AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1151820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1151820 MtrunA17_Chr7g0241731 93.822 259 16 0 42 300 1 259 3.75e-174 481
Msa1151820 MtrunA17_Chr4g0005861 57.422 256 96 5 40 282 10 265 1.71e-90 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1151820 AT3G09050.1 59.896 192 75 2 92 283 56 245 2.16e-75 231

Find 67 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTATTTGCTGCAAGTTTA+TGG 0.117115 7_4:-36732912 Msa1151820:three_prime_UTR
TTCATTGCTGGTCTTTCTTA+TGG 0.183022 7_4:+36732963 None:intergenic
TAATCCAGTTACTCAGATTT+TGG 0.209258 7_4:+36732755 None:intergenic
CGTTGACTTTCTCACCAAAT+TGG 0.224710 7_4:+36733535 None:intergenic
GAACTTCAAACTCTGCTAAT+TGG 0.242651 7_4:+36733289 None:intergenic
TCTGCATACTTAACCCAATT+TGG 0.242948 7_4:-36733549 Msa1151820:CDS
TGTGTTAACAACAAGTATTT+TGG 0.267348 7_4:+36733900 None:intergenic
AATGTTTACCTCTTCTTCAT+TGG 0.306206 7_4:-36733123 Msa1151820:CDS
GTGTTTGAAGCGTGACAATT+TGG 0.310066 7_4:+36733607 None:intergenic
TGTTGAACTGAGGGAGAAAA+AGG 0.314931 7_4:+36733855 None:intergenic
ACCACCAAAATCTGAGTAAC+TGG 0.323671 7_4:-36732759 Msa1151820:three_prime_UTR
GTTTACAATTGATAACATAA+TGG 0.327670 7_4:-36733928 Msa1151820:exon
GCATCAACAACAGAAGATAT+TGG 0.346985 7_4:-36732796 Msa1151820:three_prime_UTR
TTTACAATTGATAACATAAT+GGG 0.350116 7_4:-36733927 Msa1151820:exon
CCAAGTTGTAAGACTATACT+TGG 0.364550 7_4:+36732848 None:intergenic
GTTGTTAACACATTTAAGTT+TGG 0.372102 7_4:-36733889 Msa1151820:CDS
ATTATCATGCAGATTTCCTT+TGG 0.372621 7_4:-36732818 Msa1151820:three_prime_UTR
GAAATCTGCATGATAATATC+AGG 0.387977 7_4:+36732824 None:intergenic
TTGCGTCGCCTTCGACTGAT+TGG 0.388513 7_4:-36733071 Msa1151820:CDS
TAAAGGCTGGTAGTGGAATC+AGG 0.392256 7_4:-36733149 Msa1151820:CDS
CTTGATGTTGTTCTGTTTGA+AGG 0.403002 7_4:+36733752 None:intergenic
CTGTTTGAAGGAGGGATGTA+GGG 0.419954 7_4:+36733764 None:intergenic
AGCAGAGTTTGAAGTTCAAA+TGG 0.422016 7_4:-36733283 Msa1151820:CDS
GTTGACTTTCTCACCAAATT+GGG 0.428090 7_4:+36733536 None:intergenic
TGTTTGAAGCGTGACAATTT+GGG 0.431403 7_4:+36733608 None:intergenic
TCCACTACCAGCCTTTAGTC+TGG 0.433418 7_4:+36733155 None:intergenic
AACGCCGAGTTTGAAAAGAT+TGG 0.435378 7_4:-36733516 Msa1151820:CDS
CCAAGTATAGTCTTACAACT+TGG 0.440023 7_4:-36732848 Msa1151820:three_prime_UTR
TTCTCAAGGTACATTTCTAA+AGG 0.441899 7_4:+36732672 None:intergenic
TGTGCCTCTGCAAGTCCAAT+GGG 0.448799 7_4:-36733683 Msa1151820:CDS
TCTGTTTGAAGGAGGGATGT+AGG 0.449029 7_4:+36733763 None:intergenic
TTGTGCCTCTGCAAGTCCAA+TGG 0.464033 7_4:-36733684 Msa1151820:CDS
ATTCCTCGAATTCTAGCATC+TGG 0.480236 7_4:+36733352 None:intergenic
CAACAGGTGCCTTCTTTCTG+AGG 0.485279 7_4:+36733226 None:intergenic
TTTGAAGTTCAAATGGAAAA+CGG 0.485912 7_4:-36733276 Msa1151820:CDS
CTTTAAGAACCTCAGAAAGA+AGG 0.489538 7_4:-36733235 Msa1151820:CDS
AGCAAAAGCCGAAGAGGAGG+CGG 0.506687 7_4:-36733196 Msa1151820:CDS
ACCAGACTAAAGGCTGGTAG+TGG 0.519451 7_4:-36733156 Msa1151820:CDS
TAAAGATGTAACCAGACTAA+AGG 0.520928 7_4:-36733166 Msa1151820:CDS
AAACTACTGTAAAGGTCAGC+AGG 0.526715 7_4:+36733100 None:intergenic
ATCTGCAGAAATTAACAGAC+AGG 0.528683 7_4:-36733331 Msa1151820:CDS
AGCTTGAGAATCAGACCCAT+TGG 0.534125 7_4:+36733668 None:intergenic
GAGCCAGATGCTAGAATTCG+AGG 0.536260 7_4:-36733355 Msa1151820:CDS
TCTTCTGTTGTTGATGCCAA+AGG 0.541580 7_4:+36732802 None:intergenic
AATAGAATAAACTACTGTAA+AGG 0.541708 7_4:+36733092 None:intergenic
AAAGAAATATGTTGAACTGA+GGG 0.542310 7_4:+36733846 None:intergenic
TTAACAGATAACGGCGAACA+TGG 0.543649 7_4:-36733379 Msa1151820:intron
ATGTTGTTCTGTTTGAAGGA+GGG 0.548479 7_4:+36733756 None:intergenic
ATCAAAGTATGTGTTTGCAA+AGG 0.557520 7_4:+36733813 None:intergenic
GATGCAAATTTAGCTTCTCA+AGG 0.558143 7_4:+36732658 None:intergenic
GATTCTCAAGCTCCTCAACC+AGG 0.562806 7_4:-36733657 Msa1151820:CDS
ATGGAAAACGGCAGAAACGA+AGG 0.568917 7_4:-36733264 Msa1151820:CDS
TCAGCAGGCCAATGAAGAAG+AGG 0.579281 7_4:+36733115 None:intergenic
ATCAATTGTAAACAAAGATG+TGG 0.589227 7_4:+36733938 None:intergenic
GATGTAACCAGACTAAAGGC+TGG 0.590246 7_4:-36733162 Msa1151820:CDS
AAAAGAAATATGTTGAACTG+AGG 0.593006 7_4:+36733845 None:intergenic
CAAGTATAGTCTTACAACTT+GGG 0.594241 7_4:-36732847 Msa1151820:three_prime_UTR
ATTGGAGAAGATGCACTCAA+AGG 0.597460 7_4:-36733498 Msa1151820:CDS
GATGTTGTTCTGTTTGAAGG+AGG 0.604323 7_4:+36733755 None:intergenic
CAAGTTGTAAGACTATACTT+GGG 0.610661 7_4:+36732849 None:intergenic
GTATAACTTCTTGTGTTGTG+AGG 0.614593 7_4:+36733708 None:intergenic
ACAATTGATAACATAATGGG+AGG 0.627801 7_4:-36733924 Msa1151820:exon
TGGAAAACGGCAGAAACGAA+GGG 0.629953 7_4:-36733263 Msa1151820:CDS
TGATAAAGCAAAAGCCGAAG+AGG 0.643120 7_4:-36733202 Msa1151820:CDS
CATCTAGATACTCTGTAAGA+CGG 0.659918 7_4:+36733577 None:intergenic
TAAAGCAAAAGCCGAAGAGG+AGG 0.662707 7_4:-36733199 Msa1151820:CDS
CAGACCCATTGGACTTGCAG+AGG 0.674115 7_4:+36733679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACAATTGATAACATAAT+GGG - chr7_4:36732665-36732684 Msa1151820:three_prime_UTR 15.0%
!!! TTTACAATTGATAACATAAT+GGG - chr7_4:36732665-36732684 Msa1151820:three_prime_UTR 15.0%
!!! GTTTACAATTGATAACATAA+TGG - chr7_4:36732664-36732683 Msa1151820:three_prime_UTR 20.0%
!! AAATACAAAGTGAATATAAG+AGG + chr7_4:36733195-36733214 None:intergenic 20.0%
!! ACTTTGTATTTAACAGATAA+CGG - chr7_4:36733204-36733223 Msa1151820:CDS 20.0%
!! AATAGAATAAACTACTGTAA+AGG + chr7_4:36733503-36733522 None:intergenic 20.0%
!!! GTTTACAATTGATAACATAA+TGG - chr7_4:36732664-36732683 Msa1151820:three_prime_UTR 20.0%
!! AAATACAAAGTGAATATAAG+AGG + chr7_4:36733195-36733214 None:intergenic 20.0%
!! ACTTTGTATTTAACAGATAA+CGG - chr7_4:36733204-36733223 Msa1151820:CDS 20.0%
!! AATAGAATAAACTACTGTAA+AGG + chr7_4:36733503-36733522 None:intergenic 20.0%
! ATCAATTGTAAACAAAGATG+TGG + chr7_4:36732657-36732676 None:intergenic 25.0%
!! TGTGTTAACAACAAGTATTT+TGG + chr7_4:36732695-36732714 None:intergenic 25.0%
!! GTTGTTAACACATTTAAGTT+TGG - chr7_4:36732703-36732722 Msa1151820:three_prime_UTR 25.0%
! AAAGAAATATGTTGAACTGA+GGG + chr7_4:36732749-36732768 None:intergenic 25.0%
! AAAAGAAATATGTTGAACTG+AGG + chr7_4:36732750-36732769 None:intergenic 25.0%
!! TTTGAAGTTCAAATGGAAAA+CGG - chr7_4:36733316-36733335 Msa1151820:CDS 25.0%
! ATCAATTGTAAACAAAGATG+TGG + chr7_4:36732657-36732676 None:intergenic 25.0%
!! TGTGTTAACAACAAGTATTT+TGG + chr7_4:36732695-36732714 None:intergenic 25.0%
!! GTTGTTAACACATTTAAGTT+TGG - chr7_4:36732703-36732722 Msa1151820:three_prime_UTR 25.0%
! AAAGAAATATGTTGAACTGA+GGG + chr7_4:36732749-36732768 None:intergenic 25.0%
! AAAAGAAATATGTTGAACTG+AGG + chr7_4:36732750-36732769 None:intergenic 25.0%
!! TTTGAAGTTCAAATGGAAAA+CGG - chr7_4:36733316-36733335 Msa1151820:CDS 25.0%
! ACAATTGATAACATAATGGG+AGG - chr7_4:36732668-36732687 Msa1151820:three_prime_UTR 30.0%
ATCAAAGTATGTGTTTGCAA+AGG + chr7_4:36732782-36732801 None:intergenic 30.0%
!!! TCTTGTTTTTTTGTATCTCC+TGG + chr7_4:36732956-36732975 None:intergenic 30.0%
! TTCTCCAATCTTTTCAAACT+CGG + chr7_4:36733083-36733102 None:intergenic 30.0%
TAAAGATGTAACCAGACTAA+AGG - chr7_4:36733426-36733445 Msa1151820:intron 30.0%
AATGTTTACCTCTTCTTCAT+TGG - chr7_4:36733469-36733488 Msa1151820:intron 30.0%
!! TTTGTTTTCTTCTTCATTGC+TGG + chr7_4:36733644-36733663 None:intergenic 30.0%
! TGTTATTTGCTGCAAGTTTA+TGG - chr7_4:36733680-36733699 Msa1151820:CDS 30.0%
CAAGTTGTAAGACTATACTT+GGG + chr7_4:36733746-36733765 None:intergenic 30.0%
! CAAGTATAGTCTTACAACTT+GGG - chr7_4:36733745-36733764 Msa1151820:CDS 30.0%
GAAATCTGCATGATAATATC+AGG + chr7_4:36733771-36733790 None:intergenic 30.0%
ATTATCATGCAGATTTCCTT+TGG - chr7_4:36733774-36733793 Msa1151820:CDS 30.0%
! TAATCCAGTTACTCAGATTT+TGG + chr7_4:36733840-36733859 None:intergenic 30.0%
TTCTCAAGGTACATTTCTAA+AGG + chr7_4:36733923-36733942 None:intergenic 30.0%
! ACAATTGATAACATAATGGG+AGG - chr7_4:36732668-36732687 Msa1151820:three_prime_UTR 30.0%
ATCAAAGTATGTGTTTGCAA+AGG + chr7_4:36732782-36732801 None:intergenic 30.0%
!!! TCTTGTTTTTTTGTATCTCC+TGG + chr7_4:36732956-36732975 None:intergenic 30.0%
! TTCTCCAATCTTTTCAAACT+CGG + chr7_4:36733083-36733102 None:intergenic 30.0%
TAAAGATGTAACCAGACTAA+AGG - chr7_4:36733426-36733445 Msa1151820:intron 30.0%
AATGTTTACCTCTTCTTCAT+TGG - chr7_4:36733469-36733488 Msa1151820:intron 30.0%
!! TTTGTTTTCTTCTTCATTGC+TGG + chr7_4:36733644-36733663 None:intergenic 30.0%
! TGTTATTTGCTGCAAGTTTA+TGG - chr7_4:36733680-36733699 Msa1151820:CDS 30.0%
CAAGTTGTAAGACTATACTT+GGG + chr7_4:36733746-36733765 None:intergenic 30.0%
! CAAGTATAGTCTTACAACTT+GGG - chr7_4:36733745-36733764 Msa1151820:CDS 30.0%
GAAATCTGCATGATAATATC+AGG + chr7_4:36733771-36733790 None:intergenic 30.0%
ATTATCATGCAGATTTCCTT+TGG - chr7_4:36733774-36733793 Msa1151820:CDS 30.0%
! TAATCCAGTTACTCAGATTT+TGG + chr7_4:36733840-36733859 None:intergenic 30.0%
TTCTCAAGGTACATTTCTAA+AGG + chr7_4:36733923-36733942 None:intergenic 30.0%
ATGTTGTTCTGTTTGAAGGA+GGG + chr7_4:36732839-36732858 None:intergenic 35.0%
CTTGATGTTGTTCTGTTTGA+AGG + chr7_4:36732843-36732862 None:intergenic 35.0%
GTATAACTTCTTGTGTTGTG+AGG + chr7_4:36732887-36732906 None:intergenic 35.0%
!!! TTTTTTGTATCTCCTGGTTG+AGG + chr7_4:36732950-36732969 None:intergenic 35.0%
! TGTTTGAAGCGTGACAATTT+GGG + chr7_4:36732987-36733006 None:intergenic 35.0%
CATCTAGATACTCTGTAAGA+CGG + chr7_4:36733018-36733037 None:intergenic 35.0%
TCTGCATACTTAACCCAATT+TGG - chr7_4:36733043-36733062 Msa1151820:CDS 35.0%
! GTTGACTTTCTCACCAAATT+GGG + chr7_4:36733059-36733078 None:intergenic 35.0%
! TTAAATGGTTAGCTCGAAAG+TGG + chr7_4:36733154-36733173 None:intergenic 35.0%
ATCTGCAGAAATTAACAGAC+AGG - chr7_4:36733261-36733280 Msa1151820:CDS 35.0%
GAACTTCAAACTCTGCTAAT+TGG + chr7_4:36733306-36733325 None:intergenic 35.0%
! AGCAGAGTTTGAAGTTCAAA+TGG - chr7_4:36733309-36733328 Msa1151820:CDS 35.0%
! CTTTAAGAACCTCAGAAAGA+AGG - chr7_4:36733357-36733376 Msa1151820:CDS 35.0%
! GCTTTTGCTTTATCAACAAC+AGG + chr7_4:36733385-36733404 None:intergenic 35.0%
! TGGAGAAAAGTTGCAGTTTT+TGG - chr7_4:36733541-36733560 Msa1151820:CDS 35.0%
!!! AGTTTTTGGAGCAATTCTTG+TGG - chr7_4:36733555-36733574 Msa1151820:CDS 35.0%
!! TTCATTGCTGGTCTTTCTTA+TGG + chr7_4:36733632-36733651 None:intergenic 35.0%
CCAAGTTGTAAGACTATACT+TGG + chr7_4:36733747-36733766 None:intergenic 35.0%
! CCAAGTATAGTCTTACAACT+TGG - chr7_4:36733744-36733763 Msa1151820:CDS 35.0%
GCATCAACAACAGAAGATAT+TGG - chr7_4:36733796-36733815 Msa1151820:CDS 35.0%
! GATGCAAATTTAGCTTCTCA+AGG + chr7_4:36733937-36733956 None:intergenic 35.0%
ATGTTGTTCTGTTTGAAGGA+GGG + chr7_4:36732839-36732858 None:intergenic 35.0%
CTTGATGTTGTTCTGTTTGA+AGG + chr7_4:36732843-36732862 None:intergenic 35.0%
GTATAACTTCTTGTGTTGTG+AGG + chr7_4:36732887-36732906 None:intergenic 35.0%
!!! TTTTTTGTATCTCCTGGTTG+AGG + chr7_4:36732950-36732969 None:intergenic 35.0%
! TGTTTGAAGCGTGACAATTT+GGG + chr7_4:36732987-36733006 None:intergenic 35.0%
CATCTAGATACTCTGTAAGA+CGG + chr7_4:36733018-36733037 None:intergenic 35.0%
TCTGCATACTTAACCCAATT+TGG - chr7_4:36733043-36733062 Msa1151820:CDS 35.0%
! GTTGACTTTCTCACCAAATT+GGG + chr7_4:36733059-36733078 None:intergenic 35.0%
! TTAAATGGTTAGCTCGAAAG+TGG + chr7_4:36733154-36733173 None:intergenic 35.0%
ATCTGCAGAAATTAACAGAC+AGG - chr7_4:36733261-36733280 Msa1151820:CDS 35.0%
GAACTTCAAACTCTGCTAAT+TGG + chr7_4:36733306-36733325 None:intergenic 35.0%
! AGCAGAGTTTGAAGTTCAAA+TGG - chr7_4:36733309-36733328 Msa1151820:CDS 35.0%
! CTTTAAGAACCTCAGAAAGA+AGG - chr7_4:36733357-36733376 Msa1151820:CDS 35.0%
! GCTTTTGCTTTATCAACAAC+AGG + chr7_4:36733385-36733404 None:intergenic 35.0%
! TGGAGAAAAGTTGCAGTTTT+TGG - chr7_4:36733541-36733560 Msa1151820:CDS 35.0%
!!! AGTTTTTGGAGCAATTCTTG+TGG - chr7_4:36733555-36733574 Msa1151820:CDS 35.0%
!! TTCATTGCTGGTCTTTCTTA+TGG + chr7_4:36733632-36733651 None:intergenic 35.0%
CCAAGTTGTAAGACTATACT+TGG + chr7_4:36733747-36733766 None:intergenic 35.0%
! CCAAGTATAGTCTTACAACT+TGG - chr7_4:36733744-36733763 Msa1151820:CDS 35.0%
GCATCAACAACAGAAGATAT+TGG - chr7_4:36733796-36733815 Msa1151820:CDS 35.0%
! GATGCAAATTTAGCTTCTCA+AGG + chr7_4:36733937-36733956 None:intergenic 35.0%
TGTTGAACTGAGGGAGAAAA+AGG + chr7_4:36732740-36732759 None:intergenic 40.0%
GATGTTGTTCTGTTTGAAGG+AGG + chr7_4:36732840-36732859 None:intergenic 40.0%
! GTGTTTGAAGCGTGACAATT+TGG + chr7_4:36732988-36733007 None:intergenic 40.0%
!! CGTTGACTTTCTCACCAAAT+TGG + chr7_4:36733060-36733079 None:intergenic 40.0%
AACGCCGAGTTTGAAAAGAT+TGG - chr7_4:36733076-36733095 Msa1151820:CDS 40.0%
ATTGGAGAAGATGCACTCAA+AGG - chr7_4:36733094-36733113 Msa1151820:CDS 40.0%
! TTAACAGATAACGGCGAACA+TGG - chr7_4:36733213-36733232 Msa1151820:CDS 40.0%
ATTCCTCGAATTCTAGCATC+TGG + chr7_4:36733243-36733262 None:intergenic 40.0%
TGATAAAGCAAAAGCCGAAG+AGG - chr7_4:36733390-36733409 Msa1151820:intron 40.0%
!!! AATTTTTTCCGCCTCCTCTT+CGG + chr7_4:36733407-36733426 None:intergenic 40.0%
AAACTACTGTAAAGGTCAGC+AGG + chr7_4:36733495-36733514 None:intergenic 40.0%
! ACTTTTCTCCAATCAGTCGA+AGG + chr7_4:36733532-36733551 None:intergenic 40.0%
TCTTCTGTTGTTGATGCCAA+AGG + chr7_4:36733793-36733812 None:intergenic 40.0%
ACCACCAAAATCTGAGTAAC+TGG - chr7_4:36733833-36733852 Msa1151820:CDS 40.0%
! TCCAGTTACTCAGATTTTGG+TGG + chr7_4:36733837-36733856 None:intergenic 40.0%
TGTTGAACTGAGGGAGAAAA+AGG + chr7_4:36732740-36732759 None:intergenic 40.0%
GATGTTGTTCTGTTTGAAGG+AGG + chr7_4:36732840-36732859 None:intergenic 40.0%
! GTGTTTGAAGCGTGACAATT+TGG + chr7_4:36732988-36733007 None:intergenic 40.0%
!! CGTTGACTTTCTCACCAAAT+TGG + chr7_4:36733060-36733079 None:intergenic 40.0%
AACGCCGAGTTTGAAAAGAT+TGG - chr7_4:36733076-36733095 Msa1151820:CDS 40.0%
ATTGGAGAAGATGCACTCAA+AGG - chr7_4:36733094-36733113 Msa1151820:CDS 40.0%
! TTAACAGATAACGGCGAACA+TGG - chr7_4:36733213-36733232 Msa1151820:CDS 40.0%
ATTCCTCGAATTCTAGCATC+TGG + chr7_4:36733243-36733262 None:intergenic 40.0%
TGATAAAGCAAAAGCCGAAG+AGG - chr7_4:36733390-36733409 Msa1151820:intron 40.0%
!!! AATTTTTTCCGCCTCCTCTT+CGG + chr7_4:36733407-36733426 None:intergenic 40.0%
AAACTACTGTAAAGGTCAGC+AGG + chr7_4:36733495-36733514 None:intergenic 40.0%
! ACTTTTCTCCAATCAGTCGA+AGG + chr7_4:36733532-36733551 None:intergenic 40.0%
TCTTCTGTTGTTGATGCCAA+AGG + chr7_4:36733793-36733812 None:intergenic 40.0%
ACCACCAAAATCTGAGTAAC+TGG - chr7_4:36733833-36733852 Msa1151820:CDS 40.0%
! TCCAGTTACTCAGATTTTGG+TGG + chr7_4:36733837-36733856 None:intergenic 40.0%
CTGTTTGAAGGAGGGATGTA+GGG + chr7_4:36732831-36732850 None:intergenic 45.0%
TCTGTTTGAAGGAGGGATGT+AGG + chr7_4:36732832-36732851 None:intergenic 45.0%
! TGTTGTGAGGTCTTTTGCAG+AGG + chr7_4:36732874-36732893 None:intergenic 45.0%
AGCTTGAGAATCAGACCCAT+TGG + chr7_4:36732927-36732946 None:intergenic 45.0%
AAGTGGAAGCAATCGTACTC+TGG + chr7_4:36733137-36733156 None:intergenic 45.0%
ATGGAAAACGGCAGAAACGA+AGG - chr7_4:36733328-36733347 Msa1151820:CDS 45.0%
TGGAAAACGGCAGAAACGAA+GGG - chr7_4:36733329-36733348 Msa1151820:CDS 45.0%
TAAAGCAAAAGCCGAAGAGG+AGG - chr7_4:36733393-36733412 Msa1151820:intron 45.0%
GATGTAACCAGACTAAAGGC+TGG - chr7_4:36733430-36733449 Msa1151820:intron 45.0%
!! TAAAGGCTGGTAGTGGAATC+AGG - chr7_4:36733443-36733462 Msa1151820:intron 45.0%
CTGTTTGAAGGAGGGATGTA+GGG + chr7_4:36732831-36732850 None:intergenic 45.0%
TCTGTTTGAAGGAGGGATGT+AGG + chr7_4:36732832-36732851 None:intergenic 45.0%
! TGTTGTGAGGTCTTTTGCAG+AGG + chr7_4:36732874-36732893 None:intergenic 45.0%
AGCTTGAGAATCAGACCCAT+TGG + chr7_4:36732927-36732946 None:intergenic 45.0%
AAGTGGAAGCAATCGTACTC+TGG + chr7_4:36733137-36733156 None:intergenic 45.0%
ATGGAAAACGGCAGAAACGA+AGG - chr7_4:36733328-36733347 Msa1151820:CDS 45.0%
TGGAAAACGGCAGAAACGAA+GGG - chr7_4:36733329-36733348 Msa1151820:CDS 45.0%
TAAAGCAAAAGCCGAAGAGG+AGG - chr7_4:36733393-36733412 Msa1151820:intron 45.0%
GATGTAACCAGACTAAAGGC+TGG - chr7_4:36733430-36733449 Msa1151820:intron 45.0%
!! TAAAGGCTGGTAGTGGAATC+AGG - chr7_4:36733443-36733462 Msa1151820:intron 45.0%
!!! TTTTTTATTTACATTTTAAA+TGG + chr7_4:36733169-36733188 None:intergenic 5.0%
!!! TTTTTTATTTACATTTTAAA+TGG + chr7_4:36733169-36733188 None:intergenic 5.0%
TTGTGCCTCTGCAAGTCCAA+TGG - chr7_4:36732908-36732927 Msa1151820:three_prime_UTR 50.0%
TGTGCCTCTGCAAGTCCAAT+GGG - chr7_4:36732909-36732928 Msa1151820:three_prime_UTR 50.0%
GATTCTCAAGCTCCTCAACC+AGG - chr7_4:36732935-36732954 Msa1151820:exon 50.0%
GAGCCAGATGCTAGAATTCG+AGG - chr7_4:36733237-36733256 Msa1151820:CDS 50.0%
CAACAGGTGCCTTCTTTCTG+AGG + chr7_4:36733369-36733388 None:intergenic 50.0%
ACCAGACTAAAGGCTGGTAG+TGG - chr7_4:36733436-36733455 Msa1151820:intron 50.0%
TCCACTACCAGCCTTTAGTC+TGG + chr7_4:36733440-36733459 None:intergenic 50.0%
TCAGCAGGCCAATGAAGAAG+AGG + chr7_4:36733480-36733499 None:intergenic 50.0%
TTGTGCCTCTGCAAGTCCAA+TGG - chr7_4:36732908-36732927 Msa1151820:three_prime_UTR 50.0%
TGTGCCTCTGCAAGTCCAAT+GGG - chr7_4:36732909-36732928 Msa1151820:three_prime_UTR 50.0%
GATTCTCAAGCTCCTCAACC+AGG - chr7_4:36732935-36732954 Msa1151820:exon 50.0%
GAGCCAGATGCTAGAATTCG+AGG - chr7_4:36733237-36733256 Msa1151820:CDS 50.0%
CAACAGGTGCCTTCTTTCTG+AGG + chr7_4:36733369-36733388 None:intergenic 50.0%
ACCAGACTAAAGGCTGGTAG+TGG - chr7_4:36733436-36733455 Msa1151820:intron 50.0%
TCCACTACCAGCCTTTAGTC+TGG + chr7_4:36733440-36733459 None:intergenic 50.0%
TCAGCAGGCCAATGAAGAAG+AGG + chr7_4:36733480-36733499 None:intergenic 50.0%
CAGACCCATTGGACTTGCAG+AGG + chr7_4:36732916-36732935 None:intergenic 55.0%
AGCAAAAGCCGAAGAGGAGG+CGG - chr7_4:36733396-36733415 Msa1151820:intron 55.0%
TTGCGTCGCCTTCGACTGAT+TGG - chr7_4:36733521-36733540 Msa1151820:CDS 55.0%
CAGACCCATTGGACTTGCAG+AGG + chr7_4:36732916-36732935 None:intergenic 55.0%
AGCAAAAGCCGAAGAGGAGG+CGG - chr7_4:36733396-36733415 Msa1151820:intron 55.0%
TTGCGTCGCCTTCGACTGAT+TGG - chr7_4:36733521-36733540 Msa1151820:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 36732654 36733960 36732654 ID=Msa1151820;Name=Msa1151820
chr7_4 mRNA 36732654 36733960 36732654 ID=Msa1151820-mRNA-1;Parent=Msa1151820;Name=Msa1151820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=29|1|1|1|1|1|2|294|300
chr7_4 exon 36732654 36733394 36732654 ID=Msa1151820-mRNA-1:exon:8661;Parent=Msa1151820-mRNA-1
chr7_4 exon 36733476 36733960 36733476 ID=Msa1151820-mRNA-1:exon:8660;Parent=Msa1151820-mRNA-1
chr7_4 five_prime_UTR 36733932 36733960 36733932 ID=Msa1151820-mRNA-1:five_prime_utr;Parent=Msa1151820-mRNA-1
chr7_4 CDS 36733476 36733931 36733476 ID=Msa1151820-mRNA-1:cds;Parent=Msa1151820-mRNA-1
chr7_4 CDS 36732948 36733394 36732948 ID=Msa1151820-mRNA-1:cds;Parent=Msa1151820-mRNA-1
chr7_4 three_prime_UTR 36732654 36732947 36732654 ID=Msa1151820-mRNA-1:three_prime_utr;Parent=Msa1151820-mRNA-1
Gene Sequence

>Msa1151820

ATGGGAGGTCCAAAATACTTGTTGTTAACACATTTAAGTTTGGTCATGCTGCATCCTTTTTCTCCCTCAGTTCAACATATTTCTTTTTCATTTGAACCTTTGCAAACACATACTTTGATTGTTATGAAGATGACTGCTCTCAAATCCCTACATCCCTCCTTCAAACAGAACAACATCAAGTGTAATATCCTCTGCAAAAGACCTCACAACACAAGAAGTTATACTTTGTGCCTCTGCAAGTCCAATGGGTCTGATTCTCAAGCTCCTCAACCAGGAGATACAAAAAAACAAGAACTTCTAGCCCAAATTGTCACGCTTCAAACACGAAAAGTCCGTCTTACAGAGTATCTAGATGAGAGATCTGCATACTTAACCCAATTTGGTGAGAAAGTCAACGCCGAGTTTGAAAAGATTGGAGAAGATGCACTCAAAGGATTAGATGAAGCTAGTGCCAGAATAACGGCGAACATGGAGAGCCAGATGCTAGAATTCGAGGAATCTGCAGAAATTAACAGACAGGAGATTCAAGAGCATGAAAACCAATTAGCAGAGTTTGAAGTTCAAATGGAAAACGGCAGAAACGAAGGGCTATTCTTTAAGAACCTCAGAAAGAAGGCACCTGTTGTTGATAAAGCAAAAGCCGAAGAGGAGGCGGAAAAAATTAAAGATGTAACCAGACTAAAGGCTGGTAGTGGAATCAGGAAAAATGTTTACCTCTTCTTCATTGGCCTGCTGACCTTTACAGTAGTTTATTCTATTGCGTCGCCTTCGACTGATTGGAGAAAAGTTGCAGTTTTTGGAGCAATTCTTGTGGCTTTGACTTCTCAGTTCGTCTATGAACAAAACATGTCAGCAGACACTAGAACCATAAGAAAGACCAGCAATGAAGAAGAAAACAAATGA

Protein sequence

>Msa1151820

MGGPKYLLLTHLSLVMLHPFSPSVQHISFSFEPLQTHTLIVMKMTALKSLHPSFKQNNIKCNILCKRPHNTRSYTLCLCKSNGSDSQAPQPGDTKKQELLAQIVTLQTRKVRLTEYLDERSAYLTQFGEKVNAEFEKIGEDALKGLDEASARITANMESQMLEFEESAEINRQEIQEHENQLAEFEVQMENGRNEGLFFKNLRKKAPVVDKAKAEEEAEKIKDVTRLKAGSGIRKNVYLFFIGLLTFTVVYSIASPSTDWRKVAVFGAILVALTSQFVYEQNMSADTRTIRKTSNEEENK*