AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349570 MtrunA17_Chr5g0397241 96.667 180 0 1 27 200 1 180 1.16e-122 344
Msa1349570 MtrunA17_Chr8g0387411 90.556 180 8 2 27 200 1 177 1.79e-86 252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349570 AT4G25740.1 78.065 155 23 2 27 175 1 150 3.57e-72 216
Msa1349570 AT5G52650.1 76.129 155 30 2 27 175 1 154 1.61e-65 199
Msa1349570 AT5G41520.1 72.078 154 32 6 27 173 1 150 6.52e-63 193
Msa1349570 AT4G25740.2 59.887 177 32 2 27 197 1 144 3.37e-52 165
Msa1349570 AT5G41520.2 75.000 108 23 4 66 173 1 104 3.20e-42 139

Find 86 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTGATAGTTCTTGATTT+TGG 0.149376 tig0010967:+46485 Msa1349570:three_prime_UTR
TGCTTCAGCTCATGCAGTTT+TGG 0.202034 tig0010967:+46278 Msa1349570:three_prime_UTR
AGAGGACCTGCTGGTGAATT+TGG 0.215916 tig0010967:+44581 Msa1349570:CDS
AGATTTGGCACATCGATTTC+TGG 0.226768 tig0010967:-44192 None:intergenic
AGCTTAATCACTTGCAGATT+TGG 0.235590 tig0010967:-44207 None:intergenic
TGCAAAGAAGGATTTCAATT+TGG 0.241273 tig0010967:+44161 Msa1349570:CDS
TTGCTTGGATGAACTATTAC+TGG 0.272334 tig0010967:+44271 Msa1349570:CDS
ACCTAAAATCATTTCTGAAT+TGG 0.279873 tig0010967:+46567 Msa1349570:three_prime_UTR
GCTGACTACAGGCCTTCTTT+TGG 0.293788 tig0010967:+44626 Msa1349570:CDS
CCTGGCTTCGGTCGTGGTTC+TGG 0.294525 tig0010967:+46163 Msa1349570:CDS
TTTGATGGAGAAAGGAGATT+TGG 0.304890 tig0010967:+44527 Msa1349570:CDS
GGTCGTGGTTCTGGTGGCTT+TGG 0.306704 tig0010967:+46172 Msa1349570:CDS
CTCCTTTCTCCATCAAATCT+TGG 0.337377 tig0010967:-44521 None:intergenic
AAGCCAGCTGGAAGGCCCTT+TGG 0.353720 tig0010967:+44381 Msa1349570:CDS
TGATGCAGAGCTTCAAATCT+AGG 0.370024 tig0010967:+44229 Msa1349570:intron
TACTGGTTCCTTACCAATGA+TGG 0.373159 tig0010967:+44288 Msa1349570:CDS
AGGCCCTTTGGTGGTCCTCC+TGG 0.384336 tig0010967:+44393 Msa1349570:CDS
CAGGGCCCTGGTGGTAGACC+TGG 0.396705 tig0010967:+46145 Msa1349570:intron
GATTTGGCACATCGATTTCT+GGG 0.410537 tig0010967:-44191 None:intergenic
TAAGCATCGTTTGAACTAGT+TGG 0.424537 tig0010967:-46199 None:intergenic
GAGAAACTCAATTCCATCAT+TGG 0.425707 tig0010967:-44301 None:intergenic
CTGCCTCTACATTGCAATCA+TGG 0.430480 tig0010967:+43893 Msa1349570:CDS
CCACCAAAGGGCCTTCCAGC+TGG 0.433378 tig0010967:-44384 None:intergenic
ATGATGGAATTGAGTTTCTC+AGG 0.441503 tig0010967:+44304 Msa1349570:CDS
AATTCACCAGCAGGTCCTCT+TGG 0.445100 tig0010967:-44578 None:intergenic
TCCTGCTACTTTGAAGAAGC+AGG 0.450643 tig0010967:+44356 Msa1349570:CDS
GCCTGCTTCTTCAAAGTAGC+AGG 0.453311 tig0010967:-44357 None:intergenic
ATTCACCAGCAGGTCCTCTT+GGG 0.458492 tig0010967:-44577 None:intergenic
CTGACTCTATTGCAGGGCCC+TGG 0.459984 tig0010967:+46133 Msa1349570:intron
AGGGGCCCACCAAGATTTGA+TGG 0.462295 tig0010967:+44512 Msa1349570:intron
GGGAGTTTGCTATGCAAAGA+AGG 0.473090 tig0010967:+44149 Msa1349570:CDS
CTTTCTCCATCAAATCTTGG+TGG 0.474542 tig0010967:-44518 None:intergenic
AAGAAGCAGGCTAAGCCAGC+TGG 0.479610 tig0010967:+44369 Msa1349570:CDS
GGTAGACCTGGCTTCGGTCG+TGG 0.484946 tig0010967:+46157 Msa1349570:CDS
GATGGAGAAAGGAGATTTGG+TGG 0.486392 tig0010967:+44530 Msa1349570:CDS
GGCTTCGGTCGTGGTTCTGG+TGG 0.490892 tig0010967:+46166 Msa1349570:CDS
CAGGTCCTCTTGGGCCTCCA+CGG 0.492606 tig0010967:-44568 None:intergenic
GACGATAGATCAAGGACTGT+TGG 0.492741 tig0010967:+46448 Msa1349570:three_prime_UTR
CACCAAGATTTGATGGAGAA+AGG 0.498036 tig0010967:+44519 Msa1349570:CDS
TTTCTCCATCAAATCTTGGT+GGG 0.498924 tig0010967:-44517 None:intergenic
ATCACCAGGAGGACCACCAA+AGG 0.501155 tig0010967:-44397 None:intergenic
CCAGCTGGAAGGCCCTTTGG+TGG 0.502902 tig0010967:+44384 Msa1349570:CDS
GTGGAGCTCCAGCTGACTAC+AGG 0.506847 tig0010967:+44615 Msa1349570:CDS
AAGATTATTACCCCAAAAGA+AGG 0.511567 tig0010967:-44638 None:intergenic
CCTGGTGGTAGACCTGGCTT+CGG 0.513224 tig0010967:+46151 Msa1349570:CDS
TCTCCTCCAAATTCACCAGC+AGG 0.516678 tig0010967:-44587 None:intergenic
AAAGAAGGCCTGTAGTCAGC+TGG 0.516901 tig0010967:-44623 None:intergenic
GTCCTCCTGGTGATCGCCCT+AGG 0.527814 tig0010967:+44406 Msa1349570:CDS
GGACCTGCTGGTGAATTTGG+AGG 0.530997 tig0010967:+44584 Msa1349570:CDS
CCAGAACCACGACCGAAGCC+AGG 0.533716 tig0010967:-46163 None:intergenic
CTACAAGTCGTTTGATCCAT+CGG 0.537894 tig0010967:+46334 Msa1349570:three_prime_UTR
CCGAAGCCAGGTCTACCACC+AGG 0.539431 tig0010967:-46151 None:intergenic
AATGTTTGGACGATAGATCA+AGG 0.541184 tig0010967:+46440 Msa1349570:three_prime_UTR
ACTCAATTCCATCATTGGTA+AGG 0.545851 tig0010967:-44296 None:intergenic
GGAGGCCCAAGAGGACCTGC+TGG 0.551228 tig0010967:+44572 Msa1349570:CDS
GGTATTTGCAGATCTCTCTA+CGG 0.553257 tig0010967:-44028 None:intergenic
TTTAGAAGATTGCAGCGCGA+AGG 0.554374 tig0010967:+43827 Msa1349570:intron
TCAAACGACTTGTAGTGGAG+GGG 0.558670 tig0010967:-46326 None:intergenic
CACAAGACATACCTTGGAAG+AGG 0.559210 tig0010967:-44049 None:intergenic
TTAGAAGATTGCAGCGCGAA+GGG 0.562488 tig0010967:+43828 Msa1349570:intron
GTAGCAGGAACAATCTCAGA+TGG 0.565512 tig0010967:-44342 None:intergenic
TCACCAGGAGGACCACCAAA+GGG 0.567521 tig0010967:-44396 None:intergenic
ACTCTATTGCAGGGCCCTGG+TGG 0.567801 tig0010967:+46136 Msa1349570:intron
ATGGATCAAACGACTTGTAG+TGG 0.567997 tig0010967:-46331 None:intergenic
AGCAGGCTAAGCCAGCTGGA+AGG 0.574627 tig0010967:+44373 Msa1349570:CDS
TATTAAAATAAAATGTCCGA+TGG 0.576095 tig0010967:-46350 None:intergenic
