AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0165950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165950 MtrunA17_Chr1g0180621 100.000 119 0 0 1 119 1 119 2.31e-85 244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165950 AT2G36930.1 77.586 116 26 0 3 118 2 117 1.16e-63 192
Msa0165950 AT2G36930.1 61.364 88 26 1 31 118 118 197 4.92e-23 89.0

Find 43 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTGATTTCTTAGGTTTA+GGG 0.191957 1_4:+46825223 None:intergenic
TGCAGCCACTGTACTGATTT+AGG 0.203717 1_4:+46825287 None:intergenic
TGATCTGATTTCTTAGGTTT+AGG 0.243197 1_4:+46825222 None:intergenic
GCAGCCACTGTACTGATTTA+GGG 0.258130 1_4:+46825288 None:intergenic
ATTAACTTTGGTCCATTATC+TGG 0.259509 1_4:+46822359 None:intergenic
CCTAAGAAATCAGATCAAAA+TGG 0.279852 1_4:-46825216 Msa0165950:exon
AGAGAAGATATAGATTATAT+TGG 0.308792 1_4:+46822218 None:intergenic
CAATAGTGTTGTCCCATTCC+AGG 0.382658 1_4:+46825038 None:intergenic
ATATTGCTTATCTCGTAATA+AGG 0.388431 1_4:+46822259 None:intergenic
CCTCTTGATGAAGATTTGCC+TGG 0.392427 1_4:-46825056 Msa0165950:CDS
GGGATGGGAATGCCAGATAA+TGG 0.398576 1_4:-46822371 Msa0165950:CDS
TGATGAAGATTTGCCTGGAA+TGG 0.414705 1_4:-46825051 Msa0165950:CDS
TGAGAGATTATAGTAGAAAC+TGG 0.420409 1_4:-46822307 Msa0165950:three_prime_UTR
CAACTTGATGCTGATTTAGC+TGG 0.435360 1_4:-46822395 Msa0165950:CDS
CTAAGAAATCAGATCAAAAT+GGG 0.462676 1_4:-46825215 Msa0165950:exon
GGCTGCAGAAGAAGAGTAAG+AGG 0.467117 1_4:-46825271 Msa0165950:five_prime_UTR
GATGAAGATTTGCCTGGAAT+GGG 0.472700 1_4:-46825050 Msa0165950:CDS
AGTTACATAGACATTAACTT+TGG 0.499727 1_4:+46822347 None:intergenic
CTCTTCTTCACCTTCCTGTG+TGG 0.501586 1_4:+46825182 None:intergenic
CTTGATCAAAGGAGATGACA+TGG 0.505141 1_4:-46825123 Msa0165950:CDS
GATCTAAGAGGTAAATTAGG+AGG 0.506513 1_4:+46822189 None:intergenic
CGTTCAAAATTCTTGATCAA+AGG 0.507305 1_4:-46825134 Msa0165950:CDS
AAATCTTCATCAAGAGGTAA+AGG 0.519690 1_4:+46825062 None:intergenic
AAAGGCTTTCTATCTTCTTG+AGG 0.536393 1_4:+46825080 None:intergenic
CTCGTCCCTCACGGCTACAC+TGG 0.536997 1_4:+46824232 None:intergenic
CTTAAAATGCTCGTCCCTCA+CGG 0.540545 1_4:+46824223 None:intergenic
GCTGATTTAGCTGGAGGGAT+GGG 0.562217 1_4:-46822386 Msa0165950:CDS
AGGAAAATGTCCACACAGGA+AGG 0.564358 1_4:-46825192 Msa0165950:CDS
CTTTGCCAGTGTAGCCGTGA+GGG 0.568259 1_4:-46824237 Msa0165950:CDS
CTTGATGCTGATTTAGCTGG+AGG 0.571593 1_4:-46822392 Msa0165950:CDS
