Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024320 | XP_013460423.1 | 45.697 | 488 | 216 | 13 | 1 | 453 | 1 | 474 | 8.60e-120 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024320 | sp|Q9SD53|Y3720_ARATH | 24.053 | 449 | 266 | 19 | 35 | 449 | 51 | 458 | 1.08e-13 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024320 | A0A072UYF4 | 45.697 | 488 | 216 | 13 | 1 | 453 | 1 | 474 | 4.11e-120 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090380 | Msa1024320 | 0.805148 | 1.534973e-49 | -8.615850e-47 |
| Msa0658190 | Msa1024320 | 0.803819 | 2.906345e-49 | -8.615850e-47 |
| Msa0662460 | Msa1024320 | 0.837181 | 6.049449e-57 | -8.615850e-47 |
| Msa0671860 | Msa1024320 | 0.801206 | 1.004279e-48 | -8.615850e-47 |
| Msa0712880 | Msa1024320 | 0.806872 | 6.660339e-50 | -8.615850e-47 |
| Msa0137860 | Msa1024320 | 0.803893 | 2.805030e-49 | -8.615850e-47 |
| Msa1024320 | Msa1069890 | 0.802786 | 4.756073e-49 | -8.615850e-47 |
| Msa1024320 | Msa1114670 | 0.810744 | 9.898688e-51 | -8.615850e-47 |
| Msa1024320 | Msa1136760 | 0.821754 | 3.412628e-53 | -8.615850e-47 |
| Msa1024320 | Msa1398140 | 0.816609 | 5.062616e-52 | -8.615850e-47 |
| Msa1024320 | Msa1433410 | 0.802204 | 6.267920e-49 | -8.615850e-47 |
| Msa1024320 | Msa1447880 | 0.814824 | 1.265397e-51 | -8.615850e-47 |
| Msa1024320 | Msa1455200 | 0.801899 | 7.243123e-49 | -8.615850e-47 |
| Msa0296910 | Msa1024320 | 0.811581 | 6.517910e-51 | -8.615850e-47 |
| Msa0335070 | Msa1024320 | 0.808320 | 3.281054e-50 | -8.615850e-47 |
| Msa0536540 | Msa1024320 | 0.819642 | 1.043469e-52 | -8.615850e-47 |
| Msa0592660 | Msa1024320 | 0.845100 | 5.011924e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024320 | MtrunA17_Chr3g0107251 | 45.697 | 488 | 216 | 13 | 1 | 453 | 1 | 474 | 7.91e-124 | 368 |
| Msa1024320 | MtrunA17_Chr3g0091831 | 46.074 | 484 | 212 | 13 | 1 | 452 | 14 | 480 | 1.74e-122 | 365 |
| Msa1024320 | MtrunA17_Chr7g0242181 | 33.459 | 532 | 254 | 19 | 11 | 453 | 17 | 537 | 5.50e-75 | 244 |
| Msa1024320 | MtrunA17_Chr7g0242011 | 32.824 | 524 | 255 | 21 | 10 | 453 | 43 | 549 | 4.56e-69 | 229 |
| Msa1024320 | MtrunA17_Chr7g0242091 | 32.000 | 550 | 258 | 15 | 5 | 453 | 29 | 563 | 4.21e-65 | 219 |
| Msa1024320 | MtrunA17_Chr7g0242051 | 32.554 | 513 | 239 | 21 | 17 | 439 | 16 | 511 | 1.59e-62 | 211 |
| Msa1024320 | MtrunA17_Chr7g0242071 | 30.331 | 544 | 264 | 15 | 11 | 453 | 10 | 539 | 3.95e-61 | 207 |
| Msa1024320 | MtrunA17_Chr7g0241791 | 29.532 | 491 | 247 | 16 | 28 | 453 | 20 | 476 | 1.55e-52 | 183 |
| Msa1024320 | MtrunA17_Chr7g0241951 | 27.993 | 543 | 277 | 17 | 5 | 453 | 2 | 524 | 1.68e-49 | 176 |
| Msa1024320 | MtrunA17_Chr1g0170351 | 28.317 | 505 | 245 | 17 | 18 | 449 | 15 | 475 | 1.88e-43 | 159 |
| Msa1024320 | MtrunA17_Chr7g0242101 | 30.711 | 394 | 192 | 16 | 122 | 453 | 223 | 597 | 1.59e-34 | 135 |
| Msa1024320 | MtrunA17_Chr7g0242101 | 40.000 | 150 | 67 | 5 | 9 | 137 | 3 | 150 | 5.02e-20 | 92.8 |
| Msa1024320 | MtrunA17_Chr7g0242151 | 40.782 | 179 | 86 | 4 | 11 | 171 | 10 | 186 | 1.21e-31 | 127 |
| Msa1024320 | MtrunA17_Chr7g0242151 | 36.979 | 192 | 103 | 6 | 271 | 449 | 355 | 541 | 2.49e-23 | 102 |
| Msa1024320 | MtrunA17_Chr7g0241971 | 36.410 | 195 | 99 | 7 | 277 | 453 | 178 | 365 | 3.42e-28 | 114 |
| Msa1024320 | MtrunA17_Chr7g0241971 | 36.765 | 136 | 65 | 3 | 17 | 131 | 3 | 138 | 8.58e-18 | 84.7 |
| Msa1024320 | MtrunA17_Chr4g0006091 | 28.180 | 401 | 191 | 15 | 81 | 445 | 25 | 364 | 2.22e-25 | 107 |
| Msa1024320 | MtrunA17_Chr4g0006121 | 30.508 | 236 | 110 | 8 | 248 | 445 | 86 | 305 | 9.36e-19 | 86.7 |