AATTACCTAGGGCGATCACC+AGG 0.586300 tig0010967:-44411 None:intergenic
ATCAAACGACTTGTAGTGGA+GGG 0.587552 tig0010967:-46327 None:intergenic
GGCCTCCACGGTATCCATCA+CGG 0.588978 tig0010967:-44556 None:intergenic
ATCTGCAAATACCTCTTCCA+AGG 0.590451 tig0010967:+44038 Msa1349570:CDS
CAAACGACTTGTAGTGGAGG+GGG 0.595417 tig0010967:-46325 None:intergenic
GATGCAGAGCTTCAAATCTA+GGG 0.604467 tig0010967:+44230 Msa1349570:intron
TCAAATCTAGGGAATATGTG+AGG 0.607518 tig0010967:+44241 Msa1349570:CDS
CAAATCTAGGGAATATGTGA+GGG 0.609242 tig0010967:+44242 Msa1349570:CDS
ATACCATGATTGCAATGTAG+AGG 0.611113 tig0010967:-43896 None:intergenic
GCAGCGCGAAGGGATTAGAA+AGG 0.617881 tig0010967:+43838 Msa1349570:intron
GGATACCGTGGAGGCCCAAG+AGG 0.629598 tig0010967:+44563 Msa1349570:CDS
AGATTTGGTGGTGACCGTGA+TGG 0.637340 tig0010967:+44542 Msa1349570:CDS
GATCAAACGACTTGTAGTGG+AGG 0.655589 tig0010967:-46328 None:intergenic
GGTGAATTTGGAGGAGACAA+AGG 0.655884 tig0010967:+44593 Msa1349570:CDS
GAATTTGGAGGAGACAAAGG+TGG 0.658883 tig0010967:+44596 Msa1349570:CDS
CGAAGCCAGGTCTACCACCA+GGG 0.679017 tig0010967:-46150 None:intergenic
CAGCACAACAGAAACTTCAG+CGG 0.680567 tig0010967:-43873 None:intergenic
GACCGTGATGGATACCGTGG+AGG 0.697879 tig0010967:+44554 Msa1349570:CDS
GGTGACCGTGATGGATACCG+TGG 0.715974 tig0010967:+44551 Msa1349570:CDS
TACCTAGGGCGATCACCAGG+AGG 0.726307 tig0010967:-44408 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTTTTTATATCATTTTT+TGG - tig0010967:42332-42351 None:intergenic 10.0%
!! AAACAAAAAATGAATAAAAT+TGG - tig0010967:43980-43999 None:intergenic 10.0%
!!! TTTTTTTATGTTTTGTTATT+TGG + tig0010967:44460-44479 Msa1349570:intron 10.0%
!! AAATAAATATAAAAATTGAG+TGG + tig0010967:45710-45729 Msa1349570:intron 10.0%
!! AATAAATATAAAAATTGAGT+GGG + tig0010967:45711-45730 Msa1349570:intron 10.0%
!!! TTCTAAATCAAAAGTATTTT+TGG + tig0010967:40674-40693 Msa1349570:intron 15.0%
!!! TTGTTTAAATTTTGTTTCTT+TGG + tig0010967:41079-41098 Msa1349570:intron 15.0%
!! GCAAATATAAACAAAAATAA+AGG + tig0010967:42217-42236 Msa1349570:intron 15.0%
!! ATATAATGATACATTTACAA+TGG + tig0010967:42275-42294 Msa1349570:intron 15.0%
!! TATAATGATACATTTACAAT+GGG + tig0010967:42276-42295 Msa1349570:intron 15.0%
!!! TTTGTTTTTTCATATTCAAA+AGG - tig0010967:43464-43483 None:intergenic 15.0%
!!! TTCTAAAATACATATAAACT+TGG + tig0010967:44985-45004 Msa1349570:intron 15.0%
!!! TCTAAAATACATATAAACTT+GGG + tig0010967:44986-45005 Msa1349570:intron 15.0%
!! ATAAATATAAAAATTGAGTG+GGG + tig0010967:45712-45731 Msa1349570:intron 15.0%
!!! TATGAAAACTTACTTGTTAA+TGG - tig0010967:40983-41002 None:intergenic 20.0%
!! TACAAACATAAAAAGCTTAA+TGG - tig0010967:41014-41033 None:intergenic 20.0%
!!! ATAATACATGTTGTTTTGAA+AGG - tig0010967:41872-41891 None:intergenic 20.0%
!! GAAATGAACAATAAAACTTT+CGG + tig0010967:41889-41908 Msa1349570:intron 20.0%
!! AAATGAACAATAAAACTTTC+GGG + tig0010967:41890-41909 Msa1349570:intron 20.0%
!! TTGAATTTATCCAATTATAG+AGG + tig0010967:41943-41962 Msa1349570:intron 20.0%
!! TATTTAATACGCAACTTTAT+TGG + tig0010967:42064-42083 Msa1349570:intron 20.0%
!! ATAATGATACATTTACAATG+GGG + tig0010967:42277-42296 Msa1349570:intron 20.0%
!!! CTTTTTATATCATTTTTTGG+TGG - tig0010967:42329-42348 None:intergenic 20.0%
!! TGTGTAAAACTTGTAAAAAA+AGG + tig0010967:42785-42804 Msa1349570:intron 20.0%
!!! ATTTTTCTCGTATGATATTT+TGG - tig0010967:43049-43068 None:intergenic 20.0%
!! TGATTTGAATGCTATAATAA+AGG + tig0010967:43307-43326 Msa1349570:intron 20.0%
!! TAACAAAGAGAAAGTAAATT+AGG + tig0010967:43803-43822 Msa1349570:intron 20.0%
!! AACAAAGAGAAAGTAAATTA+GGG + tig0010967:43804-43823 Msa1349570:intron 20.0%
!! AATTCCAAATTAATTACCTA+GGG - tig0010967:44425-44444 None:intergenic 20.0%
!!! TTTATGTTTTGTTATTTGGT+CGG + tig0010967:44464-44483 Msa1349570:intron 20.0%
!! TCAAATCAAAGATAATATTG+AGG - tig0010967:44807-44826 None:intergenic 20.0%
!! ACTTATATATATTGAGCAAA+GGG - tig0010967:45025-45044 None:intergenic 20.0%
!! AACTTATATATATTGAGCAA+AGG - tig0010967:45026-45045 None:intergenic 20.0%
!!! TTTAACTAGTTTAATAGAGT+TGG + tig0010967:45179-45198 Msa1349570:intron 20.0%
!!! GATTTAGCTTTTGAAATATA+AGG + tig0010967:45809-45828 Msa1349570:intron 20.0%
!! TATTAAAATAAAATGTCCGA+TGG - tig0010967:46353-46372 None:intergenic 20.0%
!!! ATGATGATTTTGTTAATGTT+TGG + tig0010967:46426-46445 Msa1349570:three_prime_UTR 20.0%
!!! AGAAATGATTTTAGGTTATT+GGG - tig0010967:46563-46582 None:intergenic 20.0%
!!! CCTTAAATTTTAGAACAACT+CGG + tig0010967:40618-40637 Msa1349570:intron 25.0%
! TATACAATCCAAACATAGTT+CGG + tig0010967:40643-40662 Msa1349570:intron 25.0%
! TATATAATCCGAACTATGTT+TGG - tig0010967:40654-40673 None:intergenic 25.0%
! GATTATGTTTGCGTTTAAAA+CGG - tig0010967:40873-40892 None:intergenic 25.0%
!! ATTTGAACTTGAAGGAATTT+TGG - tig0010967:40949-40968 None:intergenic 25.0%
!! ATGTTGTAGTTATGAGTTTT+AGG + tig0010967:41170-41189 Msa1349570:intron 25.0%
!! TGTTGTAGTTATGAGTTTTA+GGG + tig0010967:41171-41190 Msa1349570:intron 25.0%
! TAGAATTTATCCAATTTCAG+AGG - tig0010967:41661-41680 None:intergenic 25.0%
! AAAGGAAGAATAAAACTTTC+GGG - tig0010967:41714-41733 None:intergenic 25.0%
! GAAAGGAAGAATAAAACTTT+CGG - tig0010967:41715-41734 None:intergenic 25.0%
! AATTGTCTTACCTCTATAAT+TGG - tig0010967:41956-41975 None:intergenic 25.0%
! TCCTATAATTACATTGCATT+CGG - tig0010967:41999-42018 None:intergenic 25.0%
!!! TTGTTTTGTTTTAACCTAAG+TGG - tig0010967:42521-42540 None:intergenic 25.0%
! TATTCACAATGTTTCAAAGT+TGG + tig0010967:43165-43184 Msa1349570:intron 25.0%
! TTATAGCATTCAAATCATGA+TGG - tig0010967:43304-43323 None:intergenic 25.0%
! CTATAATAAAGGATGTTCAA+TGG + tig0010967:43318-43337 Msa1349570:intron 25.0%
! ATGAAGATCTAACAGAAAAT+TGG + tig0010967:43718-43737 Msa1349570:intron 25.0%
! TGAAGATCTAACAGAAAATT+GGG + tig0010967:43719-43738 Msa1349570:intron 25.0%
!! TTTCTCTTTGTTATATACGA+TGG - tig0010967:43796-43815 None:intergenic 25.0%
! TAAAATTGGAATCGCTTAAA+TGG - tig0010967:43966-43985 None:intergenic 25.0%
! TTATTGTGTTGTGTTTGAAT+TGG + tig0010967:44103-44122 Msa1349570:intron 25.0%
!!! AAACTGTTGTTATTTTTCAG+AGG + tig0010967:44128-44147 Msa1349570:intron 25.0%
!!! AACTGTTGTTATTTTTCAGA+GGG + tig0010967:44129-44148 Msa1349570:intron 25.0%
! CAATTCCAAATTAATTACCT+AGG - tig0010967:44426-44445 None:intergenic 25.0%
!!! TTTTGGGGTAATAATCTTAT+TGG + tig0010967:44643-44662 Msa1349570:intron 25.0%
!!! ATGTTGTGTTTGTTATGATT+TGG + tig0010967:44694-44713 Msa1349570:intron 25.0%
!!! TTTTGTTATGGTGTTTTATG+CGG + tig0010967:44756-44775 Msa1349570:intron 25.0%
! ATTTGTTCAGAAAAAGAAAC+AGG + tig0010967:45397-45416 Msa1349570:intron 25.0%
! TTCTACCTTACTTTGAATTA+TGG + tig0010967:45980-45999 Msa1349570:intron 25.0%
! CCAATAGAATTATATACATG+AGG - tig0010967:46085-46104 None:intergenic 25.0%
! CCTCATGTATATAATTCTAT+TGG + tig0010967:46082-46101 Msa1349570:intron 25.0%
!! ATGTAATGAGAATTTTGAAC+CGG + tig0010967:46384-46403 Msa1349570:three_prime_UTR 25.0%
!!! CAATTGATAGTTCTTGATTT+TGG + tig0010967:46485-46504 Msa1349570:three_prime_UTR 25.0%
!!! CAGAAATGATTTTAGGTTAT+TGG - tig0010967:46564-46583 None:intergenic 25.0%
! ACCTAAAATCATTTCTGAAT+TGG + tig0010967:46567-46586 Msa1349570:three_prime_UTR 25.0%
!! TCCAATTCAGAAATGATTTT+AGG - tig0010967:46571-46590 None:intergenic 25.0%
!! CCGAGTTGTTCTAAAATTTA+AGG - tig0010967:40621-40640 None:intergenic 30.0%
! CTTGAAGGAATTTTGGATTT+GGG - tig0010967:40942-40961 None:intergenic 30.0%
! ACTTGAAGGAATTTTGGATT+TGG - tig0010967:40943-40962 None:intergenic 30.0%
!! GTTGTTTGATTTGAACTTGA+AGG - tig0010967:40957-40976 None:intergenic 30.0%
CAAACATTTCATCAAACACT+TGG - tig0010967:41216-41235 None:intergenic 30.0%
! ATTGTGTAGATTTGAAGCAA+TGG + tig0010967:41269-41288 Msa1349570:intron 30.0%
ATAGGAGAATATCATTCAGT+TGG + tig0010967:41460-41479 Msa1349570:intron 30.0%
TAGGAGAATATCATTCAGTT+GGG + tig0010967:41461-41480 Msa1349570:intron 30.0%
!! AATTGTCTTACCTCTGAAAT+TGG + tig0010967:41648-41667 Msa1349570:intron 30.0%
CCTATAATTACATTGCATTC+GGG - tig0010967:41998-42017 None:intergenic 30.0%
!! GAAGTTCTAAGTTCAATCTT+GGG - tig0010967:42366-42385 None:intergenic 30.0%
AAGATTGAACTTAGAACTTC+CGG + tig0010967:42366-42385 Msa1349570:intron 30.0%
! GTTGTCTTGTATGAGTATTT+TGG - tig0010967:42402-42421 None:intergenic 30.0%
!!! TTTTGTTTTAACCTAAGTGG+AGG - tig0010967:42518-42537 None:intergenic 30.0%
TTCAAGAGGTTTCTTTGAAT+TGG - tig0010967:42583-42602 None:intergenic 30.0%
! ACCTCTTGAAATTTTCAAAG+AGG + tig0010967:42593-42612 Msa1349570:intron 30.0%
!!! CAATGTTGTTTTTTCATCCT+TGG - tig0010967:42636-42655 None:intergenic 30.0%
! AACAACATTGTTGTTGTAGA+AGG + tig0010967:42646-42665 Msa1349570:intron 30.0%
! ACAACATTGTTGTTGTAGAA+GGG + tig0010967:42647-42666 Msa1349570:intron 30.0%
GGTATATTTGGAAAATCAGT+TGG + tig0010967:42984-43003 Msa1349570:intron 30.0%
ACAATGCAATACCATGTTAT+AGG - tig0010967:43218-43237 None:intergenic 30.0%
ATGGTATTGCATTGTATTCA+AGG + tig0010967:43223-43242 Msa1349570:intron 30.0%
! GCTTAAATGGATTCAAAGAA+TGG - tig0010967:43953-43972 None:intergenic 30.0%
TATGTCTTGTGCAATAATCT+AGG + tig0010967:44061-44080 Msa1349570:intron 30.0%
ATGTCTTGTGCAATAATCTA+GGG + tig0010967:44062-44081 Msa1349570:intron 30.0%
TGCAAAGAAGGATTTCAATT+TGG + tig0010967:44161-44180 Msa1349570:CDS 30.0%
AAGATTATTACCCCAAAAGA+AGG - tig0010967:44641-44660 None:intergenic 30.0%
!! TTTGTTATGGTGTTTTATGC+GGG + tig0010967:44757-44776 Msa1349570:intron 30.0%
!! TGTTTTATGCGGGTTAATTT+TGG + tig0010967:44767-44786 Msa1349570:intron 30.0%
! TTTTCATTGTCAAGTAGACT+TGG + tig0010967:44875-44894 Msa1349570:intron 30.0%
TATATGCAAAACAAGTGTAG+TGG + tig0010967:45124-45143 Msa1349570:intron 30.0%
! TTTAATAGAGTTGGTTCCAA+TGG + tig0010967:45188-45207 Msa1349570:intron 30.0%
!! ATTGTTCTATCCAAGTTGAT+AGG + tig0010967:45214-45233 Msa1349570:intron 30.0%
!! TTGTTCTATCCAAGTTGATA+GGG + tig0010967:45215-45234 Msa1349570:intron 30.0%
!! CAAGCATACTCATTTTTATG+TGG - tig0010967:45376-45395 None:intergenic 30.0%
CACATAAAAATGAGTATGCT+TGG + tig0010967:45374-45393 Msa1349570:intron 30.0%
CACTTTACAGTAAGAAAGAA+TGG + tig0010967:45455-45474 Msa1349570:intron 30.0%
GAGATAAGAGTAAGAAAGAA+TGG + tig0010967:45477-45496 Msa1349570:intron 30.0%
ATAGTGTATACCAACTTGTA+GGG - tig0010967:45955-45974 None:intergenic 30.0%
ATGCACCATAATTCAAAGTA+AGG - tig0010967:45988-46007 None:intergenic 30.0%
ATTATATACATGAGGAAAGC+AGG - tig0010967:46077-46096 None:intergenic 30.0%
CAGAAGAATAAAACTTGATC+AGG - tig0010967:46116-46135 None:intergenic 30.0%
TCAAACGATGCTTAAATGTA+TGG + tig0010967:46208-46227 Msa1349570:intron 30.0%