TGCTGATTTAGCTGGAGGGA+TGG 0.572336 1_4:-46822387 Msa0165950:CDS
TAGAGATATACTCGCAGTGA+AGG 0.577943 1_4:+46825015 None:intergenic
CCAGGCAAATCTTCATCAAG+AGG 0.587128 1_4:+46825056 None:intergenic
ATCTAAGAGGTAAATTAGGA+GGG 0.589139 1_4:+46822190 None:intergenic
GTGCAGTGTGAAACAAATGA+TGG 0.596101 1_4:-46822435 Msa0165950:intron
TGCAGTGTGAAACAAATGAT+GGG 0.638754 1_4:-46822434 Msa0165950:intron
TCTTTGCCAGTGTAGCCGTG+AGG 0.645497 1_4:-46824238 Msa0165950:CDS
AGAGGAAGAAACCAAACGAG+AGG 0.655498 1_4:-46825253 Msa0165950:five_prime_UTR
TTGATGCTGATTTAGCTGGA+GGG 0.659691 1_4:-46822391 Msa0165950:CDS
AGAAATCAGATCAAAATGGG+AGG 0.672358 1_4:-46825212 Msa0165950:exon
TGGGAGGAAAATGTCCACAC+AGG 0.692313 1_4:-46825196 Msa0165950:CDS
TCAGCATCAAGTTGAGTGTG+TGG 0.703337 1_4:+46822404 None:intergenic
AAAACCCTAAATCAGTACAG+TGG 0.719032 1_4:-46825292 Msa0165950:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTATTATTATTCTTA+TGG - chr1_4:46823128-46823147 Msa0165950:intron 10.0%
!!! TGATAATAATTGATTTTGAA+TGG - chr1_4:46822583-46822602 Msa0165950:intron 15.0%
!! TGATTATGTAAAATTGATTA+TGG - chr1_4:46822608-46822627 Msa0165950:intron 15.0%
!! AATTGAAAATTGATTATGTT+TGG - chr1_4:46822645-46822664 Msa0165950:intron 15.0%
!! TATTCACTAATATAAAAACA+GGG + chr1_4:46823391-46823410 None:intergenic 15.0%
!! ATATTCACTAATATAAAAAC+AGG + chr1_4:46823392-46823411 None:intergenic 15.0%
!!! ATTGACTTATTTAAACTTTT+GGG + chr1_4:46823604-46823623 None:intergenic 15.0%
!!! AATTGACTTATTTAAACTTT+TGG + chr1_4:46823605-46823624 None:intergenic 15.0%
!!! TGAAATTTTTAGAATTATTC+TGG - chr1_4:46823869-46823888 Msa0165950:intron 15.0%
!!! TGAAATAATTTAGTTTTTTG+TGG - chr1_4:46824291-46824310 Msa0165950:intron 15.0%
!!! GAAATAATTTAGTTTTTTGT+GGG - chr1_4:46824292-46824311 Msa0165950:intron 15.0%
!!! AAATAATTTAGTTTTTTGTG+GGG - chr1_4:46824293-46824312 Msa0165950:intron 15.0%
!!! TTTTAGAGAATTCTAAATTA+TGG - chr1_4:46824425-46824444 Msa0165950:intron 15.0%
!! TTTAGAGAATTCTAAATTAT+GGG - chr1_4:46824426-46824445 Msa0165950:intron 15.0%
!!! ATTTTGAGTTGAAATGATTT+GGG - chr1_4:46822866-46822885 Msa0165950:intron 20.0%
!!! AGAATTGATTAGAACATTTT+TGG + chr1_4:46823006-46823025 None:intergenic 20.0%
!!! ATTTTAAGACAAAAAAACAC+AGG - chr1_4:46823303-46823322 Msa0165950:intron 20.0%
!! AACTATTAGAAAAGATTTAG+AGG - chr1_4:46824109-46824128 Msa0165950:intron 20.0%
!! TATATATTACTTAGCAAATG+CGG + chr1_4:46824403-46824422 None:intergenic 20.0%