| Msa1024320 | MtrunA17_Chr7g0265891 | 25.263 | 380 | 232 | 13 | 35 | 391 | 56 | 406 | 7.45e-18 | 85.5 |
| Msa1024320 | MtrunA17_Chr6g0452561 | 24.581 | 358 | 221 | 12 | 35 | 374 | 30 | 356 | 3.46e-16 | 80.5 |
| Msa1024320 | MtrunA17_Chr6g0452551 | 24.069 | 349 | 223 | 12 | 35 | 374 | 30 | 345 | 5.21e-16 | 79.7 |
| Msa1024320 | MtrunA17_Chr6g0452601 | 24.309 | 362 | 216 | 13 | 35 | 374 | 30 | 355 | 6.85e-16 | 79.3 |
| Msa1024320 | MtrunA17_Chr6g0452591 | 25.140 | 358 | 210 | 12 | 35 | 374 | 60 | 377 | 7.29e-15 | 76.3 |
| Msa1024320 | MtrunA17_Chr6g0452501 | 25.501 | 349 | 230 | 13 | 35 | 379 | 30 | 352 | 2.58e-14 | 74.7 |
| Msa1024320 | MtrunA17_Chr6g0452611 | 23.810 | 357 | 225 | 15 | 35 | 379 | 29 | 350 | 5.15e-14 | 73.6 |
| Msa1024320 | MtrunA17_Chr7g0242131 | 40.351 | 114 | 48 | 4 | 26 | 119 | 13 | 126 | 1.76e-13 | 67.4 |
| Msa1024320 | MtrunA17_Chr5g0439721 | 24.222 | 450 | 267 | 20 | 30 | 450 | 32 | 436 | 1.79e-13 | 72.0 |
| Msa1024320 | MtrunA17_Chr3g0118601 | 22.989 | 435 | 286 | 17 | 35 | 448 | 45 | 451 | 3.71e-13 | 71.2 |
| Msa1024320 | MtrunA17_Chr6g0452531 | 22.254 | 355 | 224 | 12 | 35 | 374 | 30 | 347 | 3.97e-13 | 70.9 |
| Msa1024320 | MtrunA17_Chr3g0138001 | 24.331 | 411 | 244 | 16 | 35 | 427 | 31 | 392 | 1.38e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024320 | AT4G31980.1 | 25.698 | 358 | 214 | 13 | 35 | 377 | 298 | 618 | 2.32e-19 | 91.3 |
| Msa1024320 | AT3G47250.3 | 24.449 | 454 | 262 | 16 | 35 | 450 | 66 | 476 | 1.11e-18 | 88.6 |
| Msa1024320 | AT3G47250.2 | 24.449 | 454 | 262 | 16 | 35 | 450 | 66 | 476 | 1.11e-18 | 88.6 |
| Msa1024320 | AT3G47250.1 | 24.449 | 454 | 262 | 16 | 35 | 450 | 66 | 476 | 1.11e-18 | 88.6 |
| Msa1024320 | AT5G11290.2 | 25.424 | 354 | 211 | 12 | 36 | 372 | 39 | 356 | 9.24e-18 | 85.5 |
| Msa1024320 | AT2G36430.1 | 23.445 | 418 | 255 | 15 | 8 | 398 | 26 | 405 | 2.37e-17 | 84.3 |
| Msa1024320 | AT3G50150.1 | 24.053 | 449 | 274 | 19 | 35 | 452 | 95 | 507 | 1.30e-16 | 82.4 |
| Msa1024320 | AT3G47210.1 | 26.098 | 387 | 237 | 15 | 35 | 401 | 98 | 455 | 1.85e-15 | 79.0 |
| Msa1024320 | AT3G47200.1 | 24.053 | 449 | 266 | 19 | 35 | 449 | 51 | 458 | 1.10e-14 | 76.6 |
| Msa1024320 | AT3G47200.2 | 24.053 | 449 | 266 | 19 | 35 | 449 | 51 | 458 | 1.10e-14 | 76.6 |
Find 91 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGATTGAGTTGATCAATT+TGG | 0.175142 | 7_1:-53472635 | None:intergenic |
| ATAGAGAGCACATTGTATTT+AGG | 0.180396 | 7_1:+53474350 | Msa1024320:three_prime_UTR |
| GAGATTGAGTTGATCAATTT+GGG | 0.233510 | 7_1:-53472634 | None:intergenic |
| TATTGTTCGTGCAAGCTATA+TGG | 0.294745 | 7_1:+53472278 | Msa1024320:CDS |
| CGAGTTATACGTAACGATTT+AGG | 0.304073 | 7_1:+53473143 | Msa1024320:CDS |
| GTCTCTGTAATAACCAATTC+TGG | 0.310249 | 7_1:-53472945 | None:intergenic |
| TAGAGAGCACATTGTATTTA+GGG | 0.316735 | 7_1:+53474351 | Msa1024320:three_prime_UTR |
| GGTTTCTAATATAGCATAAT+AGG | 0.328705 | 7_1:-53473282 | None:intergenic |
| GACACTACTTGTTCCAGAAT+TGG | 0.334562 | 7_1:+53472932 | Msa1024320:CDS |
| GCGACTAGGCTTTACGCATC+TGG | 0.348043 | 7_1:+53472813 | Msa1024320:CDS |
| TCAAATCGTGGAGAATAATA+AGG | 0.360628 | 7_1:+53472719 | Msa1024320:CDS |
| CAGAGACAATGGAATCAAAA+TGG | 0.374706 | 7_1:+53472961 | Msa1024320:CDS |
| TGTCTATAATGATTTGCTTA+TGG | 0.375743 | 7_1:+53472461 | Msa1024320:CDS |
| TGCTACGTTGATAACTCTTC+TGG | 0.376103 | 7_1:+53473391 | Msa1024320:CDS |
| ACACAATACAATGTGCTTGA+TGG | 0.383156 | 7_1:-53474431 | None:intergenic |
| CACTAACCACTTTATAAAAC+CGG | 0.388805 | 7_1:-53474287 | None:intergenic |
| GTACCGATGGAGACAACTTT+TGG | 0.394590 | 7_1:-53472120 | None:intergenic |
| CTCCATCGGTACTCGATACA+TGG | 0.396057 | 7_1:+53472131 | Msa1024320:CDS |
| AATGGCGGAATTTCATTGCT+TGG | 0.400692 | 7_1:+53472979 | Msa1024320:CDS |
| TTTGATTTAAAATTCATCAA+TGG | 0.403772 | 7_1:+53472909 | Msa1024320:CDS |
| CTAAAATCCTGCTGAAATAG+TGG | 0.404718 | 7_1:-53473319 | None:intergenic |
| CTTGGGAGCATCACAAGAAA+TGG | 0.406524 | 7_1:+53472997 | Msa1024320:CDS |
| TTGATTTAAAATTCATCAAT+GGG | 0.408863 | 7_1:+53472910 | Msa1024320:CDS |
| ATGTAGATCAATGGTATTGC+CGG | 0.409307 | 7_1:-53472432 | None:intergenic |
| GTATGATCTTGCTACAGTTA+TGG | 0.412094 | 7_1:+53472320 | Msa1024320:CDS |
| CGAAGTTCGTCTGGAACAAC+GGG | 0.418614 | 7_1:-53472072 | None:intergenic |
| CAACTCAATCTCAACTTCAA+TGG | 0.419347 | 7_1:+53472645 | Msa1024320:CDS |
| ATGGCGGAATTTCATTGCTT+GGG | 0.420231 | 7_1:+53472980 | Msa1024320:CDS |
| CGCCATTTGATCTCTTCCAT+TGG | 0.424515 | 7_1:-53472171 | None:intergenic |
| AAATTAGATTGGATGGATAG+TGG | 0.427413 | 7_1:-53474395 | None:intergenic |
| TAGTGATCATCAAGTGTAGC+TGG | 0.435688 | 7_1:+53474305 | Msa1024320:three_prime_UTR |
| TACTTTGCCACTATTTCAGC+AGG | 0.438865 | 7_1:+53473312 | Msa1024320:CDS |
| GAGCTTCTCATTTCTTACTC+AGG | 0.439015 | 7_1:+53472366 | Msa1024320:intron |
| GGAACAACGGGAATGCTATA+TGG | 0.443564 | 7_1:-53472060 | None:intergenic |
| AGGCTTTACGCATCTGGGAT+TGG | 0.445060 | 7_1:+53472819 | Msa1024320:CDS |
| TGTAGAAAGTGTTTATGATC+GGG | 0.446440 | 7_1:+53472536 | Msa1024320:CDS |
| AGTCCGACATTATTTCTGAT+TGG | 0.449239 | 7_1:+53472559 | Msa1024320:CDS |
| TCGAAGTTCGTCTGGAACAA+CGG | 0.466627 | 7_1:-53472073 | None:intergenic |
| AGCTTCTCATTTCTTACTCA+GGG | 0.466660 | 7_1:+53472367 | Msa1024320:CDS |
| GGATGATGAGTATGTGTTCA+AGG | 0.475476 | 7_1:-53473261 | None:intergenic |
| GAAGCAAAATACCATGTCAT+TGG | 0.477313 | 7_1:+53472008 | Msa1024320:CDS |
| GACTTACTTGGGAAAATGAT+AGG | 0.480795 | 7_1:-53473444 | None:intergenic |
| AAAACATTTAGAATGTGAAA+TGG | 0.489252 | 7_1:-53472498 | None:intergenic |
| TGCCAATGGAAGAGATCAAA+TGG | 0.492988 | 7_1:+53472169 | Msa1024320:CDS |
| AAATAGTGGCAAAGTAATGC+AGG | 0.495153 | 7_1:-53473305 | None:intergenic |
| AGGCATGAGTAATCGAGATC+TGG | 0.499675 | 7_1:+53473163 | Msa1024320:CDS |
| ATCAATGGTATTGCCGGAGA+AGG | 0.501823 | 7_1:-53472426 | None:intergenic |
| AAAACAATAAGCACAAAAGA+TGG | 0.501903 | 7_1:+53471986 | Msa1024320:CDS |
| TTGTAGAAAGTGTTTATGAT+CGG | 0.507043 | 7_1:+53472535 | Msa1024320:CDS |
| GGCAATACCATTGATCTACA+TGG | 0.518929 | 7_1:+53472434 | Msa1024320:CDS |
| TGATTCAAAACTACCATCAC+GGG | 0.536163 | 7_1:+53472395 | Msa1024320:CDS |
| ACATGTTCCATGTAGATCAA+TGG | 0.539217 | 7_1:-53472441 | None:intergenic |
| ACGGGACAAGTACCCTTCTC+CGG | 0.541541 | 7_1:+53472413 | Msa1024320:CDS |
| AAAATCTTGAAGAAAAGTAC+CGG | 0.551870 | 7_1:+53474268 | Msa1024320:three_prime_UTR |
| ATTGAAATTGATGTCGGAGG+AGG | 0.558357 | 7_1:+53472759 | Msa1024320:CDS |
| TCAATGGTATTGCCGGAGAA+GGG | 0.560453 | 7_1:-53472425 | None:intergenic |
| GGTCATAGCTATAGAAAGAG+AGG | 0.561468 | 7_1:-53472605 | None:intergenic |
| ATTGGTTATTACAGAGACAA+TGG | 0.561655 | 7_1:+53472950 | Msa1024320:CDS |
| CTATAATGATTTGCTTATGG+TGG | 0.567060 | 7_1:+53472464 | Msa1024320:CDS |
| GGGAAAATGATAGGCGACAA+TGG | 0.569669 | 7_1:-53473435 | None:intergenic |
| ATTTGAATCGATGTGCGACT+AGG | 0.574528 | 7_1:+53472799 | Msa1024320:CDS |
| GAAGGGTACTTGTCCCGTGA+TGG | 0.581613 | 7_1:-53472408 | None:intergenic |
| CAAAATACCATGTCATTGGT+AGG | 0.581628 | 7_1:+53472012 | Msa1024320:CDS |
| TTGATTCAAAACTACCATCA+CGG | 0.582434 | 7_1:+53472394 | Msa1024320:CDS |
| TCCCATGTATCGAGTACCGA+TGG | 0.583531 | 7_1:-53472133 | None:intergenic |
| AAGAAAAGAGCTAATGCCAA+TGG | 0.586368 | 7_1:+53472155 | Msa1024320:CDS |
| GCAGGAACTAATTCTAGCGA+AGG | 0.588568 | 7_1:+53474216 | Msa1024320:intron |
| TTCGAGAATAGCTTCCATGC+AGG | 0.589158 | 7_1:-53472247 | None:intergenic |
| GGAACTAATTCTAGCGAAGG+AGG | 0.598675 | 7_1:+53474219 | Msa1024320:intron |
| GATTAATTGAAAGCCATGGA+AGG | 0.599201 | 7_1:+53471961 | None:intergenic |
| AGAGAGCACATTGTATTTAG+GGG | 0.605769 | 7_1:+53474352 | Msa1024320:three_prime_UTR |
| GCATCGATTGAAATTGATGT+CGG | 0.606536 | 7_1:+53472753 | Msa1024320:CDS |
| GTTGATCAATTTGGGGACGA+AGG | 0.608781 | 7_1:-53472626 | None:intergenic |
| AGTGATCATCAAGTGTAGCT+GGG | 0.609003 | 7_1:+53474306 | Msa1024320:three_prime_UTR |
| AATAGTGGCAAAGTAATGCA+GGG | 0.611145 | 7_1:-53473304 | None:intergenic |
| ACTCATTGTCAATGATGTCA+CGG | 0.612953 | 7_1:-53473220 | None:intergenic |
| ATCACTGAAAAGCAAAGCAG+AGG | 0.615803 | 7_1:-53473078 | None:intergenic |
| TGTTTCCGCTCGTATTGATG+CGG | 0.625755 | 7_1:+53472686 | Msa1024320:CDS |
| TCCATCGGTACTCGATACAT+GGG | 0.630624 | 7_1:+53472132 | Msa1024320:CDS |
| AGATTGAGTTGATCAATTTG+GGG | 0.630889 | 7_1:-53472633 | None:intergenic |
| ATACCAAAAGTTGTCTCCAT+CGG | 0.635175 | 7_1:+53472117 | Msa1024320:CDS |
| GCTTCTCATTTCTTACTCAG+GGG | 0.641980 | 7_1:+53472368 | Msa1024320:CDS |
| GTCATAGCTATAGAAAGAGA+GGG | 0.642936 | 7_1:-53472604 | None:intergenic |
| GAAACAATTTCAAGTAAGTG+AGG | 0.645803 | 7_1:-53472669 | None:intergenic |
| ACTCCAATCAGAAATAATGT+CGG | 0.664346 | 7_1:-53472562 | None:intergenic |
| TCGATTGAAATTGATGTCGG+AGG | 0.667501 | 7_1:+53472756 | Msa1024320:CDS |
| TACAGCACCTACCAATGACA+TGG | 0.678009 | 7_1:-53472019 | None:intergenic |
| ATAGTGGCAAAGTAATGCAG+GGG | 0.698227 | 7_1:-53473303 | None:intergenic |
| AGACAATGGAATCAAAATGG+CGG | 0.698722 | 7_1:+53472964 | Msa1024320:CDS |
| GGAGAATGATGTTCAAATCG+TGG | 0.698946 | 7_1:+53472707 | Msa1024320:CDS |
| ATTCTCCGCATCAATACGAG+CGG | 0.700760 | 7_1:-53472691 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTTTATTAAATTAGAT+TGG | - | chr7_1:53474409-53474428 | None:intergenic | 10.0% |
| !!! | TTTGATTTAAAATTCATCAA+TGG | + | chr7_1:53472909-53472928 | Msa1024320:CDS | 15.0% |
| !!! | TTGATTTAAAATTCATCAAT+GGG | + | chr7_1:53472910-53472929 | Msa1024320:CDS | 15.0% |
| !!! | CTTGTGTATTATTATTTTTT+GGG | + | chr7_1:53474139-53474158 | Msa1024320:intron | 15.0% |
| !!! | TTTTATTAAATTAGATTGGA+TGG | - | chr7_1:53474405-53474424 | None:intergenic | 15.0% |
| !!! | AAAACATTTAGAATGTGAAA+TGG | - | chr7_1:53472501-53472520 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAAGCAAAGTGT+AGG | - | chr7_1:53473469-53473488 | None:intergenic | 20.0% |
| !!! | TAATTCCTACACTAAATTTT+GGG | + | chr7_1:53473495-53473514 | Msa1024320:intron | 20.0% |
| !! | TCATGAATTCAAATTTATTG+TGG | - | chr7_1:53473842-53473861 | None:intergenic | 20.0% |
| !! | TAAATTTGAATTCATGAGTT+CGG | + | chr7_1:53473845-53473864 | Msa1024320:intron | 20.0% |
| !! | CAAAATAAATCTAATCCAAA+CGG | + | chr7_1:53474074-53474093 | Msa1024320:intron | 20.0% |
| !! | AAAATAAATCTAATCCAAAC+GGG | + | chr7_1:53474075-53474094 | Msa1024320:intron | 20.0% |
| !! | CCAAAAAATAATAATACACA+AGG | - | chr7_1:53474141-53474160 | None:intergenic | 20.0% |
| !!! | CCTTGTGTATTATTATTTTT+TGG | + | chr7_1:53474138-53474157 | Msa1024320:intron | 20.0% |
| ! | AAAACAATAAGCACAAAAGA+TGG | + | chr7_1:53471986-53472005 | Msa1024320:CDS | 25.0% |
| !!! | TGTCTATAATGATTTGCTTA+TGG | + | chr7_1:53472461-53472480 | Msa1024320:CDS | 25.0% |
| !!! | TTGTAGAAAGTGTTTATGAT+CGG | + | chr7_1:53472535-53472554 | Msa1024320:CDS | 25.0% |
| ! | TAAAAATACTCTGTGAGAAA+TGG | - | chr7_1:53472848-53472867 | None:intergenic | 25.0% |
| !!! | CAGAGTATTTTTAAGACATT+AGG | + | chr7_1:53472855-53472874 | Msa1024320:intron | 25.0% |
| ! | GGTTTCTAATATAGCATAAT+AGG | - | chr7_1:53473285-53473304 | None:intergenic | 25.0% |
| !!! | ACAACCTTCACAAATTTTTT+AGG | + | chr7_1:53473351-53473370 | Msa1024320:CDS | 25.0% |
| !! | GTAATTCCTACACTAAATTT+TGG | + | chr7_1:53473494-53473513 | Msa1024320:intron | 25.0% |
| !! | TTTTACCCAAAATTTAGTGT+AGG | - | chr7_1:53473503-53473522 | None:intergenic | 25.0% |
| !! | TTTTTGTTCAAGTAGTCTAA+TGG | - | chr7_1:53473551-53473570 | None:intergenic | 25.0% |
| ! | TACCAATACGACAATTAAAA+AGG | - | chr7_1:53473606-53473625 | None:intergenic | 25.0% |
| ! | TAAAATAAGCCTAATCCAAA+CGG | - | chr7_1:53473886-53473905 | None:intergenic | 25.0% |
| ! | AACAATTAAAATACCACACA+AGG | - | chr7_1:53474169-53474188 | None:intergenic | 25.0% |
| !! | TTGTTCGTTAATTTTATGCT+TGG | + | chr7_1:53474184-53474203 | Msa1024320:intron | 25.0% |
| !! | AAAATCTTGAAGAAAAGTAC+CGG | + | chr7_1:53474268-53474287 | Msa1024320:three_prime_UTR | 25.0% |
| TCAAAACTTGACATTTCAAC+TGG | - | chr7_1:53472225-53472244 | None:intergenic | 30.0% | |
| TTGATTCAAAACTACCATCA+CGG | + | chr7_1:53472394-53472413 | Msa1024320:CDS | 30.0% | |
| !! | CTATAATGATTTGCTTATGG+TGG | + | chr7_1:53472464-53472483 | Msa1024320:CDS | 30.0% |
| !! | TGTAGAAAGTGTTTATGATC+GGG | + | chr7_1:53472536-53472555 | Msa1024320:CDS | 30.0% |
| ACTCCAATCAGAAATAATGT+CGG | - | chr7_1:53472565-53472584 | None:intergenic | 30.0% | |
| !! | AGATTGAGTTGATCAATTTG+GGG | - | chr7_1:53472636-53472655 | None:intergenic | 30.0% |
| !! | GAGATTGAGTTGATCAATTT+GGG | - | chr7_1:53472637-53472656 | None:intergenic | 30.0% |
| !! | TGAGATTGAGTTGATCAATT+TGG | - | chr7_1:53472638-53472657 | None:intergenic | 30.0% |
| ! | GAAACAATTTCAAGTAAGTG+AGG | - | chr7_1:53472672-53472691 | None:intergenic | 30.0% |
| TCAAATCGTGGAGAATAATA+AGG | + | chr7_1:53472719-53472738 | Msa1024320:CDS | 30.0% | |
| ATTGGTTATTACAGAGACAA+TGG | + | chr7_1:53472950-53472969 | Msa1024320:CDS | 30.0% | |
| ! | GAAGAGTTCTTCTTCTTTTT+CGG | + | chr7_1:53473022-53473041 | Msa1024320:CDS | 30.0% |
| !! | CTTTTTCATTCAATCGCAAA+AGG | + | chr7_1:53473191-53473210 | Msa1024320:CDS | 30.0% |
| ! | ATTTCAGCAGGATTTTAGAT+TGG | + | chr7_1:53473324-53473343 | Msa1024320:CDS | 30.0% |
| !! | GTCCTTTTTAATTGTCGTAT+TGG | + | chr7_1:53473601-53473620 | Msa1024320:intron | 30.0% |
| ! | AATGACTCACATCATGATTT+TGG | - | chr7_1:53473754-53473773 | None:intergenic | 30.0% |
| AAAATAAGCCTAATCCAAAC+GGG | - | chr7_1:53473885-53473904 | None:intergenic | 30.0% | |
| !!! | AAAGTACCGGTTTTATAAAG+TGG | + | chr7_1:53474281-53474300 | Msa1024320:three_prime_UTR | 30.0% |
| CACTAACCACTTTATAAAAC+CGG | - | chr7_1:53474290-53474309 | None:intergenic | 30.0% | |
| ! | ATAGAGAGCACATTGTATTT+AGG | + | chr7_1:53474350-53474369 | Msa1024320:three_prime_UTR | 30.0% |
| ! | TAGAGAGCACATTGTATTTA+GGG | + | chr7_1:53474351-53474370 | Msa1024320:three_prime_UTR | 30.0% |
| AAATTAGATTGGATGGATAG+TGG | - | chr7_1:53474398-53474417 | None:intergenic | 30.0% | |
| GAAGCAAAATACCATGTCAT+TGG | + | chr7_1:53472008-53472027 | Msa1024320:CDS | 35.0% | |
| CAAAATACCATGTCATTGGT+AGG | + | chr7_1:53472012-53472031 | Msa1024320:CDS | 35.0% | |
| ! | TTCAATTTTCGAAGTTCGTC+TGG | - | chr7_1:53472084-53472103 | None:intergenic | 35.0% |
| ATACCAAAAGTTGTCTCCAT+CGG | + | chr7_1:53472117-53472136 | Msa1024320:CDS | 35.0% | |
| AAGAAAAGAGCTAATGCCAA+TGG | + | chr7_1:53472155-53472174 | Msa1024320:CDS | 35.0% | |
| TATTGTTCGTGCAAGCTATA+TGG | + | chr7_1:53472278-53472297 | Msa1024320:CDS | 35.0% | |
| GTATGATCTTGCTACAGTTA+TGG | + | chr7_1:53472320-53472339 | Msa1024320:CDS | 35.0% | |
| ! | GCTACAGTTATGGTTTTTGA+TGG | + | chr7_1:53472330-53472349 | Msa1024320:CDS | 35.0% |
| AGCTTCTCATTTCTTACTCA+GGG | + | chr7_1:53472367-53472386 | Msa1024320:CDS | 35.0% | |
| TGATTCAAAACTACCATCAC+GGG | + | chr7_1:53472395-53472414 | Msa1024320:CDS | 35.0% | |
| ATGTAGATCAATGGTATTGC+CGG | - | chr7_1:53472435-53472454 | None:intergenic | 35.0% | |
| ACATGTTCCATGTAGATCAA+TGG | - | chr7_1:53472444-53472463 | None:intergenic | 35.0% | |
| !! | AGTCCGACATTATTTCTGAT+TGG | + | chr7_1:53472559-53472578 | Msa1024320:CDS | 35.0% |
| GTCATAGCTATAGAAAGAGA+GGG | - | chr7_1:53472607-53472626 | None:intergenic | 35.0% | |
| CAACTCAATCTCAACTTCAA+TGG | + | chr7_1:53472645-53472664 | Msa1024320:CDS | 35.0% | |
| !! | GCATCGATTGAAATTGATGT+CGG | + | chr7_1:53472753-53472772 | Msa1024320:CDS | 35.0% |
| GTCTCTGTAATAACCAATTC+TGG | - | chr7_1:53472948-53472967 | None:intergenic | 35.0% | |
| CAGAGACAATGGAATCAAAA+TGG | + | chr7_1:53472961-53472980 | Msa1024320:CDS | 35.0% | |
| AGACAATGGAATCAAAATGG+CGG | + | chr7_1:53472964-53472983 | Msa1024320:CDS | 35.0% | |
| CGAGTTATACGTAACGATTT+AGG | + | chr7_1:53473143-53473162 | Msa1024320:CDS | 35.0% | |
| ACTCATTGTCAATGATGTCA+CGG | - | chr7_1:53473223-53473242 | None:intergenic | 35.0% | |
| AATAGTGGCAAAGTAATGCA+GGG | - | chr7_1:53473307-53473326 | None:intergenic | 35.0% | |
| AAATAGTGGCAAAGTAATGC+AGG | - | chr7_1:53473308-53473327 | None:intergenic | 35.0% | |
| CTAAAATCCTGCTGAAATAG+TGG | - | chr7_1:53473322-53473341 | None:intergenic | 35.0% | |
| CACGCCTAAAAAATTTGTGA+AGG | - | chr7_1:53473358-53473377 | None:intergenic | 35.0% | |
| !!! | CTTCACAAATTTTTTAGGCG+TGG | + | chr7_1:53473356-53473375 | Msa1024320:CDS | 35.0% |
| GACTTACTTGGGAAAATGAT+AGG | - | chr7_1:53473447-53473466 | None:intergenic | 35.0% | |
| GGGTAAAAATTTATGCAGAG+CGG | + | chr7_1:53473515-53473534 | Msa1024320:intron | 35.0% | |
| GGTAAAAATTTATGCAGAGC+GGG | + | chr7_1:53473516-53473535 | Msa1024320:intron | 35.0% | |
| GTAAAAATTTATGCAGAGCG+GGG | + | chr7_1:53473517-53473536 | Msa1024320:intron | 35.0% | |
| TAAAAATTTATGCAGAGCGG+GGG | + | chr7_1:53473518-53473537 | Msa1024320:intron | 35.0% | |
| GGGGCGAAAATATATATAGT+CGG | - | chr7_1:53473704-53473723 | None:intergenic | 35.0% | |
| CAACCTAAAATCTCAGTTAG+GGG | - | chr7_1:53473723-53473742 | None:intergenic | 35.0% | |
| CCAACCTAAAATCTCAGTTA+GGG | - | chr7_1:53473724-53473743 | None:intergenic | 35.0% | |
| ACCAACCTAAAATCTCAGTT+AGG | - | chr7_1:53473725-53473744 | None:intergenic | 35.0% | |
| AAATACTCTAAGTTCCCGTT+TGG | - | chr7_1:53474092-53474111 | None:intergenic | 35.0% | |
| TATGCTTGGAACAATAATGC+AGG | + | chr7_1:53474198-53474217 | Msa1024320:intron | 35.0% | |
| ! | AGAGAGCACATTGTATTTAG+GGG | + | chr7_1:53474352-53474371 | Msa1024320:three_prime_UTR | 35.0% |
| ACACAATACAATGTGCTTGA+TGG | - | chr7_1:53474434-53474453 | None:intergenic | 35.0% | |
| TGCCAATGGAAGAGATCAAA+TGG | + | chr7_1:53472169-53472188 | Msa1024320:CDS | 40.0% | |
| AGAGATCAAATGGCGTTGTA+TGG | + | chr7_1:53472179-53472198 | Msa1024320:intron | 40.0% | |
| GAGCTTCTCATTTCTTACTC+AGG | + | chr7_1:53472366-53472385 | Msa1024320:intron | 40.0% | |
| GCTTCTCATTTCTTACTCAG+GGG | + | chr7_1:53472368-53472387 | Msa1024320:CDS | 40.0% | |
| GGCAATACCATTGATCTACA+TGG | + | chr7_1:53472434-53472453 | Msa1024320:CDS | 40.0% | |
| GGTCATAGCTATAGAAAGAG+AGG | - | chr7_1:53472608-53472627 | None:intergenic | 40.0% | |
| GGAGAATGATGTTCAAATCG+TGG | + | chr7_1:53472707-53472726 | Msa1024320:CDS | 40.0% | |
| TCGATTGAAATTGATGTCGG+AGG | + | chr7_1:53472756-53472775 | Msa1024320:CDS | 40.0% | |
| ATTGAAATTGATGTCGGAGG+AGG | + | chr7_1:53472759-53472778 | Msa1024320:CDS | 40.0% | |
| ATTTGAATCGATGTGCGACT+AGG | + | chr7_1:53472799-53472818 | Msa1024320:CDS | 40.0% | |
| GACACTACTTGTTCCAGAAT+TGG | + | chr7_1:53472932-53472951 | Msa1024320:CDS | 40.0% | |
| ! | AATGGCGGAATTTCATTGCT+TGG | + | chr7_1:53472979-53472998 | Msa1024320:CDS | 40.0% |
| ! | ATGGCGGAATTTCATTGCTT+GGG | + | chr7_1:53472980-53472999 | Msa1024320:CDS | 40.0% |
| ATCACTGAAAAGCAAAGCAG+AGG | - | chr7_1:53473081-53473100 | None:intergenic | 40.0% | |
| GGATGATGAGTATGTGTTCA+AGG | - | chr7_1:53473264-53473283 | None:intergenic | 40.0% | |
| ATAGTGGCAAAGTAATGCAG+GGG | - | chr7_1:53473306-53473325 | None:intergenic | 40.0% | |
| TACTTTGCCACTATTTCAGC+AGG | + | chr7_1:53473312-53473331 | Msa1024320:CDS | 40.0% | |
| !! | TGCTACGTTGATAACTCTTC+TGG | + | chr7_1:53473391-53473410 | Msa1024320:CDS | 40.0% |
| GCAAAGTGTAGGACTTACTT+GGG | - | chr7_1:53473458-53473477 | None:intergenic | 40.0% | |
| AGCAAAGTGTAGGACTTACT+TGG | - | chr7_1:53473459-53473478 | None:intergenic | 40.0% | |
| AAAAATTTATGCAGAGCGGG+GGG | + | chr7_1:53473519-53473538 | Msa1024320:intron | 40.0% | |
| !! | CCCTAACTGAGATTTTAGGT+TGG | + | chr7_1:53473721-53473740 | Msa1024320:intron | 40.0% |
| ! | ATTCTCATTTAGAGCCCGTT+TGG | + | chr7_1:53473868-53473887 | Msa1024320:intron | 40.0% |
| ! | ATTTAGAGCCCGTTTGGATT+AGG | + | chr7_1:53473874-53473893 | Msa1024320:intron | 40.0% |
| !!! | TTTTTTGGGACATCCTTGTG+TGG | + | chr7_1:53474153-53474172 | Msa1024320:intron | 40.0% |
| ! | CTAGCGAAGGAGGAAATTTT+TGG | + | chr7_1:53474229-53474248 | Msa1024320:three_prime_UTR | 40.0% |
| TAGTGATCATCAAGTGTAGC+TGG | + | chr7_1:53474305-53474324 | Msa1024320:three_prime_UTR | 40.0% | |
| AGTGATCATCAAGTGTAGCT+GGG | + | chr7_1:53474306-53474325 | Msa1024320:three_prime_UTR | 40.0% | |
| TACAGCACCTACCAATGACA+TGG | - | chr7_1:53472022-53472041 | None:intergenic | 45.0% | |
| GGAACAACGGGAATGCTATA+TGG | - | chr7_1:53472063-53472082 | None:intergenic | 45.0% | |
| ! | TCGAAGTTCGTCTGGAACAA+CGG | - | chr7_1:53472076-53472095 | None:intergenic | 45.0% |
| !! | GTACCGATGGAGACAACTTT+TGG | - | chr7_1:53472123-53472142 | None:intergenic | 45.0% |
| TCCATCGGTACTCGATACAT+GGG | + | chr7_1:53472132-53472151 | Msa1024320:CDS | 45.0% | |
| CGCCATTTGATCTCTTCCAT+TGG | - | chr7_1:53472174-53472193 | None:intergenic | 45.0% | |
| !! | GTCAAGTTTTGACACCTGCA+TGG | + | chr7_1:53472233-53472252 | Msa1024320:CDS | 45.0% |
| TTCGAGAATAGCTTCCATGC+AGG | - | chr7_1:53472250-53472269 | None:intergenic | 45.0% | |
| TCAATGGTATTGCCGGAGAA+GGG | - | chr7_1:53472428-53472447 | None:intergenic | 45.0% | |
| ATCAATGGTATTGCCGGAGA+AGG | - | chr7_1:53472429-53472448 | None:intergenic | 45.0% | |
| GTTGATCAATTTGGGGACGA+AGG | - | chr7_1:53472629-53472648 | None:intergenic | 45.0% | |
| ! | TGTTTCCGCTCGTATTGATG+CGG | + | chr7_1:53472686-53472705 | Msa1024320:CDS | 45.0% |
| ATTCTCCGCATCAATACGAG+CGG | - | chr7_1:53472694-53472713 | None:intergenic | 45.0% | |
| !! | CTTGGGAGCATCACAAGAAA+TGG | + | chr7_1:53472997-53473016 | Msa1024320:CDS | 45.0% |
| AGGCATGAGTAATCGAGATC+TGG | + | chr7_1:53473163-53473182 | Msa1024320:CDS | 45.0% | |
| GGGAAAATGATAGGCGACAA+TGG | - | chr7_1:53473438-53473457 | None:intergenic | 45.0% | |
| ! | TCGCCCCTAACTGAGATTTT+AGG | + | chr7_1:53473717-53473736 | Msa1024320:intron | 45.0% |
| GCAGGAACTAATTCTAGCGA+AGG | + | chr7_1:53474216-53474235 | Msa1024320:intron | 45.0% | |
| GGAACTAATTCTAGCGAAGG+AGG | + | chr7_1:53474219-53474238 | Msa1024320:intron | 45.0% | |
| !! | GCGAAGGAGGAAATTTTTGG+CGG | + | chr7_1:53474232-53474251 | Msa1024320:three_prime_UTR | 45.0% |
| ! | CGAAGTTCGTCTGGAACAAC+GGG | - | chr7_1:53472075-53472094 | None:intergenic | 50.0% |
| CTCCATCGGTACTCGATACA+TGG | + | chr7_1:53472131-53472150 | Msa1024320:CDS | 50.0% | |
| !! | TCCCATGTATCGAGTACCGA+TGG | - | chr7_1:53472136-53472155 | None:intergenic | 50.0% |
| CGACTAGGCTTTACGCATCT+GGG | + | chr7_1:53472814-53472833 | Msa1024320:CDS | 50.0% | |
| ! | AGGCTTTACGCATCTGGGAT+TGG | + | chr7_1:53472819-53472838 | Msa1024320:CDS | 50.0% |
| !! | GAAGGGTACTTGTCCCGTGA+TGG | - | chr7_1:53472411-53472430 | None:intergenic | 55.0% |
| ACGGGACAAGTACCCTTCTC+CGG | + | chr7_1:53472413-53472432 | Msa1024320:CDS | 55.0% | |
| GCGACTAGGCTTTACGCATC+TGG | + | chr7_1:53472813-53472832 | Msa1024320:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 53471976 | 53474488 | 53471976 | ID=Msa1024320;Name=Msa1024320 |
| chr7_1 | mRNA | 53471976 | 53474488 | 53471976 | ID=Msa1024320-mRNA-1;Parent=Msa1024320;Name=Msa1024320-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.14|0.12|1|0|0|8|262|454 |
| chr7_1 | exon | 53471976 | 53472192 | 53471976 | ID=Msa1024320-mRNA-1:exon:10564;Parent=Msa1024320-mRNA-1 |
| chr7_1 | exon | 53472226 | 53472351 | 53472226 | ID=Msa1024320-mRNA-1:exon:10565;Parent=Msa1024320-mRNA-1 |
| chr7_1 | exon | 53472367 | 53472582 | 53472367 | ID=Msa1024320-mRNA-1:exon:10566;Parent=Msa1024320-mRNA-1 |
| chr7_1 | exon | 53472598 | 53472840 | 53472598 | ID=Msa1024320-mRNA-1:exon:10567;Parent=Msa1024320-mRNA-1 |
| chr7_1 | exon | 53472877 | 53473095 | 53472877 | ID=Msa1024320-mRNA-1:exon:10568;Parent=Msa1024320-mRNA-1 |
| chr7_1 | exon | 53473117 | 53473240 | 53473117 | ID=Msa1024320-mRNA-1:exon:10569;Parent=Msa1024320-mRNA-1 |
| chr7_1 | exon | 53473247 | 53473459 | 53473247 | ID=Msa1024320-mRNA-1:exon:10570;Parent=Msa1024320-mRNA-1 |
| chr7_1 | exon | 53474220 | 53474488 | 53474220 | ID=Msa1024320-mRNA-1:exon:10571;Parent=Msa1024320-mRNA-1 |
| chr7_1 | CDS | 53471976 | 53472192 | 53471976 | ID=Msa1024320-mRNA-1:cds;Parent=Msa1024320-mRNA-1 |
| chr7_1 | CDS | 53472226 | 53472351 | 53472226 | ID=Msa1024320-mRNA-1:cds;Parent=Msa1024320-mRNA-1 |
| chr7_1 | CDS | 53472367 | 53472582 | 53472367 | ID=Msa1024320-mRNA-1:cds;Parent=Msa1024320-mRNA-1 |
| chr7_1 | CDS | 53472598 | 53472840 | 53472598 | ID=Msa1024320-mRNA-1:cds;Parent=Msa1024320-mRNA-1 |
| chr7_1 | CDS | 53472877 | 53473095 | 53472877 | ID=Msa1024320-mRNA-1:cds;Parent=Msa1024320-mRNA-1 |
| chr7_1 | CDS | 53473117 | 53473240 | 53473117 | ID=Msa1024320-mRNA-1:cds;Parent=Msa1024320-mRNA-1 |
| chr7_1 | CDS | 53473247 | 53473459 | 53473247 | ID=Msa1024320-mRNA-1:cds;Parent=Msa1024320-mRNA-1 |
| chr7_1 | CDS | 53474220 | 53474226 | 53474220 | ID=Msa1024320-mRNA-1:cds;Parent=Msa1024320-mRNA-1 |
| chr7_1 | three_prime_UTR | 53474227 | 53474488 | 53474227 | ID=Msa1024320-mRNA-1:three_prime_utr;Parent=Msa1024320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