! TGTAATGAGAATTTTGAACC+GGG + tig0010967:46385-46404 Msa1349570:three_prime_UTR 30.0%
!! AGAGTGTTTTACAAAGCTAA+CGG + tig0010967:46535-46554 Msa1349570:three_prime_UTR 30.0%
! TTGGGTGATTTGAGAGATTT+TGG - tig0010967:40924-40943 None:intergenic 35.0%
TGCTTGAACGTCAAACATAT+CGG - tig0010967:41295-41314 None:intergenic 35.0%
TAGAAGATCGTGATTAGGTA+GGG + tig0010967:41604-41623 Msa1349570:intron 35.0%
AGACAATTGTTGCAGTTGAA+AGG - tig0010967:41636-41655 None:intergenic 35.0%
TTCATATAAGACGAGTGTCA+CGG + tig0010967:41772-41791 Msa1349570:intron 35.0%
GAGTCATCACATAAAGAATG+AGG - tig0010967:41804-41823 None:intergenic 35.0%
TGATGACTCGTCTTATATGA+GGG + tig0010967:41815-41834 Msa1349570:intron 35.0%
CCCGAATGCAATGTAATTAT+AGG + tig0010967:41995-42014 Msa1349570:intron 35.0%
!! GGAAGTTCTAAGTTCAATCT+TGG - tig0010967:42367-42386 None:intergenic 35.0%
!!! GTATTTTGGAGAAGAGTATC+CGG - tig0010967:42388-42407 None:intergenic 35.0%
! GTTAAACAACAAGAGTGCAA+AGG - tig0010967:42496-42515 None:intergenic 35.0%
!! TTGTTGTTTAACCTCCACTT+AGG + tig0010967:42504-42523 Msa1349570:intron 35.0%
! GCCTCTTTGAAAATTTCAAG+AGG - tig0010967:42597-42616 None:intergenic 35.0%
!! AAGTTTGGAGGGGTATTTAT+CGG + tig0010967:42714-42733 Msa1349570:intron 35.0%
!!! AAGAACACACGTTTTTTGGA+CGG - tig0010967:42839-42858 None:intergenic 35.0%
!!! TCTCAAGAACACACGTTTTT+TGG - tig0010967:42843-42862 None:intergenic 35.0%
AATATACCCATGTGTGAGTT+AGG - tig0010967:42972-42991 None:intergenic 35.0%
AACTCACACATGGGTATATT+TGG + tig0010967:42972-42991 Msa1349570:intron 35.0%
AAAGTTGGAGCATGAGTTTA+CGG + tig0010967:43180-43199 Msa1349570:intron 35.0%
!! CGTGTTGGAATTTGTTAGAA+AGG - tig0010967:43430-43449 None:intergenic 35.0%
AAGGTTTATTGCTTACGTGT+TGG - tig0010967:43445-43464 None:intergenic 35.0%
! GTATTTTCGGCAATTCAGTT+GGG + tig0010967:43647-43666 Msa1349570:intron 35.0%
TTTCTATTTGGGCTTACTCA+TGG - tig0010967:43745-43764 None:intergenic 35.0%
ATGAGTAAGCCCAAATAGAA+AGG + tig0010967:43744-43763 Msa1349570:intron 35.0%
ATACCATGATTGCAATGTAG+AGG - tig0010967:43899-43918 None:intergenic 35.0%
TTATTGCACAAGACATACCT+TGG - tig0010967:44058-44077 None:intergenic 35.0%
AGCTTAATCACTTGCAGATT+TGG - tig0010967:44210-44229 None:intergenic 35.0%
TCAAATCTAGGGAATATGTG+AGG + tig0010967:44241-44260 Msa1349570:CDS 35.0%
CAAATCTAGGGAATATGTGA+GGG + tig0010967:44242-44261 Msa1349570:CDS 35.0%
TTGCTTGGATGAACTATTAC+TGG + tig0010967:44271-44290 Msa1349570:CDS 35.0%
ACTCAATTCCATCATTGGTA+AGG - tig0010967:44299-44318 None:intergenic 35.0%
GAGAAACTCAATTCCATCAT+TGG - tig0010967:44304-44323 None:intergenic 35.0%
! ATGATGGAATTGAGTTTCTC+AGG + tig0010967:44304-44323 Msa1349570:CDS 35.0%
ATCGCCCTAGGTAATTAATT+TGG + tig0010967:44418-44437 Msa1349570:intron 35.0%
TATTTGGTCGGTTGATTGAA+TGG + tig0010967:44476-44495 Msa1349570:intron 35.0%
!!! TGAATGGAATGTGTTTTGAC+AGG + tig0010967:44492-44511 Msa1349570:intron 35.0%
!!! GAATGGAATGTGTTTTGACA+GGG + tig0010967:44493-44512 Msa1349570:intron 35.0%
!!! AATGGAATGTGTTTTGACAG+GGG + tig0010967:44494-44513 Msa1349570:intron 35.0%
TTTCTCCATCAAATCTTGGT+GGG - tig0010967:44520-44539 None:intergenic 35.0%
TTTGATGGAGAAAGGAGATT+TGG + tig0010967:44527-44546 Msa1349570:CDS 35.0%
GATACGATGATGATTCTGTT+CGG + tig0010967:44729-44748 Msa1349570:intron 35.0%
! CTGTTCGGTTCATTTTGTTA+TGG + tig0010967:44744-44763 Msa1349570:intron 35.0%
GCAATATACACAAGACACAA+GGG - tig0010967:44846-44865 None:intergenic 35.0%
AGCAATATACACAAGACACA+AGG - tig0010967:44847-44866 None:intergenic 35.0%
TGGATAGAACAATGAACCAT+TGG - tig0010967:45207-45226 None:intergenic 35.0%
!! ATGTTTTTGTGGGCAGAATT+GGG - tig0010967:45298-45317 None:intergenic 35.0%
!! AATGTTTTTGTGGGCAGAAT+TGG - tig0010967:45299-45318 None:intergenic 35.0%
ATTCTGCCCACAAAAACATT+CGG + tig0010967:45299-45318 Msa1349570:intron 35.0%
!! CCAAAACCGAATGTTTTTGT+GGG - tig0010967:45308-45327 None:intergenic 35.0%
!! TCCAAAACCGAATGTTTTTG+TGG - tig0010967:45309-45328 None:intergenic 35.0%
!! ACAAAAACATTCGGTTTTGG+AGG + tig0010967:45308-45327 Msa1349570:intron 35.0%
!!! CAAAAACATTCGGTTTTGGA+GGG + tig0010967:45309-45328 Msa1349570:intron 35.0%
ATAAATACCCAGATTGAGAG+AGG + tig0010967:45577-45596 Msa1349570:intron 35.0%
TCTCTTGGATAAAGTAGCAA+AGG + tig0010967:45638-45657 Msa1349570:intron 35.0%
GTACTATTAGCAGTATGTCA+CGG + tig0010967:45767-45786 Msa1349570:intron 35.0%
TACTATTAGCAGTATGTCAC+GGG + tig0010967:45768-45787 Msa1349570:intron 35.0%
TCAAAAGCTAAATCCAGTTG+TGG - tig0010967:45803-45822 None:intergenic 35.0%
AAGGAAATCGAGTCAATATG+AGG - tig0010967:45848-45867 None:intergenic 35.0%
CATAGTGTATACCAACTTGT+AGG - tig0010967:45956-45975 None:intergenic 35.0%
TATTCTTCTGACTCTATTGC+AGG + tig0010967:46126-46145 Msa1349570:intron 35.0%
ATTCTTCTGACTCTATTGCA+GGG + tig0010967:46127-46146 Msa1349570:intron 35.0%
! TAAGCATCGTTTGAACTAGT+TGG - tig0010967:46202-46221 None:intergenic 35.0%
GATGCTTAAATGTATGGCTT+TGG + tig0010967:46214-46233 Msa1349570:intron 35.0%
! TAAGCATCGTTTGAACTAGT+TGG - tig0010967:46202-46221 None:intergenic 35.0%
TCTACTAAAGCAAAAACACC+CGG - tig0010967:46406-46425 None:intergenic 35.0%
AATGTTTGGACGATAGATCA+AGG + tig0010967:46440-46459 Msa1349570:three_prime_UTR 35.0%
GACGTTCAAGCACAATTCAA+CGG + tig0010967:41303-41322 Msa1349570:intron 40.0%
!! TATCTTGGTGTCACGTTAAG+AGG + tig0010967:41354-41373 Msa1349570:intron 40.0%