!! TTAGAGAATTCTAAATTATG+GGG - chr1_4:46824427-46824446 Msa0165950:intron 20.0%
!!! GCTGAAATTGAATTATTTTT+CGG - chr1_4:46824798-46824817 Msa0165950:intron 20.0%
!! AAATAAACAGTAATATCAGA+AGG + chr1_4:46825056-46825075 None:intergenic 20.0%
!! AGAGAAGATATAGATTATAT+TGG + chr1_4:46825296-46825315 None:intergenic 20.0%
! CTAAGAAATCAGATCAAAAT+GGG - chr1_4:46822296-46822315 Msa0165950:three_prime_UTR 25.0%
! TTGATTATGTTTGGATTCAT+TGG - chr1_4:46822654-46822673 Msa0165950:intron 25.0%
! TGATTATGTTTGGATTCATT+GGG - chr1_4:46822655-46822674 Msa0165950:intron 25.0%
!!! GATTTTGAGTTGAAATGATT+TGG - chr1_4:46822865-46822884 Msa0165950:intron 25.0%
!!! ACACCTCTAAAATCAATTTT+TGG - chr1_4:46823026-46823045 Msa0165950:intron 25.0%
! TTACATACAAAGTGTATGTT+TGG + chr1_4:46823069-46823088 None:intergenic 25.0%
! ATTCTTATGGTTAAGACTTA+AGG - chr1_4:46823141-46823160 Msa0165950:intron 25.0%
!! TGTTTTTCGTTCTTATGTTT+TGG - chr1_4:46823201-46823220 Msa0165950:intron 25.0%
! AACATATCTTTCTTTCAGAT+AGG - chr1_4:46823483-46823502 Msa0165950:intron 25.0%
! ACATATCTTTCTTTCAGATA+GGG - chr1_4:46823484-46823503 Msa0165950:intron 25.0%
! ATAAGTCAATTAACCATAAC+TGG - chr1_4:46823614-46823633 Msa0165950:intron 25.0%
! AACATAGACAAGGTATATAT+GGG + chr1_4:46823734-46823753 None:intergenic 25.0%
! AAACATAGACAAGGTATATA+TGG + chr1_4:46823735-46823754 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG + chr1_4:46824092-46824111 None:intergenic 25.0%
! TAATGAGTTTGATCCAAATA+TGG - chr1_4:46824133-46824152 Msa0165950:intron 25.0%
! GTTCTATCATAATCCATATT+TGG + chr1_4:46824149-46824168 None:intergenic 25.0%
!! TGGATTATGATAGAACATTT+TGG - chr1_4:46824153-46824172 Msa0165950:intron 25.0%
! AACATAAAACTACATACAGT+GGG + chr1_4:46824564-46824583 None:intergenic 25.0%
!! GTTTTATGTTGTTCAGTAAT+TGG - chr1_4:46824574-46824593 Msa0165950:intron 25.0%
!! TGGATTTATACATGTTTTCA+AGG - chr1_4:46824594-46824613 Msa0165950:intron 25.0%
!! TTTGCGCATATATATTGTTT+TGG - chr1_4:46824678-46824697 Msa0165950:intron 25.0%
! TAAGTGCATTATGATGTAAT+AGG - chr1_4:46824886-46824905 Msa0165950:intron 25.0%
!! AGAGTATAGCTTTTCATTAA+AGG - chr1_4:46824982-46825001 Msa0165950:intron 25.0%
! AGTTACATAGACATTAACTT+TGG + chr1_4:46825167-46825186 None:intergenic 25.0%
! ATATTGCTTATCTCGTAATA+AGG + chr1_4:46825255-46825274 None:intergenic 25.0%
GATCTGATTTCTTAGGTTTA+GGG + chr1_4:46822291-46822310 None:intergenic 30.0%
