AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0806880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806880 MtrunA17_Chr5g0421491 96.460 113 4 0 1 113 1 113 6.20e-71 207
Msa0806880 MtrunA17_Chr2g0321121 89.381 113 12 0 1 113 1 113 9.65e-46 143
Msa0806880 MtrunA17_Chr1g0179001 73.451 113 29 1 1 113 1 112 3.51e-28 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806880 AT2G27710.4 77.143 70 16 0 1 70 1 70 3.65e-32 108
Msa0806880 AT3G44590.1 65.487 113 37 2 1 113 1 111 7.91e-31 106
Msa0806880 AT3G44590.2 65.487 113 37 2 1 113 1 111 7.91e-31 106
Msa0806880 AT2G27720.1 66.087 115 37 1 1 113 1 115 4.88e-28 99.4
Msa0806880 AT2G27710.1 75.385 65 16 0 1 65 1 65 1.78e-25 92.8
Msa0806880 AT2G27710.2 75.385 65 16 0 1 65 1 65 1.78e-25 92.8
Msa0806880 AT2G27710.3 75.385 65 16 0 1 65 1 65 1.78e-25 92.8
Msa0806880 AT2G27720.3 59.843 127 37 2 1 113 1 127 1.89e-24 90.5
Msa0806880 AT3G28500.1 55.556 117 46 4 1 113 1 115 3.73e-24 89.4
Msa0806880 AT2G27720.2 57.692 130 38 2 1 113 1 130 3.11e-23 87.4
Msa0806880 AT2G27720.4 66.667 87 27 1 29 113 5 91 2.57e-14 63.5
Msa0806880 AT5G40040.1 57.018 114 48 1 1 113 1 114 9.12e-14 62.8

Find 48 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTATTTGTTGGCTGTTT+TGG 0.077686 5_3:+27393030 Msa0806880:CDS
TCAACTAATTTATATGATTA+GGG 0.288176 5_3:-27392837 None:intergenic
TCCTCCTTTGCTTCGGCAGC+TGG 0.312544 5_3:-27393776 None:intergenic
AAAATAAATTAACCAATAGT+AGG 0.326036 5_3:-27394100 None:intergenic
GTCAACTAATTTATATGATT+AGG 0.326658 5_3:-27392838 None:intergenic
TATTTCAACTAAACTCTAAC+AGG 0.328700 5_3:-27393987 None:intergenic
ACGCACTTGGCTGGTTAGAT+TGG 0.338544 5_3:-27392922 None:intergenic
TTTCTGCATTACATTGTTGC+TGG 0.354590 5_3:+27394120 Msa0806880:three_prime_UTR
AAAGTGTTTGACCCTACTAT+TGG 0.358905 5_3:+27394088 Msa0806880:three_prime_UTR
GCTGTGGCTGTTGCTGCTTC+CGG 0.372107 5_3:+27393728 Msa0806880:CDS
GGAAAAGAAGGTTGAAGAAA+AGG 0.373370 5_3:+27393796 Msa0806880:CDS
CGCACTTGGCTGGTTAGATT+GGG 0.377739 5_3:-27392921 None:intergenic
GATCATCGCAGCTTATTTGT+TGG 0.413285 5_3:+27393021 Msa0806880:CDS
TGGAAACACAGAAAAGATAA+AGG 0.423221 5_3:+27392792 Msa0806880:five_prime_UTR
GCTGTTGCTGCTTCCGGTGG+AGG 0.434566 5_3:+27393734 Msa0806880:CDS
ATTCTTATAAACGCGACATC+AGG 0.454905 5_3:+27394166 Msa0806880:three_prime_UTR
TGCTAGTGGCAGAGAGAAGT+TGG 0.462166 5_3:+27393682 Msa0806880:CDS
ACTTCTAACTGTCTAATGTA+AGG 0.467863 5_3:-27394205 None:intergenic
AGCAGCTGCAGCACCTCCAC+CGG 0.469171 5_3:-27393747 None:intergenic
CAACTCAACATTTGAGTCCT+CGG 0.476762 5_3:-27393618 None:intergenic
TAATCATATAAATTAGTTGA+CGG 0.485864 5_3:+27392840 Msa0806880:five_prime_UTR
ATCAAAACCATCCTCGCCTC+AGG 0.486163 5_3:+27393082 Msa0806880:CDS
TGCACCAGCTGCCGAAGCAA+AGG 0.494374 5_3:+27393772 Msa0806880:CDS
AAGTTGGCTTCAGTGCCATC+TGG 0.501913 5_3:+27393698 Msa0806880:CDS
GGGATTTAGCTTGTTCGACT+AGG 0.506077 5_3:+27393929 Msa0806880:CDS
GCCATCTGGTGGAGGTGCTG+TGG 0.508789 5_3:+27393712 Msa0806880:CDS
TTTGATATCATCAGCGGAAG+GGG 0.519904 5_3:-27393065 None:intergenic
AACAAAGAAACTTACATCAT+CGG 0.541190 5_3:-27393825 None:intergenic
GCTTCAGTGCCATCTGGTGG+AGG 0.543882 5_3:+27393704 Msa0806880:CDS
CGAAGCAAAGGAGGAAAAGA+AGG 0.550592 5_3:+27393784 Msa0806880:CDS
GTAAGAACCTGAGGCGAGGA+TGG 0.551127 5_3:-27393089 None:intergenic
TTGGCTTCAGTGCCATCTGG+TGG 0.551596 5_3:+27393701 Msa0806880:CDS
GTGGCTGTTGCTGCTTCCGG+TGG 0.555914 5_3:+27393731 Msa0806880:CDS
AAATAAATTAACCAATAGTA+GGG 0.556583 5_3:-27394099 None:intergenic
TTTGAGTGAAGTCAAGGGCA+AGG 0.559487 5_3:+27393643 Msa0806880:CDS
GTGAAGGTGAAGCTCTGAAA+CGG 0.559557 5_3:-27392865 None:intergenic
ATTTAGCTTGTTCGACTAGG+TGG 0.566929 5_3:+27393932 Msa0806880:exon
CTTATAAACGCGACATCAGG+AGG 0.573200 5_3:+27394169 Msa0806880:three_prime_UTR
GCAATGTGTTGCAATTGAAA+AGG 0.578024 5_3:-27394056 None:intergenic
ACCAGCTGCCGAAGCAAAGG+AGG 0.585812 5_3:+27393775 Msa0806880:CDS
GCGACCGCGATGTATGTTGA+AGG 0.590529 5_3:-27392887 None:intergenic
GCCACAGCACCTCCACCAGA+TGG 0.592642 5_3:-27393713 None:intergenic
TCTGCCACTAGCAATTAGCT+CGG 0.640840 5_3:-27393672 None:intergenic
TTTGCCGAGCTAATTGCTAG+TGG 0.651963 5_3:+27393668 Msa0806880:CDS
AGAGGTAAGAACCTGAGGCG+AGG 0.656993 5_3:-27393093 None:intergenic
TATAGTTGGAGTTGAAGCCG+AGG 0.682665 5_3:+27393601 Msa0806880:intron
GCGATGTATGTTGAAGGTGA+AGG 0.708805 5_3:-27392881 None:intergenic
TTCACCTTCAACATACATCG+CGG 0.762337 5_3:+27392883 Msa0806880:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGGTATAAAAATGAA+GGG + chr5_3:27392750-27392769 Msa0806880:five_prime_UTR 15.0%
!! TCAACTAATTTATATGATTA+GGG - chr5_3:27392840-27392859 None:intergenic 15.0%
!! TAATCATATAAATTAGTTGA+CGG + chr5_3:27392840-27392859 Msa0806880:five_prime_UTR 15.0%
!!! TTCTTTGTTATTTTTATAGT+TGG + chr5_3:27393587-27393606 Msa0806880:intron 15.0%
!! AAATAAATTAACCAATAGTA+GGG - chr5_3:27394102-27394121 None:intergenic 15.0%
!! AAAATAAATTAACCAATAGT+AGG - chr5_3:27394103-27394122 None:intergenic 15.0%
!! AAAAATGGTATAAAAATGAA+GGG + chr5_3:27392750-27392769 Msa0806880:five_prime_UTR 15.0%
!! TCAACTAATTTATATGATTA+GGG - chr5_3:27392840-27392859 None:intergenic 15.0%
!! TAATCATATAAATTAGTTGA+CGG + chr5_3:27392840-27392859 Msa0806880:five_prime_UTR 15.0%
!!! TTCTTTGTTATTTTTATAGT+TGG + chr5_3:27393587-27393606 Msa0806880:intron 15.0%