CGACTAAATGAATTCAACCC+CGG + tig0010967:41387-41406 Msa1349570:intron 40.0%
ATTCTCCTATCGTCGAATGT+TGG - tig0010967:41450-41469 None:intergenic 40.0%
GAGAATATCATTCAGTTGGG+TGG + tig0010967:41464-41483 Msa1349570:intron 40.0%
CATTCAGTTGGGTGGAATTA+AGG + tig0010967:41472-41491 Msa1349570:intron 40.0%
! TCCTCTAGAAGATCGTGATT+AGG + tig0010967:41599-41618 Msa1349570:intron 40.0%
ACCTAATCACGATCTTCTAG+AGG - tig0010967:41603-41622 None:intergenic 40.0%
CTAGAAGATCGTGATTAGGT+AGG + tig0010967:41603-41622 Msa1349570:intron 40.0%
GTGACACTCGTCTTATATGA+AGG - tig0010967:41773-41792 None:intergenic 40.0%
GTGATGACTCGTCTTATATG+AGG + tig0010967:41814-41833 Msa1349570:intron 40.0%
! GAACAATTGATGGGTCATCT+TGG - tig0010967:42426-42445 None:intergenic 40.0%
TGCCATGAGGAACAATTGAT+GGG - tig0010967:42435-42454 None:intergenic 40.0%
! GATTTAGGGTTTAGGGTTTG+TGG - tig0010967:42549-42568 None:intergenic 40.0%
AAACCCTAAACCCTAAATCC+TGG + tig0010967:42550-42569 Msa1349570:intron 40.0%
!! TGGTTTTACGCCAGGATTTA+GGG - tig0010967:42563-42582 None:intergenic 40.0%
!!! TTGGTTTTACGCCAGGATTT+AGG - tig0010967:42564-42583 None:intergenic 40.0%
!!! CTTTGAATTGGTTTTACGCC+AGG - tig0010967:42571-42590 None:intergenic 40.0%
! CCTTGGTCTTTCATTGAAAG+AGG - tig0010967:42619-42638 None:intergenic 40.0%
CCTCTTTCAATGAAAGACCA+AGG + tig0010967:42616-42635 Msa1349570:intron 40.0%
! ATTGTTGTTGTAGAAGGGAG+AGG + tig0010967:42652-42671 Msa1349570:intron 40.0%
AGAGAATGTTAGATGGTGTG+AGG + tig0010967:42682-42701 Msa1349570:intron 40.0%
GAGAATGTTAGATGGTGTGA+GGG + tig0010967:42683-42702 Msa1349570:intron 40.0%
TTAGATGGTGTGAGGGAAAT+GGG + tig0010967:42690-42709 Msa1349570:intron 40.0%
TTAAGTCACGCTGAGCTATT+AGG + tig0010967:42920-42939 Msa1349570:intron 40.0%
! GTTGGCTTACACCTATAACA+TGG + tig0010967:43204-43223 Msa1349570:intron 40.0%
TTCAATGGTGCACAAACCAA+TGG + tig0010967:43333-43352 Msa1349570:intron 40.0%
ATGTGCACTCAACTAACCAT+TGG - tig0010967:43352-43371 None:intergenic 40.0%
TTGCGTTACTTAACTAACGC+AGG + tig0010967:43623-43642 Msa1349570:intron 40.0%
TGCGTTACTTAACTAACGCA+GGG + tig0010967:43624-43643 Msa1349570:intron 40.0%
!!! AACTAACGCAGGGGTATTTT+CGG + tig0010967:43634-43653 Msa1349570:intron 40.0%
! GGTATTTTCGGCAATTCAGT+TGG + tig0010967:43646-43665 Msa1349570:intron 40.0%
GGTATTTGCAGATCTCTCTA+CGG - tig0010967:44031-44050 None:intergenic 40.0%
ATCTGCAAATACCTCTTCCA+AGG + tig0010967:44038-44057 Msa1349570:CDS 40.0%
!! GATTTGGCACATCGATTTCT+GGG - tig0010967:44194-44213 None:intergenic 40.0%
!! AGATTTGGCACATCGATTTC+TGG - tig0010967:44195-44214 None:intergenic 40.0%
TGATGCAGAGCTTCAAATCT+AGG + tig0010967:44229-44248 Msa1349570:intron 40.0%
GATGCAGAGCTTCAAATCTA+GGG + tig0010967:44230-44249 Msa1349570:intron 40.0%
! ATGTGAGGGAAACTTTTGCT+TGG + tig0010967:44256-44275 Msa1349570:CDS 40.0%
!! TACTGGTTCCTTACCAATGA+TGG + tig0010967:44288-44307 Msa1349570:CDS 40.0%
CTTTCTCCATCAAATCTTGG+TGG - tig0010967:44521-44540 None:intergenic 40.0%
CACCAAGATTTGATGGAGAA+AGG + tig0010967:44519-44538 Msa1349570:CDS 40.0%
CTCCTTTCTCCATCAAATCT+TGG - tig0010967:44524-44543 None:intergenic 40.0%
! TTGATTTGATCTCCACAGTG+TGG + tig0010967:44818-44837 Msa1349570:intron 40.0%
GTGATCAGTTTCATCCATCA+TGG - tig0010967:45273-45292 None:intergenic 40.0%
! CCCACAAAAACATTCGGTTT+TGG + tig0010967:45305-45324 Msa1349570:intron 40.0%
GTCAAATGCTTCTTCTCTCT+TGG + tig0010967:45623-45642 Msa1349570:intron 40.0%
TCAATATGAGGTGATTCGAG+GGG - tig0010967:45836-45855 None:intergenic 40.0%
GTCAATATGAGGTGATTCGA+GGG - tig0010967:45837-45856 None:intergenic 40.0%
AGTCAATATGAGGTGATTCG+AGG - tig0010967:45838-45857 None:intergenic 40.0%
! ATCAAACGACTTGTAGTGGA+GGG - tig0010967:46330-46349 None:intergenic 40.0%
ATGGATCAAACGACTTGTAG+TGG - tig0010967:46334-46353 None:intergenic 40.0%
CTACAAGTCGTTTGATCCAT+CGG + tig0010967:46334-46353 Msa1349570:three_prime_UTR 40.0%
GAGCGCGAGCAAAATATGTT+GGG - tig0010967:40771-40790 None:intergenic 45.0%
TGAGCGCGAGCAAAATATGT+TGG - tig0010967:40772-40791 None:intergenic 45.0%
GTTCAAGCACAATTCAACGG+TGG + tig0010967:41306-41325 Msa1349570:intron 45.0%
AACCTCAGAGGTTGAAGGTT+CGG + tig0010967:41331-41350 Msa1349570:intron 45.0%
! AGGTTGAAGGTTCGGTATCT+TGG + tig0010967:41339-41358 Msa1349570:intron 45.0%
CAAGGAGGGTGAAATACGTT+CGG + tig0010967:41415-41434 Msa1349570:intron 45.0%
AACGTCCAACATTCGACGAT+AGG + tig0010967:41442-41461 Msa1349570:intron 45.0%
TGCATTCGGGTAGAGATATG+TGG - tig0010967:41985-42004 None:intergenic 45.0%
GACCCATCAATTGTTCCTCA+TGG + tig0010967:42430-42449 Msa1349570:intron 45.0%
GTGCCATGAGGAACAATTGA+TGG - tig0010967:42436-42455 None:intergenic 45.0%
! ACGCCAGGATTTAGGGTTTA+GGG - tig0010967:42556-42575 None:intergenic 45.0%
! TACGCCAGGATTTAGGGTTT+AGG - tig0010967:42557-42576 None:intergenic 45.0%
TTGTTGTAGAAGGGAGAGGA+GGG + tig0010967:42656-42675 Msa1349570:intron 45.0%
AGGGAGGAGAGAATGTTAGA+TGG + tig0010967:42675-42694 Msa1349570:intron 45.0%
GTTAGATGGTGTGAGGGAAA+TGG + tig0010967:42689-42708 Msa1349570:intron 45.0%
TAGATGGTGTGAGGGAAATG+GGG + tig0010967:42691-42710 Msa1349570:intron 45.0%
!! TTTGGAGGGGTATTTATCGG+TGG + tig0010967:42717-42736 Msa1349570:intron 45.0%
!! TTGGAGGGGTATTTATCGGT+GGG + tig0010967:42718-42737 Msa1349570:intron 45.0%
ATCGGTGGGAATGGTAACAT+AGG + tig0010967:42732-42751 Msa1349570:intron 45.0%
!!! AACACACGTTTTTTGGACGG+TGG - tig0010967:42836-42855 None:intergenic 45.0%
TGTTCTTGAGATCAGACCAC+CGG + tig0010967:42852-42871 Msa1349570:intron 45.0%
GTGCACATGCTGTGTTGAAT+TGG + tig0010967:43364-43383 Msa1349570:intron 45.0%
GTGTTAATCTCTGCGTGAGT+TGG - tig0010967:43530-43549 None:intergenic 45.0%
CCTGCATTAGTTAACTCACG+CGG + tig0010967:43571-43590 Msa1349570:intron 45.0%
GCGTTACTTAACTAACGCAG+GGG + tig0010967:43625-43644 Msa1349570:intron 45.0%
TAAGCCCAAATAGAAAGGCC+CGG + tig0010967:43749-43768 Msa1349570:intron 45.0%
TTGCCAATAGTTATGCGAGC+CGG - tig0010967:43771-43790 None:intergenic 45.0%
TTTAGAAGATTGCAGCGCGA+AGG + tig0010967:43827-43846 Msa1349570:intron 45.0%
TTAGAAGATTGCAGCGCGAA+GGG + tig0010967:43828-43847 Msa1349570:intron 45.0%
CAGCACAACAGAAACTTCAG+CGG - tig0010967:43876-43895 None:intergenic 45.0%
CTGCCTCTACATTGCAATCA+TGG + tig0010967:43893-43912 Msa1349570:CDS 45.0%
CACAAGACATACCTTGGAAG+AGG - tig0010967:44052-44071 None:intergenic 45.0%
!! GGGAGTTTGCTATGCAAAGA+AGG + tig0010967:44149-44168 Msa1349570:CDS 45.0%
GTAGCAGGAACAATCTCAGA+TGG - tig0010967:44345-44364 None:intergenic 45.0%
!! TCCTGCTACTTTGAAGAAGC+AGG + tig0010967:44356-44375 Msa1349570:CDS 45.0%
GATGGAGAAAGGAGATTTGG+TGG + tig0010967:44530-44549 Msa1349570:CDS 45.0%
GGTGAATTTGGAGGAGACAA+AGG + tig0010967:44593-44612 Msa1349570:CDS 45.0%
GAATTTGGAGGAGACAAAGG+TGG + tig0010967:44596-44615 Msa1349570:CDS 45.0%
! CTGACTACAGGCCTTCTTTT+GGG + tig0010967:44627-44646 Msa1349570:CDS 45.0%
! TGACTACAGGCCTTCTTTTG+GGG + tig0010967:44628-44647 Msa1349570:CDS 45.0%
!! AAGTTGATAGGGTTGAGCGT+CGG + tig0010967:45226-45245 Msa1349570:intron 45.0%
TCATCCATCATGGCAAGTTC+AGG - tig0010967:45263-45282 None:intergenic 45.0%
! TTTTTGTGGGCAGAATTGGG+CGG - tig0010967:45295-45314 None:intergenic 45.0%
AATACCCAGATTGAGAGAGG+AGG + tig0010967:45580-45599 Msa1349570:intron 45.0%
!! AAATTGAGTGGGGCATTGCT+TGG + tig0010967:45722-45741 Msa1349570:intron 45.0%
GGCATTGCTTGGATAGACAA+AGG + tig0010967:45733-45752 Msa1349570:intron 45.0%
TATTAGCAGTATGTCACGGG+CGG + tig0010967:45771-45790 Msa1349570:intron 45.0%
CAATATGAGGTGATTCGAGG+GGG - tig0010967:45835-45854 None:intergenic 45.0%
! TGCTTCAGCTCATGCAGTTT+TGG + tig0010967:46278-46297 Msa1349570:three_prime_UTR 45.0%
! TCAAACGACTTGTAGTGGAG+GGG - tig0010967:46329-46348 None:intergenic 45.0%
GATCAAACGACTTGTAGTGG+AGG - tig0010967:46331-46350 None:intergenic 45.0%
GACGATAGATCAAGGACTGT+TGG + tig0010967:46448-46467 Msa1349570:three_prime_UTR 45.0%
!!! ATTATAATTTTTTTAGATTT+AGG + tig0010967:41054-41073 Msa1349570:intron 5.0%
!!! TTATAATTTTTTTAGATTTA+GGG + tig0010967:41055-41074 Msa1349570:intron 5.0%
!! ATACTTTAATAATATTAAAA+TGG - tig0010967:45671-45690 None:intergenic 5.0%
! TGCGTTTAAAACGGCACGCA+GGG - tig0010967:40864-40883 None:intergenic 50.0%
! TTGCGTTTAAAACGGCACGC+AGG - tig0010967:40865-40884 None:intergenic 50.0%
TGGAGAACCTCAGAGGTTGA+AGG + tig0010967:41326-41345 Msa1349570:intron 50.0%
TACCGAACCTTCAACCTCTG+AGG - tig0010967:41336-41355 None:intergenic 50.0%
AATTCAACCCCGGAGACACA+AGG + tig0010967:41397-41416 Msa1349570:intron 50.0%
TTTCACCCTCCTTGTGTCTC+CGG - tig0010967:41409-41428 None:intergenic 50.0%
! ACGACGTGACGAGCATGTTT+TGG + tig0010967:41499-41518 Msa1349570:intron 50.0%
! CGACGTGACGAGCATGTTTT+GGG + tig0010967:41500-41519 Msa1349570:intron 50.0%
! GGGAGCACAACATGTTATCG+TGG + tig0010967:41520-41539 Msa1349570:intron 50.0%
TGTCATGAAGCAGTGCCATG+AGG - tig0010967:42448-42467 None:intergenic 50.0%
GTTGTTGTAGAAGGGAGAGG+AGG + tig0010967:42655-42674 Msa1349570:intron 50.0%
GTGAGGGAAATGGGGAAGTT+TGG + tig0010967:42699-42718 Msa1349570:intron 50.0%
AGGGAAATGGGGAAGTTTGG+AGG + tig0010967:42702-42721 Msa1349570:intron 50.0%
GGGAAATGGGGAAGTTTGGA+GGG + tig0010967:42703-42722 Msa1349570:intron 50.0%
GGAAATGGGGAAGTTTGGAG+GGG + tig0010967:42704-42723 Msa1349570:intron 50.0%
! GGGGTATTTATCGGTGGGAA+TGG + tig0010967:42723-42742 Msa1349570:intron 50.0%
GTTAACTCACGCAGGTTAGC+CGG - tig0010967:42874-42893 None:intergenic 50.0%
TTAAGTCACGCACCACTAGC+TGG - tig0010967:42904-42923 None:intergenic 50.0%
TGCGTGACCTAACTCACACA+TGG + tig0010967:42962-42981 Msa1349570:intron 50.0%
GCGTGACCTAACTCACACAT+GGG + tig0010967:42963-42982 Msa1349570:intron 50.0%
! TGGACGCGAGTGTTTTGTGT+TGG + tig0010967:43004-43023 Msa1349570:intron 50.0%
! GGACGCGAGTGTTTTGTGTT+GGG + tig0010967:43005-43024 Msa1349570:intron 50.0%
! GAGCGCGAGCAAAACTTGTT+GGG - tig0010967:43087-43106 None:intergenic 50.0%
TGAGCGCGAGCAAAACTTGT+TGG - tig0010967:43088-43107 None:intergenic 50.0%
AGCGTGAGTTAAGTCACGCA+GGG - tig0010967:43130-43149 None:intergenic 50.0%
TAGCGTGAGTTAAGTCACGC+AGG - tig0010967:43131-43150 None:intergenic 50.0%
GGAGCATGAGTTTACGGTGT+TGG + tig0010967:43186-43205 Msa1349570:intron 50.0%
GCTAACAGTGGCAGAATTGG+CGG - tig0010967:43277-43296 None:intergenic 50.0%
CCTGCTAACAGTGGCAGAAT+TGG - tig0010967:43280-43299 None:intergenic 50.0%
CCAATTCTGCCACTGTTAGC+AGG + tig0010967:43277-43296 Msa1349570:intron 50.0%
!! CATGATGGACCTGCTAACAG+TGG - tig0010967:43289-43308 None:intergenic 50.0%
CTGCATGAGTTAACTCACGC+AGG - tig0010967:43488-43507 None:intergenic 50.0%
CTGCGTGAGTTAACTCATGC+AGG + tig0010967:43486-43505 Msa1349570:intron 50.0%
CCGCGTGAGTTAACTAATGC+AGG - tig0010967:43574-43593 None:intergenic 50.0%
TGGGCGCGAGCAAAATTTGT+TGG + tig0010967:43666-43685 Msa1349570:intron 50.0%
! GGGCGCGAGCAAAATTTGTT+GGG + tig0010967:43667-43686 Msa1349570:intron 50.0%
TGCCAATAGTTATGCGAGCC+GGG - tig0010967:43770-43789 None:intergenic 50.0%
GCCTGCTTCTTCAAAGTAGC+AGG - tig0010967:44360-44379 None:intergenic 50.0%
AATTACCTAGGGCGATCACC+AGG - tig0010967:44414-44433 None:intergenic 50.0%
!! AGATTTGGTGGTGACCGTGA+TGG + tig0010967:44542-44561 Msa1349570:CDS 50.0%
ATTCACCAGCAGGTCCTCTT+GGG - tig0010967:44580-44599 None:intergenic 50.0%
AATTCACCAGCAGGTCCTCT+TGG - tig0010967:44581-44600 None:intergenic 50.0%
AGAGGACCTGCTGGTGAATT+TGG + tig0010967:44581-44600 Msa1349570:CDS 50.0%
TCTCCTCCAAATTCACCAGC+AGG - tig0010967:44590-44609 None:intergenic 50.0%
AAAGAAGGCCTGTAGTCAGC+TGG - tig0010967:44626-44645 None:intergenic 50.0%
! GCTGACTACAGGCCTTCTTT+TGG + tig0010967:44626-44645 Msa1349570:CDS 50.0%
GACGCTCAACCCTATCAACT+TGG - tig0010967:45227-45246 None:intergenic 50.0%
!!! CATTCGGTTTTGGAGGGTCT+CGG + tig0010967:45315-45334 Msa1349570:intron 50.0%
! AGAGAGGAGGCGCAAAACAT+TGG + tig0010967:45593-45612 Msa1349570:intron 50.0%
ATTAGCAGTATGTCACGGGC+GGG + tig0010967:45772-45791 Msa1349570:intron 50.0%
!! GGGTAACGGGTGAAACACAA+AGG - tig0010967:45867-45886 None:intergenic 50.0%
! ACAACAACCGGTTGCTGTTC+AGG - tig0010967:45909-45928 None:intergenic 50.0%
! ACCGGTTGTTGTTCGTGTCA+CGG + tig0010967:45917-45936 Msa1349570:intron 50.0%
! CAAACGACTTGTAGTGGAGG+GGG - tig0010967:46328-46347 None:intergenic 50.0%
TGCGCGAGTTAACTCACGCA+GGG - tig0010967:40814-40833 None:intergenic 55.0%
TCAACGGTGGAGAACCTCAG+AGG + tig0010967:41319-41338 Msa1349570:intron 55.0%
TTCACCCTCCTTGTGTCTCC+GGG - tig0010967:41408-41427 None:intergenic 55.0%
TTGTAGAAGGGAGAGGAGGG+AGG + tig0010967:42659-42678 Msa1349570:intron 55.0%
TTAACTCGCGCACCAGCTAG+TGG + tig0010967:42889-42908 Msa1349570:intron 55.0%
GCTGAGCTATTAGGTGCGTG+AGG + tig0010967:42929-42948 Msa1349570:intron 55.0%
GCGTGAGTTAAGTCACGCAG+GGG - tig0010967:43129-43148 None:intergenic 55.0%
AACAGTGGCAGAATTGGCGG+TGG - tig0010967:43274-43293 None:intergenic 55.0%
CTGCGTGAGTTAACTCACGC+AGG - tig0010967:43518-43537 None:intergenic 55.0%
CGAGCCGGGCCTTTCTATTT+GGG - tig0010967:43756-43775 None:intergenic 55.0%
GCAGCGCGAAGGGATTAGAA+AGG + tig0010967:43838-43857 Msa1349570:intron 55.0%
AAGAAGCAGGCTAAGCCAGC+TGG + tig0010967:44369-44388 Msa1349570:CDS 55.0%
TCACCAGGAGGACCACCAAA+GGG - tig0010967:44399-44418 None:intergenic 55.0%
ATCACCAGGAGGACCACCAA+AGG - tig0010967:44400-44419 None:intergenic 55.0%
AGGGGCCCACCAAGATTTGA+TGG + tig0010967:44512-44531 Msa1349570:intron 55.0%
GGACCTGCTGGTGAATTTGG+AGG + tig0010967:44584-44603 Msa1349570:CDS 55.0%
GACACAAGGGAACCACACTG+TGG - tig0010967:44833-44852 None:intergenic 55.0%
!! TGATAGGGTTGAGCGTCGGA+TGG + tig0010967:45230-45249 Msa1349570:intron 55.0%
!! GATAGGGTTGAGCGTCGGAT+GGG + tig0010967:45231-45250 Msa1349570:intron 55.0%
!!! GTTTTGGAGGGTCTCGGCTA+GGG + tig0010967:45321-45340 Msa1349570:intron 55.0%
TGCGCCTCCTCTCTCAATCT+GGG - tig0010967:45587-45606 None:intergenic 55.0%
TTGCGCCTCCTCTCTCAATC+TGG - tig0010967:45588-45607 None:intergenic 55.0%
GGTCGGATTTCACGGGTAAC+GGG - tig0010967:45880-45899 None:intergenic 55.0%
GGGTCGGATTTCACGGGTAA+CGG - tig0010967:45881-45900 None:intergenic 55.0%
GTGATCGGGTCGGATTTCAC+GGG - tig0010967:45887-45906 None:intergenic 55.0%
GGTGATCGGGTCGGATTTCA+CGG - tig0010967:45888-45907 None:intergenic 55.0%
TGCTGTTCAGGTGATCGGGT+CGG - tig0010967:45897-45916 None:intergenic 55.0%
! CGGTTGCTGTTCAGGTGATC+GGG - tig0010967:45901-45920 None:intergenic 55.0%
! CCGGTTGCTGTTCAGGTGAT+CGG - tig0010967:45902-45921 None:intergenic 55.0%
CCGATCACCTGAACAGCAAC+CGG + tig0010967:45899-45918 Msa1349570:intron 55.0%
CCCGTGACACGAACAACAAC+CGG - tig0010967:45921-45940 None:intergenic 55.0%
! CCGGTTGTTGTTCGTGTCAC+GGG + tig0010967:45918-45937 Msa1349570:intron 55.0%
! TCGTGTCACGGGTTGTTGCT+CGG + tig0010967:45929-45948 Msa1349570:intron 55.0%
TGTTGCTCGGCCCTACAAGT+TGG + tig0010967:45942-45961 Msa1349570:intron 55.0%
GCGCGAGTTAACTCACGCAG+GGG - tig0010967:40813-40832 None:intergenic 60.0%
CTGCGCGAGTTAACTCACGC+AGG - tig0010967:40815-40834 None:intergenic 60.0%
CTGCGTGAGTTAACTCGCGC+AGG + tig0010967:40813-40832 Msa1349570:intron 60.0%
GGCACGCAGGGTGAGTTAAG+TGG - tig0010967:40852-40871 None:intergenic 60.0%
TCAACCCCGGAGACACAAGG+AGG + tig0010967:41400-41419 Msa1349570:intron 60.0%
CAACCCCGGAGACACAAGGA+GGG + tig0010967:41401-41420 Msa1349570:intron 60.0%
TCACCCTCCTTGTGTCTCCG+GGG - tig0010967:41407-41426 None:intergenic 60.0%
! AACTCACGCAGGTTAGCCGG+TGG - tig0010967:42871-42890 None:intergenic 60.0%
GTGCGCGAGTTAACTCACGC+AGG - tig0010967:42882-42901 None:intergenic 60.0%
GTGGCAGAATTGGCGGTGGA+AGG - tig0010967:43270-43289 None:intergenic 60.0%
GCGAGCCGGGCCTTTCTATT+TGG - tig0010967:43757-43776 None:intergenic 60.0%
! GGCCCGGCTCGCATAACTAT+TGG + tig0010967:43765-43784 Msa1349570:intron 60.0%
AGCAGGCTAAGCCAGCTGGA+AGG + tig0010967:44373-44392 Msa1349570:CDS 60.0%
AAGCCAGCTGGAAGGCCCTT+TGG + tig0010967:44381-44400 Msa1349570:CDS 60.0%
TACCTAGGGCGATCACCAGG+AGG - tig0010967:44411-44430 None:intergenic 60.0%
!! GGTGACCGTGATGGATACCG+TGG + tig0010967:44551-44570 Msa1349570:CDS 60.0%