TGATCTGATTTCTTAGGTTT+AGG + chr1_4:46822292-46822311 None:intergenic 30.0%
!! CCATTTTGATCTGATTTCTT+AGG + chr1_4:46822298-46822317 None:intergenic 30.0%
CCTAAGAAATCAGATCAAAA+TGG - chr1_4:46822295-46822314 Msa0165950:three_prime_UTR 30.0%
CGTTCAAAATTCTTGATCAA+AGG - chr1_4:46822377-46822396 Msa0165950:CDS 30.0%
AAATCTTCATCAAGAGGTAA+AGG + chr1_4:46822452-46822471 None:intergenic 30.0%
GTTTGCAAAATTTGTGTGTT+TGG - chr1_4:46822552-46822571 Msa0165950:intron 30.0%
!!! AATTTGTGTGTTTGGTTTTG+CGG - chr1_4:46822560-46822579 Msa0165950:intron 30.0%
CGAAACTAATGATTTAGTGT+AGG - chr1_4:46822739-46822758 Msa0165950:intron 30.0%
AACTAATGATTTAGTGTAGG+AGG - chr1_4:46822742-46822761 Msa0165950:intron 30.0%
TGTATGTGTATGTGTATGTT+TGG - chr1_4:46822823-46822842 Msa0165950:intron 30.0%
AATTGATACTACTTGAAGCT+AGG + chr1_4:46822966-46822985 None:intergenic 30.0%
! CAATTTTGCCTCTTAAAATG+TGG - chr1_4:46823090-46823109 Msa0165950:intron 30.0%
CGAAAAACAAAAAACGAGTT+GGG + chr1_4:46823190-46823209 None:intergenic 30.0%
ACGAAAAACAAAAAACGAGT+TGG + chr1_4:46823191-46823210 None:intergenic 30.0%
!!! TTTCGTTCTTATGTTTTGGT+TGG - chr1_4:46823205-46823224 Msa0165950:intron 30.0%
GAATGTTCGATAAGATTGAA+AGG + chr1_4:46823367-46823386 None:intergenic 30.0%
GTGAATATGCTTTATAGTTG+AGG - chr1_4:46823404-46823423 Msa0165950:intron 30.0%
AGAAGAAAACACTTCAAAAC+AGG + chr1_4:46823435-46823454 None:intergenic 30.0%
ACAAAATTCAGCTTGATTGA+AGG + chr1_4:46823561-46823580 None:intergenic 30.0%
! CTGAATTTTGTCCTTAATCT+AGG - chr1_4:46823570-46823589 Msa0165950:intron 30.0%
! GGACAAGCATATTTTACAAA+GGG + chr1_4:46823779-46823798 None:intergenic 30.0%
!! ATTATTCTGGAATGTTGTGT+TGG - chr1_4:46823882-46823901 Msa0165950:intron 30.0%
! GTAGTATGAAGAGTATATGT+TGG - chr1_4:46824045-46824064 Msa0165950:intron 30.0%
AGCATTCAAAATTGTGTGTT+AGG - chr1_4:46824478-46824497 Msa0165950:intron 30.0%
TACCAAGTAATTAACATGCA+TGG + chr1_4:46824533-46824552 None:intergenic 30.0%
CAACATAAAACTACATACAG+TGG + chr1_4:46824565-46824584 None:intergenic 30.0%
CAAGTGAAGATACTAGAAAT+TGG + chr1_4:46824634-46824653 None:intergenic 30.0%
CTTCACTTGAAATCTTAACT+TGG - chr1_4:46824645-46824664 Msa0165950:intron 30.0%
AAACATAGAGTTTGCAAGAA+TGG + chr1_4:46824716-46824735 None:intergenic 30.0%
ATGAGGTGGTTAAAATTGAT+TGG + chr1_4:46824848-46824867 None:intergenic 30.0%
!! ATTTAGTTTGCACTATGATG+AGG + chr1_4:46824865-46824884 None:intergenic 30.0%
ATTAACTTTGGTCCATTATC+TGG + chr1_4:46825155-46825174 None:intergenic 30.0%
!! TGTAACTTTCTTTTTCGTAG+TGG - chr1_4:46825180-46825199 Msa0165950:CDS 30.0%
TGAGAGATTATAGTAGAAAC+TGG - chr1_4:46825204-46825223 Msa0165950:exon 30.0%
AAAACCCTAAATCAGTACAG+TGG - chr1_4:46822219-46822238 Msa0165950:three_prime_UTR 35.0%
AGAAATCAGATCAAAATGGG+AGG - chr1_4:46822299-46822318 Msa0165950:three_prime_UTR 35.0%
! CAAGAATTTTGAACGACGAT+CGG + chr1_4:46822372-46822391 None:intergenic 35.0%
AAAGGCTTTCTATCTTCTTG+AGG + chr1_4:46822434-46822453 None:intergenic 35.0%
!! GGGCCAAAAATTGATTTTAG+AGG + chr1_4:46823032-46823051 None:intergenic 35.0%
! TGTTTGGTTCCATTTGTAGA+GGG + chr1_4:46823053-46823072 None:intergenic 35.0%
! ATGTTTGGTTCCATTTGTAG+AGG + chr1_4:46823054-46823073 None:intergenic 35.0%
! GTTTCGTTCCACATTTTAAG+AGG + chr1_4:46823101-46823120 None:intergenic 35.0%
! TCTATCAAGTGTTGTTCGTT+TGG - chr1_4:46823236-46823255 Msa0165950:intron 35.0%
AGACAAAAAAACACAGGAGA+CGG - chr1_4:46823309-46823328 Msa0165950:intron 35.0%
!! GAGTATTGAAACTGAAGCAA+AGG + chr1_4:46823342-46823361 None:intergenic 35.0%
GTATGAACTCATAAAGCAGA+TGG - chr1_4:46823455-46823474 Msa0165950:intron 35.0%
CTTCCATCCAATTTCTTACA+GGG + chr1_4:46823644-46823663 None:intergenic 35.0%
ACTTCCATCCAATTTCTTAC+AGG + chr1_4:46823645-46823664 None:intergenic 35.0%
TGTAAGAAATTGGATGGAAG+TGG - chr1_4:46823644-46823663 Msa0165950:intron 35.0%
GGTAAATGAAGTTATGCTTG+TGG - chr1_4:46823665-46823684 Msa0165950:intron 35.0%
CTTAAAGGCAAACATAGACA+AGG + chr1_4:46823744-46823763 None:intergenic 35.0%
! GGGACAAGCATATTTTACAA+AGG + chr1_4:46823780-46823799 None:intergenic 35.0%
GAAATAAGCTTAGGCAGTTT+GGG - chr1_4:46823995-46824014 Msa0165950:intron 35.0%
CTTCATACTACAGAATCTAC+AGG + chr1_4:46824036-46824055 None:intergenic 35.0%
!! AGTATATGTTGGCTCAAAAG+AGG - chr1_4:46824056-46824075 Msa0165950:intron 35.0%
! ACTAAGTGAGATTAGCTACA+TGG + chr1_4:46824190-46824209 None:intergenic 35.0%
ATGTAGCTAATCTCACTTAG+TGG - chr1_4:46824189-46824208 Msa0165950:intron 35.0%
TGTAGCTAATCTCACTTAGT+GGG - chr1_4:46824190-46824209 Msa0165950:intron 35.0%
TAATCTCACTTAGTGGGATA+AGG - chr1_4:46824196-46824215 Msa0165950:intron 35.0%
! TGGTCATTGTTGTTGTATTC+TGG - chr1_4:46824221-46824240 Msa0165950:CDS 35.0%
! TTCTTTCGAAGCTGCATTTT+GGG + chr1_4:46824458-46824477 None:intergenic 35.0%
! TTTCTTTCGAAGCTGCATTT+TGG + chr1_4:46824459-46824478 None:intergenic 35.0%
CTCCATGCATGTTAATTACT+TGG - chr1_4:46824528-46824547 Msa0165950:intron 35.0%
TGCAGTGTGAAACAAATGAT+GGG - chr1_4:46825077-46825096 Msa0165950:CDS 35.0%
CTTGATCAAAGGAGATGACA+TGG - chr1_4:46822388-46822407 Msa0165950:CDS 40.0%
TGATGAAGATTTGCCTGGAA+TGG - chr1_4:46822460-46822479 Msa0165950:intron 40.0%
GATGAAGATTTGCCTGGAAT+GGG - chr1_4:46822461-46822480 Msa0165950:intron 40.0%
TAGAGATATACTCGCAGTGA+AGG + chr1_4:46822499-46822518 None:intergenic 40.0%
GTGTAGGAGGTTTAGTATCA+TGG - chr1_4:46822755-46822774 Msa0165950:intron 40.0%
TAGGAGGTTTAGTATCATGG+TGG - chr1_4:46822758-46822777 Msa0165950:intron 40.0%
AGGAGGTTTAGTATCATGGT+GGG - chr1_4:46822759-46822778 Msa0165950:intron 40.0%
ACGGTGGATCATTGTGATTA+TGG - chr1_4:46822794-46822813 Msa0165950:intron 40.0%
!!! ATTTTTGGCCCCTCTACAAA+TGG - chr1_4:46823041-46823060 Msa0165950:intron 40.0%
! GTTTGGTTCCATTTGTAGAG+GGG + chr1_4:46823052-46823071 None:intergenic 40.0%
GGGAAAATGAGCCTAGATTA+AGG + chr1_4:46823584-46823603 None:intergenic 40.0%
TGGAAGACCCTGTAAGAAAT+TGG - chr1_4:46823634-46823653 Msa0165950:intron 40.0%
AGACCCTGTAAGAAATTGGA+TGG - chr1_4:46823638-46823657 Msa0165950:intron 40.0%
AGACAAGGTATATATGGGAC+TGG + chr1_4:46823729-46823748 None:intergenic 40.0%
GGGAGTAAAAACTCGCTTAA+AGG + chr1_4:46823759-46823778 None:intergenic 40.0%
CTGCAATATAAGCTGGGAAT+GGG + chr1_4:46823800-46823819 None:intergenic 40.0%
TCTGCAATATAAGCTGGGAA+TGG + chr1_4:46823801-46823820 None:intergenic 40.0%
GCAAGTCTGCAATATAAGCT+GGG + chr1_4:46823806-46823825 None:intergenic 40.0%
TGCAAGTCTGCAATATAAGC+TGG + chr1_4:46823807-46823826 None:intergenic 40.0%
AGGTGGTAGGAAATAAGCTT+AGG - chr1_4:46823986-46824005 Msa0165950:intron 40.0%
GGAAATAAGCTTAGGCAGTT+TGG - chr1_4:46823994-46824013 Msa0165950:intron 40.0%
!!! TAGTTTTTTGTGGGGCAATG+TGG - chr1_4:46824301-46824320 Msa0165950:intron 40.0%
!!! AGTTTTTTGTGGGGCAATGT+GGG - chr1_4:46824302-46824321 Msa0165950:intron 40.0%
TGCAGTGAACTAGAAGCAAT+GGG + chr1_4:46824772-46824791 None:intergenic 40.0%
ATGCAGTGAACTAGAAGCAA+TGG + chr1_4:46824773-46824792 None:intergenic 40.0%
! TAGTTTGCACTATGATGAGG+TGG + chr1_4:46824862-46824881 None:intergenic 40.0%
GTGCAGTGTGAAACAAATGA+TGG - chr1_4:46825076-46825095 Msa0165950:CDS 40.0%
!! CAACTTGATGCTGATTTAGC+TGG - chr1_4:46825116-46825135 Msa0165950:CDS 40.0%