!! AAATAAATTAACCAATAGTA+GGG - chr5_3:27394102-27394121 None:intergenic 15.0%
!! AAAATAAATTAACCAATAGT+AGG - chr5_3:27394103-27394122 None:intergenic 15.0%
!! CAAAAATGGTATAAAAATGA+AGG + chr5_3:27392749-27392768 Msa0806880:five_prime_UTR 20.0%
!!! TTTATATGATTAGGGTTTTT+GGG - chr5_3:27392832-27392851 None:intergenic 20.0%
!!! ATTTATATGATTAGGGTTTT+TGG - chr5_3:27392833-27392852 None:intergenic 20.0%
!! GTCAACTAATTTATATGATT+AGG - chr5_3:27392841-27392860 None:intergenic 20.0%
!! TTGATTGTAATTGAATATAG+TGG + chr5_3:27393247-27393266 Msa0806880:intron 20.0%
!!! TTTCTACATTGAATTGTTTT+CGG + chr5_3:27393363-27393382 Msa0806880:intron 20.0%
!! ATCAAAATTCAATGTTTATC+AGG - chr5_3:27393439-27393458 None:intergenic 20.0%
!!! AGTTACAAATTAGTTTTTGT+GGG + chr5_3:27394028-27394047 Msa0806880:three_prime_UTR 20.0%
!!! ATAGATTTGAAGTTTTAATG+TGG + chr5_3:27394229-27394248 Msa0806880:three_prime_UTR 20.0%
!! CAAAAATGGTATAAAAATGA+AGG + chr5_3:27392749-27392768 Msa0806880:five_prime_UTR 20.0%
!!! TTTATATGATTAGGGTTTTT+GGG - chr5_3:27392832-27392851 None:intergenic 20.0%
!!! ATTTATATGATTAGGGTTTT+TGG - chr5_3:27392833-27392852 None:intergenic 20.0%
!! GTCAACTAATTTATATGATT+AGG - chr5_3:27392841-27392860 None:intergenic 20.0%
!! TTGATTGTAATTGAATATAG+TGG + chr5_3:27393247-27393266 Msa0806880:intron 20.0%
!!! TTTCTACATTGAATTGTTTT+CGG + chr5_3:27393363-27393382 Msa0806880:intron 20.0%
!! ATCAAAATTCAATGTTTATC+AGG - chr5_3:27393439-27393458 None:intergenic 20.0%
!!! AGTTACAAATTAGTTTTTGT+GGG + chr5_3:27394028-27394047 Msa0806880:three_prime_UTR 20.0%
! AAACATAACCAAAAAAAGAG+AGG - chr5_3:27393114-27393133 None:intergenic 25.0%
! GTTATGTAGTTGAATGAATT+AGG + chr5_3:27393223-27393242 Msa0806880:intron 25.0%
! AAACAAAAAATTGCAAAGAG+TGG - chr5_3:27393283-27393302 None:intergenic 25.0%
! GCTTCAATAATCAAAATCTA+CGG - chr5_3:27393417-27393436 None:intergenic 25.0%
!! ATCCTTGACAAATCAATTTT+TGG + chr5_3:27393461-27393480 Msa0806880:intron 25.0%
! AACAAAGAAACTTACATCAT+CGG - chr5_3:27393828-27393847 None:intergenic 25.0%
! TATTTCAACTAAACTCTAAC+AGG - chr5_3:27393990-27394009 None:intergenic 25.0%
!!! GAGTTACAAATTAGTTTTTG+TGG + chr5_3:27394027-27394046 Msa0806880:three_prime_UTR 25.0%
! AAACATAACCAAAAAAAGAG+AGG - chr5_3:27393114-27393133 None:intergenic 25.0%
! GTTATGTAGTTGAATGAATT+AGG + chr5_3:27393223-27393242 Msa0806880:intron 25.0%
! AAACAAAAAATTGCAAAGAG+TGG - chr5_3:27393283-27393302 None:intergenic 25.0%
! GCTTCAATAATCAAAATCTA+CGG - chr5_3:27393417-27393436 None:intergenic 25.0%
!! ATCCTTGACAAATCAATTTT+TGG + chr5_3:27393461-27393480 Msa0806880:intron 25.0%
! AACAAAGAAACTTACATCAT+CGG - chr5_3:27393828-27393847 None:intergenic 25.0%
! TATTTCAACTAAACTCTAAC+AGG - chr5_3:27393990-27394009 None:intergenic 25.0%
!!! GAGTTACAAATTAGTTTTTG+TGG + chr5_3:27394027-27394046 Msa0806880:three_prime_UTR 25.0%
AAAATGAAGGGCAAAAAACA+AGG + chr5_3:27392762-27392781 Msa0806880:five_prime_UTR 30.0%
AAATGAAGGGCAAAAAACAA+GGG + chr5_3:27392763-27392782 Msa0806880:five_prime_UTR 30.0%
TGGAAACACAGAAAAGATAA+AGG + chr5_3:27392792-27392811 Msa0806880:five_prime_UTR 30.0%
!! GACCAAAAATTGATTTGTCA+AGG - chr5_3:27393466-27393485 None:intergenic 30.0%
! AGGTGGTTTATTGTTCTTTT+TGG + chr5_3:27393949-27393968 Msa0806880:exon 30.0%
ACTTCTAACTGTCTAATGTA+AGG - chr5_3:27394208-27394227 None:intergenic 30.0%
AAAATGAAGGGCAAAAAACA+AGG + chr5_3:27392762-27392781 Msa0806880:five_prime_UTR 30.0%
AAATGAAGGGCAAAAAACAA+GGG + chr5_3:27392763-27392782 Msa0806880:five_prime_UTR 30.0%
TGGAAACACAGAAAAGATAA+AGG + chr5_3:27392792-27392811 Msa0806880:five_prime_UTR 30.0%
!! GACCAAAAATTGATTTGTCA+AGG - chr5_3:27393466-27393485 None:intergenic 30.0%
! AGGTGGTTTATTGTTCTTTT+TGG + chr5_3:27393949-27393968 Msa0806880:exon 30.0%
ACTTCTAACTGTCTAATGTA+AGG - chr5_3:27394208-27394227 None:intergenic 30.0%
!! GCAAAAAACAAGGGTATTTC+TGG + chr5_3:27392772-27392791 Msa0806880:five_prime_UTR 35.0%
GAATGAAAAACATACGCACT+TGG - chr5_3:27392938-27392957 None:intergenic 35.0%
!! AGCTTATTTGTTGGCTGTTT+TGG + chr5_3:27393030-27393049 Msa0806880:CDS 35.0%
!! GCTTATTTGTTGGCTGTTTT+GGG + chr5_3:27393031-27393050 Msa0806880:CDS 35.0%
! TTTTGATATCATCAGCGGAA+GGG - chr5_3:27393069-27393088 None:intergenic 35.0%
!!! GATGGTTTTGATATCATCAG+CGG - chr5_3:27393074-27393093 None:intergenic 35.0%
!!! GGTTCTTACCTCTCTTTTTT+TGG + chr5_3:27393103-27393122 Msa0806880:intron 35.0%
!! TTGCTTTTGAGTGAAGTCAA+GGG + chr5_3:27393638-27393657 Msa0806880:CDS 35.0%
GGAAAAGAAGGTTGAAGAAA+AGG + chr5_3:27393796-27393815 Msa0806880:CDS 35.0%
!!! CATTGTCATCTTTGTTTTGC+AGG + chr5_3:27393902-27393921 Msa0806880:intron 35.0%
!!! ATCTTTGTTTTGCAGGACAT+GGG + chr5_3:27393909-27393928 Msa0806880:intron 35.0%
GCAATGTGTTGCAATTGAAA+AGG - chr5_3:27394059-27394078 None:intergenic 35.0%
! AAAGTGTTTGACCCTACTAT+TGG + chr5_3:27394088-27394107 Msa0806880:three_prime_UTR 35.0%
TTTCTGCATTACATTGTTGC+TGG + chr5_3:27394120-27394139 Msa0806880:three_prime_UTR 35.0%
ATTCTTATAAACGCGACATC+AGG + chr5_3:27394166-27394185 Msa0806880:three_prime_UTR 35.0%
!! GCAAAAAACAAGGGTATTTC+TGG + chr5_3:27392772-27392791 Msa0806880:five_prime_UTR 35.0%
GAATGAAAAACATACGCACT+TGG - chr5_3:27392938-27392957 None:intergenic 35.0%
!! AGCTTATTTGTTGGCTGTTT+TGG + chr5_3:27393030-27393049 Msa0806880:CDS 35.0%
!! GCTTATTTGTTGGCTGTTTT+GGG + chr5_3:27393031-27393050 Msa0806880:CDS 35.0%
! TTTTGATATCATCAGCGGAA+GGG - chr5_3:27393069-27393088 None:intergenic 35.0%
!!! GATGGTTTTGATATCATCAG+CGG - chr5_3:27393074-27393093 None:intergenic 35.0%
!!! GGTTCTTACCTCTCTTTTTT+TGG + chr5_3:27393103-27393122 Msa0806880:intron 35.0%
!! TTGCTTTTGAGTGAAGTCAA+GGG + chr5_3:27393638-27393657 Msa0806880:CDS 35.0%
GGAAAAGAAGGTTGAAGAAA+AGG + chr5_3:27393796-27393815 Msa0806880:CDS 35.0%
!!! CATTGTCATCTTTGTTTTGC+AGG + chr5_3:27393902-27393921 Msa0806880:intron 35.0%
!!! ATCTTTGTTTTGCAGGACAT+GGG + chr5_3:27393909-27393928 Msa0806880:intron 35.0%
GCAATGTGTTGCAATTGAAA+AGG - chr5_3:27394059-27394078 None:intergenic 35.0%
! AAAGTGTTTGACCCTACTAT+TGG + chr5_3:27394088-27394107 Msa0806880:three_prime_UTR 35.0%
TTTCTGCATTACATTGTTGC+TGG + chr5_3:27394120-27394139 Msa0806880:three_prime_UTR 35.0%
ATTCTTATAAACGCGACATC+AGG + chr5_3:27394166-27394185 Msa0806880:three_prime_UTR 35.0%
!! ATTAGGGTTTTTGGGAGCTT+GGG - chr5_3:27392824-27392843 None:intergenic 40.0%
TTCACCTTCAACATACATCG+CGG + chr5_3:27392883-27392902 Msa0806880:five_prime_UTR 40.0%
CAACACGAATCAACAACGTA+CGG - chr5_3:27392972-27392991 None:intergenic 40.0%
GATCATCGCAGCTTATTTGT+TGG + chr5_3:27393021-27393040 Msa0806880:CDS 40.0%
!! TATTTGTTGGCTGTTTTGGG+CGG + chr5_3:27393034-27393053 Msa0806880:CDS 40.0%
TTTGATATCATCAGCGGAAG+GGG - chr5_3:27393068-27393087 None:intergenic 40.0%
!! GTTTTGATATCATCAGCGGA+AGG - chr5_3:27393070-27393089 None:intergenic 40.0%
AAAAGAGAGGTAAGAACCTG+AGG - chr5_3:27393101-27393120 None:intergenic 40.0%
CAACTCAACATTTGAGTCCT+CGG - chr5_3:27393621-27393640 None:intergenic 40.0%
!!! GTTGCTTTTGAGTGAAGTCA+AGG + chr5_3:27393637-27393656 Msa0806880:CDS 40.0%
! CTTCTTTTCCTCCTTTGCTT+CGG - chr5_3:27393786-27393805 None:intergenic 40.0%
!!! CATCTTTGTTTTGCAGGACA+TGG + chr5_3:27393908-27393927 Msa0806880:intron 40.0%
!! ATTTAGCTTGTTCGACTAGG+TGG + chr5_3:27393932-27393951 Msa0806880:exon 40.0%
!! ATTAGGGTTTTTGGGAGCTT+GGG - chr5_3:27392824-27392843 None:intergenic 40.0%
TTCACCTTCAACATACATCG+CGG + chr5_3:27392883-27392902 Msa0806880:five_prime_UTR 40.0%
CAACACGAATCAACAACGTA+CGG - chr5_3:27392972-27392991 None:intergenic 40.0%
GATCATCGCAGCTTATTTGT+TGG + chr5_3:27393021-27393040 Msa0806880:CDS 40.0%
!! TATTTGTTGGCTGTTTTGGG+CGG + chr5_3:27393034-27393053 Msa0806880:CDS 40.0%
TTTGATATCATCAGCGGAAG+GGG - chr5_3:27393068-27393087 None:intergenic 40.0%
!! GTTTTGATATCATCAGCGGA+AGG - chr5_3:27393070-27393089 None:intergenic 40.0%
AAAAGAGAGGTAAGAACCTG+AGG - chr5_3:27393101-27393120 None:intergenic 40.0%
CAACTCAACATTTGAGTCCT+CGG - chr5_3:27393621-27393640 None:intergenic 40.0%
!!! GTTGCTTTTGAGTGAAGTCA+AGG + chr5_3:27393637-27393656 Msa0806880:CDS 40.0%
! CTTCTTTTCCTCCTTTGCTT+CGG - chr5_3:27393786-27393805 None:intergenic 40.0%
!!! CATCTTTGTTTTGCAGGACA+TGG + chr5_3:27393908-27393927 Msa0806880:intron 40.0%
!! ATTTAGCTTGTTCGACTAGG+TGG + chr5_3:27393932-27393951 Msa0806880:exon 40.0%
!! GATTAGGGTTTTTGGGAGCT+TGG - chr5_3:27392825-27392844 None:intergenic 45.0%
!! GTGAAGGTGAAGCTCTGAAA+CGG - chr5_3:27392868-27392887 None:intergenic 45.0%
GCGATGTATGTTGAAGGTGA+AGG - chr5_3:27392884-27392903 None:intergenic 45.0%
GAAAAACATACGCACTTGGC+TGG - chr5_3:27392934-27392953 None:intergenic 45.0%
! GCTTTAGCTCACTTCTTCAG+AGG - chr5_3:27393495-27393514 None:intergenic 45.0%
TATAGTTGGAGTTGAAGCCG+AGG + chr5_3:27393601-27393620 Msa0806880:intron 45.0%
TTTGAGTGAAGTCAAGGGCA+AGG + chr5_3:27393643-27393662 Msa0806880:CDS 45.0%
TTTGCCGAGCTAATTGCTAG+TGG + chr5_3:27393668-27393687 Msa0806880:CDS 45.0%
TCTGCCACTAGCAATTAGCT+CGG - chr5_3:27393675-27393694 None:intergenic 45.0%
CGAAGCAAAGGAGGAAAAGA+AGG + chr5_3:27393784-27393803 Msa0806880:CDS 45.0%
!! GGGATTTAGCTTGTTCGACT+AGG + chr5_3:27393929-27393948 Msa0806880:CDS 45.0%
CTTATAAACGCGACATCAGG+AGG + chr5_3:27394169-27394188 Msa0806880:three_prime_UTR 45.0%
!! GATTAGGGTTTTTGGGAGCT+TGG - chr5_3:27392825-27392844 None:intergenic 45.0%
!! GTGAAGGTGAAGCTCTGAAA+CGG - chr5_3:27392868-27392887 None:intergenic 45.0%
GCGATGTATGTTGAAGGTGA+AGG - chr5_3:27392884-27392903 None:intergenic 45.0%
GAAAAACATACGCACTTGGC+TGG - chr5_3:27392934-27392953 None:intergenic 45.0%
! GCTTTAGCTCACTTCTTCAG+AGG - chr5_3:27393495-27393514 None:intergenic 45.0%
TATAGTTGGAGTTGAAGCCG+AGG + chr5_3:27393601-27393620 Msa0806880:intron 45.0%
TTTGAGTGAAGTCAAGGGCA+AGG + chr5_3:27393643-27393662 Msa0806880:CDS 45.0%
TTTGCCGAGCTAATTGCTAG+TGG + chr5_3:27393668-27393687 Msa0806880:CDS 45.0%
TCTGCCACTAGCAATTAGCT+CGG - chr5_3:27393675-27393694 None:intergenic 45.0%
CGAAGCAAAGGAGGAAAAGA+AGG + chr5_3:27393784-27393803 Msa0806880:CDS 45.0%
!! GGGATTTAGCTTGTTCGACT+AGG + chr5_3:27393929-27393948 Msa0806880:CDS 45.0%
CTTATAAACGCGACATCAGG+AGG + chr5_3:27394169-27394188 Msa0806880:three_prime_UTR 45.0%
!!! TTATTTTTTTAAAACAAAAA+TGG + chr5_3:27392735-27392754 Msa0806880:five_prime_UTR 5.0%
!!! TTATTTTTTTAAAACAAAAA+TGG + chr5_3:27392735-27392754 Msa0806880:five_prime_UTR 5.0%
!! GTTTTTGGGAGCTTGGGTCT+GGG - chr5_3:27392818-27392837 None:intergenic 50.0%
! CGCACTTGGCTGGTTAGATT+GGG - chr5_3:27392924-27392943 None:intergenic 50.0%
! ACGCACTTGGCTGGTTAGAT+TGG - chr5_3:27392925-27392944 None:intergenic 50.0%
ATCAAAACCATCCTCGCCTC+AGG + chr5_3:27393082-27393101 Msa0806880:CDS 50.0%
!!! GTTTTCGGTGTCGATTTGCC+TGG + chr5_3:27393378-27393397 Msa0806880:intron 50.0%
!! GGTGTCGATTTGCCTGGTAT+CGG + chr5_3:27393384-27393403 Msa0806880:intron 50.0%
TGCTAGTGGCAGAGAGAAGT+TGG + chr5_3:27393682-27393701 Msa0806880:CDS 50.0%
! AAGTTGGCTTCAGTGCCATC+TGG + chr5_3:27393698-27393717 Msa0806880:CDS 50.0%
!! GTTTTTGGGAGCTTGGGTCT+GGG - chr5_3:27392818-27392837 None:intergenic 50.0%
! CGCACTTGGCTGGTTAGATT+GGG - chr5_3:27392924-27392943 None:intergenic 50.0%
! ACGCACTTGGCTGGTTAGAT+TGG - chr5_3:27392925-27392944 None:intergenic 50.0%
ATCAAAACCATCCTCGCCTC+AGG + chr5_3:27393082-27393101 Msa0806880:CDS 50.0%
!!! GTTTTCGGTGTCGATTTGCC+TGG + chr5_3:27393378-27393397 Msa0806880:intron 50.0%
!! GGTGTCGATTTGCCTGGTAT+CGG + chr5_3:27393384-27393403 Msa0806880:intron 50.0%
TGCTAGTGGCAGAGAGAAGT+TGG + chr5_3:27393682-27393701 Msa0806880:CDS 50.0%
! AAGTTGGCTTCAGTGCCATC+TGG + chr5_3:27393698-27393717 Msa0806880:CDS 50.0%
!! GGTTTTTGGGAGCTTGGGTC+TGG - chr5_3:27392819-27392838 None:intergenic 55.0%
GCGACCGCGATGTATGTTGA+AGG - chr5_3:27392890-27392909 None:intergenic 55.0%
GTAAGAACCTGAGGCGAGGA+TGG - chr5_3:27393092-27393111 None:intergenic 55.0%
AGAGGTAAGAACCTGAGGCG+AGG - chr5_3:27393096-27393115 None:intergenic 55.0%
TACGGACAGACACCGATACC+AGG - chr5_3:27393399-27393418 None:intergenic 55.0%
TTGGCTTCAGTGCCATCTGG+TGG + chr5_3:27393701-27393720 Msa0806880:CDS 55.0%
!! GGTTTTTGGGAGCTTGGGTC+TGG - chr5_3:27392819-27392838 None:intergenic 55.0%
GCGACCGCGATGTATGTTGA+AGG - chr5_3:27392890-27392909 None:intergenic 55.0%
GTAAGAACCTGAGGCGAGGA+TGG - chr5_3:27393092-27393111 None:intergenic 55.0%
AGAGGTAAGAACCTGAGGCG+AGG - chr5_3:27393096-27393115 None:intergenic 55.0%
TACGGACAGACACCGATACC+AGG - chr5_3:27393399-27393418 None:intergenic 55.0%
TTGGCTTCAGTGCCATCTGG+TGG + chr5_3:27393701-27393720 Msa0806880:CDS 55.0%
GCTTCAGTGCCATCTGGTGG+AGG + chr5_3:27393704-27393723 Msa0806880:CDS 60.0%
! GCTGTGGCTGTTGCTGCTTC+CGG + chr5_3:27393728-27393747 Msa0806880:CDS 60.0%
TGCACCAGCTGCCGAAGCAA+AGG + chr5_3:27393772-27393791 Msa0806880:CDS 60.0%
ACCAGCTGCCGAAGCAAAGG+AGG + chr5_3:27393775-27393794 Msa0806880:CDS 60.0%
TCCTCCTTTGCTTCGGCAGC+TGG - chr5_3:27393779-27393798 None:intergenic 60.0%
GCTTCAGTGCCATCTGGTGG+AGG + chr5_3:27393704-27393723 Msa0806880:CDS 60.0%
! GCTGTGGCTGTTGCTGCTTC+CGG + chr5_3:27393728-27393747 Msa0806880:CDS 60.0%
TGCACCAGCTGCCGAAGCAA+AGG + chr5_3:27393772-27393791 Msa0806880:CDS 60.0%
ACCAGCTGCCGAAGCAAAGG+AGG + chr5_3:27393775-27393794 Msa0806880:CDS 60.0%
TCCTCCTTTGCTTCGGCAGC+TGG - chr5_3:27393779-27393798 None:intergenic 60.0%
!! GCCATCTGGTGGAGGTGCTG+TGG + chr5_3:27393712-27393731 Msa0806880:CDS 65.0%
GCCACAGCACCTCCACCAGA+TGG - chr5_3:27393716-27393735 None:intergenic 65.0%
! GTGGCTGTTGCTGCTTCCGG+TGG + chr5_3:27393731-27393750 Msa0806880:CDS 65.0%
! GCTGTTGCTGCTTCCGGTGG+AGG + chr5_3:27393734-27393753 Msa0806880:CDS 65.0%
AGCAGCTGCAGCACCTCCAC+CGG - chr5_3:27393750-27393769 None:intergenic 65.0%
!! GCCATCTGGTGGAGGTGCTG+TGG + chr5_3:27393712-27393731 Msa0806880:CDS 65.0%
GCCACAGCACCTCCACCAGA+TGG - chr5_3:27393716-27393735 None:intergenic 65.0%
! GTGGCTGTTGCTGCTTCCGG+TGG + chr5_3:27393731-27393750 Msa0806880:CDS 65.0%
! GCTGTTGCTGCTTCCGGTGG+AGG + chr5_3:27393734-27393753 Msa0806880:CDS 65.0%
AGCAGCTGCAGCACCTCCAC+CGG - chr5_3:27393750-27393769 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 27392724 27394251 27392724 ID=Msa0806880;Name=Msa0806880
chr5_3 mRNA 27392724 27394251 27392724 ID=Msa0806880-mRNA-1;Parent=Msa0806880;Name=Msa0806880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=217|1|1|1|1|1|4|301|113
chr5_3 exon 27392724 27392938 27392724 ID=Msa0806880-mRNA-1:exon:9736;Parent=Msa0806880-mRNA-1
chr5_3 exon 27393014 27393103 27393014 ID=Msa0806880-mRNA-1:exon:9737;Parent=Msa0806880-mRNA-1
chr5_3 exon 27393606 27393832 27393606 ID=Msa0806880-mRNA-1:exon:9738;Parent=Msa0806880-mRNA-1
chr5_3 exon 27393924 27394251 27393924 ID=Msa0806880-mRNA-1:exon:9739;Parent=Msa0806880-mRNA-1
chr5_3 five_prime_UTR 27392724 27392938 27392724 ID=Msa0806880-mRNA-1:five_prime_utr;Parent=Msa0806880-mRNA-1
chr5_3 five_prime_UTR 27393014 27393015 27393014 ID=Msa0806880-mRNA-1:five_prime_utr;Parent=Msa0806880-mRNA-1
chr5_3 CDS 27393016 27393103 27393016 ID=Msa0806880-mRNA-1:cds;Parent=Msa0806880-mRNA-1
chr5_3 CDS 27393606 27393832 27393606 ID=Msa0806880-mRNA-1:cds;Parent=Msa0806880-mRNA-1
chr5_3 CDS 27393924 27393950 27393924 ID=Msa0806880-mRNA-1:cds;Parent=Msa0806880-mRNA-1
chr5_3 three_prime_UTR 27393951 27394251 27393951 ID=Msa0806880-mRNA-1:three_prime_utr;Parent=Msa0806880-mRNA-1
Gene Sequence

>Msa0806880

ATGAAGATCATCGCAGCTTATTTGTTGGCTGTTTTGGGCGGTAACGCTGCCCCTTCCGCTGATGATATCAAAACCATCCTCGCCTCAGTTGGAGTTGAAGCCGAGGACTCAAATGTTGAGTTGCTTTTGAGTGAAGTCAAGGGCAAGGATTTTGCCGAGCTAATTGCTAGTGGCAGAGAGAAGTTGGCTTCAGTGCCATCTGGTGGAGGTGCTGTGGCTGTTGCTGCTTCCGGTGGAGGTGCTGCAGCTGCTGCTGCACCAGCTGCCGAAGCAAAGGAGGAAAAGAAGGTTGAAGAAAAGGAAGAATCCGATGATGACATGGGATTTAGCTTGTTCGACTAG

Protein sequence

>Msa0806880

MKIIAAYLLAVLGGNAAPSADDIKTILASVGVEAEDSNVELLLSEVKGKDFAELIASGREKLASVPSGGGAVAVAASGGGAAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD*