AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0911910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0911910 MtrunA17_Chr4g0061511 92.545 389 18 1 2 379 3 391 0.0 744
Msa0911910 MtrunA17_Chr5g0445151 26.801 347 199 15 44 363 37 355 1.18e-16 81.6
Msa0911910 MtrunA17_Chr5g0445151 21.538 325 211 9 47 352 358 657 4.25e-13 70.9
Msa0911910 MtrunA17_Chr3g0100611 25.153 326 202 12 37 343 29 331 4.37e-14 73.9
Msa0911910 MtrunA17_Chr2g0304791 27.046 281 168 11 82 349 13 269 3.17e-12 68.2
Msa0911910 MtrunA17_Chr4g0074331 24.012 329 192 13 43 349 62 354 5.90e-12 67.4
Msa0911910 MtrunA17_Chr4g0074331 24.405 336 195 15 47 357 374 675 2.54e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0911910 AT1G74210.1 70.284 387 103 2 4 378 3 389 0.0 560
Msa0911910 AT5G08030.1 73.011 352 84 1 16 356 16 367 0.0 541
Msa0911910 AT5G08030.2 73.011 352 84 1 16 356 31 382 0.0 540
Msa0911910 AT5G58050.1 26.730 318 190 11 43 343 40 331 1.39e-14 75.9
Msa0911910 AT4G26690.1 22.152 316 202 10 47 343 363 653 5.67e-14 73.9
Msa0911910 AT1G66970.1 22.540 315 203 9 47 343 369 660 1.17e-13 73.2
Msa0911910 AT1G66970.2 21.975 314 206 8 47 343 391 682 1.29e-13 72.8
Msa0911910 AT1G66970.3 21.975 314 206 8 47 343 175 466 1.47e-13 72.4
Msa0911910 AT3G20520.1 21.166 326 218 10 47 352 340 646 1.29e-12 69.7
Msa0911910 AT5G55480.1 19.578 332 227 9 47 360 368 677 4.69e-12 68.2

Find 90 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGTTGATTTCACATTAA+AGG 0.140506 6_2:+19366824 Msa0911910:intron
CCCCTATGTGCAACATTATA+TGG 0.166445 6_2:-19365985 None:intergenic
TCGTTGCTTGCCGCGGAAAT+AGG 0.171136 6_2:-19365001 None:intergenic
TGAATCAGAGGTTCTGCTTT+AGG 0.244144 6_2:+19366865 Msa0911910:CDS
GTTGAAACACTTCGGAAATA+TGG 0.255128 6_2:+19367380 Msa0911910:CDS
TGATTACTGGATCAACAAAA+TGG 0.274727 6_2:+19368167 Msa0911910:CDS
AAGCAATATGTTGTAGGAAT+TGG 0.302113 6_2:+19367784 Msa0911910:CDS
GTATCGTAGGAACGTGAAAA+TGG 0.309244 6_2:-19365037 None:intergenic
TATCTCAATGTCTTCGTTAT+CGG 0.318763 6_2:+19365124 Msa0911910:exon
GAATCAGAGGTTCTGCTTTA+GGG 0.329665 6_2:+19366866 Msa0911910:CDS
ACATATAAGAACACCATCTT+TGG 0.329743 6_2:-19366215 None:intergenic
AGAAACTCGCGAGGCATATC+TGG 0.353981 6_2:+19366029 Msa0911910:CDS
TATGCCTCGCGAGTTTCTTC+AGG 0.363128 6_2:-19366024 None:intergenic
ATCTCAATGTCTTCGTTATC+GGG 0.369178 6_2:+19365125 Msa0911910:exon
GTCTTGTCATCTTGACGGTT+AGG 0.375474 6_2:-19368252 None:intergenic
CTTACAAGGAGTATGATTAC+TGG 0.378731 6_2:+19368154 Msa0911910:CDS
ATGATTATGTGCAGTCATAT+TGG 0.381861 6_2:+19367728 Msa0911910:intron
AGGCCTTTGTATCCACTTCC+TGG 0.386639 6_2:+19365919 Msa0911910:CDS
CTCCTTCGGATCTTGTTGCC+AGG 0.391688 6_2:+19367854 Msa0911910:CDS
CCCATATAATGTTGCACATA+GGG 0.393792 6_2:+19365984 Msa0911910:CDS
GATATATACACAAGTGAAGT+TGG 0.401531 6_2:-19367467 None:intergenic
TGATTATGTGCAGTCATATT+GGG 0.403241 6_2:+19367729 Msa0911910:intron
ATCAACAAAATGGGAATTGA+TGG 0.404261 6_2:+19368177 Msa0911910:CDS
CGTTGCTTGCCGCGGAAATA+GGG 0.406739 6_2:-19365000 None:intergenic
GATATAAATAACAGGTGAAA+TGG 0.409069 6_2:+19367327 Msa0911910:intron
TTGGATGCACCCAGAGTTGT+TGG 0.424638 6_2:+19367114 Msa0911910:CDS
TCTTGTCATCTTGACGGTTA+GGG 0.433302 6_2:-19368251 None:intergenic
TACATAAAGCAATATGTTGT+AGG 0.433660 6_2:+19367778 Msa0911910:CDS
TTTAGGGATCAACAGTTTAA+CGG 0.438221 6_2:+19366882 Msa0911910:CDS
