AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1413500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413500 MtrunA17_Chr5g0421491 96.460 113 4 0 1 113 1 113 6.20e-71 207
Msa1413500 MtrunA17_Chr2g0321121 89.381 113 12 0 1 113 1 113 9.65e-46 143
Msa1413500 MtrunA17_Chr1g0179001 73.451 113 29 1 1 113 1 112 3.51e-28 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413500 AT2G27710.4 77.143 70 16 0 1 70 1 70 3.65e-32 108
Msa1413500 AT3G44590.1 65.487 113 37 2 1 113 1 111 7.91e-31 106
Msa1413500 AT3G44590.2 65.487 113 37 2 1 113 1 111 7.91e-31 106
Msa1413500 AT2G27720.1 66.087 115 37 1 1 113 1 115 4.88e-28 99.4
Msa1413500 AT2G27710.1 75.385 65 16 0 1 65 1 65 1.78e-25 92.8
Msa1413500 AT2G27710.2 75.385 65 16 0 1 65 1 65 1.78e-25 92.8
Msa1413500 AT2G27710.3 75.385 65 16 0 1 65 1 65 1.78e-25 92.8
Msa1413500 AT2G27720.3 59.843 127 37 2 1 113 1 127 1.89e-24 90.5
Msa1413500 AT3G28500.1 55.556 117 46 4 1 113 1 115 3.73e-24 89.4
Msa1413500 AT2G27720.2 57.692 130 38 2 1 113 1 130 3.11e-23 87.4
Msa1413500 AT2G27720.4 66.667 87 27 1 29 113 5 91 2.57e-14 63.5
Msa1413500 AT5G40040.1 57.018 114 48 1 1 113 1 114 9.12e-14 62.8

Find 48 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTATTTGTTGGCTGTTT+TGG 0.077686 tig0024029:+50676 Msa1413500:CDS
TCAACTAATTTATATGATTA+GGG 0.288176 tig0024029:-50483 None:intergenic
TCCTCCTTTGCTTCGGCAGC+TGG 0.312544 tig0024029:-51423 None:intergenic
AAAATAAATTAACCAATAGT+AGG 0.326036 tig0024029:-51747 None:intergenic
GTCAACTAATTTATATGATT+AGG 0.326658 tig0024029:-50484 None:intergenic
TATTTCAACTAAACTCTAAC+AGG 0.328700 tig0024029:-51634 None:intergenic
ACGCACTTGGCTGGTTAGAT+TGG 0.338544 tig0024029:-50568 None:intergenic
TTTCTGCATTACATTGTTGC+TGG 0.354590 tig0024029:+51767 Msa1413500:three_prime_UTR
AAAGTGTTTGACCCTACTAT+TGG 0.358905 tig0024029:+51735 Msa1413500:three_prime_UTR
GCTGTGGCTGTTGCTGCTTC+CGG 0.372107 tig0024029:+51375 Msa1413500:CDS
GGAAAAGAAGGTTGAAGAAA+AGG 0.373370 tig0024029:+51443 Msa1413500:CDS
CGCACTTGGCTGGTTAGATT+GGG 0.377739 tig0024029:-50567 None:intergenic
GATCATCGCAGCTTATTTGT+TGG 0.413285 tig0024029:+50667 Msa1413500:CDS
TGGAAACACAGAAAAGATAA+AGG 0.423221 tig0024029:+50438 Msa1413500:five_prime_UTR
GCTGTTGCTGCTTCCGGTGG+AGG 0.434566 tig0024029:+51381 Msa1413500:CDS
ATTCTTATAAACGCGACATC+AGG 0.454905 tig0024029:+51813 Msa1413500:three_prime_UTR
TGCTAGTGGCAGAGAGAAGT+TGG 0.462166 tig0024029:+51329 Msa1413500:CDS
ACTTCTAACTGTCTAATGTA+AGG 0.467863 tig0024029:-51852 None:intergenic
AGCAGCTGCAGCACCTCCAC+CGG 0.469171 tig0024029:-51394 None:intergenic
CAACTCAACATTTGAGTCCT+CGG 0.476762 tig0024029:-51265 None:intergenic
TAATCATATAAATTAGTTGA+CGG 0.485864 tig0024029:+50486 Msa1413500:five_prime_UTR
ATCAAAACCATCCTCGCCTC+AGG 0.486163 tig0024029:+50728 Msa1413500:CDS
TGCACCAGCTGCCGAAGCAA+AGG 0.494374 tig0024029:+51419 Msa1413500:CDS
AAGTTGGCTTCAGTGCCATC+TGG 0.501913 tig0024029:+51345 Msa1413500:CDS
GGGATTTAGCTTGTTCGACT+AGG 0.506077 tig0024029:+51576 Msa1413500:CDS
GCCATCTGGTGGAGGTGCTG+TGG 0.508789 tig0024029:+51359 Msa1413500:CDS
TTTGATATCATCAGCGGAAG+GGG 0.519904 tig0024029:-50711 None:intergenic
AACAAAGAAACTTACATCAT+CGG 0.541190 tig0024029:-51472 None:intergenic
GCTTCAGTGCCATCTGGTGG+AGG 0.543882 tig0024029:+51351 Msa1413500:CDS
CGAAGCAAAGGAGGAAAAGA+AGG 0.550592 tig0024029:+51431 Msa1413500:CDS
GTAAGAACCTGAGGCGAGGA+TGG 0.551127 tig0024029:-50735 None:intergenic
TTGGCTTCAGTGCCATCTGG+TGG 0.551596 tig0024029:+51348 Msa1413500:CDS
GTGGCTGTTGCTGCTTCCGG+TGG 0.555914 tig0024029:+51378 Msa1413500:CDS
AAATAAATTAACCAATAGTA+GGG 0.556583 tig0024029:-51746 None:intergenic
TTTGAGTGAAGTCAAGGGCA+AGG 0.559487 tig0024029:+51290 Msa1413500:CDS
GTGAAGGTGAAGCTCTGAAA+CGG 0.559557 tig0024029:-50511 None:intergenic
ATTTAGCTTGTTCGACTAGG+TGG 0.566929 tig0024029:+51579 Msa1413500:exon
CTTATAAACGCGACATCAGG+AGG 0.573200 tig0024029:+51816 Msa1413500:three_prime_UTR
GCAATGTGTTGCAATTGAAA+AGG 0.578024 tig0024029:-51703 None:intergenic
ACCAGCTGCCGAAGCAAAGG+AGG 0.585812 tig0024029:+51422 Msa1413500:CDS
GCGACCGCGATGTATGTTGA+AGG 0.590529 tig0024029:-50533 None:intergenic
GCCACAGCACCTCCACCAGA+TGG 0.592642 tig0024029:-51360 None:intergenic
TCTGCCACTAGCAATTAGCT+CGG 0.640840 tig0024029:-51319 None:intergenic
TTTGCCGAGCTAATTGCTAG+TGG 0.651963 tig0024029:+51315 Msa1413500:CDS
AGAGGTAAGAACCTGAGGCG+AGG 0.656993 tig0024029:-50739 None:intergenic
TATAGTTGGAGTTGAAGCCG+AGG 0.682665 tig0024029:+51248 Msa1413500:intron
GCGATGTATGTTGAAGGTGA+AGG 0.708805 tig0024029:-50527 None:intergenic
TTCACCTTCAACATACATCG+CGG 0.762337 tig0024029:+50529 Msa1413500:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGGTATAAAAATGAA+GGG + tig0024029:50396-50415 Msa1413500:five_prime_UTR 15.0%
!! TCAACTAATTTATATGATTA+GGG - tig0024029:50486-50505 None:intergenic 15.0%
!! TAATCATATAAATTAGTTGA+CGG + tig0024029:50486-50505 Msa1413500:five_prime_UTR 15.0%
!!! TTCTTTGTTATTTTTATAGT+TGG + tig0024029:51234-51253 Msa1413500:intron 15.0%
!! AAATAAATTAACCAATAGTA+GGG - tig0024029:51749-51768 None:intergenic 15.0%
!! AAAATAAATTAACCAATAGT+AGG - tig0024029:51750-51769 None:intergenic 15.0%
!! AAAAATGGTATAAAAATGAA+GGG + tig0024029:50396-50415 Msa1413500:five_prime_UTR 15.0%
!! TCAACTAATTTATATGATTA+GGG - tig0024029:50486-50505 None:intergenic 15.0%
!! TAATCATATAAATTAGTTGA+CGG + tig0024029:50486-50505 Msa1413500:five_prime_UTR 15.0%
!!! TTCTTTGTTATTTTTATAGT+TGG + tig0024029:51234-51253 Msa1413500:intron 15.0%
!! AAATAAATTAACCAATAGTA+GGG - tig0024029:51749-51768 None:intergenic 15.0%
!! AAAATAAATTAACCAATAGT+AGG - tig0024029:51750-51769 None:intergenic 15.0%
!! CAAAAATGGTATAAAAATGA+AGG + tig0024029:50395-50414 Msa1413500:five_prime_UTR 20.0%
!!! TTTATATGATTAGGGTTTTT+GGG - tig0024029:50478-50497 None:intergenic 20.0%
!!! ATTTATATGATTAGGGTTTT+TGG - tig0024029:50479-50498 None:intergenic 20.0%
!! GTCAACTAATTTATATGATT+AGG - tig0024029:50487-50506 None:intergenic 20.0%
!! TTGATTGTAATTGAATATAG+TGG + tig0024029:50894-50913 Msa1413500:intron 20.0%
!!! TTTCTACATTGAATTGTTTT+CGG + tig0024029:51010-51029 Msa1413500:intron 20.0%
!! ATCAAAATTCAATGTTTATC+AGG - tig0024029:51086-51105 None:intergenic 20.0%
!!! AGTTACAAATTAGTTTTTGT+GGG + tig0024029:51675-51694 Msa1413500:three_prime_UTR 20.0%
!!! ATAGATTTGAAGTTTTAATG+TGG + tig0024029:51876-51895 Msa1413500:three_prime_UTR 20.0%
!! CAAAAATGGTATAAAAATGA+AGG + tig0024029:50395-50414 Msa1413500:five_prime_UTR 20.0%
!!! TTTATATGATTAGGGTTTTT+GGG - tig0024029:50478-50497 None:intergenic 20.0%
!!! ATTTATATGATTAGGGTTTT+TGG - tig0024029:50479-50498 None:intergenic 20.0%
!! GTCAACTAATTTATATGATT+AGG - tig0024029:50487-50506 None:intergenic 20.0%
!! TTGATTGTAATTGAATATAG+TGG + tig0024029:50894-50913 Msa1413500:intron 20.0%
!!! TTTCTACATTGAATTGTTTT+CGG + tig0024029:51010-51029 Msa1413500:intron 20.0%
!! ATCAAAATTCAATGTTTATC+AGG - tig0024029:51086-51105 None:intergenic 20.0%
!!! AGTTACAAATTAGTTTTTGT+GGG + tig0024029:51675-51694 Msa1413500:three_prime_UTR 20.0%
! AAACATAACCAAAAAAAGAG+AGG - tig0024029:50760-50779 None:intergenic 25.0%
! GTTATGTAGTTGAATGAATT+AGG + tig0024029:50870-50889 Msa1413500:intron 25.0%
! AAACAAAAAATTGCAAAGAG+TGG - tig0024029:50930-50949 None:intergenic 25.0%
! GCTTCAATAATCAAAATCTA+CGG - tig0024029:51064-51083 None:intergenic 25.0%
!! ATCCTTGACAAATCAATTTT+TGG + tig0024029:51108-51127 Msa1413500:intron 25.0%
! AACAAAGAAACTTACATCAT+CGG - tig0024029:51475-51494 None:intergenic 25.0%
! TATTTCAACTAAACTCTAAC+AGG - tig0024029:51637-51656 None:intergenic 25.0%
!!! GAGTTACAAATTAGTTTTTG+TGG + tig0024029:51674-51693 Msa1413500:three_prime_UTR 25.0%
! AAACATAACCAAAAAAAGAG+AGG - tig0024029:50760-50779 None:intergenic 25.0%
! GTTATGTAGTTGAATGAATT+AGG + tig0024029:50870-50889 Msa1413500:intron 25.0%
! AAACAAAAAATTGCAAAGAG+TGG - tig0024029:50930-50949 None:intergenic 25.0%
! GCTTCAATAATCAAAATCTA+CGG - tig0024029:51064-51083 None:intergenic 25.0%
!! ATCCTTGACAAATCAATTTT+TGG + tig0024029:51108-51127 Msa1413500:intron 25.0%
! AACAAAGAAACTTACATCAT+CGG - tig0024029:51475-51494 None:intergenic 25.0%
! TATTTCAACTAAACTCTAAC+AGG - tig0024029:51637-51656 None:intergenic 25.0%
!!! GAGTTACAAATTAGTTTTTG+TGG + tig0024029:51674-51693 Msa1413500:three_prime_UTR 25.0%
AAAATGAAGGGCAAAAAACA+AGG + tig0024029:50408-50427 Msa1413500:five_prime_UTR 30.0%
AAATGAAGGGCAAAAAACAA+GGG + tig0024029:50409-50428 Msa1413500:five_prime_UTR 30.0%
TGGAAACACAGAAAAGATAA+AGG + tig0024029:50438-50457 Msa1413500:five_prime_UTR 30.0%
!! GACCAAAAATTGATTTGTCA+AGG - tig0024029:51113-51132 None:intergenic 30.0%
! AGGTGGTTTATTGTTCTTTT+TGG + tig0024029:51596-51615 Msa1413500:exon 30.0%
ACTTCTAACTGTCTAATGTA+AGG - tig0024029:51855-51874 None:intergenic 30.0%
AAAATGAAGGGCAAAAAACA+AGG + tig0024029:50408-50427 Msa1413500:five_prime_UTR 30.0%
AAATGAAGGGCAAAAAACAA+GGG + tig0024029:50409-50428 Msa1413500:five_prime_UTR 30.0%
TGGAAACACAGAAAAGATAA+AGG + tig0024029:50438-50457 Msa1413500:five_prime_UTR 30.0%
!! GACCAAAAATTGATTTGTCA+AGG - tig0024029:51113-51132 None:intergenic 30.0%
! AGGTGGTTTATTGTTCTTTT+TGG + tig0024029:51596-51615 Msa1413500:exon 30.0%
ACTTCTAACTGTCTAATGTA+AGG - tig0024029:51855-51874 None:intergenic 30.0%
!! GCAAAAAACAAGGGTATTTC+TGG + tig0024029:50418-50437 Msa1413500:five_prime_UTR 35.0%
GAATGAAAAACATACGCACT+TGG - tig0024029:50584-50603 None:intergenic 35.0%
!! AGCTTATTTGTTGGCTGTTT+TGG + tig0024029:50676-50695 Msa1413500:CDS 35.0%
!! GCTTATTTGTTGGCTGTTTT+GGG + tig0024029:50677-50696 Msa1413500:CDS 35.0%
! TTTTGATATCATCAGCGGAA+GGG - tig0024029:50715-50734 None:intergenic 35.0%
!!! GATGGTTTTGATATCATCAG+CGG - tig0024029:50720-50739 None:intergenic 35.0%
!!! GGTTCTTACCTCTCTTTTTT+TGG + tig0024029:50749-50768 Msa1413500:intron 35.0%
!! TTGCTTTTGAGTGAAGTCAA+GGG + tig0024029:51285-51304 Msa1413500:CDS 35.0%
GGAAAAGAAGGTTGAAGAAA+AGG + tig0024029:51443-51462 Msa1413500:CDS 35.0%
!!! CATTGTCATCTTTGTTTTGC+AGG + tig0024029:51549-51568 Msa1413500:intron 35.0%
!!! ATCTTTGTTTTGCAGGACAT+GGG + tig0024029:51556-51575 Msa1413500:intron 35.0%
GCAATGTGTTGCAATTGAAA+AGG - tig0024029:51706-51725 None:intergenic 35.0%
! AAAGTGTTTGACCCTACTAT+TGG + tig0024029:51735-51754 Msa1413500:three_prime_UTR 35.0%
TTTCTGCATTACATTGTTGC+TGG + tig0024029:51767-51786 Msa1413500:three_prime_UTR 35.0%
ATTCTTATAAACGCGACATC+AGG + tig0024029:51813-51832 Msa1413500:three_prime_UTR 35.0%
!! GCAAAAAACAAGGGTATTTC+TGG + tig0024029:50418-50437 Msa1413500:five_prime_UTR 35.0%
GAATGAAAAACATACGCACT+TGG - tig0024029:50584-50603 None:intergenic 35.0%
!! AGCTTATTTGTTGGCTGTTT+TGG + tig0024029:50676-50695 Msa1413500:CDS 35.0%
!! GCTTATTTGTTGGCTGTTTT+GGG + tig0024029:50677-50696 Msa1413500:CDS 35.0%
! TTTTGATATCATCAGCGGAA+GGG - tig0024029:50715-50734 None:intergenic 35.0%
!!! GATGGTTTTGATATCATCAG+CGG - tig0024029:50720-50739 None:intergenic 35.0%
!!! GGTTCTTACCTCTCTTTTTT+TGG + tig0024029:50749-50768 Msa1413500:intron 35.0%
!! TTGCTTTTGAGTGAAGTCAA+GGG + tig0024029:51285-51304 Msa1413500:CDS 35.0%
GGAAAAGAAGGTTGAAGAAA+AGG + tig0024029:51443-51462 Msa1413500:CDS 35.0%
!!! CATTGTCATCTTTGTTTTGC+AGG + tig0024029:51549-51568 Msa1413500:intron 35.0%
!!! ATCTTTGTTTTGCAGGACAT+GGG + tig0024029:51556-51575 Msa1413500:intron 35.0%
GCAATGTGTTGCAATTGAAA+AGG - tig0024029:51706-51725 None:intergenic 35.0%
! AAAGTGTTTGACCCTACTAT+TGG + tig0024029:51735-51754 Msa1413500:three_prime_UTR 35.0%
TTTCTGCATTACATTGTTGC+TGG + tig0024029:51767-51786 Msa1413500:three_prime_UTR 35.0%
ATTCTTATAAACGCGACATC+AGG + tig0024029:51813-51832 Msa1413500:three_prime_UTR 35.0%
!! ATTAGGGTTTTTGGGAGCTT+GGG - tig0024029:50470-50489 None:intergenic 40.0%
TTCACCTTCAACATACATCG+CGG + tig0024029:50529-50548 Msa1413500:five_prime_UTR 40.0%
CAACACGAATCAACAACGTA+CGG - tig0024029:50618-50637 None:intergenic 40.0%
GATCATCGCAGCTTATTTGT+TGG + tig0024029:50667-50686 Msa1413500:CDS 40.0%
!! TATTTGTTGGCTGTTTTGGG+CGG + tig0024029:50680-50699 Msa1413500:CDS 40.0%
TTTGATATCATCAGCGGAAG+GGG - tig0024029:50714-50733 None:intergenic 40.0%
!! GTTTTGATATCATCAGCGGA+AGG - tig0024029:50716-50735 None:intergenic 40.0%
AAAAGAGAGGTAAGAACCTG+AGG - tig0024029:50747-50766 None:intergenic 40.0%
CAACTCAACATTTGAGTCCT+CGG - tig0024029:51268-51287 None:intergenic 40.0%
!!! GTTGCTTTTGAGTGAAGTCA+AGG + tig0024029:51284-51303 Msa1413500:CDS 40.0%
! CTTCTTTTCCTCCTTTGCTT+CGG - tig0024029:51433-51452 None:intergenic 40.0%
!!! CATCTTTGTTTTGCAGGACA+TGG + tig0024029:51555-51574 Msa1413500:intron 40.0%
!! ATTTAGCTTGTTCGACTAGG+TGG + tig0024029:51579-51598 Msa1413500:exon 40.0%
!! ATTAGGGTTTTTGGGAGCTT+GGG - tig0024029:50470-50489 None:intergenic 40.0%
TTCACCTTCAACATACATCG+CGG + tig0024029:50529-50548 Msa1413500:five_prime_UTR 40.0%
CAACACGAATCAACAACGTA+CGG - tig0024029:50618-50637 None:intergenic 40.0%
GATCATCGCAGCTTATTTGT+TGG + tig0024029:50667-50686 Msa1413500:CDS 40.0%
!! TATTTGTTGGCTGTTTTGGG+CGG + tig0024029:50680-50699 Msa1413500:CDS 40.0%
TTTGATATCATCAGCGGAAG+GGG - tig0024029:50714-50733 None:intergenic 40.0%
!! GTTTTGATATCATCAGCGGA+AGG - tig0024029:50716-50735 None:intergenic 40.0%
AAAAGAGAGGTAAGAACCTG+AGG - tig0024029:50747-50766 None:intergenic 40.0%
CAACTCAACATTTGAGTCCT+CGG - tig0024029:51268-51287 None:intergenic 40.0%
!!! GTTGCTTTTGAGTGAAGTCA+AGG + tig0024029:51284-51303 Msa1413500:CDS 40.0%
! CTTCTTTTCCTCCTTTGCTT+CGG - tig0024029:51433-51452 None:intergenic 40.0%
!!! CATCTTTGTTTTGCAGGACA+TGG + tig0024029:51555-51574 Msa1413500:intron 40.0%
!! ATTTAGCTTGTTCGACTAGG+TGG + tig0024029:51579-51598 Msa1413500:exon 40.0%
!! GATTAGGGTTTTTGGGAGCT+TGG - tig0024029:50471-50490 None:intergenic 45.0%
!! GTGAAGGTGAAGCTCTGAAA+CGG - tig0024029:50514-50533 None:intergenic 45.0%
GCGATGTATGTTGAAGGTGA+AGG - tig0024029:50530-50549 None:intergenic 45.0%
GAAAAACATACGCACTTGGC+TGG - tig0024029:50580-50599 None:intergenic 45.0%
! GCTTTAGCTCACTTCTTCAG+AGG - tig0024029:51142-51161 None:intergenic 45.0%
TATAGTTGGAGTTGAAGCCG+AGG + tig0024029:51248-51267 Msa1413500:intron 45.0%
TTTGAGTGAAGTCAAGGGCA+AGG + tig0024029:51290-51309 Msa1413500:CDS 45.0%
TTTGCCGAGCTAATTGCTAG+TGG + tig0024029:51315-51334 Msa1413500:CDS 45.0%
TCTGCCACTAGCAATTAGCT+CGG - tig0024029:51322-51341 None:intergenic 45.0%
CGAAGCAAAGGAGGAAAAGA+AGG + tig0024029:51431-51450 Msa1413500:CDS 45.0%
!! GGGATTTAGCTTGTTCGACT+AGG + tig0024029:51576-51595 Msa1413500:CDS 45.0%
CTTATAAACGCGACATCAGG+AGG + tig0024029:51816-51835 Msa1413500:three_prime_UTR 45.0%
!! GATTAGGGTTTTTGGGAGCT+TGG - tig0024029:50471-50490 None:intergenic 45.0%
!! GTGAAGGTGAAGCTCTGAAA+CGG - tig0024029:50514-50533 None:intergenic 45.0%
GCGATGTATGTTGAAGGTGA+AGG - tig0024029:50530-50549 None:intergenic 45.0%
GAAAAACATACGCACTTGGC+TGG - tig0024029:50580-50599 None:intergenic 45.0%
! GCTTTAGCTCACTTCTTCAG+AGG - tig0024029:51142-51161 None:intergenic 45.0%
TATAGTTGGAGTTGAAGCCG+AGG + tig0024029:51248-51267 Msa1413500:intron 45.0%
TTTGAGTGAAGTCAAGGGCA+AGG + tig0024029:51290-51309 Msa1413500:CDS 45.0%
TTTGCCGAGCTAATTGCTAG+TGG + tig0024029:51315-51334 Msa1413500:CDS 45.0%
TCTGCCACTAGCAATTAGCT+CGG - tig0024029:51322-51341 None:intergenic 45.0%
CGAAGCAAAGGAGGAAAAGA+AGG + tig0024029:51431-51450 Msa1413500:CDS 45.0%
!! GGGATTTAGCTTGTTCGACT+AGG + tig0024029:51576-51595 Msa1413500:CDS 45.0%
CTTATAAACGCGACATCAGG+AGG + tig0024029:51816-51835 Msa1413500:three_prime_UTR 45.0%
!!! TTATTTTTTTAAAACAAAAA+TGG + tig0024029:50381-50400 Msa1413500:five_prime_UTR 5.0%
!!! TTATTTTTTTAAAACAAAAA+TGG + tig0024029:50381-50400 Msa1413500:five_prime_UTR 5.0%
!! GTTTTTGGGAGCTTGGGTCT+GGG - tig0024029:50464-50483 None:intergenic 50.0%
! CGCACTTGGCTGGTTAGATT+GGG - tig0024029:50570-50589 None:intergenic 50.0%
! ACGCACTTGGCTGGTTAGAT+TGG - tig0024029:50571-50590 None:intergenic 50.0%
ATCAAAACCATCCTCGCCTC+AGG + tig0024029:50728-50747 Msa1413500:CDS 50.0%
!!! GTTTTCGGTGTCGATTTGCC+TGG + tig0024029:51025-51044 Msa1413500:intron 50.0%
!! GGTGTCGATTTGCCTGGTAT+CGG + tig0024029:51031-51050 Msa1413500:intron 50.0%
TGCTAGTGGCAGAGAGAAGT+TGG + tig0024029:51329-51348 Msa1413500:CDS 50.0%
! AAGTTGGCTTCAGTGCCATC+TGG + tig0024029:51345-51364 Msa1413500:CDS 50.0%
!! GTTTTTGGGAGCTTGGGTCT+GGG - tig0024029:50464-50483 None:intergenic 50.0%
! CGCACTTGGCTGGTTAGATT+GGG - tig0024029:50570-50589 None:intergenic 50.0%
! ACGCACTTGGCTGGTTAGAT+TGG - tig0024029:50571-50590 None:intergenic 50.0%
ATCAAAACCATCCTCGCCTC+AGG + tig0024029:50728-50747 Msa1413500:CDS 50.0%
!!! GTTTTCGGTGTCGATTTGCC+TGG + tig0024029:51025-51044 Msa1413500:intron 50.0%
!! GGTGTCGATTTGCCTGGTAT+CGG + tig0024029:51031-51050 Msa1413500:intron 50.0%
TGCTAGTGGCAGAGAGAAGT+TGG + tig0024029:51329-51348 Msa1413500:CDS 50.0%
! AAGTTGGCTTCAGTGCCATC+TGG + tig0024029:51345-51364 Msa1413500:CDS 50.0%
!! GGTTTTTGGGAGCTTGGGTC+TGG - tig0024029:50465-50484 None:intergenic 55.0%
GCGACCGCGATGTATGTTGA+AGG - tig0024029:50536-50555 None:intergenic 55.0%
GTAAGAACCTGAGGCGAGGA+TGG - tig0024029:50738-50757 None:intergenic 55.0%
AGAGGTAAGAACCTGAGGCG+AGG - tig0024029:50742-50761 None:intergenic 55.0%
TACGGACAGACACCGATACC+AGG - tig0024029:51046-51065 None:intergenic 55.0%
TTGGCTTCAGTGCCATCTGG+TGG + tig0024029:51348-51367 Msa1413500:CDS 55.0%
!! GGTTTTTGGGAGCTTGGGTC+TGG - tig0024029:50465-50484 None:intergenic 55.0%
GCGACCGCGATGTATGTTGA+AGG - tig0024029:50536-50555 None:intergenic 55.0%
GTAAGAACCTGAGGCGAGGA+TGG - tig0024029:50738-50757 None:intergenic 55.0%
AGAGGTAAGAACCTGAGGCG+AGG - tig0024029:50742-50761 None:intergenic 55.0%
TACGGACAGACACCGATACC+AGG - tig0024029:51046-51065 None:intergenic 55.0%
TTGGCTTCAGTGCCATCTGG+TGG + tig0024029:51348-51367 Msa1413500:CDS 55.0%
GCTTCAGTGCCATCTGGTGG+AGG + tig0024029:51351-51370 Msa1413500:CDS 60.0%
! GCTGTGGCTGTTGCTGCTTC+CGG + tig0024029:51375-51394 Msa1413500:CDS 60.0%
TGCACCAGCTGCCGAAGCAA+AGG + tig0024029:51419-51438 Msa1413500:CDS 60.0%
ACCAGCTGCCGAAGCAAAGG+AGG + tig0024029:51422-51441 Msa1413500:CDS 60.0%
TCCTCCTTTGCTTCGGCAGC+TGG - tig0024029:51426-51445 None:intergenic 60.0%
GCTTCAGTGCCATCTGGTGG+AGG + tig0024029:51351-51370 Msa1413500:CDS 60.0%
! GCTGTGGCTGTTGCTGCTTC+CGG + tig0024029:51375-51394 Msa1413500:CDS 60.0%
TGCACCAGCTGCCGAAGCAA+AGG + tig0024029:51419-51438 Msa1413500:CDS 60.0%
ACCAGCTGCCGAAGCAAAGG+AGG + tig0024029:51422-51441 Msa1413500:CDS 60.0%
TCCTCCTTTGCTTCGGCAGC+TGG - tig0024029:51426-51445 None:intergenic 60.0%
!! GCCATCTGGTGGAGGTGCTG+TGG + tig0024029:51359-51378 Msa1413500:CDS 65.0%
GCCACAGCACCTCCACCAGA+TGG - tig0024029:51363-51382 None:intergenic 65.0%
! GTGGCTGTTGCTGCTTCCGG+TGG + tig0024029:51378-51397 Msa1413500:CDS 65.0%
! GCTGTTGCTGCTTCCGGTGG+AGG + tig0024029:51381-51400 Msa1413500:CDS 65.0%
AGCAGCTGCAGCACCTCCAC+CGG - tig0024029:51397-51416 None:intergenic 65.0%
!! GCCATCTGGTGGAGGTGCTG+TGG + tig0024029:51359-51378 Msa1413500:CDS 65.0%
GCCACAGCACCTCCACCAGA+TGG - tig0024029:51363-51382 None:intergenic 65.0%
! GTGGCTGTTGCTGCTTCCGG+TGG + tig0024029:51378-51397 Msa1413500:CDS 65.0%
! GCTGTTGCTGCTTCCGGTGG+AGG + tig0024029:51381-51400 Msa1413500:CDS 65.0%
AGCAGCTGCAGCACCTCCAC+CGG - tig0024029:51397-51416 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0024029 gene 50370 51898 50370 ID=Msa1413500;Name=Msa1413500
tig0024029 mRNA 50370 51898 50370 ID=Msa1413500-mRNA-1;Parent=Msa1413500;Name=Msa1413500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=217|1|1|1|1|1|4|301|113
tig0024029 exon 50370 50584 50370 ID=Msa1413500-mRNA-1:exon:21174;Parent=Msa1413500-mRNA-1
tig0024029 exon 50660 50749 50660 ID=Msa1413500-mRNA-1:exon:21175;Parent=Msa1413500-mRNA-1
tig0024029 exon 51253 51479 51253 ID=Msa1413500-mRNA-1:exon:21176;Parent=Msa1413500-mRNA-1
tig0024029 exon 51571 51898 51571 ID=Msa1413500-mRNA-1:exon:21177;Parent=Msa1413500-mRNA-1
tig0024029 five_prime_UTR 50370 50584 50370 ID=Msa1413500-mRNA-1:five_prime_utr;Parent=Msa1413500-mRNA-1
tig0024029 five_prime_UTR 50660 50661 50660 ID=Msa1413500-mRNA-1:five_prime_utr;Parent=Msa1413500-mRNA-1
tig0024029 CDS 50662 50749 50662 ID=Msa1413500-mRNA-1:cds;Parent=Msa1413500-mRNA-1
tig0024029 CDS 51253 51479 51253 ID=Msa1413500-mRNA-1:cds;Parent=Msa1413500-mRNA-1
tig0024029 CDS 51571 51597 51571 ID=Msa1413500-mRNA-1:cds;Parent=Msa1413500-mRNA-1
tig0024029 three_prime_UTR 51598 51898 51598 ID=Msa1413500-mRNA-1:three_prime_utr;Parent=Msa1413500-mRNA-1
Gene Sequence

>Msa1413500

ATGAAGATCATCGCAGCTTATTTGTTGGCTGTTTTGGGCGGTAACGCTGCCCCTTCCGCTGATGATATCAAAACCATCCTCGCCTCAGTTGGAGTTGAAGCCGAGGACTCAAATGTTGAGTTGCTTTTGAGTGAAGTCAAGGGCAAGGATTTTGCCGAGCTAATTGCTAGTGGCAGAGAGAAGTTGGCTTCAGTGCCATCTGGTGGAGGTGCTGTGGCTGTTGCTGCTTCCGGTGGAGGTGCTGCAGCTGCTGCTGCACCAGCTGCCGAAGCAAAGGAGGAAAAGAAGGTTGAAGAAAAGGAAGAATCCGATGATGACATGGGATTTAGCTTGTTCGACTAG

Protein sequence

>Msa1413500

MKIIAAYLLAVLGGNAAPSADDIKTILASVGVEAEDSNVELLLSEVKGKDFAELIASGREKLASVPSGGGAVAVAASGGGAAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD*