Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735080 | KEH15859.1 | 42.857 | 133 | 50 | 7 | 8 | 124 | 2 | 124 | 2.97e-14 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735080 | A0A072TEB8 | 42.857 | 133 | 50 | 7 | 8 | 124 | 2 | 124 | 1.42e-14 | 83.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014330 | Msa0735080 | 0.801523 | 8.650407e-49 | -8.615850e-47 |
| Msa0016570 | Msa0735080 | 0.810640 | 1.042349e-50 | -8.615850e-47 |
| Msa0726140 | Msa0735080 | 0.835245 | 1.876906e-56 | -8.615850e-47 |
| Msa0735080 | Msa0743810 | 0.852253 | 5.212414e-61 | -8.615850e-47 |
| Msa0735080 | Msa0745060 | 0.824111 | 9.632842e-54 | -8.615850e-47 |
| Msa0735080 | Msa0777870 | 0.837090 | 6.379447e-57 | -8.615850e-47 |
| Msa0735080 | Msa0783160 | 0.824944 | 6.132254e-54 | -8.615850e-47 |
| Msa0735080 | Msa0825860 | 0.831373 | 1.732093e-55 | -8.615850e-47 |
| Msa0735080 | Msa0846350 | 0.811324 | 7.410198e-51 | -8.615850e-47 |
| Msa0735080 | Msa0854980 | 0.833084 | 6.531927e-56 | -8.615850e-47 |
| Msa0735080 | Msa0865320 | 0.814632 | 1.395694e-51 | -8.615850e-47 |
| Msa0735080 | Msa0957860 | 0.824633 | 7.262573e-54 | -8.615850e-47 |
| Msa0735080 | Msa0957960 | 0.824635 | 7.255338e-54 | -8.615850e-47 |
| Msa0735080 | Msa0989060 | 0.858042 | 1.080933e-62 | -8.615850e-47 |
| Msa0735080 | Msa1011610 | 0.801129 | 1.041780e-48 | -8.615850e-47 |
| Msa0735080 | Msa1016280 | 0.817794 | 2.740824e-52 | -8.615850e-47 |
| Msa0735080 | Msa1023450 | 0.809988 | 1.441012e-50 | -8.615850e-47 |
| Msa0735080 | Msa1025360 | 0.826396 | 2.775586e-54 | -8.615850e-47 |
| Msa0735080 | Msa1025370 | 0.839754 | 1.311750e-57 | -8.615850e-47 |
| Msa0735080 | Msa1044830 | 0.837722 | 4.394386e-57 | -8.615850e-47 |
| Msa0735080 | Msa1044840 | 0.826511 | 2.606559e-54 | -8.615850e-47 |
| Msa0735080 | Msa1092990 | 0.830304 | 3.165942e-55 | -8.615850e-47 |
| Msa0735080 | Msa1100980 | 0.834350 | 3.153556e-56 | -8.615850e-47 |
| Msa0735080 | Msa1135740 | 0.813977 | 1.947308e-51 | -8.615850e-47 |
| Msa0735080 | Msa1146110 | 0.817965 | 2.507934e-52 | -8.615850e-47 |
| Msa0735080 | Msa1150370 | 0.820834 | 5.563905e-53 | -8.615850e-47 |
| Msa0735080 | Msa1182090 | 0.806886 | 6.614448e-50 | -8.615850e-47 |
| Msa0735080 | Msa1187940 | 0.812579 | 3.950059e-51 | -8.615850e-47 |
| Msa0735080 | Msa1187950 | 0.816012 | 6.885253e-52 | -8.615850e-47 |
| Msa0735080 | Msa1192640 | 0.801959 | 7.040603e-49 | -8.615850e-47 |
| Msa0735080 | Msa1230430 | 0.803359 | 3.619954e-49 | -8.615850e-47 |
| Msa0735080 | Msa1246880 | 0.808712 | 2.707169e-50 | -8.615850e-47 |
| Msa0735080 | Msa1260100 | 0.806258 | 8.978107e-50 | -8.615850e-47 |
| Msa0735080 | Msa1269670 | 0.818930 | 1.516100e-52 | -8.615850e-47 |
| Msa0735080 | Msa1270230 | 0.817681 | 2.907142e-52 | -8.615850e-47 |
| Msa0735080 | Msa1270240 | 0.827734 | 1.328365e-54 | -8.615850e-47 |
| Msa0735080 | Msa1270270 | 0.820728 | 5.882636e-53 | -8.615850e-47 |
| Msa0735080 | Msa1273230 | 0.825962 | 3.520173e-54 | -8.615850e-47 |
| Msa0735080 | Msa1283330 | 0.839451 | 1.572657e-57 | -8.615850e-47 |
| Msa0735080 | Msa1285930 | 0.828053 | 1.113106e-54 | -8.615850e-47 |
| Msa0735080 | Msa1287800 | 0.826944 | 2.053866e-54 | -8.615850e-47 |
| Msa0735080 | Msa1287810 | 0.838656 | 2.525652e-57 | -8.615850e-47 |
| Msa0735080 | Msa1386330 | 0.809144 | 2.188007e-50 | -8.615850e-47 |
| Msa0735080 | Msa1402790 | 0.811043 | 8.528770e-51 | -8.615850e-47 |
| Msa0735080 | Msa1404000 | 0.833471 | 5.232523e-56 | -8.615850e-47 |
| Msa0735080 | Msa1415310 | 0.816219 | 6.191823e-52 | -8.615850e-47 |
| Msa0735080 | Msa1422180 | 0.829812 | 4.174871e-55 | -8.615850e-47 |
| Msa0123810 | Msa0735080 | 0.825553 | 4.401380e-54 | -8.615850e-47 |
| Msa0145750 | Msa0735080 | 0.822489 | 2.304789e-53 | -8.615850e-47 |
| Msa0227480 | Msa0735080 | 0.806895 | 6.586775e-50 | -8.615850e-47 |
| Msa0232850 | Msa0735080 | 0.832090 | 1.152631e-55 | -8.615850e-47 |
| Msa0235140 | Msa0735080 | 0.807924 | 3.985338e-50 | -8.615850e-47 |
| Msa0384800 | Msa0735080 | 0.836044 | 1.178487e-56 | -8.615850e-47 |
| Msa0414410 | Msa0735080 | 0.807717 | 4.410448e-50 | -8.615850e-47 |
| Msa0414420 | Msa0735080 | 0.829064 | 6.343962e-55 | -8.615850e-47 |
| Msa0452900 | Msa0735080 | 0.834572 | 2.772999e-56 | -8.615850e-47 |
| Msa0454910 | Msa0735080 | 0.836604 | 8.489670e-57 | -8.615850e-47 |
| Msa0267000 | Msa0735080 | 0.848637 | 5.398691e-60 | -8.615850e-47 |
| Msa0267010 | Msa0735080 | 0.832788 | 7.737917e-56 | -8.615850e-47 |
| Msa0270520 | Msa0735080 | 0.823123 | 1.640443e-53 | -8.615850e-47 |
| Msa0342240 | Msa0735080 | 0.815597 | 8.518984e-52 | -8.615850e-47 |
| Msa0360510 | Msa0735080 | 0.806261 | 8.962716e-50 | -8.615850e-47 |
| Msa0491590 | Msa0735080 | 0.806051 | 9.922415e-50 | -8.615850e-47 |
| Msa0502760 | Msa0735080 | 0.802930 | 4.440419e-49 | -8.615850e-47 |
| Msa0506270 | Msa0735080 | 0.807865 | 4.102302e-50 | -8.615850e-47 |
| Msa0564890 | Msa0735080 | 0.823098 | 1.663360e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAGTCTCTTCAACAATTA+TGG | 0.163477 | 5_1:-50072420 | None:intergenic |
| GTTCTAGGATTAGATAAAAT+TGG | 0.170332 | 5_1:-50071450 | None:intergenic |
| ATACATCATTGTTGAGAATA+TGG | 0.231277 | 5_1:-50072715 | None:intergenic |
| TGACTTGTAGAATCTGAAAT+TGG | 0.262283 | 5_1:-50072541 | None:intergenic |
| CCTGCTTCATATTCATCTTC+TGG | 0.266721 | 5_1:-50071687 | None:intergenic |
| TGATTTCTCATTTCAGCTCT+TGG | 0.276420 | 5_1:-50072581 | None:intergenic |
| ATTTCAGCTCTTGGACTGAT+TGG | 0.308959 | 5_1:-50072572 | None:intergenic |
| CCAGTCTCTTCAACAATTAT+GGG | 0.339084 | 5_1:-50072419 | None:intergenic |
| GAGCTACGCCTTGAGATTAC+AGG | 0.346568 | 5_1:-50071498 | None:intergenic |
| TGGATTGAATAACATTTGAT+TGG | 0.352381 | 5_1:-50071563 | None:intergenic |
| CAGTGCCTGAGCGAAAGTTT+TGG | 0.356303 | 5_1:-50071583 | None:intergenic |
| CTAGGCATTTCCAAGGAATA+AGG | 0.365093 | 5_1:-50071377 | None:intergenic |
| TTCTAGGATTAGATAAAATT+GGG | 0.401873 | 5_1:-50071449 | None:intergenic |
| AGAACAAGACTCAAGCTCTC+AGG | 0.436888 | 5_1:+50072664 | Msa0735080:CDS |
| TGACAACTCACCTTATTCCT+TGG | 0.449191 | 5_1:+50071367 | Msa0735080:CDS |
| CCCATAATTGTTGAAGAGAC+TGG | 0.453224 | 5_1:+50072419 | Msa0735080:CDS |
| AAGAGTCCTGCAGCTGAAGT+TGG | 0.460819 | 5_1:+50072476 | Msa0735080:CDS |
| ACGCCTTGAGATTACAGGTT+CGG | 0.477436 | 5_1:-50071493 | None:intergenic |
| TCAATCCAAAACTTTCGCTC+AGG | 0.482152 | 5_1:+50071578 | Msa0735080:CDS |
| GGATTGAATAACATTTGATT+GGG | 0.490449 | 5_1:-50071562 | None:intergenic |
| AGGAATAAGGTGAGTTGTCA+TGG | 0.498928 | 5_1:-50071364 | None:intergenic |
| GTTCATGTTGAAGTTAGAGA+TGG | 0.504206 | 5_1:+50072365 | Msa0735080:CDS |
| CTGGTTCCAACTTCAGCTGC+AGG | 0.519104 | 5_1:-50072482 | None:intergenic |
| TCTCCTTTGATAACTGGCTG+AGG | 0.530189 | 5_1:-50071645 | None:intergenic |
| CCAGAAGATGAATATGAAGC+AGG | 0.537664 | 5_1:+50071687 | Msa0735080:CDS |
| ATTAAACAAAGAACAGAAGA+AGG | 0.548584 | 5_1:+50072343 | Msa0735080:intron |
| GGCTGAGGTAACTGTGAAGA+GGG | 0.553943 | 5_1:-50071630 | None:intergenic |
| ACGGTGGATCTGCGTCCACT+AGG | 0.565646 | 5_1:-50071395 | None:intergenic |
| GAACAAGACTCAAGCTCTCA+GGG | 0.568752 | 5_1:+50072665 | Msa0735080:CDS |
| GCAGCTGAAGTTGGAACCAG+TGG | 0.577937 | 5_1:+50072485 | Msa0735080:CDS |
| TTGAGTAGCATCTACAAACT+CGG | 0.605315 | 5_1:-50072690 | None:intergenic |
| TTACCTCAGCCAGTTATCAA+AGG | 0.608301 | 5_1:+50071642 | Msa0735080:CDS |
| TGGCTGAGGTAACTGTGAAG+AGG | 0.610947 | 5_1:-50071631 | None:intergenic |
| TATTCCTTGGAAATGCCTAG+TGG | 0.618453 | 5_1:+50071380 | Msa0735080:CDS |
| GCACCGAACCTGTAATCTCA+AGG | 0.632057 | 5_1:+50071490 | Msa0735080:CDS |
| GCGTCCACTAGGCATTTCCA+AGG | 0.638400 | 5_1:-50071384 | None:intergenic |
| GTGAAGAGGGAATATCACAA+AGG | 0.699519 | 5_1:-50071617 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTAGGATTAGATAAAATT+GGG | - | chr5_1:50071452-50071471 | None:intergenic | 20.0% |
| !!! | TGTTCTTTGTTTAATTGTTT+TGG | - | chr5_1:50072338-50072357 | None:intergenic | 20.0% |
| !!! | TTCTAGGATTAGATAAAATT+GGG | - | chr5_1:50071452-50071471 | None:intergenic | 20.0% |
| !!! | TGTTCTTTGTTTAATTGTTT+TGG | - | chr5_1:50072338-50072357 | None:intergenic | 20.0% |
| !!! | GTTCTAGGATTAGATAAAAT+TGG | - | chr5_1:50071453-50071472 | None:intergenic | 25.0% |
| !! | ATTTTATCTAATCCTAGAAC+TGG | + | chr5_1:50071453-50071472 | Msa0735080:CDS | 25.0% |
| !!! | TTGTTGGTTTTGTTATGTTT+TGG | - | chr5_1:50071533-50071552 | None:intergenic | 25.0% |
| ! | GGATTGAATAACATTTGATT+GGG | - | chr5_1:50071565-50071584 | None:intergenic | 25.0% |
| ! | TGGATTGAATAACATTTGAT+TGG | - | chr5_1:50071566-50071585 | None:intergenic | 25.0% |
| !! | GTAAATGTCTTTTGTCTATT+TGG | + | chr5_1:50071790-50071809 | Msa0735080:intron | 25.0% |
| ! | TTGTCTATTTGGAAGAATTT+AGG | + | chr5_1:50071801-50071820 | Msa0735080:intron | 25.0% |
| !!! | TGAATTTGTTTTTTCCAGTT+TGG | + | chr5_1:50071860-50071879 | Msa0735080:intron | 25.0% |
| !!! | GTGGAAGTATTTTGTAAATT+AGG | - | chr5_1:50071972-50071991 | None:intergenic | 25.0% |
| ! | GCAATAGTAAAAAATATCCT+TGG | - | chr5_1:50072044-50072063 | None:intergenic | 25.0% |
| ! | ATTAAACAAAGAACAGAAGA+AGG | + | chr5_1:50072343-50072362 | Msa0735080:intron | 25.0% |
| !!! | GTTCTAGGATTAGATAAAAT+TGG | - | chr5_1:50071453-50071472 | None:intergenic | 25.0% |
| !! | ATTTTATCTAATCCTAGAAC+TGG | + | chr5_1:50071453-50071472 | Msa0735080:CDS | 25.0% |
| !!! | TTGTTGGTTTTGTTATGTTT+TGG | - | chr5_1:50071533-50071552 | None:intergenic | 25.0% |
| ! | GGATTGAATAACATTTGATT+GGG | - | chr5_1:50071565-50071584 | None:intergenic | 25.0% |
| ! | TGGATTGAATAACATTTGAT+TGG | - | chr5_1:50071566-50071585 | None:intergenic | 25.0% |
| !! | GTAAATGTCTTTTGTCTATT+TGG | + | chr5_1:50071790-50071809 | Msa0735080:intron | 25.0% |
| ! | TTGTCTATTTGGAAGAATTT+AGG | + | chr5_1:50071801-50071820 | Msa0735080:intron | 25.0% |
| !!! | TGAATTTGTTTTTTCCAGTT+TGG | + | chr5_1:50071860-50071879 | Msa0735080:intron | 25.0% |
| !!! | GTGGAAGTATTTTGTAAATT+AGG | - | chr5_1:50071972-50071991 | None:intergenic | 25.0% |
| ! | GCAATAGTAAAAAATATCCT+TGG | - | chr5_1:50072044-50072063 | None:intergenic | 25.0% |
| ! | ATTAAACAAAGAACAGAAGA+AGG | + | chr5_1:50072343-50072362 | Msa0735080:intron | 25.0% |
| !! | AGATTTTCTCCTTTGATAAC+TGG | - | chr5_1:50071654-50071673 | None:intergenic | 30.0% |
| ATGAAGATTGAATTTGCAAG+AGG | - | chr5_1:50071718-50071737 | None:intergenic | 30.0% | |
| TTTGGAAGAATTTAGGTAAG+TGG | + | chr5_1:50071808-50071827 | Msa0735080:intron | 30.0% | |
| TTGGAAGAATTTAGGTAAGT+GGG | + | chr5_1:50071809-50071828 | Msa0735080:intron | 30.0% | |
| !!! | ATTTGTTTTTTCCAGTTTGG+AGG | + | chr5_1:50071863-50071882 | Msa0735080:intron | 30.0% |
| TTTACTATTGCAAGTAGTGT+TGG | + | chr5_1:50072053-50072072 | Msa0735080:intron | 30.0% | |
| AACACTGTATCTTAATTCCT+TGG | - | chr5_1:50072171-50072190 | None:intergenic | 30.0% | |
| TGTGTTCATTGCAAGAAAAT+AGG | + | chr5_1:50072254-50072273 | Msa0735080:intron | 30.0% | |
| GTGTTCATTGCAAGAAAATA+GGG | + | chr5_1:50072255-50072274 | Msa0735080:intron | 30.0% | |
| TGTCAATAAAACAAATGTGC+AGG | + | chr5_1:50072301-50072320 | Msa0735080:intron | 30.0% | |
| !! | ACTCTTTTGTTTGTTCTTGT+TGG | - | chr5_1:50072462-50072481 | None:intergenic | 30.0% |
| ! | TGACTTGTAGAATCTGAAAT+TGG | - | chr5_1:50072544-50072563 | None:intergenic | 30.0% |
| !! | AGATTTTCTCCTTTGATAAC+TGG | - | chr5_1:50071654-50071673 | None:intergenic | 30.0% |
| ATGAAGATTGAATTTGCAAG+AGG | - | chr5_1:50071718-50071737 | None:intergenic | 30.0% | |
| TTTGGAAGAATTTAGGTAAG+TGG | + | chr5_1:50071808-50071827 | Msa0735080:intron | 30.0% | |
| TTGGAAGAATTTAGGTAAGT+GGG | + | chr5_1:50071809-50071828 | Msa0735080:intron | 30.0% | |
| !!! | ATTTGTTTTTTCCAGTTTGG+AGG | + | chr5_1:50071863-50071882 | Msa0735080:intron | 30.0% |
| TTTACTATTGCAAGTAGTGT+TGG | + | chr5_1:50072053-50072072 | Msa0735080:intron | 30.0% | |
| AACACTGTATCTTAATTCCT+TGG | - | chr5_1:50072171-50072190 | None:intergenic | 30.0% | |
| TGTGTTCATTGCAAGAAAAT+AGG | + | chr5_1:50072254-50072273 | Msa0735080:intron | 30.0% | |
| GTGTTCATTGCAAGAAAATA+GGG | + | chr5_1:50072255-50072274 | Msa0735080:intron | 30.0% | |
| TGTCAATAAAACAAATGTGC+AGG | + | chr5_1:50072301-50072320 | Msa0735080:intron | 30.0% | |
| !! | ACTCTTTTGTTTGTTCTTGT+TGG | - | chr5_1:50072462-50072481 | None:intergenic | 30.0% |
| ! | TGACTTGTAGAATCTGAAAT+TGG | - | chr5_1:50072544-50072563 | None:intergenic | 30.0% |
| !!! | AGGGTTTTTTGTGAATCAGA+CGG | - | chr5_1:50071417-50071436 | None:intergenic | 35.0% |
| ! | AATTGGGTTCGATTTTGCTA+GGG | - | chr5_1:50071436-50071455 | None:intergenic | 35.0% |
| ! | AAATTGGGTTCGATTTTGCT+AGG | - | chr5_1:50071437-50071456 | None:intergenic | 35.0% |
| !!! | TTGTTTTGAGTTCCAGTTCT+AGG | - | chr5_1:50071468-50071487 | None:intergenic | 35.0% |
| !!! | GATTGGGTTGTTTTGTTTGT+TGG | - | chr5_1:50071549-50071568 | None:intergenic | 35.0% |
| AGATGAATATGAAGCAGGTA+TGG | + | chr5_1:50071692-50071711 | Msa0735080:intron | 35.0% | |
| CAAATTCAATCTTCATGCCA+GGG | + | chr5_1:50071722-50071741 | Msa0735080:intron | 35.0% | |
| TGGAAGAATTTAGGTAAGTG+GGG | + | chr5_1:50071810-50071829 | Msa0735080:intron | 35.0% | |
| ATGGTCTTTCACAGGAATAT+TGG | + | chr5_1:50072015-50072034 | Msa0735080:intron | 35.0% | |
| ! | TGTTCTGTCTATCATTGGTT+TGG | - | chr5_1:50072108-50072127 | None:intergenic | 35.0% |
| CCAAATGTTCTGTCTATCAT+TGG | - | chr5_1:50072113-50072132 | None:intergenic | 35.0% | |
| CCAATGATAGACAGAACATT+TGG | + | chr5_1:50072110-50072129 | Msa0735080:intron | 35.0% | |
| GGAATTAAGATACAGTGTTC+TGG | + | chr5_1:50072172-50072191 | Msa0735080:intron | 35.0% | |
| ATTAAGATACAGTGTTCTGG+TGG | + | chr5_1:50072175-50072194 | Msa0735080:intron | 35.0% | |
| AAAGGGATATGCTTTCTTTG+TGG | + | chr5_1:50072202-50072221 | Msa0735080:intron | 35.0% | |
| TTGCAATGAACACAATAGTC+AGG | - | chr5_1:50072248-50072267 | None:intergenic | 35.0% | |
| ! | CAAGAAAATAGGGCATTATG+TGG | + | chr5_1:50072265-50072284 | Msa0735080:intron | 35.0% |
| GTTCATGTTGAAGTTAGAGA+TGG | + | chr5_1:50072365-50072384 | Msa0735080:CDS | 35.0% | |
| TAGAGATGGAAGAAAAAAGC+AGG | + | chr5_1:50072379-50072398 | Msa0735080:CDS | 35.0% | |
| AGAGATGGAAGAAAAAAGCA+GGG | + | chr5_1:50072380-50072399 | Msa0735080:CDS | 35.0% | |
| CCAGTCTCTTCAACAATTAT+GGG | - | chr5_1:50072422-50072441 | None:intergenic | 35.0% | |
| ACCAGTCTCTTCAACAATTA+TGG | - | chr5_1:50072423-50072442 | None:intergenic | 35.0% | |
| AACCAGTGGAGTTAAAAACA+TGG | + | chr5_1:50072499-50072518 | Msa0735080:CDS | 35.0% | |
| !! | ATCCATGTTTTTAACTCCAC+TGG | - | chr5_1:50072504-50072523 | None:intergenic | 35.0% |
| TGATTTCTCATTTCAGCTCT+TGG | - | chr5_1:50072584-50072603 | None:intergenic | 35.0% | |
| TTGAGTAGCATCTACAAACT+CGG | - | chr5_1:50072693-50072712 | None:intergenic | 35.0% | |
| !!! | AGGGTTTTTTGTGAATCAGA+CGG | - | chr5_1:50071417-50071436 | None:intergenic | 35.0% |
| ! | AATTGGGTTCGATTTTGCTA+GGG | - | chr5_1:50071436-50071455 | None:intergenic | 35.0% |
| ! | AAATTGGGTTCGATTTTGCT+AGG | - | chr5_1:50071437-50071456 | None:intergenic | 35.0% |
| !!! | TTGTTTTGAGTTCCAGTTCT+AGG | - | chr5_1:50071468-50071487 | None:intergenic | 35.0% |
| !!! | GATTGGGTTGTTTTGTTTGT+TGG | - | chr5_1:50071549-50071568 | None:intergenic | 35.0% |
| AGATGAATATGAAGCAGGTA+TGG | + | chr5_1:50071692-50071711 | Msa0735080:intron | 35.0% | |
| CAAATTCAATCTTCATGCCA+GGG | + | chr5_1:50071722-50071741 | Msa0735080:intron | 35.0% | |
| TGGAAGAATTTAGGTAAGTG+GGG | + | chr5_1:50071810-50071829 | Msa0735080:intron | 35.0% | |
| ATGGTCTTTCACAGGAATAT+TGG | + | chr5_1:50072015-50072034 | Msa0735080:intron | 35.0% | |
| ! | TGTTCTGTCTATCATTGGTT+TGG | - | chr5_1:50072108-50072127 | None:intergenic | 35.0% |
| CCAAATGTTCTGTCTATCAT+TGG | - | chr5_1:50072113-50072132 | None:intergenic | 35.0% | |
| CCAATGATAGACAGAACATT+TGG | + | chr5_1:50072110-50072129 | Msa0735080:intron | 35.0% | |
| GGAATTAAGATACAGTGTTC+TGG | + | chr5_1:50072172-50072191 | Msa0735080:intron | 35.0% | |
| ATTAAGATACAGTGTTCTGG+TGG | + | chr5_1:50072175-50072194 | Msa0735080:intron | 35.0% | |
| AAAGGGATATGCTTTCTTTG+TGG | + | chr5_1:50072202-50072221 | Msa0735080:intron | 35.0% | |
| TTGCAATGAACACAATAGTC+AGG | - | chr5_1:50072248-50072267 | None:intergenic | 35.0% | |
| ! | CAAGAAAATAGGGCATTATG+TGG | + | chr5_1:50072265-50072284 | Msa0735080:intron | 35.0% |
| GTTCATGTTGAAGTTAGAGA+TGG | + | chr5_1:50072365-50072384 | Msa0735080:CDS | 35.0% | |
| TAGAGATGGAAGAAAAAAGC+AGG | + | chr5_1:50072379-50072398 | Msa0735080:CDS | 35.0% | |
| AGAGATGGAAGAAAAAAGCA+GGG | + | chr5_1:50072380-50072399 | Msa0735080:CDS | 35.0% | |
| CCAGTCTCTTCAACAATTAT+GGG | - | chr5_1:50072422-50072441 | None:intergenic | 35.0% | |
| ACCAGTCTCTTCAACAATTA+TGG | - | chr5_1:50072423-50072442 | None:intergenic | 35.0% | |
| AACCAGTGGAGTTAAAAACA+TGG | + | chr5_1:50072499-50072518 | Msa0735080:CDS | 35.0% | |
| !! | ATCCATGTTTTTAACTCCAC+TGG | - | chr5_1:50072504-50072523 | None:intergenic | 35.0% |
| TGATTTCTCATTTCAGCTCT+TGG | - | chr5_1:50072584-50072603 | None:intergenic | 35.0% | |
| TTGAGTAGCATCTACAAACT+CGG | - | chr5_1:50072693-50072712 | None:intergenic | 35.0% | |
| TGACAACTCACCTTATTCCT+TGG | + | chr5_1:50071367-50071386 | Msa0735080:CDS | 40.0% | |
| CTAGGCATTTCCAAGGAATA+AGG | - | chr5_1:50071380-50071399 | None:intergenic | 40.0% | |
| TATTCCTTGGAAATGCCTAG+TGG | + | chr5_1:50071380-50071399 | Msa0735080:CDS | 40.0% | |
| !!! | GTTTTTTGTGAATCAGACGG+TGG | - | chr5_1:50071414-50071433 | None:intergenic | 40.0% |
| TCAATCCAAAACTTTCGCTC+AGG | + | chr5_1:50071578-50071597 | Msa0735080:CDS | 40.0% | |
| GTGAAGAGGGAATATCACAA+AGG | - | chr5_1:50071620-50071639 | None:intergenic | 40.0% | |
| TTACCTCAGCCAGTTATCAA+AGG | + | chr5_1:50071642-50071661 | Msa0735080:CDS | 40.0% | |
| CCTGCTTCATATTCATCTTC+TGG | - | chr5_1:50071690-50071709 | None:intergenic | 40.0% | |
| CCAGAAGATGAATATGAAGC+AGG | + | chr5_1:50071687-50071706 | Msa0735080:CDS | 40.0% | |
| GCAAATTCAATCTTCATGCC+AGG | + | chr5_1:50071721-50071740 | Msa0735080:intron | 40.0% | |
| TAGAGCAAAGACAGTAAGAG+GGG | - | chr5_1:50071769-50071788 | None:intergenic | 40.0% | |
| GTAGAGCAAAGACAGTAAGA+GGG | - | chr5_1:50071770-50071789 | None:intergenic | 40.0% | |
| GGAAGAATTTAGGTAAGTGG+GGG | + | chr5_1:50071811-50071830 | Msa0735080:intron | 40.0% | |
| GAAGAATTTAGGTAAGTGGG+GGG | + | chr5_1:50071812-50071831 | Msa0735080:intron | 40.0% | |
| ! | TCTTTTCACATCCTCCAAAC+TGG | - | chr5_1:50071877-50071896 | None:intergenic | 40.0% |
| TGGAGGATGTGAAAAGAGTT+AGG | + | chr5_1:50071880-50071899 | Msa0735080:intron | 40.0% | |
| GAGTTAGGTCTATTCCATCT+TGG | + | chr5_1:50071895-50071914 | Msa0735080:intron | 40.0% | |
| !! | AGCAAAAAGCTTTAGGACAC+CGG | - | chr5_1:50071931-50071950 | None:intergenic | 40.0% |
| ! | GTGTCCTAAAGCTTTTTGCT+TGG | + | chr5_1:50071931-50071950 | Msa0735080:intron | 40.0% |
| GAGACCAAGCAAAAAGCTTT+AGG | - | chr5_1:50071938-50071957 | None:intergenic | 40.0% | |
| ATACTTCCACTGCTCAAGTA+TGG | + | chr5_1:50071982-50072001 | Msa0735080:intron | 40.0% | |
| TACTTCCACTGCTCAAGTAT+GGG | + | chr5_1:50071983-50072002 | Msa0735080:intron | 40.0% | |
| !! | CAAGTATGGGTTAGGTTACA+TGG | + | chr5_1:50071996-50072015 | Msa0735080:intron | 40.0% |
| TAGGTTACATGGTCTTTCAC+AGG | + | chr5_1:50072007-50072026 | Msa0735080:intron | 40.0% | |
| GTCTTTCACAGGAATATTGG+AGG | + | chr5_1:50072018-50072037 | Msa0735080:intron | 40.0% | |
| GAAGCTGAATCTGTGCAAAT+TGG | - | chr5_1:50072083-50072102 | None:intergenic | 40.0% | |
| !! | AACATTTGGCCAGTTTGCTA+GGG | + | chr5_1:50072124-50072143 | Msa0735080:intron | 40.0% |
| AGTGTTCTGGTGGAAAGAAA+GGG | + | chr5_1:50072185-50072204 | Msa0735080:intron | 40.0% | |
| GGCATTATGTGGAAATCTGT+AGG | + | chr5_1:50072276-50072295 | Msa0735080:intron | 40.0% | |
| CCCATAATTGTTGAAGAGAC+TGG | + | chr5_1:50072419-50072438 | Msa0735080:CDS | 40.0% | |
| ATTTCAGCTCTTGGACTGAT+TGG | - | chr5_1:50072575-50072594 | None:intergenic | 40.0% | |
| TGACAACTCACCTTATTCCT+TGG | + | chr5_1:50071367-50071386 | Msa0735080:CDS | 40.0% | |
| CTAGGCATTTCCAAGGAATA+AGG | - | chr5_1:50071380-50071399 | None:intergenic | 40.0% | |
| TATTCCTTGGAAATGCCTAG+TGG | + | chr5_1:50071380-50071399 | Msa0735080:CDS | 40.0% | |
| !!! | GTTTTTTGTGAATCAGACGG+TGG | - | chr5_1:50071414-50071433 | None:intergenic | 40.0% |
| TCAATCCAAAACTTTCGCTC+AGG | + | chr5_1:50071578-50071597 | Msa0735080:CDS | 40.0% | |
| GTGAAGAGGGAATATCACAA+AGG | - | chr5_1:50071620-50071639 | None:intergenic | 40.0% | |
| TTACCTCAGCCAGTTATCAA+AGG | + | chr5_1:50071642-50071661 | Msa0735080:CDS | 40.0% | |
| CCTGCTTCATATTCATCTTC+TGG | - | chr5_1:50071690-50071709 | None:intergenic | 40.0% | |
| CCAGAAGATGAATATGAAGC+AGG | + | chr5_1:50071687-50071706 | Msa0735080:CDS | 40.0% | |
| GCAAATTCAATCTTCATGCC+AGG | + | chr5_1:50071721-50071740 | Msa0735080:intron | 40.0% | |
| TAGAGCAAAGACAGTAAGAG+GGG | - | chr5_1:50071769-50071788 | None:intergenic | 40.0% | |
| GTAGAGCAAAGACAGTAAGA+GGG | - | chr5_1:50071770-50071789 | None:intergenic | 40.0% | |
| GGAAGAATTTAGGTAAGTGG+GGG | + | chr5_1:50071811-50071830 | Msa0735080:intron | 40.0% | |
| GAAGAATTTAGGTAAGTGGG+GGG | + | chr5_1:50071812-50071831 | Msa0735080:intron | 40.0% | |
| ! | TCTTTTCACATCCTCCAAAC+TGG | - | chr5_1:50071877-50071896 | None:intergenic | 40.0% |
| TGGAGGATGTGAAAAGAGTT+AGG | + | chr5_1:50071880-50071899 | Msa0735080:intron | 40.0% | |
| GAGTTAGGTCTATTCCATCT+TGG | + | chr5_1:50071895-50071914 | Msa0735080:intron | 40.0% | |
| !! | AGCAAAAAGCTTTAGGACAC+CGG | - | chr5_1:50071931-50071950 | None:intergenic | 40.0% |
| ! | GTGTCCTAAAGCTTTTTGCT+TGG | + | chr5_1:50071931-50071950 | Msa0735080:intron | 40.0% |
| GAGACCAAGCAAAAAGCTTT+AGG | - | chr5_1:50071938-50071957 | None:intergenic | 40.0% | |
| ATACTTCCACTGCTCAAGTA+TGG | + | chr5_1:50071982-50072001 | Msa0735080:intron | 40.0% | |
| TACTTCCACTGCTCAAGTAT+GGG | + | chr5_1:50071983-50072002 | Msa0735080:intron | 40.0% | |
| !! | CAAGTATGGGTTAGGTTACA+TGG | + | chr5_1:50071996-50072015 | Msa0735080:intron | 40.0% |
| TAGGTTACATGGTCTTTCAC+AGG | + | chr5_1:50072007-50072026 | Msa0735080:intron | 40.0% | |
| GTCTTTCACAGGAATATTGG+AGG | + | chr5_1:50072018-50072037 | Msa0735080:intron | 40.0% | |
| GAAGCTGAATCTGTGCAAAT+TGG | - | chr5_1:50072083-50072102 | None:intergenic | 40.0% | |
| !! | AACATTTGGCCAGTTTGCTA+GGG | + | chr5_1:50072124-50072143 | Msa0735080:intron | 40.0% |
| AGTGTTCTGGTGGAAAGAAA+GGG | + | chr5_1:50072185-50072204 | Msa0735080:intron | 40.0% | |
| GGCATTATGTGGAAATCTGT+AGG | + | chr5_1:50072276-50072295 | Msa0735080:intron | 40.0% | |
| CCCATAATTGTTGAAGAGAC+TGG | + | chr5_1:50072419-50072438 | Msa0735080:CDS | 40.0% | |
| ATTTCAGCTCTTGGACTGAT+TGG | - | chr5_1:50072575-50072594 | None:intergenic | 40.0% | |
| ACGCCTTGAGATTACAGGTT+CGG | - | chr5_1:50071496-50071515 | None:intergenic | 45.0% | |
| ! | TCTCCTTTGATAACTGGCTG+AGG | - | chr5_1:50071648-50071667 | None:intergenic | 45.0% |
| ATCTTCATGCCAGGGTCATA+TGG | + | chr5_1:50071730-50071749 | Msa0735080:intron | 45.0% | |
| CGTAGAGCAAAGACAGTAAG+AGG | - | chr5_1:50071771-50071790 | None:intergenic | 45.0% | |
| ! | GGGGTCTCATCTTTAGGAAA+GGG | + | chr5_1:50071831-50071850 | Msa0735080:intron | 45.0% |
| ! | GGGTCTCATCTTTAGGAAAG+GGG | + | chr5_1:50071832-50071851 | Msa0735080:intron | 45.0% |
| CCATCTTGGAATCTTAACCC+CGG | + | chr5_1:50071909-50071928 | Msa0735080:intron | 45.0% | |
| !! | CAAAAAGCTTTAGGACACCG+GGG | - | chr5_1:50071929-50071948 | None:intergenic | 45.0% |
| !! | GCAAAAAGCTTTAGGACACC+GGG | - | chr5_1:50071930-50071949 | None:intergenic | 45.0% |
| ! | GAACATTTGGCCAGTTTGCT+AGG | + | chr5_1:50072123-50072142 | Msa0735080:intron | 45.0% |
| GGTTGACATGGATGTTACCA+AGG | + | chr5_1:50072151-50072170 | Msa0735080:intron | 45.0% | |
| CAGTGTTCTGGTGGAAAGAA+AGG | + | chr5_1:50072184-50072203 | Msa0735080:intron | 45.0% | |
| ACAAATGTGCAGGTCAATGC+AGG | + | chr5_1:50072311-50072330 | Msa0735080:intron | 45.0% | |
| AGAACAAGACTCAAGCTCTC+AGG | + | chr5_1:50072664-50072683 | Msa0735080:CDS | 45.0% | |
| GAACAAGACTCAAGCTCTCA+GGG | + | chr5_1:50072665-50072684 | Msa0735080:CDS | 45.0% | |
| ACGCCTTGAGATTACAGGTT+CGG | - | chr5_1:50071496-50071515 | None:intergenic | 45.0% | |
| ! | TCTCCTTTGATAACTGGCTG+AGG | - | chr5_1:50071648-50071667 | None:intergenic | 45.0% |
| ATCTTCATGCCAGGGTCATA+TGG | + | chr5_1:50071730-50071749 | Msa0735080:intron | 45.0% | |
| CGTAGAGCAAAGACAGTAAG+AGG | - | chr5_1:50071771-50071790 | None:intergenic | 45.0% | |
| ! | GGGGTCTCATCTTTAGGAAA+GGG | + | chr5_1:50071831-50071850 | Msa0735080:intron | 45.0% |
| ! | GGGTCTCATCTTTAGGAAAG+GGG | + | chr5_1:50071832-50071851 | Msa0735080:intron | 45.0% |
| CCATCTTGGAATCTTAACCC+CGG | + | chr5_1:50071909-50071928 | Msa0735080:intron | 45.0% | |
| !! | CAAAAAGCTTTAGGACACCG+GGG | - | chr5_1:50071929-50071948 | None:intergenic | 45.0% |
| !! | GCAAAAAGCTTTAGGACACC+GGG | - | chr5_1:50071930-50071949 | None:intergenic | 45.0% |
| ! | GAACATTTGGCCAGTTTGCT+AGG | + | chr5_1:50072123-50072142 | Msa0735080:intron | 45.0% |
| GGTTGACATGGATGTTACCA+AGG | + | chr5_1:50072151-50072170 | Msa0735080:intron | 45.0% | |
| CAGTGTTCTGGTGGAAAGAA+AGG | + | chr5_1:50072184-50072203 | Msa0735080:intron | 45.0% | |
| ACAAATGTGCAGGTCAATGC+AGG | + | chr5_1:50072311-50072330 | Msa0735080:intron | 45.0% | |
| AGAACAAGACTCAAGCTCTC+AGG | + | chr5_1:50072664-50072683 | Msa0735080:CDS | 45.0% | |
| GAACAAGACTCAAGCTCTCA+GGG | + | chr5_1:50072665-50072684 | Msa0735080:CDS | 45.0% | |
| GCACCGAACCTGTAATCTCA+AGG | + | chr5_1:50071490-50071509 | Msa0735080:CDS | 50.0% | |
| GAGCTACGCCTTGAGATTAC+AGG | - | chr5_1:50071501-50071520 | None:intergenic | 50.0% | |
| ! | CAGTGCCTGAGCGAAAGTTT+TGG | - | chr5_1:50071586-50071605 | None:intergenic | 50.0% |
| GGCTGAGGTAACTGTGAAGA+GGG | - | chr5_1:50071633-50071652 | None:intergenic | 50.0% | |
| TGGCTGAGGTAACTGTGAAG+AGG | - | chr5_1:50071634-50071653 | None:intergenic | 50.0% | |
| ! | ACCTTTTGGCCATATGACCC+TGG | - | chr5_1:50071742-50071761 | None:intergenic | 50.0% |
| ! | GTAAGAGGGGTTGCACCTTT+TGG | - | chr5_1:50071756-50071775 | None:intergenic | 50.0% |
| AAGTGGGGGGTCTCATCTTT+AGG | + | chr5_1:50071825-50071844 | Msa0735080:intron | 50.0% | |
| ! | GGGGGTCTCATCTTTAGGAA+AGG | + | chr5_1:50071830-50071849 | Msa0735080:intron | 50.0% |
| CCGGGGTTAAGATTCCAAGA+TGG | - | chr5_1:50071912-50071931 | None:intergenic | 50.0% | |
| CCTAACCCATACTTGAGCAG+TGG | - | chr5_1:50071991-50072010 | None:intergenic | 50.0% | |
| CCACTGCTCAAGTATGGGTT+AGG | + | chr5_1:50071988-50072007 | Msa0735080:intron | 50.0% | |
| CACAGGAATATTGGAGGCCA+AGG | + | chr5_1:50072024-50072043 | Msa0735080:intron | 50.0% | |
| CAACCAACACCCTAGCAAAC+TGG | - | chr5_1:50072136-50072155 | None:intergenic | 50.0% | |
| !! | TGCTAGGGTGTTGGTTGACA+TGG | + | chr5_1:50072139-50072158 | Msa0735080:intron | 50.0% |
| AAGAGTCCTGCAGCTGAAGT+TGG | + | chr5_1:50072476-50072495 | Msa0735080:CDS | 50.0% | |
| GCACCGAACCTGTAATCTCA+AGG | + | chr5_1:50071490-50071509 | Msa0735080:CDS | 50.0% | |
| GAGCTACGCCTTGAGATTAC+AGG | - | chr5_1:50071501-50071520 | None:intergenic | 50.0% | |
| ! | CAGTGCCTGAGCGAAAGTTT+TGG | - | chr5_1:50071586-50071605 | None:intergenic | 50.0% |
| GGCTGAGGTAACTGTGAAGA+GGG | - | chr5_1:50071633-50071652 | None:intergenic | 50.0% | |
| TGGCTGAGGTAACTGTGAAG+AGG | - | chr5_1:50071634-50071653 | None:intergenic | 50.0% | |
| ! | ACCTTTTGGCCATATGACCC+TGG | - | chr5_1:50071742-50071761 | None:intergenic | 50.0% |
| ! | GTAAGAGGGGTTGCACCTTT+TGG | - | chr5_1:50071756-50071775 | None:intergenic | 50.0% |
| AAGTGGGGGGTCTCATCTTT+AGG | + | chr5_1:50071825-50071844 | Msa0735080:intron | 50.0% | |
| ! | GGGGGTCTCATCTTTAGGAA+AGG | + | chr5_1:50071830-50071849 | Msa0735080:intron | 50.0% |
| CCGGGGTTAAGATTCCAAGA+TGG | - | chr5_1:50071912-50071931 | None:intergenic | 50.0% | |
| CCTAACCCATACTTGAGCAG+TGG | - | chr5_1:50071991-50072010 | None:intergenic | 50.0% | |
| CCACTGCTCAAGTATGGGTT+AGG | + | chr5_1:50071988-50072007 | Msa0735080:intron | 50.0% | |
| CACAGGAATATTGGAGGCCA+AGG | + | chr5_1:50072024-50072043 | Msa0735080:intron | 50.0% | |
| CAACCAACACCCTAGCAAAC+TGG | - | chr5_1:50072136-50072155 | None:intergenic | 50.0% | |
| !! | TGCTAGGGTGTTGGTTGACA+TGG | + | chr5_1:50072139-50072158 | Msa0735080:intron | 50.0% |
| AAGAGTCCTGCAGCTGAAGT+TGG | + | chr5_1:50072476-50072495 | Msa0735080:CDS | 50.0% | |
| GCGTCCACTAGGCATTTCCA+AGG | - | chr5_1:50071387-50071406 | None:intergenic | 55.0% | |
| GCCAGGGTCATATGGCCAAA+AGG | + | chr5_1:50071738-50071757 | Msa0735080:intron | 55.0% | |
| !! | TGGCCAGTTTGCTAGGGTGT+TGG | + | chr5_1:50072130-50072149 | Msa0735080:intron | 55.0% |
| CTGGTTCCAACTTCAGCTGC+AGG | - | chr5_1:50072485-50072504 | None:intergenic | 55.0% | |
| GCAGCTGAAGTTGGAACCAG+TGG | + | chr5_1:50072485-50072504 | Msa0735080:CDS | 55.0% | |
| GCGTCCACTAGGCATTTCCA+AGG | - | chr5_1:50071387-50071406 | None:intergenic | 55.0% | |
| GCCAGGGTCATATGGCCAAA+AGG | + | chr5_1:50071738-50071757 | Msa0735080:intron | 55.0% | |
| !! | TGGCCAGTTTGCTAGGGTGT+TGG | + | chr5_1:50072130-50072149 | Msa0735080:intron | 55.0% |
| CTGGTTCCAACTTCAGCTGC+AGG | - | chr5_1:50072485-50072504 | None:intergenic | 55.0% | |
| GCAGCTGAAGTTGGAACCAG+TGG | + | chr5_1:50072485-50072504 | Msa0735080:CDS | 55.0% | |
| ACGGTGGATCTGCGTCCACT+AGG | - | chr5_1:50071398-50071417 | None:intergenic | 60.0% | |
| ACGGTGGATCTGCGTCCACT+AGG | - | chr5_1:50071398-50071417 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 50071366 | 50072733 | 50071366 | ID=Msa0735080;Name=Msa0735080 |
| chr5_1 | mRNA | 50071366 | 50072733 | 50071366 | ID=Msa0735080-mRNA-1;Parent=Msa0735080;Name=Msa0735080-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|0|0|1|1|1|2|0|241 |
| chr5_1 | exon | 50071366 | 50071708 | 50071366 | ID=Msa0735080-mRNA-1:exon:14119;Parent=Msa0735080-mRNA-1 |
| chr5_1 | exon | 50072354 | 50072733 | 50072354 | ID=Msa0735080-mRNA-1:exon:14120;Parent=Msa0735080-mRNA-1 |
| chr5_1 | CDS | 50071366 | 50071708 | 50071366 | ID=Msa0735080-mRNA-1:cds;Parent=Msa0735080-mRNA-1 |
| chr5_1 | CDS | 50072354 | 50072733 | 50072354 | ID=Msa0735080-mRNA-1:cds;Parent=Msa0735080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
