Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419030 | G8A101 | 85.000 | 260 | 33 | 1 | 1 | 260 | 1 | 254 | 4.41e-165 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa1419030 | 0.811627 | 6.369329e-51 | -8.615850e-47 |
| Msa0016570 | Msa1419030 | 0.800336 | 1.511605e-48 | -8.615850e-47 |
| Msa0033420 | Msa1419030 | 0.912567 | 1.679417e-83 | -8.615850e-47 |
| Msa0120300 | Msa1419030 | 0.807403 | 5.141929e-50 | -8.615850e-47 |
| Msa0627670 | Msa1419030 | 0.871905 | 4.785889e-67 | -8.615850e-47 |
| Msa0637710 | Msa1419030 | 0.810264 | 1.256577e-50 | -8.615850e-47 |
| Msa0731550 | Msa1419030 | 0.800536 | 1.376224e-48 | -8.615850e-47 |
| Msa0766630 | Msa1419030 | 0.801270 | 9.746654e-49 | -8.615850e-47 |
| Msa0767760 | Msa1419030 | 0.820793 | 5.685956e-53 | -8.615850e-47 |
| Msa1233890 | Msa1419030 | 0.804179 | 2.446135e-49 | -8.615850e-47 |
| Msa1284680 | Msa1419030 | 0.806132 | 9.544376e-50 | -8.615850e-47 |
| Msa0405370 | Msa1419030 | 0.812317 | 4.504806e-51 | -8.615850e-47 |
| Msa0993030 | Msa1419030 | 0.930524 | 1.444095e-93 | -8.615850e-47 |
| Msa1000890 | Msa1419030 | 0.801820 | 7.516569e-49 | -8.615850e-47 |
| Msa1011610 | Msa1419030 | 0.801409 | 9.127616e-49 | -8.615850e-47 |
| Msa1014540 | Msa1419030 | 0.824778 | 6.711703e-54 | -8.615850e-47 |
| Msa1075650 | Msa1419030 | 0.801580 | 8.419655e-49 | -8.615850e-47 |
| Msa0288100 | Msa1419030 | 0.801517 | 8.673583e-49 | -8.615850e-47 |
| Msa0329190 | Msa1419030 | 0.800144 | 1.654446e-48 | -8.615850e-47 |
| Msa1108650 | Msa1419030 | 0.860958 | 1.436411e-63 | -8.615850e-47 |
| Msa1113170 | Msa1419030 | 0.825860 | 3.723652e-54 | -8.615850e-47 |
| Msa1165540 | Msa1419030 | 0.829196 | 5.893813e-55 | -8.615850e-47 |
| Msa0502160 | Msa1419030 | 0.828996 | 6.590352e-55 | -8.615850e-47 |
| Msa0514760 | Msa1419030 | 0.920150 | 1.842073e-87 | -8.615850e-47 |
| Msa0541200 | Msa1419030 | 0.828650 | 7.990333e-55 | -8.615850e-47 |
| Msa0863890 | Msa1419030 | 0.890533 | 9.037493e-74 | -8.615850e-47 |
| Msa0875260 | Msa1419030 | 0.982917 | 2.420952e-156 | -8.615850e-47 |
| Msa0897330 | Msa1419030 | 0.808597 | 2.863784e-50 | -8.615850e-47 |
| Msa0969520 | Msa1419030 | 0.806035 | 1.000159e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419030 | MtrunA17_Chr1g0206471 | 85.000 | 260 | 33 | 1 | 1 | 260 | 1 | 254 | 8.48e-169 | 467 |
| Msa1419030 | MtrunA17_Chr7g0270401 | 52.400 | 250 | 113 | 1 | 11 | 260 | 10 | 253 | 4.19e-92 | 273 |
| Msa1419030 | MtrunA17_Chr1g0193281 | 46.632 | 193 | 92 | 4 | 9 | 196 | 8 | 194 | 1.93e-53 | 171 |
| Msa1419030 | MtrunA17_Chr1g0207921 | 56.250 | 112 | 45 | 1 | 13 | 124 | 9 | 116 | 6.85e-40 | 137 |
| Msa1419030 | MtrunA17_Chr7g0228461 | 56.780 | 118 | 50 | 1 | 60 | 176 | 1 | 118 | 3.68e-39 | 134 |
| Msa1419030 | MtrunA17_Chr7g0234161 | 57.407 | 108 | 46 | 0 | 137 | 244 | 16 | 123 | 2.31e-38 | 130 |
| Msa1419030 | MtrunA17_Chr6g0473661 | 30.263 | 228 | 139 | 5 | 38 | 257 | 229 | 444 | 7.63e-26 | 105 |
| Msa1419030 | MtrunA17_Chr8g0361581 | 53.571 | 84 | 33 | 1 | 9 | 92 | 8 | 85 | 3.40e-23 | 92.8 |
| Msa1419030 | MtrunA17_Chr3g0123031 | 55.056 | 89 | 22 | 2 | 172 | 260 | 1 | 71 | 4.98e-23 | 90.1 |
| Msa1419030 | MtrunA17_Chr5g0421721 | 47.674 | 86 | 39 | 1 | 9 | 94 | 8 | 87 | 3.00e-21 | 85.5 |
| Msa1419030 | MtrunA17_Chr5g0423431 | 51.852 | 81 | 33 | 1 | 6 | 86 | 5 | 79 | 3.48e-21 | 84.7 |
| Msa1419030 | MtrunA17_Chr8g0359311 | 45.312 | 64 | 35 | 0 | 197 | 260 | 17 | 80 | 3.50e-14 | 66.6 |
| Msa1419030 | MtrunA17_Chr3g0083241 | 61.538 | 52 | 20 | 0 | 1 | 52 | 54 | 105 | 5.07e-14 | 66.6 |
| Msa1419030 | MtrunA17_Chr6g0473651 | 30.201 | 149 | 85 | 3 | 115 | 256 | 22 | 158 | 2.44e-13 | 68.9 |
| Msa1419030 | MtrunA17_Chr6g0473651 | 28.767 | 146 | 92 | 2 | 61 | 206 | 228 | 361 | 2.51e-13 | 68.9 |
| Msa1419030 | MtrunA17_Chr7g0237161 | 38.272 | 81 | 50 | 0 | 180 | 260 | 3 | 83 | 3.83e-13 | 63.5 |
| Msa1419030 | MtrunA17_Chr4g0054601 | 32.099 | 81 | 55 | 0 | 72 | 152 | 2 | 82 | 1.65e-12 | 62.8 |
| Msa1419030 | MtrunA17_Chr4g0014301 | 59.459 | 37 | 15 | 0 | 16 | 52 | 44 | 80 | 8.33e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTTACAATTGTGTTTA+TGG | 0.148969 | tig0024663:+15471 | Msa1419030:CDS |
| AAAATTCATCGGTGGGTTAA+AGG | 0.246863 | tig0024663:-15554 | None:intergenic |
| TGGAGGTGGTTGGGAGCTTA+TGG | 0.295437 | tig0024663:+15934 | Msa1419030:CDS |
| ATAGATGTGGTGGACGAAAA+TGG | 0.317650 | tig0024663:+15854 | Msa1419030:CDS |
| CCACCTCCAATCTTGAAGTT+TGG | 0.329867 | tig0024663:-15930 | None:intergenic |
| ACAATTGTGTTTATGGGAAA+TGG | 0.340774 | tig0024663:+15478 | Msa1419030:CDS |
| ACTTCAAACTGATTGTGTTT+TGG | 0.342169 | tig0024663:-15364 | None:intergenic |
| TTTCAGGAACTTGCTGATAT+TGG | 0.344335 | tig0024663:+15794 | Msa1419030:intron |
| CAAAGTGCAGTTTGGTGCTT+GGG | 0.362374 | tig0024663:+15453 | Msa1419030:CDS |
| CTGTTCCGGTCACCCTTGAT+TGG | 0.370840 | tig0024663:+15593 | Msa1419030:CDS |
| GGTTCATCGCAATGCTGTTC+CGG | 0.371354 | tig0024663:+15579 | Msa1419030:CDS |
| CTCTCTTACAACATGTTGAT+TGG | 0.371414 | tig0024663:+14987 | Msa1419030:CDS |
| TCGATTTCGGTCACTGGGTT+GGG | 0.371780 | tig0024663:-15121 | None:intergenic |
| GTTGATCATCATATCGATTT+CGG | 0.376802 | tig0024663:-15134 | None:intergenic |
| CCCTTGATTGGTTTGTTCCA+AGG | 0.394705 | tig0024663:+15605 | Msa1419030:CDS |
| ACAAAGTGCAGTTTGGTGCT+TGG | 0.396984 | tig0024663:+15452 | Msa1419030:CDS |
| CTTCAAGATTGGAGGTGGTT+GGG | 0.399857 | tig0024663:+15925 | Msa1419030:CDS |
| ATCATATCGATTTCGGTCAC+TGG | 0.403353 | tig0024663:-15127 | None:intergenic |
| CAGGGGATTTATTTAACAAA+GGG | 0.413986 | tig0024663:+15406 | Msa1419030:CDS |
| TGGGTTACAATTGTGTTTAT+GGG | 0.417760 | tig0024663:+15472 | Msa1419030:CDS |
| ATTAGAATCAAGAACAGGTT+TGG | 0.423064 | tig0024663:+15511 | Msa1419030:CDS |
| CCATGTATGTCCTATACTTA+AGG | 0.423908 | tig0024663:-15165 | None:intergenic |
| ATCGATTTCGGTCACTGGGT+TGG | 0.430519 | tig0024663:-15122 | None:intergenic |
| AGCTTATGGTCAAGGCTAGA+AGG | 0.433486 | tig0024663:+15948 | Msa1419030:CDS |
| TCATCGGTGGGTTAAAGGTT+GGG | 0.437933 | tig0024663:-15549 | None:intergenic |
| ACACAATCAGTTTGAAGTGC+TGG | 0.440259 | tig0024663:+15369 | Msa1419030:CDS |
| AGAGCATTGCCACGTCGTTA+TGG | 0.443549 | tig0024663:-14968 | None:intergenic |
| GAGTAGCATATTGTTGGATC+TGG | 0.446877 | tig0024663:-15333 | None:intergenic |
| CCTGCTCCAAACTTCAAGAT+TGG | 0.453032 | tig0024663:+15914 | Msa1419030:CDS |
| TTCATCGGTGGGTTAAAGGT+TGG | 0.459097 | tig0024663:-15550 | None:intergenic |
| GATTTCTACAAAGTGCAGTT+TGG | 0.459805 | tig0024663:+15445 | Msa1419030:CDS |
| TTGGTATTAGAATCAAGAAC+AGG | 0.461579 | tig0024663:+15506 | Msa1419030:CDS |
| CCACCAGAGTAGCATATTGT+TGG | 0.466976 | tig0024663:-15339 | None:intergenic |
| ACGAGCTACGCCTTAAGTAT+AGG | 0.470020 | tig0024663:+15155 | Msa1419030:CDS |
| GCCTTGGAACAAACCAATCA+AGG | 0.473669 | tig0024663:-15606 | None:intergenic |
| GCTGTTGCTGATGTTGAAAG+TGG | 0.476443 | tig0024663:+15679 | Msa1419030:CDS |
| TTCACCTCGTCATGCATGAA+TGG | 0.476750 | tig0024663:-15628 | None:intergenic |
| TCGTCATGCATGAATGGCCT+TGG | 0.477431 | tig0024663:-15622 | None:intergenic |
| TTTATGGGAAATGGAAGGTT+TGG | 0.478943 | tig0024663:+15487 | Msa1419030:CDS |
| TGGACGAAAATGGCAACATA+TGG | 0.496896 | tig0024663:+15864 | Msa1419030:CDS |
| ACTTCAAGATTGGAGGTGGT+TGG | 0.500102 | tig0024663:+15924 | Msa1419030:CDS |
| CCAGGGGATTTATTTAACAA+AGG | 0.503834 | tig0024663:+15405 | Msa1419030:CDS |
| CCAATCTTGAAGTTTGGAGC+AGG | 0.514742 | tig0024663:-15924 | None:intergenic |
| GCTCCAAACTTCAAGATTGG+AGG | 0.519735 | tig0024663:+15917 | Msa1419030:CDS |
| AGTTTGAAGTGCTGGTTGAA+AGG | 0.537719 | tig0024663:+15377 | Msa1419030:CDS |
| GGATTTATTTAACAAAGGGC+TGG | 0.538099 | tig0024663:+15410 | Msa1419030:CDS |
| CCTTTGTTAAATAAATCCCC+TGG | 0.540457 | tig0024663:-15405 | None:intergenic |
| CCAAACTTCAAGATTGGAGG+TGG | 0.541019 | tig0024663:+15920 | Msa1419030:CDS |
| GATCCAACAATATGCTACTC+TGG | 0.547737 | tig0024663:+15336 | Msa1419030:CDS |
| TCATATCGATTTCGGTCACT+GGG | 0.559152 | tig0024663:-15126 | None:intergenic |
| TTGTGTTTATGGGAAATGGA+AGG | 0.564520 | tig0024663:+15482 | Msa1419030:CDS |
| ACAAACCAATCAAGGGTGAC+CGG | 0.568513 | tig0024663:-15598 | None:intergenic |
| GTCACTGGGTTGGGATCAAG+CGG | 0.568704 | tig0024663:-15112 | None:intergenic |
| GGATCTGGTCTCCAAAATCA+CGG | 0.574662 | tig0024663:-15318 | None:intergenic |
| AGCTTCGATAATAGATGTGG+TGG | 0.580845 | tig0024663:+15844 | Msa1419030:CDS |
| CGATGAACCCTAAAATTCAT+CGG | 0.585773 | tig0024663:-15565 | None:intergenic |
| GATCTGGTCTCCAAAATCAC+GGG | 0.590274 | tig0024663:-15317 | None:intergenic |
| GTTCACAGAGGGTGCACGTG+TGG | 0.592341 | tig0024663:+15970 | Msa1419030:CDS |
| CCTTAAGTATAGGACATACA+TGG | 0.594115 | tig0024663:+15165 | Msa1419030:CDS |
| TGGTTGGGAGCTTATGGTCA+AGG | 0.599583 | tig0024663:+15940 | Msa1419030:CDS |
| GAACCCTAAAATTCATCGGT+GGG | 0.600776 | tig0024663:-15561 | None:intergenic |
| ACTGCACTTTGTAGAAATCA+CGG | 0.602302 | tig0024663:-15441 | None:intergenic |
| GCATTGCCACGTCGTTATGG+TGG | 0.603259 | tig0024663:-14965 | None:intergenic |
| GCTGGTTGAAAGGAATAACC+AGG | 0.605399 | tig0024663:+15387 | Msa1419030:CDS |
| AAATCACGGGAAAACATCAT+CGG | 0.616708 | tig0024663:-15304 | None:intergenic |
| CCAACAATATGCTACTCTGG+TGG | 0.620541 | tig0024663:+15339 | Msa1419030:CDS |
| CCTTGGAACAAACCAATCAA+GGG | 0.627308 | tig0024663:-15605 | None:intergenic |
| TGAACCCTAAAATTCATCGG+TGG | 0.633118 | tig0024663:-15562 | None:intergenic |
| AGAAGCTTCGATAATAGATG+TGG | 0.657576 | tig0024663:+15841 | Msa1419030:CDS |
| GTTGACGTTGAATATGTGTG+TGG | 0.666000 | tig0024663:+15193 | Msa1419030:CDS |
| CTGGTTGAAAGGAATAACCA+GGG | 0.673257 | tig0024663:+15388 | Msa1419030:CDS |
| AAGGCTAGAAGGTTCACAGA+GGG | 0.686944 | tig0024663:+15959 | Msa1419030:CDS |
| AAGGCCATTCATGCATGACG+AGG | 0.690981 | tig0024663:+15624 | Msa1419030:CDS |
| GGCTTTCCACCATAACGACG+TGG | 0.712618 | tig0024663:+14959 | Msa1419030:CDS |
| TGGTTGAAAGGAATAACCAG+GGG | 0.751338 | tig0024663:+15389 | Msa1419030:CDS |
| CAAGGCTAGAAGGTTCACAG+AGG | 0.784898 | tig0024663:+15958 | Msa1419030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAAGAATAACAGA+TGG | - | tig0024663:15242-15261 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAAGAATAACAGA+TGG | - | tig0024663:15242-15261 | None:intergenic | 15.0% |
| !!! | GACATTTTTTATGTTTTTTC+AGG | + | tig0024663:15778-15797 | Msa1419030:intron | 20.0% |
| !!! | GACATTTTTTATGTTTTTTC+AGG | + | tig0024663:15778-15797 | Msa1419030:intron | 20.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | + | tig0024663:15052-15071 | Msa1419030:intron | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | - | tig0024663:15238-15257 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | - | tig0024663:15265-15284 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | - | tig0024663:15266-15285 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | + | tig0024663:15267-15286 | Msa1419030:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | + | tig0024663:15268-15287 | Msa1419030:intron | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | + | tig0024663:15052-15071 | Msa1419030:intron | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | - | tig0024663:15238-15257 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | - | tig0024663:15265-15284 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | - | tig0024663:15266-15285 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | + | tig0024663:15267-15286 | Msa1419030:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | + | tig0024663:15268-15287 | Msa1419030:intron | 25.0% |
| ATCTTCAAACCGCAAAAATA+AGG | - | tig0024663:15064-15083 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | - | tig0024663:15137-15156 | None:intergenic | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | - | tig0024663:15367-15386 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | + | tig0024663:15406-15425 | Msa1419030:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | + | tig0024663:15471-15490 | Msa1419030:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | + | tig0024663:15472-15491 | Msa1419030:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | + | tig0024663:15478-15497 | Msa1419030:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | + | tig0024663:15506-15525 | Msa1419030:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | + | tig0024663:15511-15530 | Msa1419030:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | + | tig0024663:15687-15706 | Msa1419030:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | + | tig0024663:15751-15770 | Msa1419030:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | + | tig0024663:15808-15827 | Msa1419030:CDS | 30.0% |
| ATCTTCAAACCGCAAAAATA+AGG | - | tig0024663:15064-15083 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | - | tig0024663:15137-15156 | None:intergenic | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | - | tig0024663:15367-15386 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | + | tig0024663:15406-15425 | Msa1419030:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | + | tig0024663:15471-15490 | Msa1419030:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | + | tig0024663:15472-15491 | Msa1419030:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | + | tig0024663:15478-15497 | Msa1419030:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | + | tig0024663:15506-15525 | Msa1419030:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | + | tig0024663:15511-15530 | Msa1419030:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | + | tig0024663:15687-15706 | Msa1419030:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | + | tig0024663:15751-15770 | Msa1419030:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | + | tig0024663:15808-15827 | Msa1419030:CDS | 30.0% |
| CTCTCTTACAACATGTTGAT+TGG | + | tig0024663:14987-15006 | Msa1419030:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | - | tig0024663:15168-15187 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | + | tig0024663:15165-15184 | Msa1419030:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | + | tig0024663:15204-15223 | Msa1419030:CDS | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | - | tig0024663:15307-15326 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | + | tig0024663:15307-15326 | Msa1419030:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | - | tig0024663:15408-15427 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | + | tig0024663:15405-15424 | Msa1419030:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | + | tig0024663:15410-15429 | Msa1419030:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | - | tig0024663:15444-15463 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | + | tig0024663:15445-15464 | Msa1419030:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | + | tig0024663:15482-15501 | Msa1419030:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | + | tig0024663:15487-15506 | Msa1419030:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | - | tig0024663:15557-15576 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | + | tig0024663:15557-15576 | Msa1419030:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | + | tig0024663:15558-15577 | Msa1419030:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | - | tig0024663:15568-15587 | None:intergenic | 35.0% | |
| !! | TTTCAGGAACTTGCTGATAT+TGG | + | tig0024663:15794-15813 | Msa1419030:intron | 35.0% |
| AGAAGCTTCGATAATAGATG+TGG | + | tig0024663:15841-15860 | Msa1419030:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | - | tig0024663:15897-15916 | None:intergenic | 35.0% | |
| CTCTCTTACAACATGTTGAT+TGG | + | tig0024663:14987-15006 | Msa1419030:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | - | tig0024663:15168-15187 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | + | tig0024663:15165-15184 | Msa1419030:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | + | tig0024663:15204-15223 | Msa1419030:CDS | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | - | tig0024663:15307-15326 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | + | tig0024663:15307-15326 | Msa1419030:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | - | tig0024663:15408-15427 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | + | tig0024663:15405-15424 | Msa1419030:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | + | tig0024663:15410-15429 | Msa1419030:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | - | tig0024663:15444-15463 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | + | tig0024663:15445-15464 | Msa1419030:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | + | tig0024663:15482-15501 | Msa1419030:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | + | tig0024663:15487-15506 | Msa1419030:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | - | tig0024663:15557-15576 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | + | tig0024663:15557-15576 | Msa1419030:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | + | tig0024663:15558-15577 | Msa1419030:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | - | tig0024663:15568-15587 | None:intergenic | 35.0% | |
| !! | TTTCAGGAACTTGCTGATAT+TGG | + | tig0024663:15794-15813 | Msa1419030:intron | 35.0% |
| AGAAGCTTCGATAATAGATG+TGG | + | tig0024663:15841-15860 | Msa1419030:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | - | tig0024663:15897-15916 | None:intergenic | 35.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | + | tig0024663:15070-15089 | Msa1419030:intron | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | - | tig0024663:15129-15148 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | - | tig0024663:15130-15149 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | + | tig0024663:15193-15212 | Msa1419030:CDS | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | - | tig0024663:15336-15355 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | + | tig0024663:15336-15355 | Msa1419030:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | + | tig0024663:15369-15388 | Msa1419030:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | + | tig0024663:15377-15396 | Msa1419030:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | + | tig0024663:15388-15407 | Msa1419030:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | + | tig0024663:15389-15408 | Msa1419030:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | - | tig0024663:15564-15583 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | - | tig0024663:15565-15584 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | - | tig0024663:15608-15627 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | + | tig0024663:15814-15833 | Msa1419030:CDS | 40.0% |
| AGCTTCGATAATAGATGTGG+TGG | + | tig0024663:15844-15863 | Msa1419030:CDS | 40.0% | |
| !! | ATAGATGTGGTGGACGAAAA+TGG | + | tig0024663:15854-15873 | Msa1419030:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | + | tig0024663:15864-15883 | Msa1419030:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | - | tig0024663:15898-15917 | None:intergenic | 40.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | + | tig0024663:15070-15089 | Msa1419030:intron | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | - | tig0024663:15129-15148 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | - | tig0024663:15130-15149 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | + | tig0024663:15193-15212 | Msa1419030:CDS | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | - | tig0024663:15336-15355 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | + | tig0024663:15336-15355 | Msa1419030:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | + | tig0024663:15369-15388 | Msa1419030:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | + | tig0024663:15377-15396 | Msa1419030:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | + | tig0024663:15388-15407 | Msa1419030:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | + | tig0024663:15389-15408 | Msa1419030:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | - | tig0024663:15564-15583 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | - | tig0024663:15565-15584 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | - | tig0024663:15608-15627 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | + | tig0024663:15814-15833 | Msa1419030:CDS | 40.0% |
| AGCTTCGATAATAGATGTGG+TGG | + | tig0024663:15844-15863 | Msa1419030:CDS | 40.0% | |
| !! | ATAGATGTGGTGGACGAAAA+TGG | + | tig0024663:15854-15873 | Msa1419030:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | + | tig0024663:15864-15883 | Msa1419030:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | - | tig0024663:15898-15917 | None:intergenic | 40.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | + | tig0024663:15155-15174 | Msa1419030:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+GGG | - | tig0024663:15320-15339 | None:intergenic | 45.0% | |
| GGATCTGGTCTCCAAAATCA+CGG | - | tig0024663:15321-15340 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | - | tig0024663:15342-15361 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | + | tig0024663:15339-15358 | Msa1419030:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | + | tig0024663:15387-15406 | Msa1419030:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | + | tig0024663:15452-15471 | Msa1419030:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | + | tig0024663:15453-15472 | Msa1419030:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | - | tig0024663:15552-15571 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | - | tig0024663:15553-15572 | None:intergenic | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | - | tig0024663:15601-15620 | None:intergenic | 45.0% | |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | + | tig0024663:15605-15624 | Msa1419030:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | - | tig0024663:15609-15628 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | - | tig0024663:15631-15650 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | + | tig0024663:15679-15698 | Msa1419030:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | + | tig0024663:15889-15908 | Msa1419030:CDS | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | - | tig0024663:15917-15936 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | + | tig0024663:15914-15933 | Msa1419030:CDS | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | + | tig0024663:15917-15936 | Msa1419030:CDS | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | - | tig0024663:15923-15942 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | + | tig0024663:15920-15939 | Msa1419030:CDS | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | + | tig0024663:15924-15943 | Msa1419030:CDS | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | + | tig0024663:15925-15944 | Msa1419030:CDS | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | + | tig0024663:15948-15967 | Msa1419030:CDS | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | + | tig0024663:15959-15978 | Msa1419030:CDS | 45.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | + | tig0024663:15155-15174 | Msa1419030:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+GGG | - | tig0024663:15320-15339 | None:intergenic | 45.0% | |
| GGATCTGGTCTCCAAAATCA+CGG | - | tig0024663:15321-15340 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | - | tig0024663:15342-15361 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | + | tig0024663:15339-15358 | Msa1419030:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | + | tig0024663:15387-15406 | Msa1419030:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | + | tig0024663:15452-15471 | Msa1419030:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | + | tig0024663:15453-15472 | Msa1419030:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | - | tig0024663:15552-15571 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | - | tig0024663:15553-15572 | None:intergenic | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | - | tig0024663:15601-15620 | None:intergenic | 45.0% | |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | + | tig0024663:15605-15624 | Msa1419030:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | - | tig0024663:15609-15628 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | - | tig0024663:15631-15650 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | + | tig0024663:15679-15698 | Msa1419030:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | + | tig0024663:15889-15908 | Msa1419030:CDS | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | - | tig0024663:15917-15936 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | + | tig0024663:15914-15933 | Msa1419030:CDS | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | + | tig0024663:15917-15936 | Msa1419030:CDS | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | - | tig0024663:15923-15942 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | + | tig0024663:15920-15939 | Msa1419030:CDS | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | + | tig0024663:15924-15943 | Msa1419030:CDS | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | + | tig0024663:15925-15944 | Msa1419030:CDS | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | + | tig0024663:15948-15967 | Msa1419030:CDS | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | + | tig0024663:15959-15978 | Msa1419030:CDS | 45.0% | |
| !! | AGAGCATTGCCACGTCGTTA+TGG | - | tig0024663:14971-14990 | None:intergenic | 50.0% |
| TCGATTTCGGTCACTGGGTT+GGG | - | tig0024663:15124-15143 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | - | tig0024663:15125-15144 | None:intergenic | 50.0% |
| GGTTCATCGCAATGCTGTTC+CGG | + | tig0024663:15579-15598 | Msa1419030:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | - | tig0024663:15625-15644 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | + | tig0024663:15624-15643 | Msa1419030:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | + | tig0024663:15940-15959 | Msa1419030:CDS | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | + | tig0024663:15958-15977 | Msa1419030:CDS | 50.0% | |
| !! | AGAGCATTGCCACGTCGTTA+TGG | - | tig0024663:14971-14990 | None:intergenic | 50.0% |
| TCGATTTCGGTCACTGGGTT+GGG | - | tig0024663:15124-15143 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | - | tig0024663:15125-15144 | None:intergenic | 50.0% |
| GGTTCATCGCAATGCTGTTC+CGG | + | tig0024663:15579-15598 | Msa1419030:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | - | tig0024663:15625-15644 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | + | tig0024663:15624-15643 | Msa1419030:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | + | tig0024663:15940-15959 | Msa1419030:CDS | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | + | tig0024663:15958-15977 | Msa1419030:CDS | 50.0% | |
| GGCTTTCCACCATAACGACG+TGG | + | tig0024663:14959-14978 | Msa1419030:CDS | 55.0% | |
| GCATTGCCACGTCGTTATGG+TGG | - | tig0024663:14968-14987 | None:intergenic | 55.0% | |
| ! | GTCACTGGGTTGGGATCAAG+CGG | - | tig0024663:15115-15134 | None:intergenic | 55.0% |
| CTGTTCCGGTCACCCTTGAT+TGG | + | tig0024663:15593-15612 | Msa1419030:CDS | 55.0% | |
| TGGAGGTGGTTGGGAGCTTA+TGG | + | tig0024663:15934-15953 | Msa1419030:CDS | 55.0% | |
| GGCTTTCCACCATAACGACG+TGG | + | tig0024663:14959-14978 | Msa1419030:CDS | 55.0% | |
| GCATTGCCACGTCGTTATGG+TGG | - | tig0024663:14968-14987 | None:intergenic | 55.0% | |
| ! | GTCACTGGGTTGGGATCAAG+CGG | - | tig0024663:15115-15134 | None:intergenic | 55.0% |
| CTGTTCCGGTCACCCTTGAT+TGG | + | tig0024663:15593-15612 | Msa1419030:CDS | 55.0% | |
| TGGAGGTGGTTGGGAGCTTA+TGG | + | tig0024663:15934-15953 | Msa1419030:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024663 | gene | 14957 | 15991 | 14957 | ID=Msa1419030;Name=Msa1419030 |
| tig0024663 | mRNA | 14957 | 15991 | 14957 | ID=Msa1419030-mRNA-1;Parent=Msa1419030;Name=Msa1419030-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.5|1|1|4|0|260 |
| tig0024663 | exon | 14957 | 15008 | 14957 | ID=Msa1419030-mRNA-1:exon:697;Parent=Msa1419030-mRNA-1 |
| tig0024663 | exon | 15110 | 15225 | 15110 | ID=Msa1419030-mRNA-1:exon:698;Parent=Msa1419030-mRNA-1 |
| tig0024663 | exon | 15289 | 15708 | 15289 | ID=Msa1419030-mRNA-1:exon:699;Parent=Msa1419030-mRNA-1 |
| tig0024663 | exon | 15800 | 15991 | 15800 | ID=Msa1419030-mRNA-1:exon:700;Parent=Msa1419030-mRNA-1 |
| tig0024663 | CDS | 14957 | 15008 | 14957 | ID=Msa1419030-mRNA-1:cds;Parent=Msa1419030-mRNA-1 |
| tig0024663 | CDS | 15110 | 15225 | 15110 | ID=Msa1419030-mRNA-1:cds;Parent=Msa1419030-mRNA-1 |
| tig0024663 | CDS | 15289 | 15708 | 15289 | ID=Msa1419030-mRNA-1:cds;Parent=Msa1419030-mRNA-1 |
| tig0024663 | CDS | 15800 | 15991 | 15800 | ID=Msa1419030-mRNA-1:cds;Parent=Msa1419030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
