Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009280 | XP_013447637.2 | 84.946 | 93 | 11 | 1 | 1 | 90 | 763 | 855 | 6.90e-43 | 159 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009280 | A0A396GTL6 | 84.946 | 93 | 11 | 1 | 1 | 90 | 763 | 855 | 3.30e-43 | 159 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0752580 | Msa1009280 | 0.801487 | 8.800008e-49 | -8.615850e-47 |
Msa0754500 | Msa1009280 | 0.805923 | 1.055873e-49 | -8.615850e-47 |
Msa0811000 | Msa1009280 | 0.806737 | 7.113983e-50 | -8.615850e-47 |
Msa0830900 | Msa1009280 | 0.801244 | 9.864905e-49 | -8.615850e-47 |
Msa0389060 | Msa1009280 | 0.804586 | 2.011980e-49 | -8.615850e-47 |
Msa0409820 | Msa1009280 | 0.814393 | 1.576041e-51 | -8.615850e-47 |
Msa1009280 | Msa1138450 | 0.809226 | 2.100711e-50 | -8.615850e-47 |
Msa1009280 | Msa1151820 | 0.808986 | 2.365178e-50 | -8.615850e-47 |
Msa0853500 | Msa1009280 | 0.801630 | 8.224782e-49 | -8.615850e-47 |
Msa0862020 | Msa1009280 | 0.819838 | 9.411323e-53 | -8.615850e-47 |
Msa0911910 | Msa1009280 | 0.801096 | 1.057956e-48 | -8.615850e-47 |
Msa0970050 | Msa1009280 | 0.811552 | 6.613665e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009280 | MtrunA17_Chr7g0219691 | 84.946 | 93 | 11 | 1 | 1 | 90 | 763 | 855 | 6.35e-47 | 159 |
Msa1009280 | MtrunA17_Chr7g0219721 | 84.946 | 93 | 11 | 1 | 1 | 90 | 763 | 855 | 7.21e-47 | 159 |
Msa1009280 | MtrunA17_Chr7g0219781 | 73.404 | 94 | 21 | 1 | 1 | 90 | 766 | 859 | 4.29e-38 | 134 |
Msa1009280 | MtrunA17_Chr7g0219671 | 71.111 | 90 | 22 | 1 | 1 | 86 | 763 | 852 | 8.89e-36 | 127 |
Msa1009280 | MtrunA17_Chr7g0219761 | 73.239 | 71 | 19 | 0 | 1 | 71 | 18 | 88 | 1.78e-31 | 106 |
Msa1009280 | MtrunA17_Chr7g0219681 | 77.778 | 63 | 14 | 0 | 1 | 63 | 754 | 816 | 5.92e-28 | 105 |
Msa1009280 | MtrunA17_Chr7g0219571 | 53.333 | 90 | 39 | 2 | 1 | 88 | 765 | 853 | 9.22e-24 | 93.6 |
Msa1009280 | MtrunA17_Chr7g0219651 | 53.333 | 90 | 39 | 2 | 1 | 88 | 1750 | 1838 | 3.32e-23 | 92.0 |
Msa1009280 | MtrunA17_Chr7g0219651 | 55.556 | 81 | 34 | 2 | 1 | 81 | 754 | 832 | 1.84e-21 | 87.4 |
Msa1009280 | MtrunA17_Chr4g0025961 | 43.119 | 109 | 45 | 2 | 1 | 93 | 758 | 865 | 7.71e-21 | 85.5 |
Msa1009280 | MtrunA17_Chr7g0219581 | 63.077 | 65 | 23 | 1 | 1 | 65 | 189 | 252 | 1.90e-20 | 83.2 |
Msa1009280 | MtrunA17_Chr7g0219601 | 48.352 | 91 | 43 | 2 | 1 | 87 | 749 | 839 | 3.31e-20 | 83.6 |
Msa1009280 | MtrunA17_Chr7g0219611 | 45.652 | 92 | 49 | 1 | 1 | 91 | 745 | 836 | 5.44e-20 | 83.2 |
Msa1009280 | MtrunA17_Chr7g0219621 | 62.500 | 64 | 23 | 1 | 1 | 64 | 156 | 218 | 6.13e-20 | 80.1 |
Msa1009280 | MtrunA17_Chr6g0455321 | 51.852 | 54 | 26 | 0 | 1 | 54 | 765 | 818 | 1.21e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009280 | AT3G51550.1 | 38.144 | 97 | 51 | 3 | 1 | 88 | 765 | 861 | 8.55e-11 | 57.4 |
Find 15 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCAAGTCTTCGTCTTCACT+CGG | 0.438059 | 7_1:-10515729 | Msa1009280:CDS |
GTTTGTTGGCACTAAGGAAA+AGG | 0.454452 | 7_1:-10516411 | Msa1009280:CDS |
TAGTAAGTTTGTTGGCACTA+AGG | 0.466290 | 7_1:-10516417 | Msa1009280:CDS |
GAGGAGGATAGTAAGTTTGT+TGG | 0.466467 | 7_1:-10516425 | Msa1009280:CDS |
TTGGGCTGTTTGCATGATGA+TGG | 0.485327 | 7_1:-10516515 | Msa1009280:CDS |
ATTAGAGTTTGCATTGCAGT+TGG | 0.491251 | 7_1:-10516456 | Msa1009280:CDS |
CCCGAGTGAAGACGAAGACT+TGG | 0.502650 | 7_1:+10515728 | None:intergenic |
TGTCGATGAGTGATGTTGTT+GGG | 0.555331 | 7_1:-10516481 | Msa1009280:CDS |
AAAAGGAAAAGAGTGAGCAA+AGG | 0.564346 | 7_1:-10516394 | Msa1009280:CDS |
CCAAGTCTTCGTCTTCACTC+GGG | 0.568127 | 7_1:-10515728 | Msa1009280:CDS |
AATTAAAGAACAATATCAAG+TGG | 0.587386 | 7_1:+10515702 | None:intergenic |
ATGTCGATGAGTGATGTTGT+TGG | 0.617473 | 7_1:-10516482 | Msa1009280:CDS |
GCAGTTGGAGATGAGTGAGG+AGG | 0.681127 | 7_1:-10516441 | Msa1009280:CDS |
ATTGCAGTTGGAGATGAGTG+AGG | 0.730101 | 7_1:-10516444 | Msa1009280:CDS |
TGCATGATGATGGAAATCAA+CGG | 0.754214 | 7_1:-10516505 | Msa1009280:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAAATGTTATTTTCAAA+TGG | - | chr7_1:10515745-10515764 | Msa1009280:intron | 10.0% |
!!! | TTTAAAATGTTATTTTCAAA+TGG | - | chr7_1:10515745-10515764 | Msa1009280:intron | 10.0% |
!! | ATTGATGAAATATACTTAAG+CGG | + | chr7_1:10516224-10516243 | None:intergenic | 20.0% |
!! | TAATACCTTTAATCTTTGTT+CGG | + | chr7_1:10516247-10516266 | None:intergenic | 20.0% |
!!! | CAAAATGTCTTCTTTTAAAT+AGG | + | chr7_1:10516474-10516493 | None:intergenic | 20.0% |
!!! | CTATTTAAAAGAAGACATTT+TGG | - | chr7_1:10516472-10516491 | Msa1009280:CDS | 20.0% |
!! | ATTGATGAAATATACTTAAG+CGG | + | chr7_1:10516224-10516243 | None:intergenic | 20.0% |
!! | TAATACCTTTAATCTTTGTT+CGG | + | chr7_1:10516247-10516266 | None:intergenic | 20.0% |
!!! | CAAAATGTCTTCTTTTAAAT+AGG | + | chr7_1:10516474-10516493 | None:intergenic | 20.0% |
!!! | CTATTTAAAAGAAGACATTT+TGG | - | chr7_1:10516472-10516491 | Msa1009280:CDS | 20.0% |
!! | TCATAGAATCTTTTATGAAC+GGG | + | chr7_1:10515715-10515734 | None:intergenic | 25.0% |
!! | GTCATAGAATCTTTTATGAA+CGG | + | chr7_1:10515716-10515735 | None:intergenic | 25.0% |
!!! | ATGTTATTTTCAAATGGTGT+TGG | - | chr7_1:10515751-10515770 | Msa1009280:intron | 25.0% |
!!! | TGTTATTTTCAAATGGTGTT+GGG | - | chr7_1:10515752-10515771 | Msa1009280:intron | 25.0% |
! | AAATTACTTGTTCCATTGTT+TGG | + | chr7_1:10516108-10516127 | None:intergenic | 25.0% |
! | AAGTGGAATGAATAGAAATA+GGG | + | chr7_1:10516187-10516206 | None:intergenic | 25.0% |
! | AAAGTGGAATGAATAGAAAT+AGG | + | chr7_1:10516188-10516207 | None:intergenic | 25.0% |
! | TATACTTAAGCGGAATATAA+CGG | + | chr7_1:10516214-10516233 | None:intergenic | 25.0% |
!! | GCTTATAATTCAGCAATTTT+AGG | - | chr7_1:10516308-10516327 | Msa1009280:intron | 25.0% |
! | TAAGATACTTATAACTGTCA+CGG | + | chr7_1:10516507-10516526 | None:intergenic | 25.0% |
!! | TCATAGAATCTTTTATGAAC+GGG | + | chr7_1:10515715-10515734 | None:intergenic | 25.0% |
!! | GTCATAGAATCTTTTATGAA+CGG | + | chr7_1:10515716-10515735 | None:intergenic | 25.0% |
!!! | ATGTTATTTTCAAATGGTGT+TGG | - | chr7_1:10515751-10515770 | Msa1009280:intron | 25.0% |
!!! | TGTTATTTTCAAATGGTGTT+GGG | - | chr7_1:10515752-10515771 | Msa1009280:intron | 25.0% |
! | AAATTACTTGTTCCATTGTT+TGG | + | chr7_1:10516108-10516127 | None:intergenic | 25.0% |
! | AAGTGGAATGAATAGAAATA+GGG | + | chr7_1:10516187-10516206 | None:intergenic | 25.0% |
! | AAAGTGGAATGAATAGAAAT+AGG | + | chr7_1:10516188-10516207 | None:intergenic | 25.0% |
! | TATACTTAAGCGGAATATAA+CGG | + | chr7_1:10516214-10516233 | None:intergenic | 25.0% |
!! | GCTTATAATTCAGCAATTTT+AGG | - | chr7_1:10516308-10516327 | Msa1009280:intron | 25.0% |
! | TAAGATACTTATAACTGTCA+CGG | + | chr7_1:10516507-10516526 | None:intergenic | 25.0% |
! | TTGTCACATTTTACTGATGA+AGG | - | chr7_1:10515920-10515939 | Msa1009280:intron | 30.0% |
! | TGTCACATTTTACTGATGAA+GGG | - | chr7_1:10515921-10515940 | Msa1009280:intron | 30.0% |
! | TTCTTCAGTTCTGATTGAAT+TGG | + | chr7_1:10515996-10516015 | None:intergenic | 30.0% |
CACTATATAGCAGAAAACAA+AGG | + | chr7_1:10516022-10516041 | None:intergenic | 30.0% | |
TCCATTGTTTGGAAAATGAA+CGG | + | chr7_1:10516097-10516116 | None:intergenic | 30.0% | |
AGTGTTTGAGTATTATACGA+TGG | + | chr7_1:10516139-10516158 | None:intergenic | 30.0% | |
ATCGTATAATACTCAAACAC+TGG | - | chr7_1:10516138-10516157 | Msa1009280:intron | 30.0% | |
TCAATCCGAACAAAGATTAA+AGG | - | chr7_1:10516239-10516258 | Msa1009280:intron | 30.0% | |
!! | TTAATTTGTCACCACATTCA+GGG | + | chr7_1:10516429-10516448 | None:intergenic | 30.0% |
TGGTGACAAATTAACGAAAA+CGG | - | chr7_1:10516435-10516454 | Msa1009280:CDS | 30.0% | |
!!! | GTGAAGTCTTTGGAATATTT+TGG | + | chr7_1:10516538-10516557 | None:intergenic | 30.0% |
! | TTGTCACATTTTACTGATGA+AGG | - | chr7_1:10515920-10515939 | Msa1009280:intron | 30.0% |
! | TGTCACATTTTACTGATGAA+GGG | - | chr7_1:10515921-10515940 | Msa1009280:intron | 30.0% |
! | TTCTTCAGTTCTGATTGAAT+TGG | + | chr7_1:10515996-10516015 | None:intergenic | 30.0% |
CACTATATAGCAGAAAACAA+AGG | + | chr7_1:10516022-10516041 | None:intergenic | 30.0% | |
TCCATTGTTTGGAAAATGAA+CGG | + | chr7_1:10516097-10516116 | None:intergenic | 30.0% | |
AGTGTTTGAGTATTATACGA+TGG | + | chr7_1:10516139-10516158 | None:intergenic | 30.0% | |
ATCGTATAATACTCAAACAC+TGG | - | chr7_1:10516138-10516157 | Msa1009280:intron | 30.0% | |
TCAATCCGAACAAAGATTAA+AGG | - | chr7_1:10516239-10516258 | Msa1009280:intron | 30.0% | |
!! | TTAATTTGTCACCACATTCA+GGG | + | chr7_1:10516429-10516448 | None:intergenic | 30.0% |
TGGTGACAAATTAACGAAAA+CGG | - | chr7_1:10516435-10516454 | Msa1009280:CDS | 30.0% | |
!!! | GTGAAGTCTTTGGAATATTT+TGG | + | chr7_1:10516538-10516557 | None:intergenic | 30.0% |
!! | TGCATGATGATGGAAATCAA+CGG | - | chr7_1:10515780-10515799 | Msa1009280:intron | 35.0% |
ATTAGAGTTTGCATTGCAGT+TGG | - | chr7_1:10515829-10515848 | Msa1009280:intron | 35.0% | |
!! | TAGTAAGTTTGTTGGCACTA+AGG | - | chr7_1:10515868-10515887 | Msa1009280:intron | 35.0% |
AAAAGGAAAAGAGTGAGCAA+AGG | - | chr7_1:10515891-10515910 | Msa1009280:intron | 35.0% | |
! | TTCAGTTCTGATTGAATTGG+TGG | + | chr7_1:10515993-10516012 | None:intergenic | 35.0% |
! | TCCGTTCATTTTCCAAACAA+TGG | - | chr7_1:10516093-10516112 | Msa1009280:intron | 35.0% |
TGGAATGAATAGAAATAGGG+CGG | + | chr7_1:10516184-10516203 | None:intergenic | 35.0% | |
! | CGGAATATAACGGAATAAAG+TGG | + | chr7_1:10516204-10516223 | None:intergenic | 35.0% |
!! | GTTAATTTGTCACCACATTC+AGG | + | chr7_1:10516430-10516449 | None:intergenic | 35.0% |
!! | TGCATGATGATGGAAATCAA+CGG | - | chr7_1:10515780-10515799 | Msa1009280:intron | 35.0% |
ATTAGAGTTTGCATTGCAGT+TGG | - | chr7_1:10515829-10515848 | Msa1009280:intron | 35.0% | |
!! | TAGTAAGTTTGTTGGCACTA+AGG | - | chr7_1:10515868-10515887 | Msa1009280:intron | 35.0% |
AAAAGGAAAAGAGTGAGCAA+AGG | - | chr7_1:10515891-10515910 | Msa1009280:intron | 35.0% | |
! | TTCAGTTCTGATTGAATTGG+TGG | + | chr7_1:10515993-10516012 | None:intergenic | 35.0% |
! | TCCGTTCATTTTCCAAACAA+TGG | - | chr7_1:10516093-10516112 | Msa1009280:intron | 35.0% |
TGGAATGAATAGAAATAGGG+CGG | + | chr7_1:10516184-10516203 | None:intergenic | 35.0% | |
! | CGGAATATAACGGAATAAAG+TGG | + | chr7_1:10516204-10516223 | None:intergenic | 35.0% |
!! | GTTAATTTGTCACCACATTC+AGG | + | chr7_1:10516430-10516449 | None:intergenic | 35.0% |
ATGTCGATGAGTGATGTTGT+TGG | - | chr7_1:10515803-10515822 | Msa1009280:intron | 40.0% | |
TGTCGATGAGTGATGTTGTT+GGG | - | chr7_1:10515804-10515823 | Msa1009280:intron | 40.0% | |
GAGGAGGATAGTAAGTTTGT+TGG | - | chr7_1:10515860-10515879 | Msa1009280:intron | 40.0% | |
! | GTTTGTTGGCACTAAGGAAA+AGG | - | chr7_1:10515874-10515893 | Msa1009280:intron | 40.0% |
! | ACAAGTAGTAGTGATGACGA+TGG | - | chr7_1:10515959-10515978 | Msa1009280:intron | 40.0% |
TGAATAGAAATAGGGCGGAA+TGG | + | chr7_1:10516179-10516198 | None:intergenic | 40.0% | |
!! | ACTTGGTGCAATAATCGGTA+GGG | + | chr7_1:10516272-10516291 | None:intergenic | 40.0% |
! | TACCGATTATTGCACCAAGT+GGG | - | chr7_1:10516272-10516291 | Msa1009280:intron | 40.0% |
ATGTCGATGAGTGATGTTGT+TGG | - | chr7_1:10515803-10515822 | Msa1009280:intron | 40.0% | |
TGTCGATGAGTGATGTTGTT+GGG | - | chr7_1:10515804-10515823 | Msa1009280:intron | 40.0% | |
GAGGAGGATAGTAAGTTTGT+TGG | - | chr7_1:10515860-10515879 | Msa1009280:intron | 40.0% | |
! | GTTTGTTGGCACTAAGGAAA+AGG | - | chr7_1:10515874-10515893 | Msa1009280:intron | 40.0% |
! | ACAAGTAGTAGTGATGACGA+TGG | - | chr7_1:10515959-10515978 | Msa1009280:intron | 40.0% |
TGAATAGAAATAGGGCGGAA+TGG | + | chr7_1:10516179-10516198 | None:intergenic | 40.0% | |
!! | ACTTGGTGCAATAATCGGTA+GGG | + | chr7_1:10516272-10516291 | None:intergenic | 40.0% |
! | TACCGATTATTGCACCAAGT+GGG | - | chr7_1:10516272-10516291 | Msa1009280:intron | 40.0% |
TTGGGCTGTTTGCATGATGA+TGG | - | chr7_1:10515770-10515789 | Msa1009280:intron | 45.0% | |
ATTGCAGTTGGAGATGAGTG+AGG | - | chr7_1:10515841-10515860 | Msa1009280:intron | 45.0% | |
!! | CACTTGGTGCAATAATCGGT+AGG | + | chr7_1:10516273-10516292 | None:intergenic | 45.0% |
! | CTACCGATTATTGCACCAAG+TGG | - | chr7_1:10516271-10516290 | Msa1009280:intron | 45.0% |
!! | GTCCCACTTGGTGCAATAAT+CGG | + | chr7_1:10516277-10516296 | None:intergenic | 45.0% |
! | CTTTTCATTCGTGTCCCACT+TGG | + | chr7_1:10516289-10516308 | None:intergenic | 45.0% |
!! | CGAAGACTTGGTGAAGTCTT+TGG | + | chr7_1:10516548-10516567 | None:intergenic | 45.0% |
ACCAAGTCTTCGTCTTCACT+CGG | - | chr7_1:10516556-10516575 | Msa1009280:CDS | 45.0% | |
TTGGGCTGTTTGCATGATGA+TGG | - | chr7_1:10515770-10515789 | Msa1009280:intron | 45.0% | |
ATTGCAGTTGGAGATGAGTG+AGG | - | chr7_1:10515841-10515860 | Msa1009280:intron | 45.0% | |
!! | CACTTGGTGCAATAATCGGT+AGG | + | chr7_1:10516273-10516292 | None:intergenic | 45.0% |
! | CTACCGATTATTGCACCAAG+TGG | - | chr7_1:10516271-10516290 | Msa1009280:intron | 45.0% |
!! | GTCCCACTTGGTGCAATAAT+CGG | + | chr7_1:10516277-10516296 | None:intergenic | 45.0% |
! | CTTTTCATTCGTGTCCCACT+TGG | + | chr7_1:10516289-10516308 | None:intergenic | 45.0% |
!! | CGAAGACTTGGTGAAGTCTT+TGG | + | chr7_1:10516548-10516567 | None:intergenic | 45.0% |
ACCAAGTCTTCGTCTTCACT+CGG | - | chr7_1:10516556-10516575 | Msa1009280:CDS | 45.0% | |
TAGTTGTCCTGCCCTGAATG+TGG | - | chr7_1:10516415-10516434 | Msa1009280:CDS | 50.0% | |
TTTGTCACCACATTCAGGGC+AGG | + | chr7_1:10516425-10516444 | None:intergenic | 50.0% | |
CCAAGTCTTCGTCTTCACTC+GGG | - | chr7_1:10516557-10516576 | Msa1009280:CDS | 50.0% | |
TAGTTGTCCTGCCCTGAATG+TGG | - | chr7_1:10516415-10516434 | Msa1009280:CDS | 50.0% | |
TTTGTCACCACATTCAGGGC+AGG | + | chr7_1:10516425-10516444 | None:intergenic | 50.0% | |
CCAAGTCTTCGTCTTCACTC+GGG | - | chr7_1:10516557-10516576 | Msa1009280:CDS | 50.0% | |
GCAGTTGGAGATGAGTGAGG+AGG | - | chr7_1:10515844-10515863 | Msa1009280:intron | 55.0% | |
CCCGAGTGAAGACGAAGACT+TGG | + | chr7_1:10516560-10516579 | None:intergenic | 55.0% | |
GCAGTTGGAGATGAGTGAGG+AGG | - | chr7_1:10515844-10515863 | Msa1009280:intron | 55.0% | |
CCCGAGTGAAGACGAAGACT+TGG | + | chr7_1:10516560-10516579 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 10515704 | 10516603 | 10515704 | ID=Msa1009280;Name=Msa1009280 |
chr7_1 | mRNA | 10515704 | 10516603 | 10515704 | ID=Msa1009280-mRNA-1;Parent=Msa1009280;Name=Msa1009280-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0|0|0.5|0|0|2|0|97 |
chr7_1 | exon | 10516363 | 10516603 | 10516363 | ID=Msa1009280-mRNA-1:exon:2863;Parent=Msa1009280-mRNA-1 |
chr7_1 | exon | 10515704 | 10515756 | 10515704 | ID=Msa1009280-mRNA-1:exon:2862;Parent=Msa1009280-mRNA-1 |
chr7_1 | CDS | 10516363 | 10516603 | 10516363 | ID=Msa1009280-mRNA-1:cds;Parent=Msa1009280-mRNA-1 |
chr7_1 | CDS | 10515704 | 10515756 | 10515704 | ID=Msa1009280-mRNA-1:cds;Parent=Msa1009280-mRNA-1 |
Gene Sequence |
Protein sequence |