GTTGCACATAGGGGCTCAAA+TGG 0.441895 6_2:+19365994 Msa0911910:CDS
CAAGTATTTGACGACTCCTT+CGG 0.443084 6_2:+19367840 Msa0911910:CDS
TCCCAGTGAAATCTGTAAAC+AGG 0.445980 6_2:-19368200 None:intergenic
AGGATATATTCCAACAACTC+TGG 0.460634 6_2:-19367124 None:intergenic
CAGTAATCATACTCCTTGTA+AGG 0.464985 6_2:-19368153 None:intergenic
CCCTATGTGCAACATTATAT+GGG 0.468950 6_2:-19365984 None:intergenic
CTTCCATGGTCACCTTTGCC+AGG 0.470270 6_2:-19365937 None:intergenic
GAAGAGGCTGCTTACTTCCA+TGG 0.474342 6_2:-19365951 None:intergenic
ATGCAGTCTTGTCATCTTGA+CGG 0.475282 6_2:-19368257 None:intergenic
CATATTGCTTTATGTAGTCT+AGG 0.476260 6_2:-19367771 None:intergenic
GTCGAAGGGGTCAATATCAC+TGG 0.477120 6_2:+19366316 Msa0911910:CDS
GTCGGACGGCAAACGATTTG+AGG 0.480583 6_2:+19367349 Msa0911910:CDS
AGAGTTCATTACCATAGCAT+TGG 0.485013 6_2:+19367095 Msa0911910:CDS
TGGTCACCTTTGCCAGGAAG+TGG 0.486182 6_2:-19365931 None:intergenic
GATTACTGGATCAACAAAAT+GGG 0.486674 6_2:+19368168 Msa0911910:CDS
GTCAACACAAGACACTAATC+AGG 0.497899 6_2:+19367538 Msa0911910:CDS
GGCCTGTTTACAGATTTCAC+TGG 0.506585 6_2:+19368198 Msa0911910:CDS
ACATGCTGATTGATATGTAC+TGG 0.506695 6_2:-19367159 None:intergenic
GATATATTATCTTCCAAAGA+TGG 0.509816 6_2:+19366202 Msa0911910:CDS
TGTGTATATATCAAATCAAA+CGG 0.510034 6_2:+19367478 Msa0911910:CDS
TTGTTAAGTCTTCGTATCGT+AGG 0.517971 6_2:-19365050 None:intergenic
GGATATATTCCAACAACTCT+GGG 0.526903 6_2:-19367123 None:intergenic
ACTTCGGAAATATGGATACA+AGG 0.529530 6_2:+19367388 Msa0911910:CDS
TGTAGGAATTGGACCTTGGA+AGG 0.532490 6_2:+19367795 Msa0911910:CDS
TCCTTCGGATCTTGTTGCCA+GGG 0.533302 6_2:+19367855 Msa0911910:CDS
CTTTAGTCAAGATCCTTACA+AGG 0.536799 6_2:+19368140 Msa0911910:CDS
GCCTGTTTACAGATTTCACT+GGG 0.542364 6_2:+19368199 Msa0911910:CDS
ATTAAAGTCGTTGCTTGCCG+CGG 0.544151 6_2:-19365008 None:intergenic
GTCAAATACTTGTTAACCAC+AGG 0.545080 6_2:-19367829 None:intergenic
TTGTATCCACTTCCTGGCAA+AGG 0.547465 6_2:+19365925 Msa0911910:CDS
GTTCATACCTGTCAAAACAT+TGG 0.548979 6_2:+19367411 Msa0911910:CDS
ACAAGTTTGTTGAAACACTT+CGG 0.549529 6_2:+19367372 Msa0911910:CDS
GGCACATGCTCATAATCTGC+AGG 0.551055 6_2:+19367876 Msa0911910:CDS
GCCCATATAATGTTGCACAT+AGG 0.560744 6_2:+19365983 Msa0911910:CDS
AAAAGAACATATGAAGTCGA+AGG 0.561446 6_2:+19366301 Msa0911910:CDS
GCTGTGTTCCTCACTCACTC+AGG 0.561455 6_2:-19365076 None:intergenic
TTGCAGAGAGCTATTGAGGA+AGG 0.565109 6_2:+19366160 Msa0911910:intron
AAAGAACATATGAAGTCGAA+GGG 0.565876 6_2:+19366302 Msa0911910:CDS
TAAATAACAGGTGAAATGGT+CGG 0.572543 6_2:+19367331 Msa0911910:intron
TCTGGGTGCATCCAATGCTA+TGG 0.574074 6_2:-19367106 None:intergenic
CAGATTATGAGCATGTGCCC+TGG 0.581110 6_2:-19367872 None:intergenic
CTTCCTGGCAAAGGTGACCA+TGG 0.581158 6_2:+19365934 Msa0911910:CDS
TATGGGCGAAAAGTTTGAAG+AGG 0.590205 6_2:-19365967 None:intergenic
CCATATAATGTTGCACATAG+GGG 0.593232 6_2:+19365985 Msa0911910:CDS
AACAATGACCTGAGTGAGTG+AGG 0.601263 6_2:+19365068 Msa0911910:five_prime_UTR
GCAAATGACTGTATAAATGC+AGG 0.604021 6_2:-19367443 None:intergenic
ATGTTGTAGGAATTGGACCT+TGG 0.610872 6_2:+19367791 Msa0911910:CDS
AGTCGCTGAGGGTGAATCAG+AGG 0.615291 6_2:+19366853 Msa0911910:CDS
AAAGGAATTAAAGTCGCTGA+GGG 0.619575 6_2:+19366842 Msa0911910:CDS
TAAAGGAATTAAAGTCGCTG+AGG 0.621868 6_2:+19366841 Msa0911910:CDS
TTTCTATTGCTCGTGATTGG+GGG 0.629901 6_2:+19365889 Msa0911910:CDS
CTTCGGAAATATGGATACAA+GGG 0.630595 6_2:+19367389 Msa0911910:CDS
GAAGGATACTATAGTACCTG+TGG 0.635202 6_2:+19367813 Msa0911910:CDS
GGTACTATAGTATCCTTCCA+AGG 0.636568 6_2:-19367808 None:intergenic
TAACAGGTGAAATGGTCGGA+CGG 0.639574 6_2:+19367335 Msa0911910:intron
GCCCTGGCAACAAGATCCGA+AGG 0.642209 6_2:-19367856 None:intergenic
TAATGTGGACCCTATTTCCG+CGG 0.648966 6_2:+19364991 None:intergenic
TTGCCAGGAAGTGGATACAA+AGG 0.653361 6_2:-19365922 None:intergenic
TATTATCAAGAATAAAGTCG+TGG 0.657370 6_2:-19366240 None:intergenic
ACTTCCTGAAGAAACTCGCG+AGG 0.669064 6_2:+19366020 Msa0911910:CDS
AAGAACATATGAAGTCGAAG+GGG 0.698335 6_2:+19366303 Msa0911910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAAATATTATAATT+TGG - chr6_2:19366125-19366144 None:intergenic 0.0%
!! AACTGTATATATATATATAT+AGG + chr6_2:19365425-19365444 Msa0911910:intron 10.0%
!! ACTGTATATATATATATATA+GGG + chr6_2:19365426-19365445 Msa0911910:intron 10.0%
!! GCTATATATATATATATATA+TGG - chr6_2:19365695-19365714 None:intergenic 10.0%
!! TATATATATATATATATAGC+TGG + chr6_2:19365695-19365714 Msa0911910:intron 10.0%
!! ATTAAATTGATATAAATAAC+AGG + chr6_2:19367319-19367338 Msa0911910:intron 10.0%
!! CTGTATATATATATATATAG+GGG + chr6_2:19365427-19365446 Msa0911910:intron 15.0%
!! TGTTTATAATAGAAAAACAT+GGG - chr6_2:19365528-19365547 None:intergenic 15.0%
!! TTGTTTATAATAGAAAAACA+TGG - chr6_2:19365529-19365548 None:intergenic 15.0%
!! AACAAGTGAAAAATAAATGA+AGG - chr6_2:19365357-19365376 None:intergenic 20.0%
!! TAAAGTTTAATAGAGACAAA+AGG + chr6_2:19365591-19365610 Msa0911910:intron 20.0%
!! AAAGTTTAATAGAGACAAAA+GGG + chr6_2:19365592-19365611 Msa0911910:intron 20.0%
!! TTAGTTAGTAAGTATGAAAA+TGG + chr6_2:19365739-19365758 Msa0911910:intron 20.0%
!! ATTTCCTTCGTAAAATATAT+TGG + chr6_2:19366385-19366404 Msa0911910:intron 20.0%
!! TTTCCTTCGTAAAATATATT+GGG + chr6_2:19366386-19366405 Msa0911910:intron 20.0%
!! AATGGTAACTCAATAAATTA+AGG - chr6_2:19366606-19366625 None:intergenic 20.0%
!!! TAGACGTATTTCTTAATTTT+AGG + chr6_2:19366636-19366655 Msa0911910:intron 20.0%
!!! AGACGTATTTCTTAATTTTA+GGG + chr6_2:19366637-19366656 Msa0911910:intron 20.0%
!! TGTGTATATATCAAATCAAA+CGG + chr6_2:19367478-19367497 Msa0911910:CDS 20.0%
!!! TCATCGATTAAAAAAATCTT+AGG - chr6_2:19367509-19367528 None:intergenic 20.0%
!! CAACATTGTATAACATTAAA+CGG - chr6_2:19367654-19367673 None:intergenic 20.0%
!!! CATTACAGTAATATTTTGTT+AGG - chr6_2:19367711-19367730 None:intergenic 20.0%
! ATGAAAAGTGAAACATTTGA+AGG - chr6_2:19365231-19365250 None:intergenic 25.0%
!!! TCTGCTTTTATCACTAATTT+CGG + chr6_2:19365296-19365315 Msa0911910:intron 25.0%
!!! TGTTTTGGTAAATAACTAGT+AGG - chr6_2:19365505-19365524 None:intergenic 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG + chr6_2:19365615-19365634 Msa0911910:intron 25.0%
! TTAGTAAGTATGAAAATGGT+TGG + chr6_2:19365743-19365762 Msa0911910:intron 25.0%
! TGAAATCATAAATGTAACCT+AGG + chr6_2:19365850-19365869 Msa0911910:intron 25.0%
! GATATATTATCTTCCAAAGA+TGG + chr6_2:19366202-19366221 Msa0911910:CDS 25.0%
! TATTATCAAGAATAAAGTCG+TGG - chr6_2:19366243-19366262 None:intergenic 25.0%
!!! AATATCACTGGATTTTTTGT+CGG + chr6_2:19366328-19366347 Msa0911910:CDS 25.0%
!!! AAGACGTTTTATTTCTCAAT+AGG + chr6_2:19366664-19366683 Msa0911910:intron 25.0%
! AAAGAATGGAATAATGTTTC+TGG - chr6_2:19366734-19366753 None:intergenic 25.0%
! ACATGTATAAGAGAAGAAAA+GGG - chr6_2:19366913-19366932 None:intergenic 25.0%
!!! TGAACCATTTTAAAATCTGA+CGG - chr6_2:19366945-19366964 None:intergenic 25.0%
! ATTCATACAATAAGATTGGA+GGG - chr6_2:19367269-19367288 None:intergenic 25.0%
! TCACATTCATACAATAAGAT+TGG - chr6_2:19367273-19367292 None:intergenic 25.0%
! ATCTTATTGTATGAATGTGA+TGG + chr6_2:19367273-19367292 Msa0911910:intron 25.0%
! GATATAAATAACAGGTGAAA+TGG + chr6_2:19367327-19367346 Msa0911910:intron 25.0%
!! TGAGTAATGTATTTTACCTT+TGG + chr6_2:19367561-19367580 Msa0911910:intron 25.0%
! ATCAATTTGTAGAAGAACAA+GGG - chr6_2:19367592-19367611 None:intergenic 25.0%
!! AGTAATATTTTGTTAGGCTT+TGG - chr6_2:19367705-19367724 None:intergenic 25.0%
! TACATAAAGCAATATGTTGT+AGG + chr6_2:19367778-19367797 Msa0911910:CDS 25.0%
! TAATCATATGAAGAGAAACA+AGG - chr6_2:19367920-19367939 None:intergenic 25.0%
!! AGCAATTTTATGTAATAGCT+CGG - chr6_2:19368283-19368302 None:intergenic 25.0%
TATCTCAATGTCTTCGTTAT+CGG + chr6_2:19365124-19365143 Msa0911910:exon 30.0%
AGAATCTATCTAAGTTATGC+AGG + chr6_2:19365168-19365187 Msa0911910:intron 30.0%
AAATAAATGAAGGCAAGGTA+AGG - chr6_2:19365347-19365366 None:intergenic 30.0%
GTGAAAAATAAATGAAGGCA+AGG - chr6_2:19365352-19365371 None:intergenic 30.0%
! ATAGAAAAACATGGGTGTTT+TGG - chr6_2:19365520-19365539 None:intergenic 30.0%
! TATATAGCTGGCTTATTATC+AGG + chr6_2:19365707-19365726 Msa0911910:intron 30.0%
ATGATTTCATACACCAAGTT+AGG - chr6_2:19365839-19365858 None:intergenic 30.0%
ACGAGCAATAGAAAAACAAA+AGG - chr6_2:19365883-19365902 None:intergenic 30.0%
! TTTTTCTATTGCTCGTGATT+GGG + chr6_2:19365887-19365906 Msa0911910:CDS 30.0%
CAGATGTAAAGTAATGAGAA+AGG - chr6_2:19366089-19366108 None:intergenic 30.0%
ACATATAAGAACACCATCTT+TGG - chr6_2:19366218-19366237 None:intergenic 30.0%
AAAAGAACATATGAAGTCGA+AGG + chr6_2:19366301-19366320 Msa0911910:CDS 30.0%
AAAGAACATATGAAGTCGAA+GGG + chr6_2:19366302-19366321 Msa0911910:CDS 30.0%
TACGTCTATACAAAGCAAAA+TGG - chr6_2:19366624-19366643 None:intergenic 30.0%
GAAAAAACTGGATGAAAGAA+TGG - chr6_2:19366748-19366767 None:intergenic 30.0%
CTTGAAAGTGATGAAAAAAC+TGG - chr6_2:19366760-19366779 None:intergenic 30.0%
! TGCAGTTGATTTCACATTAA+AGG + chr6_2:19366824-19366843 Msa0911910:intron 30.0%
TTTAGGGATCAACAGTTTAA+CGG + chr6_2:19366882-19366901 Msa0911910:CDS 30.0%
CACATGTATAAGAGAAGAAA+AGG - chr6_2:19366914-19366933 None:intergenic 30.0%
!! GGTTCAAAGATCATTTTTAC+TGG + chr6_2:19366959-19366978 Msa0911910:intron 30.0%
TAAGTCTATTGCCTTATCTT+TGG + chr6_2:19367035-19367054 Msa0911910:intron 30.0%
TGAAAGAGATTCCAAAGATA+AGG - chr6_2:19367049-19367068 None:intergenic 30.0%
!! TTATCTTTGGAATCTCTTTC+AGG + chr6_2:19367048-19367067 Msa0911910:intron 30.0%
CATTCATACAATAAGATTGG+AGG - chr6_2:19367270-19367289 None:intergenic 30.0%
TAAATAACAGGTGAAATGGT+CGG + chr6_2:19367331-19367350 Msa0911910:intron 30.0%
!! ACAAGTTTGTTGAAACACTT+CGG + chr6_2:19367372-19367391 Msa0911910:CDS 30.0%
GATATATACACAAGTGAAGT+TGG - chr6_2:19367470-19367489 None:intergenic 30.0%
CATCAATTTGTAGAAGAACA+AGG - chr6_2:19367593-19367612 None:intergenic 30.0%
ATGATTATGTGCAGTCATAT+TGG + chr6_2:19367728-19367747 Msa0911910:intron 30.0%
TGATTATGTGCAGTCATATT+GGG + chr6_2:19367729-19367748 Msa0911910:intron 30.0%
CATATTGCTTTATGTAGTCT+AGG - chr6_2:19367774-19367793 None:intergenic 30.0%
AAGCAATATGTTGTAGGAAT+TGG + chr6_2:19367784-19367803 Msa0911910:CDS 30.0%
TAAAGTTGAAATGCAAACAC+TGG - chr6_2:19368125-19368144 None:intergenic 30.0%
TGATTACTGGATCAACAAAA+TGG + chr6_2:19368167-19368186 Msa0911910:CDS 30.0%
GATTACTGGATCAACAAAAT+GGG + chr6_2:19368168-19368187 Msa0911910:CDS 30.0%
ATCAACAAAATGGGAATTGA+TGG + chr6_2:19368177-19368196 Msa0911910:CDS 30.0%
!! GTCTTCATAATTTTCAGGAA+TGG + chr6_2:19368223-19368242 Msa0911910:CDS 30.0%
TTGTTAAGTCTTCGTATCGT+AGG - chr6_2:19365053-19365072 None:intergenic 35.0%
ATCTCAATGTCTTCGTTATC+GGG + chr6_2:19365125-19365144 Msa0911910:exon 35.0%
! TGAAACATTTGAAGGCATGA+AGG - chr6_2:19365223-19365242 None:intergenic 35.0%
! ACTTTTCATGAATCCCTAAC+TGG + chr6_2:19365242-19365261 Msa0911910:intron 35.0%
ACACAGATCTAATCCAGTTA+GGG - chr6_2:19365258-19365277 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - chr6_2:19365650-19365669 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG + chr6_2:19365650-19365669 Msa0911910:intron 35.0%
CAAGTTAGGAGATATTTAGC+TGG - chr6_2:19365825-19365844 None:intergenic 35.0%
CAGCTAAATATCTCCTAACT+TGG + chr6_2:19365823-19365842 Msa0911910:intron 35.0%
! AAACAAAAGGTGCAAAACCT+AGG - chr6_2:19365870-19365889 None:intergenic 35.0%
! GTTTTTCTATTGCTCGTGAT+TGG + chr6_2:19365886-19365905 Msa0911910:CDS 35.0%
! TTTTCTATTGCTCGTGATTG+GGG + chr6_2:19365888-19365907 Msa0911910:CDS 35.0%
CCCTATGTGCAACATTATAT+GGG - chr6_2:19365987-19366006 None:intergenic 35.0%
CCCATATAATGTTGCACATA+GGG + chr6_2:19365984-19366003 Msa0911910:CDS 35.0%
CCATATAATGTTGCACATAG+GGG + chr6_2:19365985-19366004 Msa0911910:CDS 35.0%
!!! TTTTTTGCAGAGAGCTATTG+AGG + chr6_2:19366156-19366175 Msa0911910:intron 35.0%
AAGAACATATGAAGTCGAAG+GGG + chr6_2:19366303-19366322 Msa0911910:CDS 35.0%
! CCTCCCAATATATTTTACGA+AGG - chr6_2:19366392-19366411 None:intergenic 35.0%
CCTTCGTAAAATATATTGGG+AGG + chr6_2:19366389-19366408 Msa0911910:intron 35.0%
!! ATTTCTAGTGACACGTATTC+TGG + chr6_2:19366471-19366490 Msa0911910:intron 35.0%
!! AATTTGTTAAGATGCCCAAG+AGG - chr6_2:19366539-19366558 None:intergenic 35.0%
CTTGGGCATCTTAACAAATT+TGG + chr6_2:19366539-19366558 Msa0911910:intron 35.0%
TAAAGGAATTAAAGTCGCTG+AGG + chr6_2:19366841-19366860 Msa0911910:CDS 35.0%
AAAGGAATTAAAGTCGCTGA+GGG + chr6_2:19366842-19366861 Msa0911910:CDS 35.0%
!! AGCTCCGTCAGATTTTAAAA+TGG + chr6_2:19366938-19366957 Msa0911910:intron 35.0%
AAACACAAGTAATCAGCAGA+CGG - chr6_2:19366987-19367006 None:intergenic 35.0%
TAGACTTAGCCATTTCAATG+CGG - chr6_2:19367023-19367042 None:intergenic 35.0%
AGAGTTCATTACCATAGCAT+TGG + chr6_2:19367095-19367114 Msa0911910:CDS 35.0%
GGATATATTCCAACAACTCT+GGG - chr6_2:19367126-19367145 None:intergenic 35.0%
AGGATATATTCCAACAACTC+TGG - chr6_2:19367127-19367146 None:intergenic 35.0%
! TGTACTGGACTTTTTATCTC+AGG - chr6_2:19367147-19367166 None:intergenic 35.0%
! ACATGCTGATTGATATGTAC+TGG - chr6_2:19367162-19367181 None:intergenic 35.0%
TTGTATGAATGTGATGGTTG+AGG + chr6_2:19367279-19367298 Msa0911910:intron 35.0%
GTTGAAACACTTCGGAAATA+TGG + chr6_2:19367380-19367399 Msa0911910:CDS 35.0%
ACTTCGGAAATATGGATACA+AGG + chr6_2:19367388-19367407 Msa0911910:CDS 35.0%
CTTCGGAAATATGGATACAA+GGG + chr6_2:19367389-19367408 Msa0911910:CDS 35.0%
GTTCATACCTGTCAAAACAT+TGG + chr6_2:19367411-19367430 Msa0911910:CDS 35.0%
!!! GTTTCAACCAATGTTTTGAC+AGG - chr6_2:19367421-19367440 None:intergenic 35.0%
GCAAATGACTGTATAAATGC+AGG - chr6_2:19367446-19367465 None:intergenic 35.0%
! GTCAAATACTTGTTAACCAC+AGG - chr6_2:19367832-19367851 None:intergenic 35.0%
!! CCACACAATCTTTTGAAGAT+TGG - chr6_2:19367953-19367972 None:intergenic 35.0%
CCAATCTTCAAAAGATTGTG+TGG + chr6_2:19367950-19367969 Msa0911910:intron 35.0%
!! ATGATTGTTGATGATGATGC+AGG + chr6_2:19368071-19368090 Msa0911910:intron 35.0%
TTCTCATTTCTGTACGTGTA+TGG - chr6_2:19368102-19368121 None:intergenic 35.0%
CTTTAGTCAAGATCCTTACA+AGG + chr6_2:19368140-19368159 Msa0911910:CDS 35.0%
CAGTAATCATACTCCTTGTA+AGG - chr6_2:19368156-19368175 None:intergenic 35.0%
! CTTACAAGGAGTATGATTAC+TGG + chr6_2:19368154-19368173 Msa0911910:CDS 35.0%
! TGGGAGTCTTCATAATTTTC+AGG + chr6_2:19368218-19368237 Msa0911910:CDS 35.0%
GTATCGTAGGAACGTGAAAA+TGG - chr6_2:19365040-19365059 None:intergenic 40.0%
GACACAGATCTAATCCAGTT+AGG - chr6_2:19365259-19365278 None:intergenic 40.0%
! TGGATTAGATCTGTGTCCAT+TGG + chr6_2:19365262-19365281 Msa0911910:intron 40.0%
! GCAGAAGCATGATATACCAA+TGG - chr6_2:19365281-19365300 None:intergenic 40.0%
GCATCCACCTAAAAACACTA+AGG + chr6_2:19365460-19365479 Msa0911910:intron 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG - chr6_2:19365653-19365672 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG + chr6_2:19365653-19365672 Msa0911910:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG + chr6_2:19365654-19365673 Msa0911910:intron 40.0%
TTTCTATTGCTCGTGATTGG+GGG + chr6_2:19365889-19365908 Msa0911910:CDS 40.0%
TATGGGCGAAAAGTTTGAAG+AGG - chr6_2:19365970-19365989 None:intergenic 40.0%
GCCCATATAATGTTGCACAT+AGG + chr6_2:19365983-19366002 Msa0911910:CDS 40.0%
CCCCTATGTGCAACATTATA+TGG - chr6_2:19365988-19366007 None:intergenic 40.0%
! TGACACGTATTCTGGAAAGT+CGG + chr6_2:19366479-19366498 Msa0911910:intron 40.0%
ACTTGTATTGAACGTCCTCT+TGG + chr6_2:19366521-19366540 Msa0911910:intron 40.0%
CTTGTATTGAACGTCCTCTT+GGG + chr6_2:19366522-19366541 Msa0911910:intron 40.0%
TGAATCAGAGGTTCTGCTTT+AGG + chr6_2:19366865-19366884 Msa0911910:CDS 40.0%
GAATCAGAGGTTCTGCTTTA+GGG + chr6_2:19366866-19366885 Msa0911910:CDS 40.0%
AGACTTAGCCATTTCAATGC+GGG - chr6_2:19367022-19367041 None:intergenic 40.0%
CACAGACAGAAGAAGTTCAT+TGG - chr6_2:19367204-19367223 None:intergenic 40.0%
CAATGAACTTCTTCTGTCTG+TGG + chr6_2:19367202-19367221 Msa0911910:intron 40.0%
GTCAACACAAGACACTAATC+AGG + chr6_2:19367538-19367557 Msa0911910:CDS 40.0%
AAGAACAAGGGATAAGCCAA+AGG - chr6_2:19367580-19367599 None:intergenic 40.0%
ATGTTGTAGGAATTGGACCT+TGG + chr6_2:19367791-19367810 Msa0911910:CDS 40.0%
GGTACTATAGTATCCTTCCA+AGG - chr6_2:19367811-19367830 None:intergenic 40.0%
GAAGGATACTATAGTACCTG+TGG + chr6_2:19367813-19367832 Msa0911910:CDS 40.0%
CAAGTATTTGACGACTCCTT+CGG + chr6_2:19367840-19367859 Msa0911910:CDS 40.0%
! GAGCAAACCAGTATTTTCTG+CGG + chr6_2:19368016-19368035 Msa0911910:intron 40.0%
TATTGGACCGCAGAAAATAC+TGG - chr6_2:19368026-19368045 None:intergenic 40.0%
TCGAGCAGTGTTGTCAATAT+TGG - chr6_2:19368043-19368062 None:intergenic 40.0%
GCCTGTTTACAGATTTCACT+GGG + chr6_2:19368199-19368218 Msa0911910:CDS 40.0%
TCCCAGTGAAATCTGTAAAC+AGG - chr6_2:19368203-19368222 None:intergenic 40.0%
TCTTGTCATCTTGACGGTTA+GGG - chr6_2:19368254-19368273 None:intergenic 40.0%
! ATGCAGTCTTGTCATCTTGA+CGG - chr6_2:19368260-19368279 None:intergenic 40.0%
ATTAAAGTCGTTGCTTGCCG+CGG - chr6_2:19365011-19365030 None:intergenic 45.0%
AACAATGACCTGAGTGAGTG+AGG + chr6_2:19365068-19365087 Msa0911910:five_prime_UTR 45.0%
GCACCCACCTAAAAACACTA+AGG - chr6_2:19365660-19365679 None:intergenic 45.0%
TTGCCAGGAAGTGGATACAA+AGG - chr6_2:19365925-19365944 None:intergenic 45.0%
TTGTATCCACTTCCTGGCAA+AGG + chr6_2:19365925-19365944 Msa0911910:CDS 45.0%
! ATTTTGCCTCGCGAGTTAAG+TGG - chr6_2:19366060-19366079 None:intergenic 45.0%
TTGCAGAGAGCTATTGAGGA+AGG + chr6_2:19366160-19366179 Msa0911910:intron 45.0%
ATGTGATGCCCGCATTGAAA+TGG + chr6_2:19367011-19367030 Msa0911910:intron 45.0%
TAACAGGTGAAATGGTCGGA+CGG + chr6_2:19367335-19367354 Msa0911910:intron 45.0%
TGTAGGAATTGGACCTTGGA+AGG + chr6_2:19367795-19367814 Msa0911910:CDS 45.0%
GGCCTGTTTACAGATTTCAC+TGG + chr6_2:19368198-19368217 Msa0911910:CDS 45.0%
GTCTTGTCATCTTGACGGTT+AGG - chr6_2:19368255-19368274 None:intergenic 45.0%
!!! TAAACTTTATTTTAATTAAA+AGG - chr6_2:19365580-19365599 None:intergenic 5.0%
!! TATATATATATATATATATG+GGG - chr6_2:19365693-19365712 None:intergenic 5.0%
!! CTATATATATATATATATAT+GGG - chr6_2:19365694-19365713 None:intergenic 5.0%
AGGCCTTTGTATCCACTTCC+TGG + chr6_2:19365919-19365938 Msa0911910:CDS 50.0%
GAAGAGGCTGCTTACTTCCA+TGG - chr6_2:19365954-19365973 None:intergenic 50.0%
GTTGCACATAGGGGCTCAAA+TGG + chr6_2:19365994-19366013 Msa0911910:CDS 50.0%
ACTTCCTGAAGAAACTCGCG+AGG + chr6_2:19366020-19366039 Msa0911910:CDS 50.0%
TATGCCTCGCGAGTTTCTTC+AGG - chr6_2:19366027-19366046 None:intergenic 50.0%
AGAAACTCGCGAGGCATATC+TGG + chr6_2:19366029-19366048 Msa0911910:CDS 50.0%
GTGAATCCACTTAACTCGCG+AGG + chr6_2:19366051-19366070 Msa0911910:intron 50.0%
GTCGAAGGGGTCAATATCAC+TGG + chr6_2:19366316-19366335 Msa0911910:CDS 50.0%
TCTGGGTGCATCCAATGCTA+TGG - chr6_2:19367109-19367128 None:intergenic 50.0%
TTGGATGCACCCAGAGTTGT+TGG + chr6_2:19367114-19367133 Msa0911910:CDS 50.0%
TCCTTCGGATCTTGTTGCCA+GGG + chr6_2:19367855-19367874 Msa0911910:CDS 50.0%
CAGATTATGAGCATGTGCCC+TGG - chr6_2:19367875-19367894 None:intergenic 50.0%
GGCACATGCTCATAATCTGC+AGG + chr6_2:19367876-19367895 Msa0911910:CDS 50.0%
CGTTGCTTGCCGCGGAAATA+GGG - chr6_2:19365003-19365022 None:intergenic 55.0%
TCGTTGCTTGCCGCGGAAAT+AGG - chr6_2:19365004-19365023 None:intergenic 55.0%
GCTGTGTTCCTCACTCACTC+AGG - chr6_2:19365079-19365098 None:intergenic 55.0%
ATTGCTCGTGATTGGGGGCA+CGG + chr6_2:19365894-19365913 Msa0911910:CDS 55.0%
TGGTCACCTTTGCCAGGAAG+TGG - chr6_2:19365934-19365953 None:intergenic 55.0%
CTTCCTGGCAAAGGTGACCA+TGG + chr6_2:19365934-19365953 Msa0911910:CDS 55.0%
CTTCCATGGTCACCTTTGCC+AGG - chr6_2:19365940-19365959 None:intergenic 55.0%
AGTCGCTGAGGGTGAATCAG+AGG + chr6_2:19366853-19366872 Msa0911910:CDS 55.0%
GTCGGACGGCAAACGATTTG+AGG + chr6_2:19367349-19367368 Msa0911910:CDS 55.0%
CTCCTTCGGATCTTGTTGCC+AGG + chr6_2:19367854-19367873 Msa0911910:CDS 55.0%
GCCCTGGCAACAAGATCCGA+AGG - chr6_2:19367859-19367878 None:intergenic 60.0%
! TCGTGATTGGGGGCACGGCT+AGG + chr6_2:19365899-19365918 Msa0911910:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 19364994 19368326 19364994 ID=Msa0911910;Name=Msa0911910
chr6_2 mRNA 19364994 19368326 19364994 ID=Msa0911910-mRNA-1;Parent=Msa0911910;Name=Msa0911910-mRNA-1;_AED=0.16;_eAED=0.16;_QI=137|0.85|0.87|1|1|1|8|0|379
chr6_2 exon 19364994 19365146 19364994 ID=Msa0911910-mRNA-1:exon:3963;Parent=Msa0911910-mRNA-1
chr6_2 exon 19365872 19366050 19365872 ID=Msa0911910-mRNA-1:exon:3964;Parent=Msa0911910-mRNA-1
chr6_2 exon 19366166 19366349 19366166 ID=Msa0911910-mRNA-1:exon:3965;Parent=Msa0911910-mRNA-1
chr6_2 exon 19366829 19366903 19366829 ID=Msa0911910-mRNA-1:exon:3966;Parent=Msa0911910-mRNA-1
chr6_2 exon 19367070 19367179 19367070 ID=Msa0911910-mRNA-1:exon:3967;Parent=Msa0911910-mRNA-1
chr6_2 exon 19367341 19367559 19367341 ID=Msa0911910-mRNA-1:exon:3968;Parent=Msa0911910-mRNA-1
chr6_2 exon 19367742 19367897 19367742 ID=Msa0911910-mRNA-1:exon:3969;Parent=Msa0911910-mRNA-1
chr6_2 exon 19368126 19368326 19368126 ID=Msa0911910-mRNA-1:exon:3970;Parent=Msa0911910-mRNA-1
chr6_2 five_prime_UTR 19364994 19365130 19364994 ID=Msa0911910-mRNA-1:five_prime_utr;Parent=Msa0911910-mRNA-1
chr6_2 CDS 19365131 19365146 19365131 ID=Msa0911910-mRNA-1:cds;Parent=Msa0911910-mRNA-1
chr6_2 CDS 19365872 19366050 19365872 ID=Msa0911910-mRNA-1:cds;Parent=Msa0911910-mRNA-1
chr6_2 CDS 19366166 19366349 19366166 ID=Msa0911910-mRNA-1:cds;Parent=Msa0911910-mRNA-1
chr6_2 CDS 19366829 19366903 19366829 ID=Msa0911910-mRNA-1:cds;Parent=Msa0911910-mRNA-1
chr6_2 CDS 19367070 19367179 19367070 ID=Msa0911910-mRNA-1:cds;Parent=Msa0911910-mRNA-1
chr6_2 CDS 19367341 19367559 19367341 ID=Msa0911910-mRNA-1:cds;Parent=Msa0911910-mRNA-1
chr6_2 CDS 19367742 19367897 19367742 ID=Msa0911910-mRNA-1:cds;Parent=Msa0911910-mRNA-1
chr6_2 CDS 19368126 19368326 19368126 ID=Msa0911910-mRNA-1:cds;Parent=Msa0911910-mRNA-1
Gene Sequence

>Msa0911910

ATGTCTTCGTTATCGGGTTTTGCACCTTTTGTTTTTCTATTGCTCGTGATTGGGGGCACGGCTAGGCCTTTGTATCCACTTCCTGGCAAAGGTGACCATGGAAGTAAGCAGCCTCTTCAAACTTTTCGCCCATATAATGTTGCACATAGGGGCTCAAATGGAGAACTTCCTGAAGAAACTCGCGAGGCATATCTGAGAGCTATTGAGGAAGGTGCAGACTTCATTGAAACAGATATATTATCTTCCAAAGATGGTGTTCTTATATGTTTCCACGACTTTATTCTTGATAATACTACTGACATAGCAAAATACAAAGAGTTTGCTAATCGTAAAAGAACATATGAAGTCGAAGGGGTCAATATCACTGGATTTTTTGTCGTTGATTTCACATTAAAGGAATTAAAGTCGCTGAGGGTGAATCAGAGGTTCTGCTTTAGGGATCAACAGTTTAACGGAAAATTTCAAATAATCACTTTTGAAGAGTTCATTACCATAGCATTGGATGCACCCAGAGTTGTTGGAATATATCCTGAGATAAAAAGTCCAGTACATATCAATCAGCATGTGAAATGGTCGGACGGCAAACGATTTGAGGACAAGTTTGTTGAAACACTTCGGAAATATGGATACAAGGGTTCATACCTGTCAAAACATTGGTTGAAACAACCTGCATTTATACAGTCATTTGCTCCAACTTCACTTGTGTATATATCAAATCAAACGGACTTGCCTAAGATTTTTTTAATCGATGATGTTAATATGTCAACACAAGACACTAATCAGTCATATTGGGAAATTACATCTGATACATACCTAGACTACATAAAGCAATATGTTGTAGGAATTGGACCTTGGAAGGATACTATAGTACCTGTGGTTAACAAGTATTTGACGACTCCTTCGGATCTTGTTGCCAGGGCACATGCTCATAATCTGCAGTGTTTGCATTTCAACTTTAGTCAAGATCCTTACAAGGAGTATGATTACTGGATCAACAAAATGGGAATTGATGGCCTGTTTACAGATTTCACTGGGAGTCTTCATAATTTTCAGGAATGGACAAACCCTAACCGTCAAGATGACAAGACTGCATCCGAGCTATTACATAAAATTGCTGTGTTAGCATCCGCTTATGAATGA

Protein sequence

>Msa0911910

MSSLSGFAPFVFLLLVIGGTARPLYPLPGKGDHGSKQPLQTFRPYNVAHRGSNGELPEETREAYLRAIEEGADFIETDILSSKDGVLICFHDFILDNTTDIAKYKEFANRKRTYEVEGVNITGFFVVDFTLKELKSLRVNQRFCFRDQQFNGKFQIITFEEFITIALDAPRVVGIYPEIKSPVHINQHVKWSDGKRFEDKFVETLRKYGYKGSYLSKHWLKQPAFIQSFAPTSLVYISNQTDLPKIFLIDDVNMSTQDTNQSYWEITSDTYLDYIKQYVVGIGPWKDTIVPVVNKYLTTPSDLVARAHAHNLQCLHFNFSQDPYKEYDYWINKMGIDGLFTDFTGSLHNFQEWTNPNRQDDKTASELLHKIAVLASAYE*