39 157 5 123 5.64e-51 163
Msa0777210 MtrunA17_Chr5g0437571 68.932 103 32 0 46 148 5 107 3.31e-49 159
Msa0777210 MtrunA17_Chr3g0114061 66.038 106 36 0 43 148 4 109 3.28e-48 156
Msa0777210 MtrunA17_Chr4g0058651 66.667 105 35 0 46 150 10 114 2.48e-46 152
Msa0777210 MtrunA17_Chr3g0106101 53.125 128 58 1 46 173 6 131 7.22e-46 150
Msa0777210 MtrunA17_Chr3g0117121 62.385 109 41 0 46 154 9 117 8.08e-46 151
Msa0777210 MtrunA17_Chr7g0227511 64.762 105 37 0 46 150 10 114 1.24e-45 150
Msa0777210 MtrunA17_Chr6g0449641 56.637 113 49 0 46 158 8 120 9.31e-44 144
Msa0777210 MtrunA17_Chr4g0030001 56.557 122 51 2 35 154 11 132 1.13e-43 145
Msa0777210 MtrunA17_Chr3g0115431 54.918 122 47 1 46 167 8 121 6.03e-43 144
Msa0777210 MtrunA17_Chr1g0200201 51.852 135 62 2 48 179 73 207 3.63e-42 143
Msa0777210 MtrunA17_Chr6g0449651 54.867 113 51 0 46 158 66 178 8.13e-42 141
Msa0777210 MtrunA17_Chr5g0402611 60.000 105 42 0 46 150 7 111 6.11e-41 142
Msa0777210 MtrunA17_Chr7g0245871 63.725 102 36 1 47 147 27 128 8.43e-41 140
Msa0777210 MtrunA17_Chr3g0113891 64.516 93 33 0 48 140 15 107 1.81e-40 137
Msa0777210 MtrunA17_Chr7g0260971 56.250 112 48 1 37 147 4 115 8.12e-40 136
Msa0777210 MtrunA17_Chr5g0437401 58.824 102 42 0 48 149 12 113 1.45e-39 134
Msa0777210 MtrunA17_Chr3g0097221 56.604 106 46 0 46 151 6 111 5.53e-39 136
Msa0777210 MtrunA17_Chr8g0353981 58.491 106 44 0 46 151 6 111 3.24e-38 132
Msa0777210 MtrunA17_Chr7g0225111 51.923 104 50 0 48 151 6 109 2.30e-36 124
Msa0777210 MtrunA17_Chr1g0184281 46.207 145 74 3 47 189 15 157 7.67e-36 126
Msa0777210 MtrunA17_Chr6g0460951 52.778 108 50 1 45 151 38 145 3.29e-35 125
Msa0777210 MtrunA17_Chr8g0351721 54.386 114 51 1 35 147 6 119 3.68e-35 124
Msa0777210 MtrunA17_Chr8g0351701 57.547 106 44 1 47 151 23 128 4.94e-35 124
Msa0777210 MtrunA17_Chr1g0184271 41.573 178 90 5 47 222 12 177 4.35e-34 122
Msa0777210 MtrunA17_Chr5g0444351 49.038 104 53 0 48 151 6 109 3.21e-33 117
Msa0777210 MtrunA17_Chr7g0261031 55.340 103 43 2 46 146 7 108 1.48e-32 118
Msa0777210 MtrunA17_Chr8g0374601 46.087 115 62 0 45 159 24 138 6.88e-32 117
Msa0777210 MtrunA17_Chr5g0435641 54.167 96 43 1 46 140 6 101 3.49e-31 113
Msa0777210 MtrunA17_Chr8g0374581 48.598 107 54 1 45 150 6 112 1.13e-28 108
Msa0777210 MtrunA17_Chr8g0374591 43.925 107 60 0 44 150 5 111 4.42e-28 103
Msa0777210 MtrunA17_Chr7g0245861 54.444 90 38 2 47 133 12 101 3.61e-26 99.0
Msa0777210 MtrunA17_Chr6g0460941 47.191 89 46 1 47 134 7 95 2.48e-25 95.5
Msa0777210 MtrunA17_Chr4g0059901 43.269 104 59 0 44 147 7 110 2.56e-25 100
Msa0777210 MtrunA17_Chr6g0452691 35.772 123 78 1 48 169 10 132 6.21e-24 94.7
Msa0777210 MtrunA17_Chr6g0452671 38.235 102 63 0 43 144 7 108 3.11e-23 93.2
Msa0777210 MtrunA17_Chr6g0452661 38.053 113 65 3 42 150 1 112 4.11e-23 94.0
Msa0777210 MtrunA17_Chr4g0040831 39.175 97 59 0 48 144 16 112 1.24e-21 89.0
Msa0777210 MtrunA17_Chr2g0330201 40.000 105 61 2 44 147 16 119 2.14e-21 90.5
Msa0777210 MtrunA17_Chr8g0342351 36.697 109 67 2 44 151 9 116 1.61e-20 87.4
Msa0777210 MtrunA17_Chr5g0439111 37.168 113 66 3 42 150 1 112 6.26e-20 85.1
Msa0777210 MtrunA17_Chr4g0055441 37.500 104 63 2 48 150 3 105 4.57e-19 80.9
Msa0777210 MtrunA17_Chr2g0326041 63.265 49 18 0 44 92 30 78 4.98e-18 76.3
Msa0777210 MtrunA17_Chr2g0326051 54.688 64 29 0 92 155 5 68 1.49e-17 76.3
Msa0777210 MtrunA17_Chr4g0046201 32.955 88 59 0 46 133 5 92 2.76e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777210 AT2G30340.1 68.712 163 44 4 6 162 6 167 2.64e-73 224
Msa0777210 AT2G30340.2 68.712 163 44 4 6 162 7 168 3.47e-73 224
Msa0777210 AT2G40470.1 68.023 172 47 5 10 175 6 175 1.32e-66 206
Msa0777210 AT2G40470.2 72.973 148 36 2 30 175 5 150 4.86e-65 201
Msa0777210 AT2G30130.1 66.990 103 34 0 46 148 7 109 8.37e-47 154
Msa0777210 AT1G31320.1 64.602 113 40 0 46 158 12 124 1.34e-46 153
Msa0777210 AT1G07900.1 57.143 112 48 0 44 155 30 141 1.34e-44 148
Msa0777210 AT3G27650.1 61.682 107 41 0 44 150 36 142 5.30e-44 145
Msa0777210 AT5G63090.4 52.817 142 60 1 46 187 10 144 6.02e-44 146
Msa0777210 AT5G63090.3 52.817 142 60 1 46 187 10 144 6.02e-44 146
Msa0777210 AT5G63090.2 52.817 142 60 1 46 187 10 144 6.02e-44 146
Msa0777210 AT5G63090.1 52.817 142 60 1 46 187 10 144 6.02e-44 146
Msa0777210 AT2G28500.1 60.952 105 41 0 44 148 52 156 6.94e-44 148
Msa0777210 AT1G16530.1 57.798 109 45 1 44 151 11 119 1.16e-42 142
Msa0777210 AT5G66870.1 60.000 105 42 0 46 150 6 110 4.86e-41 142
Msa0777210 AT2G23660.2 58.095 105 44 0 46 150 4 108 7.57e-41 142
Msa0777210 AT2G23660.3 58.095 105 44 0 46 150 4 108 7.57e-41 142
Msa0777210 AT2G23660.1 58.095 105 44 0 46 150 4 108 7.57e-41 142
Msa0777210 AT1G65620.1 62.963 108 40 0 44 151 6 113 4.53e-40 137
Msa0777210 AT1G65620.4 62.963 108 40 0 44 151 6 113 4.53e-40 137
Msa0777210 AT1G65620.3 62.963 108 40 0 44 151 6 113 4.53e-40 137
Msa0777210 AT1G65620.5 62.963 108 40 0 44 151 6 113 4.53e-40 137
Msa0777210 AT1G65620.2 62.963 108 40 0 44 151 6 113 4.53e-40 137
Msa0777210 AT3G11090.1 61.165 103 40 0 48 150 12 114 6.32e-40 135
Msa0777210 AT4G00210.1 56.757 111 47 1 38 147 2 112 6.87e-38 132
Msa0777210 AT2G42430.1 52.174 115 54 1 38 151 6 120 2.74e-37 131
Msa0777210 AT3G26660.1 54.000 100 46 0 48 147 6 105 5.59e-37 126
Msa0777210 AT3G26620.1 54.000 100 46 0 48 147 6 105 6.71e-37 126
Msa0777210 AT3G03760.1 56.075 107 46 1 46 151 50 156 1.03e-35 128
Msa0777210 AT3G58190.1 52.381 126 48 4 47 170 11 126 5.51e-34 122
Msa0777210 AT5G06080.1 52.778 108 50 1 46 152 6 113 6.36e-34 120
Msa0777210 AT2G31310.1 54.902 102 45 1 46 146 6 107 1.00e-33 120
Msa0777210 AT4G00220.1 60.606 99 38 1 50 147 20 118 4.14e-33 120
Msa0777210 AT2G45420.1 55.556 99 43 1 50 147 40 138 6.44e-32 117
Msa0777210 AT2G45410.1 55.556 99 43 1 50 147 19 117 2.63e-31 114
Msa0777210 AT2G42440.1 52.427 103 46 2 46 146 6 107 6.16e-31 114
Msa0777210 AT3G50510.1 45.714 105 57 0 46 150 11 115 6.92e-28 105
Msa0777210 AT3G50510.2 45.714 105 57 0 46 150 11 115 6.92e-28 105
Msa0777210 AT3G47870.1 39.496 119 65 1 33 151 29 140 2.22e-25 102
Msa0777210 AT5G35900.1 37.255 102 64 0 46 147 4 105 7.10e-22 90.1
Msa0777210 AT1G72980.1 37.500 104 65 0 44 147 10 113 1.29e-20 87.0
Msa0777210 AT3G13850.1 35.849 106 68 0 48 153 37 142 2.69e-20 87.4
Msa0777210 AT1G06280.1 39.362 94 57 0 48 141 25 118 4.58e-19 82.8
Msa0777210 AT4G22700.1 36.190 105 63 3 48 150 6 108 2.23e-15 72.4
Msa0777210 AT2G19820.1 33.708 89 58 1 47 134 12 100 9.14e-14 66.2
Msa0777210 AT5G15060.1 37.079 89 52 2 33 118 3 90 9.69e-12 61.2

Find 33 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTAAGAGATCCTGTTTA+TGG 0.136497 5_2:-56067132 Msa0777210:CDS
ACAAGGGGTTACTGTGTTTA+AGG 0.163285 5_2:+56067673 None:intergenic
CATCTTTATGGTCCAACTTC+TGG 0.211009 5_2:-56067701 Msa0777210:CDS
GCATCTGCTCTTTGTCCTTC+AGG 0.259282 5_2:+56067186 None:intergenic
AAATAGACCTAAACAAAATA+TGG 0.270578 5_2:+56066769 None:intergenic
CAATGTCTCTAAATTGCTAT+TGG 0.302262 5_2:-56067537 Msa0777210:intron
CCTTGTGAATTTGCACTTGT+AGG 0.310303 5_2:+56066976 None:intergenic
AAACAATCAACAAGCATGTT+TGG 0.327582 5_2:-56068010 None:intergenic
ATGGGAAGGAAGCATCTTTA+TGG 0.328269 5_2:-56067713 Msa0777210:CDS
GGGAGAAACTTCTTCTCAAA+TGG 0.345005 5_2:-56067732 Msa0777210:CDS
ATCTTTATGGTCCAACTTCT+GGG 0.351664 5_2:-56067700 Msa0777210:CDS
GTAGTTCTGCTTGTAAAGAT+TGG 0.370016 5_2:+56067073 None:intergenic
TATTTACCTGTCACTGTCTC+TGG 0.409777 5_2:+56067983 None:intergenic
GCACCCATGCATCCATAAAC+AGG 0.433076 5_2:+56067120 None:intergenic
TTTAAGGTTGTCCCAGAAGT+TGG 0.446561 5_2:+56067689 None:intergenic
GGAGAAACTTCTTCTCAAAT+GGG 0.481100 5_2:-56067731 Msa0777210:CDS
GGAGGAGGAGCTGGAGACGG+AGG 0.512178 5_2:+56066916 None:intergenic
GGAGCTAAAGTCGTAGGAAG+AGG 0.531182 5_2:+56066937 None:intergenic
GGCGGAGGAGGAGCTGGAGA+CGG 0.536711 5_2:+56066913 None:intergenic
AAAGTCGTAGGAAGAGGAAG+AGG 0.563824 5_2:+56066943 None:intergenic
AAGACGAAGACAACGACGAA+AGG 0.564521 5_2:+56066860 None:intergenic
GGATGTCCAGAGACAGTGAC+AGG 0.566988 5_2:-56067989 Msa0777210:intron
AATAGCTTACATGCAGCACA+AGG 0.568241 5_2:+56067656 None:intergenic
CCTAAAACAACAATGAGTCA+TGG 0.572377 5_2:-56066814 Msa0777210:CDS
GACGGAGGAGCTAAAGTCGT+AGG 0.577240 5_2:+56066931 None:intergenic
AGATCCTGTTTATGGATGCA+TGG 0.578296 5_2:-56067124 Msa0777210:CDS
AAACTTCTTCTCAAATGGGA+AGG 0.578669 5_2:-56067727 Msa0777210:CDS
AGCAGATGCAGCAAATAGCA+TGG 0.620064 5_2:-56067172 Msa0777210:CDS
TAGCTTACATGCAGCACAAG+GGG 0.625764 5_2:+56067658 None:intergenic
GATCCTGTTTATGGATGCAT+GGG 0.637525 5_2:-56067123 Msa0777210:CDS
CCTACAAGTGCAAATTCACA+AGG 0.642769 5_2:-56066976 Msa0777210:CDS
ATTGAGAAGAAGATGTGCTG+AGG 0.667195 5_2:-56067636 Msa0777210:CDS
ATAGCTTACATGCAGCACAA+GGG 0.685250 5_2:+56067657 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATAGTTATTACTTA+TGG + chr5_2:56067532-56067551 None:intergenic 10.0%
!! AAATAAATAGTTATTACTTA+TGG + chr5_2:56067532-56067551 None:intergenic 10.0%
!!! TTTTATGTAAGAAATGAAAA+GGG + chr5_2:56066842-56066861 None:intergenic 15.0%
!!! TTTTTATGTAAGAAATGAAA+AGG + chr5_2:56066843-56066862 None:intergenic 15.0%
!! AATATATATATTTCTCAACA+AGG - chr5_2:56066934-56066953 Msa0777210:CDS 15.0%
!! AGTTTAATAGTTATTACTTA+TGG + chr5_2:56067503-56067522 None:intergenic 15.0%
!!! TTTTAAATCTATTTTTTAGG+AGG - chr5_2:56067561-56067580 Msa0777210:CDS 15.0%
!!! TTTTATGTAAGAAATGAAAA+GGG + chr5_2:56066842-56066861 None:intergenic 15.0%
!!! TTTTTATGTAAGAAATGAAA+AGG + chr5_2:56066843-56066862 None:intergenic 15.0%
!! AATATATATATTTCTCAACA+AGG - chr5_2:56066934-56066953 Msa0777210:CDS 15.0%
!! AGTTTAATAGTTATTACTTA+TGG + chr5_2:56067503-56067522 None:intergenic 15.0%
!!! TTTTAAATCTATTTTTTAGG+AGG - chr5_2:56067561-56067580 Msa0777210:CDS 15.0%
!! TATTTCATCTAATCTTTCTT+TGG + chr5_2:56067003-56067022 None:intergenic 20.0%
!! ACTAATCTAACGATTAAAAT+TGG - chr5_2:56067433-56067452 Msa0777210:intron 20.0%
!! TATTTCATCTAATCTTTCTT+TGG + chr5_2:56067003-56067022 None:intergenic 20.0%
!! ACTAATCTAACGATTAAAAT+TGG - chr5_2:56067433-56067452 Msa0777210:intron 20.0%
!! TGAGATTTTTACTATGTTCT+TGG - chr5_2:56066882-56066901 Msa0777210:CDS 25.0%
! TATATTTCTCAACAAGGTTA+AGG - chr5_2:56066940-56066959 Msa0777210:CDS 25.0%
!!! CTAATTTTGAGTTATGAGTT+AGG + chr5_2:56067267-56067286 None:intergenic 25.0%
! ATAAATCTAACATCGATACA+CGG - chr5_2:56067319-56067338 Msa0777210:intron 25.0%
!! ATTAGTAAAAACCATTGACT+TGG + chr5_2:56067419-56067438 None:intergenic 25.0%
!!! GGATTTAAAGTTTTAAACAC+TGG + chr5_2:56067482-56067501 None:intergenic 25.0%
!! TGAGATTTTTACTATGTTCT+TGG - chr5_2:56066882-56066901 Msa0777210:CDS 25.0%
! TATATTTCTCAACAAGGTTA+AGG - chr5_2:56066940-56066959 Msa0777210:CDS 25.0%
!!! CTAATTTTGAGTTATGAGTT+AGG + chr5_2:56067267-56067286 None:intergenic 25.0%
! ATAAATCTAACATCGATACA+CGG - chr5_2:56067319-56067338 Msa0777210:intron 25.0%
!! ATTAGTAAAAACCATTGACT+TGG + chr5_2:56067419-56067438 None:intergenic 25.0%
!!! GGATTTAAAGTTTTAAACAC+TGG + chr5_2:56067482-56067501 None:intergenic 25.0%
AATAGCAAAAATCAACTCAG+AGG - chr5_2:56067019-56067038 Msa0777210:CDS 30.0%
ATAGCAAAAATCAACTCAGA+GGG - chr5_2:56067020-56067039 Msa0777210:CDS 30.0%
GTGAAAAATAAGGAGAGAAA+GGG + chr5_2:56067166-56067185 None:intergenic 30.0%
CAATGTCTCTAAATTGCTAT+TGG - chr5_2:56067235-56067254 Msa0777210:intron 30.0%
AAAAGTTATGACCAAGTCAA+TGG - chr5_2:56067405-56067424 Msa0777210:intron 30.0%
AGATTAAGAGATCCTGTTTA+TGG - chr5_2:56067640-56067659 Msa0777210:CDS 30.0%
AATAGCAAAAATCAACTCAG+AGG - chr5_2:56067019-56067038 Msa0777210:CDS 30.0%
ATAGCAAAAATCAACTCAGA+GGG - chr5_2:56067020-56067039 Msa0777210:CDS 30.0%
GTGAAAAATAAGGAGAGAAA+GGG + chr5_2:56067166-56067185 None:intergenic 30.0%
CAATGTCTCTAAATTGCTAT+TGG - chr5_2:56067235-56067254 Msa0777210:intron 30.0%
AAAAGTTATGACCAAGTCAA+TGG - chr5_2:56067405-56067424 Msa0777210:intron 30.0%
AGATTAAGAGATCCTGTTTA+TGG - chr5_2:56067640-56067659 Msa0777210:CDS 30.0%
TAAGAAATGAAAAGGGAGCT+AGG + chr5_2:56066835-56066854 None:intergenic 35.0%
TCTTAGTGCATGATTAGAAG+AGG + chr5_2:56066914-56066933 None:intergenic 35.0%
GGAGAAACTTCTTCTCAAAT+GGG - chr5_2:56067041-56067060 Msa0777210:CDS 35.0%
AAACTTCTTCTCAAATGGGA+AGG - chr5_2:56067045-56067064 Msa0777210:CDS 35.0%
ATCTTTATGGTCCAACTTCT+GGG - chr5_2:56067072-56067091 Msa0777210:CDS 35.0%
GGTGAAAAATAAGGAGAGAA+AGG + chr5_2:56067167-56067186 None:intergenic 35.0%
! TGAACAGCTGCAAATTTTTG+AGG + chr5_2:56067197-56067216 None:intergenic 35.0%
! GCAGCTGTTCATAAAGTTTT+TGG - chr5_2:56067206-56067225 Msa0777210:intron 35.0%
!!! ATTTTTTAGGAGGTACCTGA+AGG - chr5_2:56067571-56067590 Msa0777210:CDS 35.0%
! GTAGTTCTGCTTGTAAAGAT+TGG + chr5_2:56067702-56067721 None:intergenic 35.0%
!! TGAGAAGCCAATACTTTTTG+TGG + chr5_2:56067883-56067902 None:intergenic 35.0%
!!! TGACTCATTGTTGTTTTAGG+TGG + chr5_2:56067958-56067977 None:intergenic 35.0%
!!! CCATGACTCATTGTTGTTTT+AGG + chr5_2:56067961-56067980 None:intergenic 35.0%
CCTAAAACAACAATGAGTCA+TGG - chr5_2:56067958-56067977 Msa0777210:intron 35.0%
TAAGAAATGAAAAGGGAGCT+AGG + chr5_2:56066835-56066854 None:intergenic 35.0%
TCTTAGTGCATGATTAGAAG+AGG + chr5_2:56066914-56066933 None:intergenic 35.0%
GGAGAAACTTCTTCTCAAAT+GGG - chr5_2:56067041-56067060 Msa0777210:CDS 35.0%
AAACTTCTTCTCAAATGGGA+AGG - chr5_2:56067045-56067064 Msa0777210:CDS 35.0%
ATCTTTATGGTCCAACTTCT+GGG - chr5_2:56067072-56067091 Msa0777210:CDS 35.0%
GGTGAAAAATAAGGAGAGAA+AGG + chr5_2:56067167-56067186 None:intergenic 35.0%
! TGAACAGCTGCAAATTTTTG+AGG + chr5_2:56067197-56067216 None:intergenic 35.0%
! GCAGCTGTTCATAAAGTTTT+TGG - chr5_2:56067206-56067225 Msa0777210:intron 35.0%
!!! ATTTTTTAGGAGGTACCTGA+AGG - chr5_2:56067571-56067590 Msa0777210:CDS 35.0%
! GTAGTTCTGCTTGTAAAGAT+TGG + chr5_2:56067702-56067721 None:intergenic 35.0%
!! TGAGAAGCCAATACTTTTTG+TGG + chr5_2:56067883-56067902 None:intergenic 35.0%
!!! TGACTCATTGTTGTTTTAGG+TGG + chr5_2:56067958-56067977 None:intergenic 35.0%
!!! CCATGACTCATTGTTGTTTT+AGG + chr5_2:56067961-56067980 None:intergenic 35.0%
CCTAAAACAACAATGAGTCA+TGG - chr5_2:56067958-56067977 Msa0777210:intron 35.0%
TATTTACCTGTCACTGTCTC+TGG + chr5_2:56066792-56066811 None:intergenic 40.0%
GGGAGAAACTTCTTCTCAAA+TGG - chr5_2:56067040-56067059 Msa0777210:CDS 40.0%
!! ATGGGAAGGAAGCATCTTTA+TGG - chr5_2:56067059-56067078 Msa0777210:CDS 40.0%
CATCTTTATGGTCCAACTTC+TGG - chr5_2:56067071-56067090 Msa0777210:CDS 40.0%
! TTTAAGGTTGTCCCAGAAGT+TGG + chr5_2:56067086-56067105 None:intergenic 40.0%
ACAAGGGGTTACTGTGTTTA+AGG + chr5_2:56067102-56067121 None:intergenic 40.0%
ATAGCTTACATGCAGCACAA+GGG + chr5_2:56067118-56067137 None:intergenic 40.0%
AATAGCTTACATGCAGCACA+AGG + chr5_2:56067119-56067138 None:intergenic 40.0%
ATTGAGAAGAAGATGTGCTG+AGG - chr5_2:56067136-56067155 Msa0777210:CDS 40.0%
ATCTAACATCGATACACGGT+CGG - chr5_2:56067323-56067342 Msa0777210:intron 40.0%
AGATCCTGTTTATGGATGCA+TGG - chr5_2:56067648-56067667 Msa0777210:CDS 40.0%
GATCCTGTTTATGGATGCAT+GGG - chr5_2:56067649-56067668 Msa0777210:CDS 40.0%
CCTTGTGAATTTGCACTTGT+AGG + chr5_2:56067799-56067818 None:intergenic 40.0%
CCTACAAGTGCAAATTCACA+AGG - chr5_2:56067796-56067815 Msa0777210:intron 40.0%
!! GAAGCCAATACTTTTTGTGG+CGG + chr5_2:56067880-56067899 None:intergenic 40.0%
TATTTACCTGTCACTGTCTC+TGG + chr5_2:56066792-56066811 None:intergenic 40.0%
GGGAGAAACTTCTTCTCAAA+TGG - chr5_2:56067040-56067059 Msa0777210:CDS 40.0%
!! ATGGGAAGGAAGCATCTTTA+TGG - chr5_2:56067059-56067078 Msa0777210:CDS 40.0%
CATCTTTATGGTCCAACTTC+TGG - chr5_2:56067071-56067090 Msa0777210:CDS 40.0%
! TTTAAGGTTGTCCCAGAAGT+TGG + chr5_2:56067086-56067105 None:intergenic 40.0%
ACAAGGGGTTACTGTGTTTA+AGG + chr5_2:56067102-56067121 None:intergenic 40.0%
ATAGCTTACATGCAGCACAA+GGG + chr5_2:56067118-56067137 None:intergenic 40.0%
AATAGCTTACATGCAGCACA+AGG + chr5_2:56067119-56067138 None:intergenic 40.0%
ATTGAGAAGAAGATGTGCTG+AGG - chr5_2:56067136-56067155 Msa0777210:CDS 40.0%
ATCTAACATCGATACACGGT+CGG - chr5_2:56067323-56067342 Msa0777210:intron 40.0%
AGATCCTGTTTATGGATGCA+TGG - chr5_2:56067648-56067667 Msa0777210:CDS 40.0%
GATCCTGTTTATGGATGCAT+GGG - chr5_2:56067649-56067668 Msa0777210:CDS 40.0%
CCTTGTGAATTTGCACTTGT+AGG + chr5_2:56067799-56067818 None:intergenic 40.0%
CCTACAAGTGCAAATTCACA+AGG - chr5_2:56067796-56067815 Msa0777210:intron 40.0%
!! GAAGCCAATACTTTTTGTGG+CGG + chr5_2:56067880-56067899 None:intergenic 40.0%
TAGCTTACATGCAGCACAAG+GGG + chr5_2:56067117-56067136 None:intergenic 45.0%
GGCTCGTGTGGTGAAAAATA+AGG + chr5_2:56067176-56067195 None:intergenic 45.0%
!!! GCAAATTTTTGAGGCTCGTG+TGG + chr5_2:56067188-56067207 None:intergenic 45.0%
AGCAGATGCAGCAAATAGCA+TGG - chr5_2:56067600-56067619 Msa0777210:CDS 45.0%
AAAGTCGTAGGAAGAGGAAG+AGG + chr5_2:56067832-56067851 None:intergenic 45.0%
!! AATACTTTTTGTGGCGGAGG+AGG + chr5_2:56067874-56067893 None:intergenic 45.0%
! TCCTCCGCCACAAAAAGTAT+TGG - chr5_2:56067873-56067892 Msa0777210:intron 45.0%
AAGACGAAGACAACGACGAA+AGG + chr5_2:56067915-56067934 None:intergenic 45.0%
TAGCTTACATGCAGCACAAG+GGG + chr5_2:56067117-56067136 None:intergenic 45.0%
GGCTCGTGTGGTGAAAAATA+AGG + chr5_2:56067176-56067195 None:intergenic 45.0%
!!! GCAAATTTTTGAGGCTCGTG+TGG + chr5_2:56067188-56067207 None:intergenic 45.0%
AGCAGATGCAGCAAATAGCA+TGG - chr5_2:56067600-56067619 Msa0777210:CDS 45.0%
AAAGTCGTAGGAAGAGGAAG+AGG + chr5_2:56067832-56067851 None:intergenic 45.0%
!! AATACTTTTTGTGGCGGAGG+AGG + chr5_2:56067874-56067893 None:intergenic 45.0%
! TCCTCCGCCACAAAAAGTAT+TGG - chr5_2:56067873-56067892 Msa0777210:intron 45.0%
AAGACGAAGACAACGACGAA+AGG + chr5_2:56067915-56067934 None:intergenic 45.0%
!!! AAATTTTAAATCTATTTTTT+AGG - chr5_2:56067558-56067577 Msa0777210:CDS 5.0%
!!! AAATTTTAAATCTATTTTTT+AGG - chr5_2:56067558-56067577 Msa0777210:CDS 5.0%
ACATCGATACACGGTCGGTT+AGG - chr5_2:56067328-56067347 Msa0777210:intron 50.0%
GCATCTGCTCTTTGTCCTTC+AGG + chr5_2:56067589-56067608 None:intergenic 50.0%
GCACCCATGCATCCATAAAC+AGG + chr5_2:56067655-56067674 None:intergenic 50.0%
GGAGCTAAAGTCGTAGGAAG+AGG + chr5_2:56067838-56067857 None:intergenic 50.0%
!! GCCAATACTTTTTGTGGCGG+AGG + chr5_2:56067877-56067896 None:intergenic 50.0%
ACATCGATACACGGTCGGTT+AGG - chr5_2:56067328-56067347 Msa0777210:intron 50.0%
GCATCTGCTCTTTGTCCTTC+AGG + chr5_2:56067589-56067608 None:intergenic 50.0%
GCACCCATGCATCCATAAAC+AGG + chr5_2:56067655-56067674 None:intergenic 50.0%
GGAGCTAAAGTCGTAGGAAG+AGG + chr5_2:56067838-56067857 None:intergenic 50.0%
!! GCCAATACTTTTTGTGGCGG+AGG + chr5_2:56067877-56067896 None:intergenic 50.0%
GGATGTCCAGAGACAGTGAC+AGG - chr5_2:56066783-56066802 Msa0777210:CDS 55.0%
GACGGAGGAGCTAAAGTCGT+AGG + chr5_2:56067844-56067863 None:intergenic 55.0%
GGATGTCCAGAGACAGTGAC+AGG - chr5_2:56066783-56066802 Msa0777210:CDS 55.0%
GACGGAGGAGCTAAAGTCGT+AGG + chr5_2:56067844-56067863 None:intergenic 55.0%
!! TTTTGTGGCGGAGGAGGAGC+TGG + chr5_2:56067868-56067887 None:intergenic 60.0%
!! TTTTGTGGCGGAGGAGGAGC+TGG + chr5_2:56067868-56067887 None:intergenic 60.0%
GGAGGAGGAGCTGGAGACGG+AGG + chr5_2:56067859-56067878 None:intergenic 70.0%
GGCGGAGGAGGAGCTGGAGA+CGG + chr5_2:56067862-56067881 None:intergenic 70.0%
GGAGGAGGAGCTGGAGACGG+AGG + chr5_2:56067859-56067878 None:intergenic 70.0%
GGCGGAGGAGGAGCTGGAGA+CGG + chr5_2:56067862-56067881 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 56066777 56068017 56066777 ID=Msa0777210;Name=Msa0777210
chr5_2 mRNA 56066777 56068017 56066777 ID=Msa0777210-mRNA-1;Parent=Msa0777210;Name=Msa0777210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|238
chr5_2 exon 56067990 56068017 56067990 ID=Msa0777210-mRNA-1:exon:16572;Parent=Msa0777210-mRNA-1
chr5_2 exon 56067538 56067788 56067538 ID=Msa0777210-mRNA-1:exon:16571;Parent=Msa0777210-mRNA-1
chr5_2 exon 56066777 56067214 56066777 ID=Msa0777210-mRNA-1:exon:16570;Parent=Msa0777210-mRNA-1
chr5_2 CDS 56067990 56068017 56067990 ID=Msa0777210-mRNA-1:cds;Parent=Msa0777210-mRNA-1
chr5_2 CDS 56067538 56067788 56067538 ID=Msa0777210-mRNA-1:cds;Parent=Msa0777210-mRNA-1
chr5_2 CDS 56066777 56067214 56066777 ID=Msa0777210-mRNA-1:cds;Parent=Msa0777210-mRNA-1
Gene Sequence

>Msa0777210

ATGTTTGGATGTCCAGAGACAGTGACAGAAAGATTAGATGAAATAGCAAAAATCAACTCAGAGGGAGAAACTTCTTCTCAAATGGGAAGGAAGCATCTTTATGGTCCAACTTCTGGGACAACCTTAAACACAGTAACCCCTTGTGCTGCATGTAAGCTATTGAGAAGAAGATGTGCTGAGGAATGCCCTTTCTCTCCTTATTTTTCACCACACGAGCCTCAAAAATTTGCAGCTGTTCATAAAGTTTTTGGTGCTAGCAATGTCTCTAAATTGCTATTGGAGGTACCTGAAGGACAAAGAGCAGATGCAGCAAATAGCATGGTTTATGAAGCTAATTTAAGATTAAGAGATCCTGTTTATGGATGCATGGGTGCAATATCATCATTACAACAACAAGTCCAATCTTTACAAGCAGAACTACATGCAGTAAGAACAGAGCTACTAAAATACAAATATAGAGAAGCAGCTAGTTTCATTTCTTCTCAAGTATCAATGCCTACAAGTGCAAATTCACAAGGTCTTTCTCAACCTCTTCCTCTTCCTACGACTTTAGCTCCTCCGTCTCCAGCTCCTCCTCCGCCACAAAAAGTATTGGCTTCTCAATCTATTATCCTTTCGTCGTTGTCTTCGTCTTCAACTTCATCTGTTTACACTCCACCTAAAACAACAATGAGTCATGGATCTATTTCTAGTGAAAATATTCCATATTTTGTTTAG

Protein sequence

>Msa0777210

MFGCPETVTERLDEIAKINSEGETSSQMGRKHLYGPTSGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISSLQQQVQSLQAELHAVRTELLKYKYREAASFISSQVSMPTSANSQGLSQPLPLPTTLAPPSPAPPPPQKVLASQSIILSSLSSSSTSSVYTPPKTTMSHGSISSENIPYFV*