AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1008730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008730 MtrunA17_Chr7g0219021 95.161 124 6 0 1 124 1 124 3.75e-83 244
Msa1008730 MtrunA17_Chr7g0219031 79.245 106 22 0 1 106 1 106 1.13e-61 185
Msa1008730 MtrunA17_Chr4g0061451 66.129 124 38 2 1 121 1 123 2.02e-49 159
Msa1008730 MtrunA17_Chr3g0086861 58.594 128 49 2 1 124 1 128 4.31e-47 158
Msa1008730 MtrunA17_Chr3g0121631 51.261 119 53 2 1 119 1 114 1.54e-37 125
Msa1008730 MtrunA17_Chr4g0035001 53.947 76 35 0 41 116 7 82 6.03e-27 99.0
Msa1008730 MtrunA17_Chr4g0035051 51.316 76 37 0 41 116 9 84 2.53e-25 93.6
Msa1008730 MtrunA17_Chr3g0119311 43.299 97 49 1 41 131 37 133 3.57e-25 93.6
Msa1008730 MtrunA17_Chr4g0035031 48.684 76 39 0 41 116 9 84 8.76e-24 91.7
Msa1008730 MtrunA17_Chr7g0263001 40.984 122 61 2 1 119 1 114 1.84e-23 89.4
Msa1008730 MtrunA17_Chr4g0031091 39.560 91 55 0 26 116 19 109 3.39e-23 87.8
Msa1008730 MtrunA17_Chr7g0266751 45.882 85 46 0 41 125 33 117 8.86e-23 87.4
Msa1008730 MtrunA17_Chr4g0058151 39.623 106 64 0 19 124 195 300 3.67e-21 87.0
Msa1008730 MtrunA17_Chr4g0058151 39.785 93 56 0 41 133 123 215 3.27e-16 73.6
Msa1008730 MtrunA17_Chr2g0278661 47.368 76 40 0 41 116 8 83 1.23e-20 84.7
Msa1008730 MtrunA17_Chr3g0116631 37.500 96 55 1 28 123 199 289 2.22e-20 84.7
Msa1008730 MtrunA17_Chr3g0116631 37.778 90 55 1 34 122 103 192 3.91e-12 62.0
Msa1008730 MtrunA17_Chr4g0042161 43.023 86 49 0 38 123 49 134 3.51e-20 80.9
Msa1008730 MtrunA17_Chr3g0101061 41.964 112 52 3 19 119 8 117 7.42e-19 82.0
Msa1008730 MtrunA17_Chr1g0181111 40.476 84 50 0 41 124 197 280 2.42e-18 79.0
Msa1008730 MtrunA17_Chr1g0181111 41.892 74 43 0 41 114 85 158 5.86e-11 58.9
Msa1008730 MtrunA17_Chr1g0168601 44.737 76 42 0 41 116 154 229 2.57e-18 78.2
Msa1008730 MtrunA17_Chr1g0168601 37.879 66 40 1 57 122 79 143 3.78e-11 58.9
Msa1008730 MtrunA17_Chr4g0050781 41.463 82 44 1 41 122 8 85 6.81e-18 76.6
Msa1008730 MtrunA17_Chr2g0290191 44.578 83 44 1 37 119 1 81 2.04e-17 77.8
Msa1008730 MtrunA17_Chr2g0290191 33.333 120 71 3 33 144 99 217 3.65e-12 62.8
Msa1008730 MtrunA17_Chr5g0447761 49.383 81 39 1 39 119 5 83 2.26e-17 77.8
Msa1008730 MtrunA17_Chr5g0447761 35.443 79 50 1 41 119 107 184 5.40e-11 59.3
Msa1008730 MtrunA17_Chr7g0267571 44.186 86 48 0 38 123 210 295 4.03e-17 76.3
Msa1008730 MtrunA17_Chr7g0267571 36.842 76 48 0 41 116 110 185 1.25e-12 63.9
Msa1008730 MtrunA17_Chr1g0210241 41.772 79 46 0 41 119 8 86 5.06e-17 75.5
Msa1008730 MtrunA17_Chr3g0127751 32.110 109 73 1 23 131 9 116 1.40e-16 73.9
Msa1008730 MtrunA17_Chr6g0481071 36.250 80 51 0 41 120 96 175 2.72e-16 72.0
Msa1008730 MtrunA17_Chr3g0088511 40.625 96 52 3 23 114 12 106 5.20e-16 70.1
Msa1008730 MtrunA17_Chr3g0144311 37.500 96 54 3 31 121 16 110 9.84e-16 72.0
Msa1008730 MtrunA17_Chr7g0276531 40.741 81 47 1 41 121 19 98 1.33e-15 71.2
Msa1008730 MtrunA17_Chr8g0346011 42.308 78 44 1 40 117 37 113 1.49e-15 71.6
Msa1008730 MtrunA17_Chr3g0135111 41.414 99 56 1 40 138 10 106 1.54e-15 72.0
Msa1008730 MtrunA17_Chr1g0186351 41.772 79 44 1 41 119 7 83 1.71e-15 72.4
Msa1008730 MtrunA17_Chr1g0186351 38.202 89 53 2 36 123 108 195 3.22e-13 65.9
Msa1008730 MtrunA17_Chr5g0426311 41.558 77 44 1 41 117 17 92 2.29e-15 70.9
Msa1008730 MtrunA17_Chr1g0198431 31.858 113 76 1 17 129 169 280 2.58e-15 70.9
Msa1008730 MtrunA17_Chr4g0017401 37.500 96 49 4 41 128 17 109 3.93e-15 70.1
Msa1008730 MtrunA17_Chr4g0042151 41.026 78 46 0 42 119 46 123 4.02e-15 68.9
Msa1008730 MtrunA17_Chr4g0070231 40.260 77 46 0 42 118 133 209 5.48e-15 70.9
Msa1008730 MtrunA17_Chr5g0419351 36.364 99 59 2 42 139 12 107 6.41e-15 67.8
Msa1008730 MtrunA17_Chr1g0177101 35.294 85 55 0 38 122 205 289 1.02e-14 69.7
Msa1008730 MtrunA17_Chr1g0177101 35.632 87 56 0 30 116 98 184 3.92e-12 62.4
Msa1008730 MtrunA17_Chr8g0360551 33.621 116 62 3 6 116 43 148 1.57e-14 69.3
Msa1008730 MtrunA17_Chr8g0344491 38.961 77 47 0 42 118 149 225 2.11e-14 68.9
Msa1008730 MtrunA17_Chr6g0449481 33.913 115 73 3 7 119 99 212 3.47e-14 68.6
Msa1008730 MtrunA17_Chr3g0110211 41.975 81 46 1 40 119 112 192 3.68e-14 68.2
Msa1008730 MtrunA17_Chr8g0375101 38.554 83 49 1 37 119 1 81 5.77e-14 67.8
Msa1008730 MtrunA17_Chr5g0402191 38.554 83 49 1 37 119 1 81 1.85e-13 66.2
Msa1008730 MtrunA17_Chr3g0139111 37.179 78 49 0 41 118 146 223 1.86e-13 66.2
Msa1008730 MtrunA17_Chr4g0018581 37.805 82 51 0 35 116 446 527 2.01e-13 66.6
Msa1008730 MtrunA17_Chr4g0065741 38.372 86 49 1 38 123 69 150 2.35e-13 63.5
Msa1008730 MtrunA17_Chr2g0327921 35.000 80 52 0 40 119 7 86 2.41e-13 62.0
Msa1008730 MtrunA17_Chr4g0068631 40.698 86 47 3 40 121 88 173 2.50e-13 66.2
Msa1008730 MtrunA17_Chr4g0038111 38.095 105 63 2 34 138 333 435 3.01e-13 65.9
Msa1008730 MtrunA17_Chr7g0259641 33.043 115 73 2 7 119 240 352 1.01e-12 64.3
Msa1008730 MtrunA17_Chr7g0276201 33.333 87 58 0 35 121 99 185 2.92e-12 63.2
Msa1008730 MtrunA17_Chr5g0430471 32.000 75 51 0 39 113 38 112 3.07e-12 60.5
Msa1008730 MtrunA17_Chr7g0259671 33.028 109 69 2 7 113 246 352 3.76e-12 62.8
Msa1008730 MtrunA17_Chr1g0163591 37.209 86 52 2 35 120 157 240 6.58e-12 62.0
Msa1008730 MtrunA17_Chr1g0201001 31.461 89 61 0 28 116 17 105 9.34e-12 61.6
Msa1008730 MtrunA17_Chr2g0328791 33.696 92 54 2 28 117 8 94 1.18e-11 61.2
Msa1008730 MtrunA17_Chr2g0328791 34.524 84 54 1 42 124 110 193 7.35e-11 58.9
Msa1008730 MtrunA17_Chr0c09g0493511 35.106 94 57 2 34 124 25 117 1.28e-11 61.2
Msa1008730 MtrunA17_Chr3g0120721 38.961 77 45 1 38 114 16 90 1.74e-11 60.5
Msa1008730 MtrunA17_Chr1g0153871 36.957 92 57 1 42 132 192 283 2.05e-11 60.5
Msa1008730 MtrunA17_Chr7g0268551 35.714 84 53 1 40 123 348 430 2.15e-11 60.5
Msa1008730 MtrunA17_Chr4g0050441 37.333 75 47 0 42 116 18 92 2.79e-11 59.7
Msa1008730 MtrunA17_Chr8g0372111 29.348 92 65 0 20 111 398 489 2.79e-11 60.5
Msa1008730 MtrunA17_Chr6g0465691 35.106 94 57 2 34 124 25 117 2.90e-11 60.1
Msa1008730 MtrunA17_Chr4g0062931 34.737 95 56 2 40 134 7 95 3.61e-11 60.1
Msa1008730 MtrunA17_Chr6g0465751 35.106 94 57 2 34 124 107 199 3.90e-11 59.7
Msa1008730 MtrunA17_Chr6g0466501 35.106 94 57 2 34 124 107 199 3.97e-11 59.7
Msa1008730 MtrunA17_Chr4g0045921 33.333 105 55 3 10 109 50 144 4.07e-11 59.7
Msa1008730 MtrunA17_Chr3g0133651 36.957 92 57 1 42 132 189 280 4.14e-11 59.7
Msa1008730 MtrunA17_Chr3g0133651 33.884 121 65 4 27 140 281 393 9.03e-11 58.5
Msa1008730 MtrunA17_Chr5g0429941 37.333 75 47 0 42 116 18 92 6.49e-11 58.5
Msa1008730 MtrunA17_Chr4g0045221 30.702 114 76 2 35 147 209 320 9.87e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008730 AT5G61030.2 59.664 119 48 0 1 119 1 119 2.70e-49 160
Msa1008730 AT5G61030.1 59.664 119 48 0 1 119 1 119 2.70e-49 160
Msa1008730 AT1G74230.1 58.475 118 42 3 1 118 1 111 3.12e-42 142
Msa1008730 AT3G23830.2 45.833 120 60 2 1 120 1 115 7.63e-33 113
Msa1008730 AT3G23830.1 45.833 120 60 2 1 120 1 115 7.63e-33 113
Msa1008730 AT4G13850.4 47.059 119 58 2 1 119 1 114 1.35e-32 112
Msa1008730 AT4G13850.3 47.059 119 58 2 1 119 1 114 1.80e-32 112
Msa1008730 AT4G13850.2 47.059 119 58 2 1 119 1 114 2.33e-32 112
Msa1008730 AT4G13850.1 47.059 119 58 2 1 119 1 114 2.67e-32 112
Msa1008730 AT5G06210.1 49.074 108 53 1 23 130 17 122 2.56e-29 104
Msa1008730 AT4G39260.3 45.556 90 45 1 41 130 7 92 1.77e-24 90.9
Msa1008730 AT2G21660.2 51.316 76 37 0 41 116 9 84 2.96e-24 92.4
Msa1008730 AT2G21660.1 51.316 76 37 0 41 116 9 84 4.51e-24 92.4
Msa1008730 AT1G18630.1 46.591 88 47 0 29 116 25 112 7.95e-24 90.9
Msa1008730 AT5G59865.1 45.833 96 51 1 24 119 11 105 9.02e-23 87.0
Msa1008730 AT4G39260.2 47.368 76 40 0 41 116 7 82 1.52e-22 87.0
Msa1008730 AT3G08000.1 44.762 105 55 1 20 121 18 122 2.78e-22 86.7
Msa1008730 AT4G39260.1 47.368 76 40 0 41 116 7 82 4.50e-22 87.0
Msa1008730 AT5G47320.1 38.983 118 63 2 1 118 1 109 4.54e-21 85.5
Msa1008730 AT3G26420.1 46.591 88 43 1 41 128 8 91 1.11e-20 85.1
Msa1008730 AT5G50250.1 41.975 81 47 0 41 121 208 288 3.90e-20 84.3
Msa1008730 AT5G50250.1 42.857 84 47 1 40 122 113 196 2.81e-15 71.2
Msa1008730 AT4G24770.1 42.500 80 46 0 41 120 245 324 6.45e-20 84.3
Msa1008730 AT4G24770.1 39.286 84 50 1 40 122 150 233 1.83e-13 66.6
Msa1008730 AT4G24770.2 42.500 80 46 0 41 120 245 324 6.45e-20 84.3
Msa1008730 AT4G24770.2 39.286 84 50 1 40 122 150 233 1.83e-13 66.6
Msa1008730 AT2G37510.1 44.304 79 44 0 36 114 30 108 7.90e-20 80.5
Msa1008730 AT2G37220.1 43.902 82 44 1 41 122 205 284 1.11e-19 83.2
Msa1008730 AT2G37220.1 43.243 74 42 0 41 114 92 165 5.09e-14 67.8
Msa1008730 AT4G13860.1 49.333 75 38 0 39 113 2 76 2.83e-19 77.4
Msa1008730 AT3G53460.1 42.353 85 47 1 41 125 258 340 8.58e-19 81.3
Msa1008730 AT3G53460.1 43.243 74 42 0 41 114 100 173 3.97e-11 60.1
Msa1008730 AT3G53460.3 42.353 85 47 1 41 125 258 340 8.58e-19 81.3
Msa1008730 AT3G53460.3 43.243 74 42 0 41 114 100 173 3.97e-11 60.1
Msa1008730 AT3G53460.2 42.353 85 47 1 41 125 258 340 8.58e-19 81.3
Msa1008730 AT3G53460.2 43.243 74 42 0 41 114 100 173 3.97e-11 60.1
Msa1008730 AT3G53460.4 42.353 85 47 1 41 125 279 361 9.63e-19 81.3
Msa1008730 AT2G27330.1 38.318 107 57 3 27 127 11 114 1.05e-18 76.6
Msa1008730 AT5G55550.2 51.899 79 36 1 41 119 7 83 1.13e-18 81.6
Msa1008730 AT5G55550.3 51.899 79 36 1 41 119 7 83 1.13e-18 81.6
Msa1008730 AT5G55550.6 51.899 79 36 1 41 119 7 83 1.13e-18 81.6
Msa1008730 AT5G55550.11 51.899 79 36 1 41 119 7 83 1.13e-18 81.6
Msa1008730 AT5G55550.5 51.899 79 36 1 41 119 7 83 1.16e-18 81.6
Msa1008730 AT5G55550.4 51.899 79 36 1 41 119 7 83 1.16e-18 81.6
Msa1008730 AT5G55550.9 51.899 79 36 1 41 119 7 83 1.16e-18 81.6
Msa1008730 AT5G55550.7 51.899 79 36 1 41 119 7 83 1.16e-18 81.6
Msa1008730 AT5G55550.1 51.899 79 36 1 41 119 7 83 1.16e-18 81.6
Msa1008730 AT5G54580.1 44.086 93 49 1 27 119 46 135 1.18e-18 77.8
Msa1008730 AT4G26650.1 49.367 79 38 1 41 119 16 92 3.30e-18 80.5
Msa1008730 AT1G22330.1 41.667 108 60 3 41 146 18 124 3.44e-18 79.3
Msa1008730 AT4G26650.2 49.367 79 38 1 41 119 13 89 3.92e-18 80.1
Msa1008730 AT3G52380.1 44.706 85 47 0 38 122 217 301 5.32e-18 79.0
Msa1008730 AT3G52380.1 40.789 76 45 0 41 116 117 192 5.14e-15 70.9
Msa1008730 AT2G46780.1 41.176 85 46 2 41 122 23 106 6.49e-18 79.0
Msa1008730 AT2G46780.2 41.176 85 46 2 41 122 23 106 6.49e-18 79.0
Msa1008730 AT5G55550.8 54.930 71 30 1 41 111 7 75 9.92e-18 79.0
Msa1008730 AT5G55550.10 54.930 71 30 1 41 111 7 75 1.03e-17 79.0
Msa1008730 AT5G04280.1 41.905 105 55 2 40 144 7 105 2.58e-17 77.0
Msa1008730 AT1G76460.1 42.353 85 47 2 41 124 25 108 2.89e-17 76.6
Msa1008730 AT3G46020.1 38.144 97 58 1 39 133 6 102 3.18e-17 72.4
Msa1008730 AT3G07810.1 45.570 79 41 1 41 119 7 83 3.36e-17 77.4
Msa1008730 AT3G07810.2 45.570 79 41 1 41 119 7 83 3.50e-17 77.4
Msa1008730 AT4G39260.4 45.161 62 34 0 41 102 7 68 1.05e-16 71.2
Msa1008730 AT5G47620.1 44.578 83 44 1 37 119 3 83 1.48e-16 75.5
Msa1008730 AT5G47620.1 30.702 114 76 3 8 119 72 184 3.33e-11 60.5
Msa1008730 AT5G47620.2 44.578 83 44 1 37 119 3 83 1.48e-16 75.5
Msa1008730 AT5G47620.2 30.702 114 76 3 8 119 72 184 3.33e-11 60.5
Msa1008730 AT5G47620.5 44.578 83 44 1 37 119 3 83 1.48e-16 75.5
Msa1008730 AT5G47620.5 30.702 114 76 3 8 119 72 184 3.33e-11 60.5
Msa1008730 AT1G78260.1 42.857 77 43 1 41 117 18 93 1.52e-16 74.7
Msa1008730 AT1G78260.2 42.308 78 44 1 40 117 17 93 1.82e-16 74.3
Msa1008730 AT1G20880.2 42.857 84 44 3 41 122 25 106 2.00e-16 74.3
Msa1008730 AT1G20880.3 42.857 84 44 3 41 122 25 106 2.00e-16 74.3
Msa1008730 AT1G20880.1 42.857 84 44 3 41 122 25 106 2.00e-16 74.3
Msa1008730 AT1G60000.1 38.824 85 52 0 32 116 169 253 2.45e-16 73.6
Msa1008730 AT2G33410.1 45.570 79 41 1 41 119 7 83 4.99e-16 73.9
Msa1008730 AT1G60650.2 38.679 106 59 2 39 142 11 112 5.63e-16 73.2
Msa1008730 AT1G60650.1 38.679 106 59 2 39 142 11 112 5.63e-16 73.2
Msa1008730 AT1G22910.2 37.634 93 52 3 41 129 14 104 5.93e-16 72.4
Msa1008730 AT1G22910.1 37.234 94 53 3 40 129 13 104 7.68e-16 72.4
Msa1008730 AT4G13860.2 55.932 59 26 0 56 114 2 60 9.35e-16 67.8
Msa1008730 AT2G21690.1 43.056 72 41 0 42 113 9 80 1.57e-15 68.6
Msa1008730 AT1G22910.3 37.634 93 52 3 41 129 14 104 1.59e-15 72.4
Msa1008730 AT1G33470.2 37.209 86 48 3 41 122 8 91 3.11e-15 70.5
Msa1008730 AT1G33470.1 37.209 86 48 3 41 122 8 91 3.25e-15 70.5
Msa1008730 AT1G33470.3 37.209 86 48 3 41 122 8 91 3.29e-15 70.5
Msa1008730 AT3G14100.1 37.662 77 48 0 42 118 146 222 3.80e-15 71.6
Msa1008730 AT5G47620.4 45.333 75 39 1 37 111 3 75 5.72e-15 71.2
Msa1008730 AT4G14300.1 44.304 79 42 1 41 119 7 83 6.37e-15 70.9
Msa1008730 AT4G14300.2 44.304 79 42 1 41 119 7 83 6.37e-15 70.9
Msa1008730 AT5G11412.1 37.662 77 47 1 40 116 52 127 9.44e-15 68.2
Msa1008730 AT1G54080.1 35.802 81 52 0 38 118 146 226 9.82e-15 70.5
Msa1008730 AT3G20930.1 35.789 95 55 1 37 125 279 373 1.66e-14 69.7
Msa1008730 AT2G37510.2 33.654 104 44 1 36 114 30 133 1.82e-14 67.0
Msa1008730 AT5G53720.1 39.744 78 46 1 39 116 8 84 2.55e-14 65.1
Msa1008730 AT1G17370.2 37.662 77 48 0 42 118 141 217 1.17e-13 67.4
Msa1008730 AT1G73530.1 33.735 83 55 0 38 120 75 157 1.22e-13 65.1
Msa1008730 AT1G17370.1 37.662 77 48 0 42 118 141 217 1.30e-13 67.4
Msa1008730 AT1G13690.1 35.354 99 60 2 42 139 15 110 1.48e-13 65.1
Msa1008730 AT3G15010.1 33.929 112 59 3 10 116 49 150 2.03e-13 66.6
Msa1008730 AT3G15010.2 33.929 112 59 3 10 116 49 150 2.03e-13 66.6
Msa1008730 AT1G47490.2 34.653 101 65 1 42 141 199 299 2.60e-13 65.9
Msa1008730 AT5G53680.1 35.065 77 49 1 40 116 13 88 2.72e-13 63.9
Msa1008730 AT4G36960.1 39.241 79 46 1 41 119 4 80 2.83e-13 66.2
Msa1008730 AT4G36960.2 39.241 79 46 1 41 119 4 80 2.83e-13 66.2
Msa1008730 AT1G47500.2 33.663 101 66 1 42 141 201 301 2.89e-13 65.9
Msa1008730 AT1G71800.1 33.333 93 57 1 42 129 11 103 3.86e-13 65.9
Msa1008730 AT1G47490.1 36.170 94 59 1 42 134 199 292 4.01e-13 65.9
Msa1008730 AT1G47500.1 33.663 101 66 1 42 141 201 301 4.05e-13 65.9
Msa1008730 AT2G43370.2 32.941 85 57 0 40 124 64 148 4.86e-13 63.9
Msa1008730 AT5G51300.1 39.024 82 50 0 35 116 475 556 7.32e-13 65.1
Msa1008730 AT5G51300.2 39.024 82 50 0 35 116 475 556 7.32e-13 65.1
Msa1008730 AT5G51300.3 39.024 82 50 0 35 116 475 556 7.32e-13 65.1
Msa1008730 AT1G54080.2 34.118 85 52 1 38 118 146 230 8.50e-13 65.1
Msa1008730 AT1G17640.2 43.038 79 43 1 41 119 67 143 9.01e-13 64.7
Msa1008730 AT1G17640.2 32.743 113 67 3 34 138 150 261 3.12e-11 60.5
Msa1008730 AT1G17640.1 43.038 79 43 1 41 119 67 143 9.01e-13 64.7
Msa1008730 AT1G17640.1 32.743 113 67 3 34 138 150 261 3.12e-11 60.5
Msa1008730 AT1G17640.3 43.038 79 43 1 41 119 67 143 9.01e-13 64.7
Msa1008730 AT1G17640.3 32.743 113 67 3 34 138 150 261 3.12e-11 60.5
Msa1008730 AT4G16280.2 39.773 88 49 3 38 121 118 205 1.22e-12 64.7
Msa1008730 AT4G16280.3 39.773 88 49 3 38 121 118 205 1.32e-12 64.3
Msa1008730 AT5G40490.1 30.000 120 78 3 7 123 96 212 1.37e-12 64.3
Msa1008730 AT5G40490.1 36.585 82 50 1 38 119 40 119 1.65e-11 61.2
Msa1008730 AT2G18510.1 39.506 81 48 1 40 119 112 192 1.58e-12 63.9
Msa1008730 AT2G19380.1 34.021 97 61 2 30 126 398 491 2.26e-12 63.9
Msa1008730 AT1G49760.1 36.842 76 48 0 42 117 47 122 2.27e-12 63.9
Msa1008730 AT1G49760.2 36.842 76 48 0 42 117 47 122 2.27e-12 63.9
Msa1008730 AT3G20930.2 34.000 100 55 2 37 125 279 378 2.36e-12 63.5
Msa1008730 AT5G19960.1 36.458 96 60 1 42 137 9 103 2.64e-12 63.2
Msa1008730 AT5G40490.2 36.471 85 53 1 39 123 112 195 2.65e-12 63.5
Msa1008730 AT1G58470.2 39.241 79 46 1 41 119 7 83 2.65e-12 63.5
Msa1008730 AT1G58470.1 39.241 79 46 1 41 119 7 83 2.65e-12 63.5
Msa1008730 AT1G48920.1 36.697 109 59 3 39 143 296 398 2.88e-12 63.5
Msa1008730 AT3G13224.2 37.349 83 50 1 31 113 10 90 3.06e-12 63.2
Msa1008730 AT3G13224.2 27.083 96 65 1 35 125 104 199 1.25e-11 61.6
Msa1008730 AT3G54770.3 35.065 77 49 1 41 117 18 93 3.52e-12 62.4
Msa1008730 AT3G54770.1 35.065 77 49 1 41 117 18 93 3.74e-12 62.4
Msa1008730 AT5G08695.1 32.143 84 57 0 37 120 224 307 4.56e-12 62.8
Msa1008730 AT3G13224.3 34.146 82 52 1 33 114 3 82 5.86e-12 62.4
Msa1008730 AT3G13224.3 27.083 96 65 1 35 125 95 190 1.04e-11 61.6
Msa1008730 AT4G00830.3 29.268 82 58 0 40 121 116 197 6.24e-12 62.4
Msa1008730 AT4G00830.5 29.268 82 58 0 40 121 116 197 6.24e-12 62.4
Msa1008730 AT4G00830.2 29.268 82 58 0 40 121 116 197 6.26e-12 62.4
Msa1008730 AT4G00830.1 29.268 82 58 0 40 121 116 197 6.26e-12 62.4
Msa1008730 AT4G00830.6 29.268 82 58 0 40 121 116 197 6.26e-12 62.4
Msa1008730 AT3G13224.1 37.234 94 52 3 38 131 17 103 9.41e-12 60.8
Msa1008730 AT3G13224.1 34.375 64 42 0 35 98 104 167 8.50e-11 58.2
Msa1008730 AT2G43370.1 33.735 83 55 0 42 124 66 148 1.30e-11 61.2
Msa1008730 AT2G22100.1 35.556 90 53 2 33 122 156 240 1.47e-11 61.2
Msa1008730 AT3G19130.1 33.613 119 76 2 32 149 194 310 1.56e-11 61.2
Msa1008730 AT3G06970.1 33.673 98 55 3 40 130 12 106 1.57e-11 60.8
Msa1008730 AT5G19030.1 35.714 84 50 1 43 122 80 163 2.00e-11 59.3
Msa1008730 AT4G20030.1 30.769 78 54 0 39 116 39 116 2.12e-11 58.5
Msa1008730 AT1G01080.1 30.693 101 67 2 20 120 194 291 2.39e-11 60.5
Msa1008730 AT1G01080.2 30.693 101 67 2 20 120 195 292 2.43e-11 60.5
Msa1008730 AT3G47120.2 31.897 116 69 4 7 116 1 112 4.04e-11 59.7
Msa1008730 AT3G47120.1 31.897 116 69 4 7 116 1 112 5.32e-11 59.7
Msa1008730 AT1G01080.3 34.177 79 50 1 20 98 194 270 6.71e-11 58.9
Msa1008730 AT3G52150.2 35.443 79 51 0 38 116 175 253 7.89e-11 58.5
Msa1008730 AT3G52150.1 35.443 79 51 0 38 116 175 253 7.89e-11 58.5

Find 53 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGCGTTCTTTGGTAAAA+TGG 0.181499 7_1:-9312002 Msa1008730:CDS
TATCATGTATGCTTCGTAAT+TGG 0.220968 7_1:-9309729 Msa1008730:three_prime_UTR
ACAGGCAGGTCCCGAGGTTT+TGG 0.260417 7_1:-9310824 Msa1008730:CDS
ATATTATGCAGAAACAAAAT+TGG 0.277180 7_1:-9309648 Msa1008730:three_prime_UTR
CCTGGTTATCCATGGCTTGC+AGG 0.291915 7_1:+9310762 None:intergenic
TGTGCTTGACAGCAGAATTC+TGG 0.293345 7_1:+9311969 None:intergenic
GTTTGAGCAATGGCGTTCTT+TGG 0.330058 7_1:-9312010 Msa1008730:exon
CGTACCTTGAAAAGCGCTTA+TGG 0.334474 7_1:+9313272 None:intergenic
CGCTATGGAGAAGTTCTTGA+TGG 0.365325 7_1:-9311744 Msa1008730:intron
GGCTATAGTGGTGGCGGCGG+TGG 0.377014 7_1:-9309788 Msa1008730:CDS
TATAGTGGTGGCGGCGGTGG+TGG 0.391279 7_1:-9309785 Msa1008730:CDS
CCTGGGTTTGGTGGCGGCGG+TGG 0.399274 7_1:-9309827 Msa1008730:CDS
GGCGGCGGTGGTGGCTATGG+TGG 0.400748 7_1:-9309776 Msa1008730:CDS
GGTGGCGGCGGTGGTGGCTA+TGG 0.413997 7_1:-9309779 Msa1008730:CDS
GGCGGTGGTGGCTATGGTGG+AGG 0.431253 7_1:-9309773 Msa1008730:CDS
GAAAGGGCACGTCCTGGGTT+TGG 0.439431 7_1:-9309839 Msa1008730:CDS
ATGGCGTTCTTTGGTAAAAT+GGG 0.448549 7_1:-9312001 Msa1008730:CDS
AGGGCACGTCCTGGGTTTGG+TGG 0.461856 7_1:-9309836 Msa1008730:CDS
TATGCTTCTACTCAAACAAT+GGG 0.464104 7_1:+9309695 None:intergenic
TTATGCTTCTACTCAAACAA+TGG 0.464987 7_1:+9309694 None:intergenic
AGTGGCGGCGGTGGCTATAG+TGG 0.471632 7_1:-9309800 Msa1008730:CDS
GGTGGCGGCGGTGGCTATAG+TGG 0.473008 7_1:-9309818 Msa1008730:CDS
GCACGTCCTGGGTTTGGTGG+CGG 0.474062 7_1:-9309833 Msa1008730:CDS
CGTCCTGGGTTTGGTGGCGG+CGG 0.502354 7_1:-9309830 Msa1008730:CDS
TCATATAGCACTGATGATAG+TGG 0.504538 7_1:-9311786 Msa1008730:CDS
ATCCATGGCTTGCAGGGCAG+AGG 0.505179 7_1:+9310769 None:intergenic
GGTGGCTATAGTGGCGGCGG+TGG 0.513526 7_1:-9309809 Msa1008730:CDS
GGTGGAGGCGGCTACTGACC+TGG 0.519353 7_1:-9309758 Msa1008730:exon
CTGGTTATCCATGGCTTGCA+GGG 0.522966 7_1:+9310763 None:intergenic
TGGTTGTCACAGGAACTTGA+TGG 0.529830 7_1:-9309890 Msa1008730:intron
GCTACAGAAAGGGCACGTCC+TGG 0.532248 7_1:-9309845 Msa1008730:CDS
CCTGCAAGCCATGGATAACC+AGG 0.536544 7_1:-9310762 Msa1008730:intron
GGTGGTGGCTATGGTGGAGG+CGG 0.542334 7_1:-9309770 Msa1008730:CDS
AGTGAACTATGCTACAGAAA+GGG 0.549793 7_1:-9309855 Msa1008730:CDS
CTACAGAAAGGGCACGTCCT+GGG 0.553148 7_1:-9309844 Msa1008730:CDS
GGCGGTGGCTATAGTGGCGG+CGG 0.558101 7_1:-9309812 Msa1008730:CDS
TCACAGATCGTGACACAGGC+AGG 0.559483 7_1:-9310838 Msa1008730:CDS
ATCCTCTGCCCTGCAAGCCA+TGG 0.561128 7_1:-9310771 Msa1008730:CDS
AGTTATGAAGCCAAAACCTC+GGG 0.561538 7_1:+9310814 None:intergenic
GGCGGTGGCTATAGTGGTGG+CGG 0.561572 7_1:-9309794 Msa1008730:CDS
CCACCGCCGCCACCAAACCC+AGG 0.568066 7_1:+9309827 None:intergenic
GAGTGAACTATGCTACAGAA+AGG 0.582117 7_1:-9309856 Msa1008730:CDS
TGATAATACCTGGTTATCCA+TGG 0.583626 7_1:+9310754 None:intergenic
GGTGGCTATAGTGGTGGCGG+CGG 0.584544 7_1:-9309791 Msa1008730:CDS
CATAACTTTCGCAACTAGCG+AGG 0.595409 7_1:-9310798 Msa1008730:CDS
CGTGACACAGGCAGGTCCCG+AGG 0.603092 7_1:-9310830 Msa1008730:CDS
AAGTTATGAAGCCAAAACCT+CGG 0.608782 7_1:+9310813 None:intergenic
TGCTTGAAATAACGAAGGAG+TGG 0.615300 7_1:+9311925 None:intergenic
ATTATCACAGATCGTGACAC+AGG 0.628770 7_1:-9310842 Msa1008730:CDS
GGCGGCGGTGGCTATAGTGG+CGG 0.629423 7_1:-9309815 Msa1008730:CDS
GGCGGCGGTGGCTATAGTGG+TGG 0.643444 7_1:-9309797 Msa1008730:CDS
TGTCACAGGAACTTGATGGT+CGG 0.655084 7_1:-9309886 Msa1008730:intron
CTGATTGCTTGAAATAACGA+AGG 0.656640 7_1:+9311920 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTTTTTAATTCTTTTTA+TGG - chr7_1:9310670-9310689 Msa1008730:intron 10.0%
!!! ATCATGTTAAATTTTAAAAA+TGG - chr7_1:9311019-9311038 Msa1008730:intron 10.0%
!!! TATTTGTACAATTTTTTATA+TGG - chr7_1:9312840-9312859 Msa1008730:intron 10.0%
!! TTTATTGTACAAAATTCAAT+TGG - chr7_1:9309784-9309803 Msa1008730:CDS 15.0%
!! TTATTGTACAAAATTCAATT+GGG - chr7_1:9309785-9309804 Msa1008730:CDS 15.0%
!!! AATAATTTTGTACTTTGAAA+TGG - chr7_1:9310534-9310553 Msa1008730:intron 15.0%
!!! ATAATTTTGTACTTTGAAAT+GGG - chr7_1:9310535-9310554 Msa1008730:intron 15.0%
!!! TGCTATTTTAATTCTTTTTA+TGG - chr7_1:9310737-9310756 Msa1008730:intron 15.0%
!! CCTATTTATAAGAAAAATTT+CGG - chr7_1:9311310-9311329 Msa1008730:intron 15.0%
!!! AATTAGAAATTCAAACTTTT+TGG + chr7_1:9311577-9311596 None:intergenic 15.0%
!! TCTATCAAATCATATATAAA+AGG + chr7_1:9311860-9311879 None:intergenic 15.0%
!! AAGTAATAGTCATATAAAAA+AGG - chr7_1:9311916-9311935 Msa1008730:CDS 15.0%
!! AAAAATAATAAATGCATATG+TGG - chr7_1:9312431-9312450 Msa1008730:intron 15.0%
!! TGAAATCAGAATTGAAAAAT+GGG + chr7_1:9309659-9309678 None:intergenic 20.0%
!!! TTCTTATTTACCTGTTAATT+GGG - chr7_1:9309696-9309715 Msa1008730:three_prime_UTR 20.0%
!! TCAAATCAAAGAAAAATTTC+AGG + chr7_1:9309845-9309864 None:intergenic 20.0%
!! ATAACTTTGTGGTTTATTTA+CGG - chr7_1:9309932-9309951 Msa1008730:intron 20.0%
!! TTAATTGTACACGAAAAAAA+AGG + chr7_1:9310306-9310325 None:intergenic 20.0%
!!! TTTAATTCTTTTTATGGAAC+CGG - chr7_1:9310676-9310695 Msa1008730:intron 20.0%
!!! TAAAATAGCAATTTTATCTG+AGG + chr7_1:9310727-9310746 None:intergenic 20.0%
!!! TTTAATTCTTTTTATGGAAC+CGG - chr7_1:9310676-9310695 Msa1008730:intron 20.0%
!! TCATAAGTTACAATTAACAA+TGG - chr7_1:9310791-9310810 Msa1008730:CDS 20.0%
!!! ATTTTTCTTATAAATAGGAC+CGG + chr7_1:9311308-9311327 None:intergenic 20.0%
!!! CCGAAATTTTTCTTATAAAT+AGG + chr7_1:9311313-9311332 None:intergenic 20.0%
!! TCAACAAAATTTAATGTATG+TGG + chr7_1:9311372-9311391 None:intergenic 20.0%
!!! TGTAATTTTAAAGAAAAGTC+TGG - chr7_1:9311649-9311668 Msa1008730:intron 20.0%
!! TAATAGTCATATAAAAAAGG+CGG - chr7_1:9311919-9311938 Msa1008730:CDS 20.0%
!! ATATGTATTTCATGATATTG+TGG - chr7_1:9311956-9311975 Msa1008730:CDS 20.0%
!! TAAATGTACTTTCATAAATG+AGG + chr7_1:9312213-9312232 None:intergenic 20.0%
!!! TCATTTATGAAAGTACATTT+AGG - chr7_1:9312212-9312231 Msa1008730:intron 20.0%
!!! CATTTATGAAAGTACATTTA+GGG - chr7_1:9312213-9312232 Msa1008730:intron 20.0%
!!! TTTTGGCTAAATAAATGTAA+GGG + chr7_1:9312405-9312424 None:intergenic 20.0%
!!! ATTTTGGCTAAATAAATGTA+AGG + chr7_1:9312406-9312425 None:intergenic 20.0%
!!! TAAGTTTTGAATACTCAATT+TGG + chr7_1:9312484-9312503 None:intergenic 20.0%
!! AATGCTTAACAATGATAATT+TGG + chr7_1:9312595-9312614 None:intergenic 20.0%
!! AAATTATCATTGTTAAGCAT+TGG - chr7_1:9312594-9312613 Msa1008730:intron 20.0%
!!! TCTATTTTTCATCATGATAA+TGG + chr7_1:9312628-9312647 None:intergenic 20.0%
!! TCAATTTGCATTTATGATAA+TGG + chr7_1:9312699-9312718 None:intergenic 20.0%
!! AAATTGAAATATAACGACTT+GGG - chr7_1:9312712-9312731 Msa1008730:intron 20.0%
!! AAAATTGTACAAATAGAAGT+TGG + chr7_1:9312835-9312854 None:intergenic 20.0%
!!! GAAGCATAATTTTCTATTTT+AGG - chr7_1:9313192-9313211 Msa1008730:intron 20.0%
!! ATATTATGCAGAAACAAAAT+TGG - chr7_1:9313224-9313243 Msa1008730:intron 20.0%
!!! ACAAAATTGGAATTACTTTT+TGG - chr7_1:9313237-9313256 Msa1008730:intron 20.0%
!!! TTTTGGTTTCATCTTTAAAT+TGG - chr7_1:9313254-9313273 Msa1008730:intron 20.0%
! GTGAAATCAGAATTGAAAAA+TGG + chr7_1:9309660-9309679 None:intergenic 25.0%
!! GTTCTTATTTACCTGTTAAT+TGG - chr7_1:9309695-9309714 Msa1008730:three_prime_UTR 25.0%
!!! TTTTTCTGTATTTTTGACCT+AGG - chr7_1:9309732-9309751 Msa1008730:three_prime_UTR 25.0%
!! ACTTTTTGCTTATAACTTTG+TGG - chr7_1:9309921-9309940 Msa1008730:intron 25.0%
! AATCATGTATTAGAAATGAG+TGG - chr7_1:9309961-9309980 Msa1008730:intron 25.0%
!! CAAAATATATTTTGTAGGGA+AGG + chr7_1:9310624-9310643 None:intergenic 25.0%
!! CTTCCCTACAAAATATATTT+TGG - chr7_1:9310622-9310641 Msa1008730:intron 25.0%
!! CCACCAAAATATATTTTGTA+GGG + chr7_1:9310628-9310647 None:intergenic 25.0%
!! ACCACCAAAATATATTTTGT+AGG + chr7_1:9310629-9310648 None:intergenic 25.0%
!! TAAGTGATACTAATTTTCTG+AGG - chr7_1:9310824-9310843 Msa1008730:CDS 25.0%
!! TACCAATTTTTCATCATATC+AGG - chr7_1:9311175-9311194 Msa1008730:intron 25.0%
! AACCTGATATGATGAAAAAT+TGG + chr7_1:9311180-9311199 None:intergenic 25.0%
! GTATATAATAAGCATCATAC+TGG + chr7_1:9311280-9311299 None:intergenic 25.0%
!!! ACATTAAATTTTGTTGACTG+AGG - chr7_1:9311375-9311394 Msa1008730:intron 25.0%
! TGTCAATTTGAAGGAAAATT+CGG - chr7_1:9311719-9311738 Msa1008730:intron 25.0%
! TAAAATCGCTCAAAATAAAG+TGG - chr7_1:9311782-9311801 Msa1008730:CDS 25.0%
! AAAATCGCTCAAAATAAAGT+GGG - chr7_1:9311783-9311802 Msa1008730:CDS 25.0%
! TTAAAATAGTAACTTCGCAT+TGG + chr7_1:9312356-9312375 None:intergenic 25.0%
! TTTGGTAAAGAGAATATCTT+AGG + chr7_1:9312466-9312485 None:intergenic 25.0%
! GTATGCAAATTATTATAGGA+TGG + chr7_1:9312512-9312531 None:intergenic 25.0%
! GCAAGTATGCAAATTATTAT+AGG + chr7_1:9312516-9312535 None:intergenic 25.0%
! AATGCTTAACAAGGATAATT+TGG + chr7_1:9312666-9312685 None:intergenic 25.0%
! AAATTATCCTTGTTAAGCAT+TGG - chr7_1:9312665-9312684 Msa1008730:intron 25.0%
! CAAATTGAAATATAACGACT+TGG - chr7_1:9312711-9312730 Msa1008730:intron 25.0%
! ATGCATATAGTATTAGTTAG+AGG - chr7_1:9312739-9312758 Msa1008730:intron 25.0%
! TGCATATAGTATTAGTTAGA+GGG - chr7_1:9312740-9312759 Msa1008730:intron 25.0%
!! TGATAATGTGACAATTATTG+TGG - chr7_1:9312776-9312795 Msa1008730:intron 25.0%
! TTGTAGCATCTAAATTATGT+TGG - chr7_1:9312962-9312981 Msa1008730:intron 25.0%
ATAACAGAAACCCAATTAAC+AGG + chr7_1:9309709-9309728 None:intergenic 30.0%
CACAATATTAAGCATTACCT+AGG + chr7_1:9309752-9309771 None:intergenic 30.0%
CTTGAGTGATGTTAATGTTA+TGG - chr7_1:9309867-9309886 Msa1008730:CDS 30.0%
CTAAAAAACCTGTTATTACG+AGG - chr7_1:9310396-9310415 Msa1008730:intron 30.0%
TTTATCTTCCTCGTAATAAC+AGG + chr7_1:9310407-9310426 None:intergenic 30.0%
AGATAAATGATGAAAGCTAG+AGG - chr7_1:9310420-9310439 Msa1008730:intron 30.0%
GATAAATGATGAAAGCTAGA+GGG - chr7_1:9310421-9310440 Msa1008730:intron 30.0%
AATACATCAAACAGAGTACA+GGG + chr7_1:9310485-9310504 None:intergenic 30.0%
TAATACATCAAACAGAGTAC+AGG + chr7_1:9310486-9310505 None:intergenic 30.0%
TTGTATAATAGCAAAGAAGC+AGG - chr7_1:9310563-9310582 Msa1008730:intron 30.0%
TGTATAATAGCAAAGAAGCA+GGG - chr7_1:9310564-9310583 Msa1008730:intron 30.0%
!! CCCTACAAAATATATTTTGG+TGG - chr7_1:9310625-9310644 Msa1008730:intron 30.0%
!! TCTGAGGTTTTATGTTTTCA+AGG - chr7_1:9310840-9310859 Msa1008730:CDS 30.0%
TCAAATTTCAATCGTAATGC+AGG - chr7_1:9311059-9311078 Msa1008730:intron 30.0%
ATTCAGAGACAATTTACAAG+TGG + chr7_1:9311228-9311247 None:intergenic 30.0%
TGCTTATTATATACTACCTC+CGG - chr7_1:9311286-9311305 Msa1008730:intron 30.0%
TAATGCATCATTTATTGCTG+TGG + chr7_1:9311695-9311714 None:intergenic 30.0%
CATTATCAGTGTCAATTTGA+AGG - chr7_1:9311710-9311729 Msa1008730:intron 30.0%
AATTTGAAGGAAAATTCGGA+CGG - chr7_1:9311723-9311742 Msa1008730:intron 30.0%
! ATGTTTTTCCCTTTCTGATT+TGG + chr7_1:9311755-9311774 None:intergenic 30.0%
ATCAGAAAGGGAAAAACATA+AGG - chr7_1:9311756-9311775 Msa1008730:CDS 30.0%
TCAGAAAGGGAAAAACATAA+GGG - chr7_1:9311757-9311776 Msa1008730:CDS 30.0%
AAATCGCTCAAAATAAAGTG+GGG - chr7_1:9311784-9311803 Msa1008730:CDS 30.0%
GGAAGAACATTAAAAATGAG+AGG + chr7_1:9312003-9312022 None:intergenic 30.0%
! ATGAAAGTACATTTAGGGTT+TGG - chr7_1:9312218-9312237 Msa1008730:intron 30.0%
TTGCTTGTTTCACAAATTGA+AGG - chr7_1:9312532-9312551 Msa1008730:intron 30.0%
AAACAGCAACAATTAGTTGA+TGG + chr7_1:9312885-9312904 None:intergenic 30.0%
! TAAATTATGTTGGTTGTCAC+AGG - chr7_1:9312972-9312991 Msa1008730:intron 30.0%
! GCATACATGATAAATTTTCC+AGG + chr7_1:9313135-9313154 None:intergenic 30.0%
TATCATGTATGCTTCGTAAT+TGG - chr7_1:9313143-9313162 Msa1008730:intron 30.0%
TATGCTTCTACTCAAACAAT+GGG + chr7_1:9313180-9313199 None:intergenic 30.0%
TTATGCTTCTACTCAAACAA+TGG + chr7_1:9313181-9313200 None:intergenic 30.0%
AATGAGTGGATAGAGTTTGA+TGG - chr7_1:9309975-9309994 Msa1008730:intron 35.0%
!! TGGTTTGTTAAAACTCTGCT+AGG - chr7_1:9310188-9310207 Msa1008730:intron 35.0%
ATAGCATCACTATAGTGTAG+TGG + chr7_1:9310258-9310277 None:intergenic 35.0%
! TAACTCTTGTTGTCAAATGG+CGG + chr7_1:9310283-9310302 None:intergenic 35.0%
! AGGTAACTCTTGTTGTCAAA+TGG + chr7_1:9310286-9310305 None:intergenic 35.0%
TGTAGGGAAGGCTTATAAAA+GGG + chr7_1:9310612-9310631 None:intergenic 35.0%
TTGTAGGGAAGGCTTATAAA+AGG + chr7_1:9310613-9310632 None:intergenic 35.0%
! AATTCTTTTTATGGAACCGG+TGG - chr7_1:9310679-9310698 Msa1008730:intron 35.0%
! AATTCTTTTTATGGAACCGG+TGG - chr7_1:9310679-9310698 Msa1008730:intron 35.0%
!! TGTTTTCAAGGTTTGAGCAA+TGG - chr7_1:9310852-9310871 Msa1008730:intron 35.0%
AATGGCGTTCTTTGGTAAAA+TGG - chr7_1:9310870-9310889 Msa1008730:intron 35.0%
ATGGCGTTCTTTGGTAAAAT+GGG - chr7_1:9310871-9310890 Msa1008730:intron 35.0%
CTGATTGCTTGAAATAACGA+AGG + chr7_1:9310955-9310974 None:intergenic 35.0%
! TCATCTGCCAAGCTTTTTAT+TGG - chr7_1:9310982-9311001 Msa1008730:intron 35.0%
CATACCTCCAATAAAAAGCT+TGG + chr7_1:9310992-9311011 None:intergenic 35.0%
!! TCATATAGCACTGATGATAG+TGG - chr7_1:9311086-9311105 Msa1008730:intron 35.0%
TTTCTTATAAATAGGACCGG+AGG + chr7_1:9311305-9311324 None:intergenic 35.0%
!! AAATTTTGTTGACTGAGGAC+CGG - chr7_1:9311380-9311399 Msa1008730:intron 35.0%
CCACACTAACTATGAAAGTT+GGG + chr7_1:9311525-9311544 None:intergenic 35.0%
AATCGCTCAAAATAAAGTGG+GGG - chr7_1:9311785-9311804 Msa1008730:CDS 35.0%
AAAAGGCTTAGTTGCACTTT+GGG + chr7_1:9311843-9311862 None:intergenic 35.0%
TAAAAGGCTTAGTTGCACTT+TGG + chr7_1:9311844-9311863 None:intergenic 35.0%
!! ATAGAGTGCTTACGTTGTTT+TGG - chr7_1:9311875-9311894 Msa1008730:intron 35.0%
TAGTCATATAAAAAAGGCGG+CGG - chr7_1:9311922-9311941 Msa1008730:CDS 35.0%
AAGTTATGAAGCCAAAACCT+CGG + chr7_1:9312062-9312081 None:intergenic 35.0%
TGATAATACCTGGTTATCCA+TGG + chr7_1:9312121-9312140 None:intergenic 35.0%
TCACGAAAACTGATAATACC+TGG + chr7_1:9312131-9312150 None:intergenic 35.0%
CTAAAAGTCACCAATTCACA+TGG - chr7_1:9312171-9312190 Msa1008730:intron 35.0%
GAATACACCAATGCTTAACA+AGG + chr7_1:9312604-9312623 None:intergenic 35.0%
ATGTGACAATTATTGTGGCT+CGG - chr7_1:9312781-9312800 Msa1008730:intron 35.0%
AGTGAACTATGCTACAGAAA+GGG - chr7_1:9313017-9313036 Msa1008730:intron 35.0%
TGGGATTTAGTGACAGGATT+GGG + chr7_1:9310139-9310158 None:intergenic 40.0%
TTGGGATTTAGTGACAGGAT+TGG + chr7_1:9310140-9310159 None:intergenic 40.0%
ACTAAATCCCAACCTGTCAA+TGG - chr7_1:9310148-9310167 Msa1008730:intron 40.0%
AAGTACAAACATTCCACCAC+CGG + chr7_1:9310698-9310717 None:intergenic 40.0%
TGCTTGAAATAACGAAGGAG+TGG + chr7_1:9310950-9310969 None:intergenic 40.0%
AAAAAGCTTGGCAGATGACA+TGG + chr7_1:9310980-9310999 None:intergenic 40.0%
! TCTGCCAAGCTTTTTATTGG+AGG - chr7_1:9310985-9311004 Msa1008730:intron 40.0%
CATAGCGAGAAAAAGCTTCT+CGG + chr7_1:9311115-9311134 None:intergenic 40.0%
TCGCACAATCATGATACTCT+GGG + chr7_1:9311435-9311454 None:intergenic 40.0%
ATCGCACAATCATGATACTC+TGG + chr7_1:9311436-9311455 None:intergenic 40.0%
GTATCATGATTGTGCGATTC+TGG - chr7_1:9311438-9311457 Msa1008730:intron 40.0%
GGGGAATATCAAATCGTGAA+GGG + chr7_1:9311464-9311483 None:intergenic 40.0%
TGTCCCCTTAGTGCAAATTT+GGG + chr7_1:9311489-9311508 None:intergenic 40.0%
ATGTCCCCTTAGTGCAAATT+TGG + chr7_1:9311490-9311509 None:intergenic 40.0%
CCCAACTTTCATAGTTAGTG+TGG - chr7_1:9311522-9311541 Msa1008730:intron 40.0%
GCCACACTAACTATGAAAGT+TGG + chr7_1:9311526-9311545 None:intergenic 40.0%
CCAAAAATCAACCCATACAG+GGG + chr7_1:9311618-9311637 None:intergenic 40.0%
GCCAAAAATCAACCCATACA+GGG + chr7_1:9311619-9311638 None:intergenic 40.0%
GGAGACTACCAAATCAGAAA+GGG - chr7_1:9311744-9311763 Msa1008730:intron 40.0%
ATCGCTCAAAATAAAGTGGG+GGG - chr7_1:9311786-9311805 Msa1008730:CDS 40.0%
! GTATCACAGTTGAGCGATTT+TGG + chr7_1:9311812-9311831 None:intergenic 40.0%
AATCGCTCAACTGTGATACT+TGG - chr7_1:9311813-9311832 Msa1008730:intron 40.0%
CGATCTGTGATAATCTTTGC+TGG + chr7_1:9312024-9312043 None:intergenic 40.0%
ATTATCACAGATCGTGACAC+AGG - chr7_1:9312030-9312049 Msa1008730:intron 40.0%
AGTTATGAAGCCAAAACCTC+GGG + chr7_1:9312061-9312080 None:intergenic 40.0%
GTCATGCTTACCATGTGAAT+TGG + chr7_1:9312184-9312203 None:intergenic 40.0%
GAGTGAACTATGCTACAGAA+AGG - chr7_1:9313016-9313035 Msa1008730:intron 40.0%
!! CGTACCTTGAAAAGCGCTTA+TGG + chr7_1:9309603-9309622 None:intergenic 45.0%
TATTTCCTCAGCGTTGTCGA+TGG - chr7_1:9310002-9310021 Msa1008730:intron 45.0%
GTGACAGGATTGGGATTTCA+CGG + chr7_1:9310130-9310149 None:intergenic 45.0%
! ACAGGTTGGGATTTAGTGAC+AGG + chr7_1:9310145-9310164 None:intergenic 45.0%
TAGTCTGCCATTGACAGGTT+GGG + chr7_1:9310158-9310177 None:intergenic 45.0%
AACCTGTCAATGGCAGACTA+CGG - chr7_1:9310158-9310177 Msa1008730:intron 45.0%
TGGCAGACTACGGAAGATAA+TGG - chr7_1:9310168-9310187 Msa1008730:intron 45.0%
! TCTTTTTATGGAACCGGTGG+TGG - chr7_1:9310682-9310701 Msa1008730:intron 45.0%
! TCTTTTTATGGAACCGGTGG+TGG - chr7_1:9310682-9310701 Msa1008730:intron 45.0%
AAGCACAAACATTCCACCAC+CGG + chr7_1:9310765-9310784 None:intergenic 45.0%
GTTTGAGCAATGGCGTTCTT+TGG - chr7_1:9310862-9310881 Msa1008730:intron 45.0%
TGTGCTTGACAGCAGAATTC+TGG + chr7_1:9310906-9310925 None:intergenic 45.0%
!! CGAGAAGCTTTTTCTCGCTA+TGG - chr7_1:9311113-9311132 Msa1008730:intron 45.0%
CGCTATGGAGAAGTTCTTGA+TGG - chr7_1:9311128-9311147 Msa1008730:intron 45.0%
CTAATAAAGCCTACTCCCTC+CGG + chr7_1:9311402-9311421 None:intergenic 45.0%
GCACAATCATGATACTCTGG+GGG + chr7_1:9311433-9311452 None:intergenic 45.0%
CGCACAATCATGATACTCTG+GGG + chr7_1:9311434-9311453 None:intergenic 45.0%
CGGGGAATATCAAATCGTGA+AGG + chr7_1:9311465-9311484 None:intergenic 45.0%
! CTTAGTGCAAATTTGGGACG+GGG + chr7_1:9311483-9311502 None:intergenic 45.0%
! CCTTAGTGCAAATTTGGGAC+GGG + chr7_1:9311484-9311503 None:intergenic 45.0%
CCCTTAGTGCAAATTTGGGA+CGG + chr7_1:9311485-9311504 None:intergenic 45.0%
CCGTCCCAAATTTGCACTAA+GGG - chr7_1:9311482-9311501 Msa1008730:intron 45.0%
CGTCCCAAATTTGCACTAAG+GGG - chr7_1:9311483-9311502 Msa1008730:intron 45.0%
TTCATTTGCTCTCCCCTGTA+TGG - chr7_1:9311603-9311622 Msa1008730:intron 45.0%
TCATTTGCTCTCCCCTGTAT+GGG - chr7_1:9311604-9311623 Msa1008730:intron 45.0%
!!! CCCCTGTATGGGTTGATTTT+TGG - chr7_1:9311615-9311634 Msa1008730:intron 45.0%
CGCCAAAAATCAACCCATAC+AGG + chr7_1:9311620-9311639 None:intergenic 45.0%
CGGAGACTACCAAATCAGAA+AGG - chr7_1:9311743-9311762 Msa1008730:intron 45.0%
CATAACTTTCGCAACTAGCG+AGG - chr7_1:9312074-9312093 Msa1008730:intron 45.0%
! TGACAATTATTGTGGCTCGG+AGG - chr7_1:9312784-9312803 Msa1008730:intron 45.0%
! GACAATTATTGTGGCTCGGA+GGG - chr7_1:9312785-9312804 Msa1008730:intron 45.0%
TGGTTGTCACAGGAACTTGA+TGG - chr7_1:9312982-9313001 Msa1008730:intron 45.0%
! TGTCACAGGAACTTGATGGT+CGG - chr7_1:9312986-9313005 Msa1008730:intron 45.0%
!! TTAAAAATTAAAAAAATCTA+AGG + chr7_1:9309902-9309921 None:intergenic 5.0%
!!! TTATTATTTTTATCTTATTT+TGG + chr7_1:9312422-9312441 None:intergenic 5.0%
! GCAGCCATAAGCGCTTTTCA+AGG - chr7_1:9309596-9309615 Msa1008730:three_prime_UTR 50.0%
GTAGTCTGCCATTGACAGGT+TGG + chr7_1:9310159-9310178 None:intergenic 50.0%
TTCCGTAGTCTGCCATTGAC+AGG + chr7_1:9310163-9310182 None:intergenic 50.0%
!! TTTTGTTGACTGAGGACCGG+AGG - chr7_1:9311383-9311402 Msa1008730:intron 50.0%
! TTTGTTGACTGAGGACCGGA+GGG - chr7_1:9311384-9311403 Msa1008730:intron 50.0%
CCCGTCCCAAATTTGCACTA+AGG - chr7_1:9311481-9311500 Msa1008730:intron 50.0%
GTCTGGATGACGATCAGAGT+TGG - chr7_1:9311666-9311685 Msa1008730:intron 50.0%
CGCTCAACTGTGATACTTGG+AGG - chr7_1:9311816-9311835 Msa1008730:intron 50.0%
! CTGGTTATCCATGGCTTGCA+GGG + chr7_1:9312112-9312131 None:intergenic 50.0%
TTCCTCAGCGTTGTCGATGG+CGG - chr7_1:9310005-9310024 Msa1008730:intron 55.0%
TCACAGATCGTGACACAGGC+AGG - chr7_1:9312034-9312053 Msa1008730:intron 55.0%
! CCTGGTTATCCATGGCTTGC+AGG + chr7_1:9312113-9312132 None:intergenic 55.0%
CCTGCAAGCCATGGATAACC+AGG - chr7_1:9312110-9312129 Msa1008730:intron 55.0%
! CTACAGAAAGGGCACGTCCT+GGG - chr7_1:9313028-9313047 Msa1008730:intron 55.0%
! ACAGGCAGGTCCCGAGGTTT+TGG - chr7_1:9312048-9312067 Msa1008730:intron 60.0%
ATCCTCTGCCCTGCAAGCCA+TGG - chr7_1:9312101-9312120 Msa1008730:intron 60.0%
! ATCCATGGCTTGCAGGGCAG+AGG + chr7_1:9312106-9312125 None:intergenic 60.0%
! GCTACAGAAAGGGCACGTCC+TGG - chr7_1:9313027-9313046 Msa1008730:intron 60.0%
! GAAAGGGCACGTCCTGGGTT+TGG - chr7_1:9313033-9313052 Msa1008730:intron 60.0%
CTCCGCCATCGACAACGCTG+AGG + chr7_1:9310010-9310029 None:intergenic 65.0%
! CTCAGCGTTGTCGATGGCGG+AGG - chr7_1:9310008-9310027 Msa1008730:intron 65.0%
GACTGAGGACCGGAGGGAGT+AGG - chr7_1:9311390-9311409 Msa1008730:intron 65.0%
AGGGCACGTCCTGGGTTTGG+TGG - chr7_1:9313036-9313055 Msa1008730:intron 65.0%
!! GCACGTCCTGGGTTTGGTGG+CGG - chr7_1:9313039-9313058 Msa1008730:intron 65.0%
AGTGGCGGCGGTGGCTATAG+TGG - chr7_1:9313072-9313091 Msa1008730:intron 65.0%
GGCGGTGGCTATAGTGGTGG+CGG - chr7_1:9313078-9313097 Msa1008730:intron 65.0%
!! GGTGGCTATAGTGGTGGCGG+CGG - chr7_1:9313081-9313100 Msa1008730:intron 65.0%
!! TATAGTGGTGGCGGCGGTGG+TGG - chr7_1:9313087-9313106 Msa1008730:intron 65.0%
! GGTGGTGGCTATGGTGGAGG+CGG - chr7_1:9313102-9313121 Msa1008730:intron 65.0%
CGTGACACAGGCAGGTCCCG+AGG - chr7_1:9312042-9312061 Msa1008730:intron 70.0%
!! CGTCCTGGGTTTGGTGGCGG+CGG - chr7_1:9313042-9313061 Msa1008730:intron 70.0%
! GGTGGCGGCGGTGGCTATAG+TGG - chr7_1:9313054-9313073 Msa1008730:intron 70.0%
GGCGGCGGTGGCTATAGTGG+CGG - chr7_1:9313057-9313076 Msa1008730:intron 70.0%
GGCGGTGGCTATAGTGGCGG+CGG - chr7_1:9313060-9313079 Msa1008730:intron 70.0%
GGTGGCTATAGTGGCGGCGG+TGG - chr7_1:9313063-9313082 Msa1008730:intron 70.0%
GGCGGCGGTGGCTATAGTGG+TGG - chr7_1:9313057-9313076 Msa1008730:intron 70.0%
!! GGCTATAGTGGTGGCGGCGG+TGG - chr7_1:9313084-9313103 Msa1008730:intron 70.0%
! GGCGGTGGTGGCTATGGTGG+AGG - chr7_1:9313099-9313118 Msa1008730:intron 70.0%
GGTGGAGGCGGCTACTGACC+TGG - chr7_1:9313114-9313133 Msa1008730:intron 70.0%
CCACCGCCGCCACCAAACCC+AGG + chr7_1:9313048-9313067 None:intergenic 75.0%
!! CCTGGGTTTGGTGGCGGCGG+TGG - chr7_1:9313045-9313064 Msa1008730:intron 75.0%
! GGTGGCGGCGGTGGTGGCTA+TGG - chr7_1:9313093-9313112 Msa1008730:intron 75.0%
! GGCGGCGGTGGTGGCTATGG+TGG - chr7_1:9313096-9313115 Msa1008730:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 9309569 9313325 9309569 ID=Msa1008730;Name=Msa1008730
chr7_1 mRNA 9309569 9313325 9309569 ID=Msa1008730-mRNA-1;Parent=Msa1008730;Name=Msa1008730-mRNA-1;_AED=0.38;_eAED=0.38;_QI=58|1|1|1|0.75|0.6|5|194|149
chr7_1 exon 9309569 9309900 9309569 ID=Msa1008730-mRNA-1:exon:2674;Parent=Msa1008730-mRNA-1
chr7_1 exon 9310763 9310869 9310763 ID=Msa1008730-mRNA-1:exon:2673;Parent=Msa1008730-mRNA-1
chr7_1 exon 9311745 9311813 9311745 ID=Msa1008730-mRNA-1:exon:2672;Parent=Msa1008730-mRNA-1
chr7_1 exon 9311888 9312032 9311888 ID=Msa1008730-mRNA-1:exon:2671;Parent=Msa1008730-mRNA-1
chr7_1 exon 9313277 9313325 9313277 ID=Msa1008730-mRNA-1:exon:2670;Parent=Msa1008730-mRNA-1
chr7_1 five_prime_UTR 9313277 9313325 9313277 ID=Msa1008730-mRNA-1:five_prime_utr;Parent=Msa1008730-mRNA-1
chr7_1 five_prime_UTR 9312024 9312032 9312024 ID=Msa1008730-mRNA-1:five_prime_utr;Parent=Msa1008730-mRNA-1
chr7_1 CDS 9311888 9312023 9311888 ID=Msa1008730-mRNA-1:cds;Parent=Msa1008730-mRNA-1
chr7_1 CDS 9311745 9311813 9311745 ID=Msa1008730-mRNA-1:cds;Parent=Msa1008730-mRNA-1
chr7_1 CDS 9310763 9310869 9310763 ID=Msa1008730-mRNA-1:cds;Parent=Msa1008730-mRNA-1
chr7_1 CDS 9309763 9309900 9309763 ID=Msa1008730-mRNA-1:cds;Parent=Msa1008730-mRNA-1
chr7_1 three_prime_UTR 9309569 9309762 9309569 ID=Msa1008730-mRNA-1:three_prime_utr;Parent=Msa1008730-mRNA-1
Gene Sequence

>Msa1008730

ATGGCGTTCTTTGGTAAAATGGGAAAGTTAATCCAGAATTCTGCTGTCAAGCACATCAATCATGATTTATCTATGTCCACTCCTTCGTTATTTCAAGCAATCAGATCCATGTCATCTGCCAAGCTTTTTATTGGAGGTGTTTCATATAGCACTGATGATAGTGGTCTCCGAGAAGCTTTTTCTCGCTATGGAGAAGTTCTTGATGCAAAGATTATCACAGATCGTGACACAGGCAGGTCCCGAGGTTTTGGCTTCATAACTTTCGCAACTAGCGAGGAAGCATCCTCTGCCCTGCAAGCCATGGATAACCAGGAACTTGATGGTCGGACAGTACGAGTGAACTATGCTACAGAAAGGGCACGTCCTGGGTTTGGTGGCGGCGGTGGCTATAGTGGCGGCGGTGGCTATAGTGGTGGCGGCGGTGGTGGCTATGGTGGAGGCGGCTACTGA
Protein sequence

>Msa1008730

MAFFGKMGKLIQNSAVKHINHDLSMSTPSLFQAIRSMSSAKLFIGGVSYSTDDSGLREAFSRYGEVLDAKIITDRDTGRSRGFGFITFATSEEASSALQAMDNQELDGRTVRVNYATERARPGFGGGGGYSGGGGYSGGGGGGYGGGGY*