!! TTGATGCTGATTTAGCTGGA+GGG - chr1_4:46825120-46825139 Msa0165950:CDS 40.0%
!! GCAGCCACTGTACTGATTTA+GGG + chr1_4:46822226-46822245 None:intergenic 45.0%
!! TGCAGCCACTGTACTGATTT+AGG + chr1_4:46822227-46822246 None:intergenic 45.0%
AGAGGAAGAAACCAAACGAG+AGG - chr1_4:46822258-46822277 Msa0165950:three_prime_UTR 45.0%
! AGGGTTTTTCACCTCTCGTT+TGG + chr1_4:46822272-46822291 None:intergenic 45.0%
AGGAAAATGTCCACACAGGA+AGG - chr1_4:46822319-46822338 Msa0165950:three_prime_UTR 45.0%
CCAGGCAAATCTTCATCAAG+AGG + chr1_4:46822458-46822477 None:intergenic 45.0%
CCTCTTGATGAAGATTTGCC+TGG - chr1_4:46822455-46822474 Msa0165950:intron 45.0%
CAATAGTGTTGTCCCATTCC+AGG + chr1_4:46822476-46822495 None:intergenic 45.0%
! TGGTGGGTATGTCAACATCA+CGG - chr1_4:46822775-46822794 Msa0165950:intron 45.0%
CTTAAAATGCTCGTCCCTCA+CGG + chr1_4:46823291-46823310 None:intergenic 45.0%
CTTACAGGGTCTTCCAGTTA+TGG + chr1_4:46823630-46823649 None:intergenic 45.0%
GGAATGTTGTGTTGGATGAG+TGG - chr1_4:46823890-46823909 Msa0165950:intron 45.0%
GGATGAGTGGTAAGACTAGA+CGG - chr1_4:46823903-46823922 Msa0165950:intron 45.0%
GATGAGTGGTAAGACTAGAC+GGG - chr1_4:46823904-46823923 Msa0165950:intron 45.0%
AGACTAGACGGGATAGGATT+AGG - chr1_4:46823915-46823934 Msa0165950:intron 45.0%
CTCCAACTCTCTCTCTCTAA+CGG + chr1_4:46823948-46823967 None:intergenic 45.0%
AGTAGCACCTGTGGTAGAAA+AGG - chr1_4:46823966-46823985 Msa0165950:intron 45.0%
!! TGTTGGCTCAAAAGAGGTAG+CGG - chr1_4:46824062-46824081 Msa0165950:intron 45.0%
TCACTTAGTGGGATAAGGCT+TGG - chr1_4:46824201-46824220 Msa0165950:intron 45.0%
!!! GTTTTTTGTGGGGCAATGTG+GGG - chr1_4:46824303-46824322 Msa0165950:intron 45.0%
!! TCAGCATCAAGTTGAGTGTG+TGG + chr1_4:46825110-46825129 None:intergenic 45.0%
!! CTTGATGCTGATTTAGCTGG+AGG - chr1_4:46825119-46825138 Msa0165950:CDS 45.0%
GGCTGCAGAAGAAGAGTAAG+AGG - chr1_4:46822240-46822259 Msa0165950:three_prime_UTR 50.0%
TGGGAGGAAAATGTCCACAC+AGG - chr1_4:46822315-46822334 Msa0165950:three_prime_UTR 50.0%
CTCTTCTTCACCTTCCTGTG+TGG + chr1_4:46822332-46822351 None:intergenic 50.0%
TGGGTATGTCAACATCACGG+TGG - chr1_4:46822778-46822797 Msa0165950:intron 50.0%
GTGGTAAGACTAGACGGGAT+AGG - chr1_4:46823909-46823928 Msa0165950:intron 50.0%
CACCGTTAGAGAGAGAGAGT+TGG - chr1_4:46823943-46823962 Msa0165950:intron 50.0%
AGCACCTGTGGTAGAAAAGG+TGG - chr1_4:46823969-46823988 Msa0165950:intron 50.0%
! CCTACCACCTTTTCTACCAC+AGG + chr1_4:46823976-46823995 None:intergenic 50.0%
CCTGTGGTAGAAAAGGTGGT+AGG - chr1_4:46823973-46823992 Msa0165950:intron 50.0%
!! TGCTGATTTAGCTGGAGGGA+TGG - chr1_4:46825124-46825143 Msa0165950:CDS 50.0%
! GCTGATTTAGCTGGAGGGAT+GGG - chr1_4:46825125-46825144 Msa0165950:CDS 50.0%
GGGATGGGAATGCCAGATAA+TGG - chr1_4:46825140-46825159 Msa0165950:CDS 50.0%
TCTTTGCCAGTGTAGCCGTG+AGG - chr1_4:46823273-46823292 Msa0165950:intron 55.0%
CTTTGCCAGTGTAGCCGTGA+GGG - chr1_4:46823274-46823293 Msa0165950:intron 55.0%
GAGAGTTGGAGTAGCACCTG+TGG - chr1_4:46823957-46823976 Msa0165950:intron 55.0%
GCAATGTGGGGCAAGGTTGA+TGG - chr1_4:46824315-46824334 Msa0165950:intron 55.0%
TTGTGGGGCAATGTGGGGCA+AGG - chr1_4:46824308-46824327 Msa0165950:intron 60.0%
CTCGTCCCTCACGGCTACAC+TGG + chr1_4:46823282-46823301 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 46822204 46825329 46822204 ID=Msa0165950;Name=Msa0165950
chr1_4 mRNA 46822204 46825329 46822204 ID=Msa0165950-mRNA-1;Parent=Msa0165950;Name=Msa0165950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=110|1|1|1|0.5|0.66|3|145|119
chr1_4 exon 46822204 46822451 46822204 ID=Msa0165950-mRNA-1:exon:13500;Parent=Msa0165950-mRNA-1
chr1_4 exon 46824203 46824265 46824203 ID=Msa0165950-mRNA-1:exon:13499;Parent=Msa0165950-mRNA-1
chr1_4 exon 46825026 46825329 46825026 ID=Msa0165950-mRNA-1:exon:13498;Parent=Msa0165950-mRNA-1
chr1_4 five_prime_UTR 46825220 46825329 46825220 ID=Msa0165950-mRNA-1:five_prime_utr;Parent=Msa0165950-mRNA-1
chr1_4 CDS 46825026 46825219 46825026 ID=Msa0165950-mRNA-1:cds;Parent=Msa0165950-mRNA-1
chr1_4 CDS 46824203 46824265 46824203 ID=Msa0165950-mRNA-1:cds;Parent=Msa0165950-mRNA-1
chr1_4 CDS 46822349 46822451 46822349 ID=Msa0165950-mRNA-1:cds;Parent=Msa0165950-mRNA-1
chr1_4 three_prime_UTR 46822204 46822348 46822204 ID=Msa0165950-mRNA-1:three_prime_utr;Parent=Msa0165950-mRNA-1
Gene Sequence

>Msa0165950

ATGGGAGGAAAATGTCCACACAGGAAGGTGAAGAAGAGAAGATTATCTCACAAAACCGATCGTCGTTCAAAATTCTTGATCAAAGGAGATGACATGGTTTATGATGAATTGAATAAGCCTCAAGAAGATAGAAAGCCTTTACCTCTTGATGAAGATTTGCCTGGAATGGGACAACACTATTGCCTTCACTGCGATCGATTCTTTGCCAGTGTAGCCGTGAGGGACGAGCATTTTAAGACAAAAAAACACAGGAGACGTGTGAAACAAATGATGGGCGATGCACCACACACTCAACTTGATGCTGATTTAGCTGGAGGGATGGGAATGCCAGATAATGGACCAAAGTTAATGTCTATGTAA

Protein sequence

>Msa0165950

MGGKCPHRKVKKRRLSHKTDRRSKFLIKGDDMVYDELNKPQEDRKPLPLDEDLPGMGQHYCLHCDRFFASVAVRDEHFKTKKHRRRVKQMMGDAPHTQLDADLAGGMGMPDNGPKLMSM*