!! GACCGTGATGGATACCGTGG+AGG + tig0010967:44554-44573 Msa1349570:CDS 60.0%
GGCCTCCACGGTATCCATCA+CGG - tig0010967:44559-44578 None:intergenic 60.0%
GTGGAGCTCCAGCTGACTAC+AGG + tig0010967:44615-44634 Msa1349570:CDS 60.0%
!! GGTTGAGCGTCGGATGGGTT+CGG + tig0010967:45236-45255 Msa1349570:intron 60.0%
!! GTTGAGCGTCGGATGGGTTC+GGG + tig0010967:45237-45256 Msa1349570:intron 60.0%
CGGGCCTGAACTTGCCATGA+TGG + tig0010967:45256-45275 Msa1349570:intron 60.0%
!!! GGTTTTGGAGGGTCTCGGCT+AGG + tig0010967:45320-45339 Msa1349570:intron 60.0%
CTGACTCTATTGCAGGGCCC+TGG + tig0010967:46133-46152 Msa1349570:intron 60.0%
ACTCTATTGCAGGGCCCTGG+TGG + tig0010967:46136-46155 Msa1349570:intron 60.0%
CGAAGCCAGGTCTACCACCA+GGG - tig0010967:46153-46172 None:intergenic 60.0%
CCTGGTGGTAGACCTGGCTT+CGG + tig0010967:46151-46170 Msa1349570:CDS 60.0%
!! GGTCGTGGTTCTGGTGGCTT+TGG + tig0010967:46172-46191 Msa1349570:CDS 60.0%
CCACCAAAGGGCCTTCCAGC+TGG - tig0010967:44387-44406 None:intergenic 65.0%
CCAGCTGGAAGGCCCTTTGG+TGG + tig0010967:44384-44403 Msa1349570:CDS 65.0%
! AGGCCCTTTGGTGGTCCTCC+TGG + tig0010967:44393-44412 Msa1349570:CDS 65.0%
GTCCTCCTGGTGATCGCCCT+AGG + tig0010967:44406-44425 Msa1349570:CDS 65.0%
GGATACCGTGGAGGCCCAAG+AGG + tig0010967:44563-44582 Msa1349570:CDS 65.0%
CAGGTCCTCTTGGGCCTCCA+CGG - tig0010967:44571-44590 None:intergenic 65.0%
CCGAAGCCAGGTCTACCACC+AGG - tig0010967:46154-46173 None:intergenic 65.0%
GGTAGACCTGGCTTCGGTCG+TGG + tig0010967:46157-46176 Msa1349570:CDS 65.0%
CCAGAACCACGACCGAAGCC+AGG - tig0010967:46166-46185 None:intergenic 65.0%
CCTGGCTTCGGTCGTGGTTC+TGG + tig0010967:46163-46182 Msa1349570:CDS 65.0%
!! GGCTTCGGTCGTGGTTCTGG+TGG + tig0010967:46166-46185 Msa1349570:CDS 65.0%
GGAGGCCCAAGAGGACCTGC+TGG + tig0010967:44572-44591 Msa1349570:CDS 70.0%
TGGAGGGTCTCGGCTAGGGC+TGG + tig0010967:45325-45344 Msa1349570:intron 70.0%
GGAGGGTCTCGGCTAGGGCT+GGG + tig0010967:45326-45345 Msa1349570:intron 70.0%
! TAGGGCTGGGCGGGTGGGTT+GGG + tig0010967:45339-45358 Msa1349570:intron 70.0%
CGGGCGGGTGTGTCCACAAC+TGG + tig0010967:45787-45806 Msa1349570:intron 70.0%
CAGGGCCCTGGTGGTAGACC+TGG + tig0010967:46145-46164 Msa1349570:intron 70.0%
GGGTCTCGGCTAGGGCTGGG+CGG + tig0010967:45329-45348 Msa1349570:intron 75.0%
GGTCTCGGCTAGGGCTGGGC+GGG + tig0010967:45330-45349 Msa1349570:intron 75.0%
TCGGCTAGGGCTGGGCGGGT+GGG + tig0010967:45334-45353 Msa1349570:intron 75.0%
CTAGGGCTGGGCGGGTGGGT+TGG + tig0010967:45338-45357 Msa1349570:intron 75.0%
! CTCGGCTAGGGCTGGGCGGG+TGG + tig0010967:45333-45352 Msa1349570:intron 80.0%
Chromosome Type Strat End Strand Name
tig0010967 gene 40546 46615 40546 ID=Msa1349570;Name=Msa1349570
tig0010967 mRNA 40546 46615 40546 ID=Msa1349570-mRNA-1;Parent=Msa1349570;Name=Msa1349570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.71|0.5|0.87|0.85|0.75|8|351|200
tig0010967 exon 40546 40553 40546 ID=Msa1349570-mRNA-1:exon:7026;Parent=Msa1349570-mRNA-1
tig0010967 exon 43842 43914 43842 ID=Msa1349570-mRNA-1:exon:7027;Parent=Msa1349570-mRNA-1
tig0010967 exon 44011 44059 44011 ID=Msa1349570-mRNA-1:exon:7028;Parent=Msa1349570-mRNA-1
tig0010967 exon 44148 44218 44148 ID=Msa1349570-mRNA-1:exon:7029;Parent=Msa1349570-mRNA-1
tig0010967 exon 44237 44427 44237 ID=Msa1349570-mRNA-1:exon:7030;Parent=Msa1349570-mRNA-1
tig0010967 exon 44514 44649 44514 ID=Msa1349570-mRNA-1:exon:7031;Parent=Msa1349570-mRNA-1
tig0010967 exon 46148 46224 46148 ID=Msa1349570-mRNA-1:exon:7032;Parent=Msa1349570-mRNA-1
tig0010967 exon 46267 46615 46267 ID=Msa1349570-mRNA-1:exon:7033;Parent=Msa1349570-mRNA-1
tig0010967 CDS 40546 40553 40546 ID=Msa1349570-mRNA-1:cds;Parent=Msa1349570-mRNA-1
tig0010967 CDS 43842 43914 43842 ID=Msa1349570-mRNA-1:cds;Parent=Msa1349570-mRNA-1
tig0010967 CDS 44011 44059 44011 ID=Msa1349570-mRNA-1:cds;Parent=Msa1349570-mRNA-1
tig0010967 CDS 44148 44218 44148 ID=Msa1349570-mRNA-1:cds;Parent=Msa1349570-mRNA-1
tig0010967 CDS 44237 44427 44237 ID=Msa1349570-mRNA-1:cds;Parent=Msa1349570-mRNA-1
tig0010967 CDS 44514 44649 44514 ID=Msa1349570-mRNA-1:cds;Parent=Msa1349570-mRNA-1
tig0010967 CDS 46148 46222 46148 ID=Msa1349570-mRNA-1:cds;Parent=Msa1349570-mRNA-1
tig0010967 three_prime_UTR 46223 46224 46223 ID=Msa1349570-mRNA-1:three_prime_utr;Parent=Msa1349570-mRNA-1
tig0010967 three_prime_UTR 46267 46615 46267 ID=Msa1349570-mRNA-1:three_prime_utr;Parent=Msa1349570-mRNA-1
Gene Sequence

>Msa1349570

ATGTTTCGCGCGAAGGGATTAGAAAGGAGTGTTCGTTCGCCGCTGAAGTTTCTGTTGTGCTGCCTCTACATTGCAATCATGATCATTACTGAGAAAAACCGTAGAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCAAAGAAGGATTTCAATTTGGCTAAGCACCCAGAAATCGATGTGCCAAATCTGCAAAGCTTCAAATCTAGGGAATATGTGAGGGAAACTTTTGCTTGGATGAACTATTACTGGTTCCTTACCAATGATGGAATTGAGTTTCTCAGGACTTATTTGAATCTTCCATCTGAGATTGTTCCTGCTACTTTGAAGAAGCAGGCTAAGCCAGCTGGAAGGCCCTTTGGTGGTCCTCCTGGTGATCGCCCTAGGGGCCCACCAAGATTTGATGGAGAAAGGAGATTTGGTGGTGACCGTGATGGATACCGTGGAGGCCCAAGAGGACCTGCTGGTGAATTTGGAGGAGACAAAGGTGGAGCTCCAGCTGACTACAGGCCTTCTTTTGGGGGCCCTGGTGGTAGACCTGGCTTCGGTCGTGGTTCTGGTGGCTTTGGAGCACCAACTAGTTCAAACGATGCTTAA

Protein sequence

>Msa1349570

MFRAKGLERSVRSPLKFLLCCLYIAIMIITEKNRREICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQSFKSREYVRETFAWMNYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGSGGFGAPTSSNDA*