AlfalfaGEDB | Msa0811000

M. sativa cultivar zhongmu-4 / Msa0811000

KEGG: K09260
GO: GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0811000	XP_039690523.1	85.782	211	12	1	1	193	1	211	1.46e-123	357

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0811000	sp\|O82794\|AGL24_ARATH	52.752	218	74	6	1	190	1	217	3.21e-62	195

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0811000	G7KBL2	80.444	225	12	2	1	193	1	225	4.31e-121	351

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TFs/TRs:

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Gene ID	Type	Classification
Msa0811000	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0811000	0.871284	7.682532e-67	-8.615850e-47
Msa0012780	Msa0811000	-0.869455	3.056847e-66	-8.615850e-47
Msa0012820	Msa0811000	-0.842448	2.570044e-58	-8.615850e-47
Msa0014410	Msa0811000	0.801004	1.104475e-48	-8.615850e-47
Msa0014790	Msa0811000	0.820311	7.334827e-53	-8.615850e-47
Msa0020630	Msa0811000	0.862668	4.306086e-64	-8.615850e-47
Msa0022640	Msa0811000	0.815573	8.626507e-52	-8.615850e-47
Msa0034310	Msa0811000	-0.808774	2.625579e-50	-8.615850e-47
Msa0036150	Msa0811000	0.850643	1.487129e-60	-8.615850e-47
Msa0036580	Msa0811000	-0.810329	1.216706e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0811000	MtrunA17_Chr5g0427401	80.444	225	12	2	1	193	1	225	8.30e-125	351
Msa0811000	MtrunA17_Chr5g0412461	47.577	227	83	6	1	192	1	226	1.78e-58	183
Msa0811000	MtrunA17_Chr5g0412271	47.807	228	82	7	1	192	1	227	3.61e-57	179
Msa0811000	MtrunA17_Chr4g0049901	43.868	212	97	5	1	191	27	237	5.43e-46	151
Msa0811000	MtrunA17_Chr2g0279821	48.175	137	70	1	1	136	1	137	3.56e-36	126
Msa0811000	MtrunA17_Chr4g0049541	45.652	138	72	2	1	136	1	137	1.35e-35	124
Msa0811000	MtrunA17_Chr5g0411691	49.650	143	58	3	1	136	1	136	5.18e-34	120
Msa0811000	MtrunA17_Chr3g0097101	40.476	168	95	2	1	166	16	180	2.47e-32	116
Msa0811000	MtrunA17_Chr4g0061691	43.972	141	72	3	1	136	1	139	4.67e-30	110
Msa0811000	MtrunA17_Chr7g0246431	44.604	139	67	2	1	133	1	135	4.94e-30	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0811000	AT4G24540.1	52.752	218	74	6	1	190	1	217	3.26e-63	195
Msa0811000	AT2G22540.3	44.351	239	84	6	1	191	1	238	1.57e-58	184
Msa0811000	AT2G22540.1	44.351	239	84	6	1	191	1	238	1.57e-58	184
Msa0811000	AT2G22540.2	43.096	239	82	7	1	191	1	233	8.38e-54	171
Msa0811000	AT3G57230.2	46.207	145	76	2	1	144	1	144	5.54e-38	128
Msa0811000	AT3G57230.1	46.715	137	72	1	1	136	1	137	2.71e-36	127
Msa0811000	AT3G57230.4	46.715	137	72	1	1	136	1	137	2.71e-36	127
Msa0811000	AT4G37940.4	39.604	202	111	4	1	192	1	201	4.88e-35	123
Msa0811000	AT4G37940.3	46.809	141	73	2	1	140	1	140	2.42e-34	120
Msa0811000	AT4G37940.1	46.809	141	73	2	1	140	1	140	1.48e-33	119

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Find 59 sgRNAs with CRISPR-Local

Find 903 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGATAATGCAACTGCA+AGG	0.650419	5_3:+40021400	Msa0811000:CDS
AAGCCGTACGTACTTGGAAC+TGG	0.480819	5_3:-40021544	None:intergenic
AATATGTAGAGAAAGATTAA+TGG	0.356186	5_3:+40021353	Msa0811000:intron
AATATTGATGTCCTTGGCAT+TGG	0.401991	5_3:+40035607	Msa0811000:three_prime_UTR
AATGTAAGCAGCTGTAATAG+TGG	0.579600	5_3:+40034979	Msa0811000:CDS
AATTGAGAAACCTTAGTTGT+TGG	0.432761	5_3:-40031051	None:intergenic
ACAGCTGCTTACATTATTCA+TGG	0.347856	5_3:-40034971	None:intergenic
ACATTTAGAACATCTATAGG+AGG	0.579175	5_3:+40035557	Msa0811000:three_prime_UTR
ACTTCCTTATACAATTCAGT+TGG	0.535258	5_3:-40031016	None:intergenic
AGGAATCATCTTCAAGAGAA+GGG	0.588663	5_3:-40035002	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAACAAACCTGATTAGAA+TGG	-	chr5_3:40020947-40020966	None:intergenic	30.0%
AAATAGATAATGCAACTGCA+AGG	+	chr5_3:40021400-40021419	Msa0811000:CDS	30.0%
ATATTTCATGCGGGAAAATA+GGG	+	chr5_3:40021663-40021682	Msa0811000:intron	30.0%
AAGATTTACCATGTAGAAGA+TGG	+	chr5_3:40021725-40021744	Msa0811000:intron	30.0%
GTAGGTCTCTAGATTAATTT+AGG	+	chr5_3:40022891-40022910	Msa0811000:intron	30.0%
CAAAGATTTCATAGATGTGT+AGG	-	chr5_3:40023680-40023699	None:intergenic	30.0%
AAATTAGTCGATCTATACGT+AGG	+	chr5_3:40024410-40024429	Msa0811000:intron	30.0%
CACATTATCGTGTATATCTT+TGG	-	chr5_3:40024838-40024857	None:intergenic	30.0%
ATAATCATCACCTTACAAGT+CGG	+	chr5_3:40025447-40025466	Msa0811000:intron	30.0%
TAGTATCAGAGTCTGATTTA+AGG	+	chr5_3:40025510-40025529	Msa0811000:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	40020859	40035733	40020859	ID=Msa0811000;Name=Msa0811000
chr5_3	mRNA	40020859	40035733	40020859	ID=Msa0811000-mRNA-1;Parent=Msa0811000;Name=Msa0811000-mRNA-1;_AED=0.17;_eAED=0.17;_QI=108\|0.85\|1\|1\|0.28\|0.37\|8\|330\|193
chr5_3	exon	40020859	40020956	40020859	ID=Msa0811000-mRNA-1:exon:12258;Parent=Msa0811000-mRNA-1
chr5_3	exon	40021362	40021553	40021362	ID=Msa0811000-mRNA-1:exon:12259;Parent=Msa0811000-mRNA-1
chr5_3	exon	40030730	40030805	40030730	ID=Msa0811000-mRNA-1:exon:12260;Parent=Msa0811000-mRNA-1
chr5_3	exon	40031001	40031062	40031001	ID=Msa0811000-mRNA-1:exon:12261;Parent=Msa0811000-mRNA-1
chr5_3	exon	40031168	40031267	40031168	ID=Msa0811000-mRNA-1:exon:12262;Parent=Msa0811000-mRNA-1
chr5_3	exon	40034904	40035046	40034904	ID=Msa0811000-mRNA-1:exon:12263;Parent=Msa0811000-mRNA-1
chr5_3	exon	40035296	40035354	40035296	ID=Msa0811000-mRNA-1:exon:12264;Parent=Msa0811000-mRNA-1
chr5_3	exon	40035444	40035733	40035444	ID=Msa0811000-mRNA-1:exon:12265;Parent=Msa0811000-mRNA-1
chr5_3	five_prime_UTR	40020859	40020956	40020859	ID=Msa0811000-mRNA-1:five_prime_utr;Parent=Msa0811000-mRNA-1
chr5_3	five_prime_UTR	40021362	40021371	40021362	ID=Msa0811000-mRNA-1:five_prime_utr;Parent=Msa0811000-mRNA-1
chr5_3	CDS	40021372	40021553	40021372	ID=Msa0811000-mRNA-1:cds;Parent=Msa0811000-mRNA-1
chr5_3	CDS	40030730	40030805	40030730	ID=Msa0811000-mRNA-1:cds;Parent=Msa0811000-mRNA-1
chr5_3	CDS	40031001	40031062	40031001	ID=Msa0811000-mRNA-1:cds;Parent=Msa0811000-mRNA-1
chr5_3	CDS	40031168	40031267	40031168	ID=Msa0811000-mRNA-1:cds;Parent=Msa0811000-mRNA-1
chr5_3	CDS	40034904	40035046	40034904	ID=Msa0811000-mRNA-1:cds;Parent=Msa0811000-mRNA-1
chr5_3	CDS	40035296	40035314	40035296	ID=Msa0811000-mRNA-1:cds;Parent=Msa0811000-mRNA-1
chr5_3	three_prime_UTR	40035315	40035354	40035315	ID=Msa0811000-mRNA-1:three_prime_utr;Parent=Msa0811000-mRNA-1
chr5_3	three_prime_UTR	40035444	40035733	40035444	ID=Msa0811000-mRNA-1:three_prime_utr;Parent=Msa0811000-mRNA-1

Gene Sequence

>Msa0811000

ATGGCGAGGCAGAAGATAAAGATAAAGAAAATAGATAATGCAACTGCAAGGCAAGTGACGTTTTCGAAGAGAAGAAGAGGGATCTTCAAGAAAGCTGAGGAGCTTTCGATTTTGTGTGATGCTGAAGTTGGTCTTGTTATTTTCTCAACTACTGGGAAATTATATGAATATGCCAGTTCCAATATGAAGGGCATAATTACAAGGTATGATCAGCAGTCCCACCACATCACCAAATTGGATAAACCTCTGCAAGTGCAGGTAGAAAAAAACATGCCAACTGAATTGTATAAGGAAGTTGATGATACAACCCAACAACTAAGGGGGATGAAGAGTGAGGATTTTGAAGGGTTAAACTTAGAGGGGTTGCAGCAATTGGAGAAAACTCTTGAATCAGGACTCAAGCGTGTGATTGAGATGAAGATGGTTACGTTAAGTTCTATCTTTGGGGACTCAGATAGTACCATGCAAGAAAATGTCTCAGCAGAGTCCATGAATAATGTAAGCAGCTGTAATAGTGGCCCTTCTCTTGAAGATGATTCCTCTGACACATCTCTTAAGTTAGGGTTACCATTTCCTAATTGA

Protein sequence

>Msa0811000

MARQKIKIKKIDNATARQVTFSKRRRGIFKKAEELSILCDAEVGLVIFSTTGKLYEYASSNMKGIITRYDQQSHHITKLDKPLQVQVEKNMPTELYKEVDDTTQQLRGMKSEDFEGLNLEGLQQLEKTLESGLKRVIEMKMVTLSSIFGDSDSTMQENVSAESMNNVSSCNSGPSLEDDSSDTSLKLGLPFPN*