Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028190 | XP_003623977.1 | 88.166 | 338 | 19 | 1 | 1 | 338 | 1 | 317 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028190 | sp|O82775|ATI1_ARATH | 39.118 | 340 | 121 | 11 | 1 | 338 | 1 | 256 | 9.15e-57 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028190 | G7L4P7 | 88.166 | 338 | 19 | 1 | 1 | 338 | 1 | 317 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047460 | Msa1028190 | 0.823729 | 1.184144e-53 | -8.615850e-47 |
| Msa1013070 | Msa1028190 | 0.827857 | 1.240844e-54 | -8.615850e-47 |
| Msa1028190 | Msa1066960 | 0.814333 | 1.624892e-51 | -8.615850e-47 |
| Msa1028190 | Msa1094280 | 0.802910 | 4.482659e-49 | -8.615850e-47 |
| Msa1028190 | Msa1112250 | 0.806343 | 8.612458e-50 | -8.615850e-47 |
| Msa1028190 | Msa1440190 | 0.823784 | 1.149273e-53 | -8.615850e-47 |
| Msa1028190 | Msa1449750 | 0.825236 | 5.231415e-54 | -8.615850e-47 |
| Msa0934840 | Msa1028190 | 0.818403 | 1.996591e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028190 | MtrunA17_Chr7g0247891 | 88.166 | 338 | 19 | 1 | 1 | 338 | 1 | 317 | 0.0 | 597 |
| Msa1028190 | MtrunA17_Chr2g0290951 | 83.730 | 252 | 21 | 1 | 1 | 252 | 1 | 232 | 1.18e-147 | 416 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028190 | AT2G45980.1 | 39.118 | 340 | 121 | 11 | 1 | 338 | 1 | 256 | 9.30e-58 | 187 |
| Msa1028190 | AT4G00355.3 | 39.039 | 333 | 126 | 11 | 6 | 334 | 3 | 262 | 5.13e-55 | 181 |
| Msa1028190 | AT4G00355.2 | 39.039 | 333 | 126 | 11 | 6 | 334 | 3 | 262 | 5.13e-55 | 181 |
| Msa1028190 | AT4G00355.1 | 39.039 | 333 | 126 | 11 | 6 | 334 | 3 | 262 | 5.13e-55 | 181 |
| Msa1028190 | AT4G00355.4 | 41.135 | 282 | 110 | 10 | 6 | 283 | 3 | 232 | 1.51e-47 | 161 |
Find 96 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTACATATGATATT+TGG | 0.188969 | 7_1:+60837856 | None:intergenic |
| AGTGAGATTCAGAATGAATT+TGG | 0.214211 | 7_1:-60839374 | Msa1028190:CDS |
| GGTACAACTCTACCAGATTT+TGG | 0.228299 | 7_1:-60839179 | Msa1028190:CDS |
| ATCTCTCAACAAATCATATA+AGG | 0.316050 | 7_1:-60838336 | Msa1028190:intron |
| GAAGAAAACTTGACATTAGA+AGG | 0.322875 | 7_1:-60839290 | Msa1028190:CDS |
| GGCTACTACCATATGGTAAA+AGG | 0.325013 | 7_1:-60838120 | Msa1028190:three_prime_UTR |
| CTCCTTTGCATGAGCATAGA+TGG | 0.333088 | 7_1:+60838908 | None:intergenic |
| GGACCAACAGCTAGAGTAAA+AGG | 0.352405 | 7_1:+60837794 | None:intergenic |
| GAATAACGGAATTCATAGTT+TGG | 0.354381 | 7_1:+60837992 | None:intergenic |
| CAGATCTTCCTTGCGGAGCT+TGG | 0.354733 | 7_1:-60838950 | Msa1028190:CDS |
| ATCAACAGATTATCTATTCA+TGG | 0.363088 | 7_1:-60839218 | Msa1028190:CDS |
| AACTGCCAATTCCACATAAC+AGG | 0.379067 | 7_1:+60837885 | None:intergenic |
| CATCGTGTCGCGTTCATCTC+TGG | 0.381704 | 7_1:-60840590 | Msa1028190:intron |
| TGTCTCCTGCTCTGCTGATT+CGG | 0.382713 | 7_1:+60839037 | None:intergenic |
| AGCAGCAATGTCTGTTTCAC+TGG | 0.393072 | 7_1:+60839100 | None:intergenic |
| CAAAGGAGGCAAATACATTA+TGG | 0.393151 | 7_1:-60838893 | Msa1028190:CDS |
| AGAAGTGCAGGTTTGATACT+AGG | 0.393998 | 7_1:-60838030 | Msa1028190:three_prime_UTR |
| ATTATTCATTCATATGTTAC+CGG | 0.396888 | 7_1:+60840716 | None:intergenic |
| TTCATCCTTTCCACTAGGCT+TGG | 0.405829 | 7_1:+60839310 | None:intergenic |
| AAACTTGACATTAGAAGGAT+TGG | 0.407672 | 7_1:-60839285 | Msa1028190:CDS |
| ATCTTCCTTGCGGAGCTTGG+TGG | 0.419362 | 7_1:-60838947 | Msa1028190:CDS |
| TTTGACAGTGATAAATCATC+AGG | 0.420814 | 7_1:+60839005 | None:intergenic |
| GCTTGGTCAACGCTGGCGTC+AGG | 0.429346 | 7_1:-60838832 | Msa1028190:CDS |
| CACATCTTTGAGTCGAATCA+TGG | 0.436493 | 7_1:+60838215 | None:intergenic |
| GTGTTCCTGTTATGTGGAAT+TGG | 0.445145 | 7_1:-60837890 | Msa1028190:three_prime_UTR |
| TATGTCAGAGAGGTTGAGAA+TGG | 0.449253 | 7_1:-60838068 | Msa1028190:three_prime_UTR |
| TATTGTGTGTTCCTGTTATG+TGG | 0.450636 | 7_1:-60837896 | Msa1028190:three_prime_UTR |
| AAAGAGCTTTACAACTTAAG+TGG | 0.462236 | 7_1:-60838809 | Msa1028190:CDS |
| CGGAATTCATAGTTTGGTAA+AGG | 0.463600 | 7_1:+60837998 | None:intergenic |
| TCAACTTATGCAGCTGCTCC+TGG | 0.470344 | 7_1:-60839542 | Msa1028190:CDS |
| GGATGTGTCAAAGGAGTTTG+AGG | 0.473894 | 7_1:-60839264 | Msa1028190:CDS |
| ATGTAACGTTTAAGAAGTGC+AGG | 0.475847 | 7_1:-60838042 | Msa1028190:three_prime_UTR |
| AGAGATTTATGTGTCTGTAT+AGG | 0.478008 | 7_1:+60838353 | None:intergenic |
| GAAGTGACCAGACATGAATA+AGG | 0.494471 | 7_1:+60839445 | None:intergenic |
| AATATATAATGTTTGAATAA+CGG | 0.500958 | 7_1:+60837978 | None:intergenic |
| GTCTTCTCGCGGTAATGACT+GGG | 0.502839 | 7_1:-60839585 | Msa1028190:CDS |
| TTCATTGCAGCAACAGTGAT+GGG | 0.502883 | 7_1:-60838864 | Msa1028190:CDS |
| AACTCAACTTCACGTGGACC+AGG | 0.507089 | 7_1:+60839524 | None:intergenic |
| TGTTTCCACAGGCAAGGAGC+AGG | 0.508812 | 7_1:-60838248 | Msa1028190:intron |
| CTCAAAGATGTGATCGTTGG+TGG | 0.510999 | 7_1:-60838204 | Msa1028190:CDS |
| ATGGCAGGAACTGAAGATGA+AGG | 0.518426 | 7_1:-60839614 | Msa1028190:CDS |
| TATTCATGGAAAACAGTTTG+AGG | 0.519571 | 7_1:-60839204 | Msa1028190:CDS |
| GGAAGAGCTTTCTCTGATCA+AGG | 0.520300 | 7_1:+60838167 | None:intergenic |
| TGATCAAGGAGCCACGGCGG+TGG | 0.522980 | 7_1:+60838181 | None:intergenic |
| TTCATGCTTACTTGGTGGAA+AGG | 0.529697 | 7_1:+60839421 | None:intergenic |
| TCAAACGCCTTATTCATGTC+TGG | 0.529833 | 7_1:-60839452 | Msa1028190:CDS |
| TGCAGCAACAGTGATGGGTT+TGG | 0.532584 | 7_1:-60838859 | Msa1028190:CDS |
| TTTCATTGCAGCAACAGTGA+TGG | 0.533829 | 7_1:-60838865 | Msa1028190:CDS |
| AACAACCGAATCAGCAGAGC+AGG | 0.534322 | 7_1:-60839042 | Msa1028190:CDS |
| TAAGCATGAAAACTTGCCAT+TGG | 0.534678 | 7_1:-60839408 | Msa1028190:CDS |
| AGAAGGATTGGATGTGTCAA+AGG | 0.536048 | 7_1:-60839273 | Msa1028190:CDS |
| TTATGAAGACAAGAGATGGC+AGG | 0.538219 | 7_1:-60839629 | Msa1028190:intron |
| TGGTGATGCTTGGTCAACGC+TGG | 0.540199 | 7_1:-60838839 | Msa1028190:CDS |
| ATCAGCAGAGCAGGAGACAA+AGG | 0.541008 | 7_1:-60839033 | Msa1028190:CDS |
| CAAAGATATCGCCTCTGTAG+AGG | 0.545508 | 7_1:-60839348 | Msa1028190:CDS |
| TGAAGGTGGCTACTACCATA+TGG | 0.546356 | 7_1:-60838127 | Msa1028190:three_prime_UTR |
| CGCTTCCACCAAGCTCCGCA+AGG | 0.554434 | 7_1:+60838942 | None:intergenic |
| ATGTCAGAGAGGTTGAGAAT+GGG | 0.554482 | 7_1:-60838067 | Msa1028190:three_prime_UTR |
| GCTCCGCAAGGAAGATCTGA+AGG | 0.560737 | 7_1:+60838954 | None:intergenic |
| GTGATGGGTTTGGTGATGCT+TGG | 0.561745 | 7_1:-60838849 | Msa1028190:CDS |
| TCCACGTGAAGTTGAGTTGA+AGG | 0.562439 | 7_1:-60839519 | Msa1028190:CDS |
| CATGGAAAACAGTTTGAGGA+AGG | 0.566354 | 7_1:-60839200 | Msa1028190:CDS |
| TTATGTGTCTGTATAGGATG+AGG | 0.566846 | 7_1:+60838359 | None:intergenic |
| TGCGGAGCTTGGTGGAAGCG+AGG | 0.567411 | 7_1:-60838939 | Msa1028190:CDS |
| ACATCTTTGAGTCGAATCAT+GGG | 0.569536 | 7_1:+60838216 | None:intergenic |
| CGACTCAAAGATGTGATCGT+TGG | 0.574960 | 7_1:-60838207 | Msa1028190:CDS |
| TGGCAGGAACTGAAGATGAA+GGG | 0.576492 | 7_1:-60839613 | Msa1028190:CDS |
| CATCTATGCTCATGCAAAGG+AGG | 0.578296 | 7_1:-60838907 | Msa1028190:CDS |
| GAAATTTAACTCGGTGAAGG+TGG | 0.579228 | 7_1:-60838141 | Msa1028190:exon |
| GCAGCAATGTCTGTTTCACT+GGG | 0.581872 | 7_1:+60839101 | None:intergenic |
| TGAGTTGAAGGATGATGACA+AGG | 0.594626 | 7_1:-60839507 | Msa1028190:CDS |
| AGCGACCAAGCCTAGTGGAA+AGG | 0.597200 | 7_1:-60839315 | Msa1028190:CDS |
| GGCAGGAACTGAAGATGAAG+GGG | 0.599526 | 7_1:-60839612 | Msa1028190:CDS |
| GCTGAAATTTAACTCGGTGA+AGG | 0.601929 | 7_1:-60838144 | Msa1028190:exon |
| TCCTTCAACTCAACTTCACG+TGG | 0.602249 | 7_1:+60839518 | None:intergenic |
| CTCCATCTATGCTCATGCAA+AGG | 0.603944 | 7_1:-60838910 | Msa1028190:CDS |
| GCAAGTCAGTATTTCTGATG+AGG | 0.612309 | 7_1:-60838787 | Msa1028190:intron |
| TCACTATAGTCAGTTTCCAA+TGG | 0.627762 | 7_1:+60839392 | None:intergenic |
| TCTTCCGCTGAAATTTAACT+CGG | 0.629458 | 7_1:-60838150 | Msa1028190:exon |
| AACCCTTCAGATCTTCCTTG+CGG | 0.630132 | 7_1:-60838957 | Msa1028190:CDS |
| CGAAAAGTTGTATGTCAGAG+AGG | 0.635492 | 7_1:-60838078 | Msa1028190:three_prime_UTR |
| GAAGAAGCGACCAAGCCTAG+TGG | 0.639637 | 7_1:-60839320 | Msa1028190:CDS |
| ATCGTTGGTGGCCACCGCCG+TGG | 0.649963 | 7_1:-60838192 | Msa1028190:CDS |
| ACGCGACACGATGTTCGTAG+TGG | 0.655563 | 7_1:+60840600 | None:intergenic |
| CTCTGATCAAGGAGCCACGG+CGG | 0.656435 | 7_1:+60838178 | None:intergenic |
| TTCTCGCGGTAATGACTGGG+AGG | 0.656632 | 7_1:-60839582 | Msa1028190:CDS |
| TTTCTCTGATCAAGGAGCCA+CGG | 0.661567 | 7_1:+60838175 | None:intergenic |
| GACACGATGTTCGTAGTGGG+TGG | 0.666309 | 7_1:+60840604 | None:intergenic |
| TTCACCGAGTTAAATTTCAG+CGG | 0.667738 | 7_1:+60838146 | None:intergenic |
| CTCCGCAAGGAAGATCTGAA+GGG | 0.679694 | 7_1:+60838955 | None:intergenic |
| GAAGGGGAAAAGTCTTCTCG+CGG | 0.683817 | 7_1:-60839596 | Msa1028190:CDS |
| CTTTGCATGAGCATAGATGG+AGG | 0.694461 | 7_1:+60838911 | None:intergenic |
| TTGAAGGATGATGACAAGGA+AGG | 0.695939 | 7_1:-60839503 | Msa1028190:CDS |
| TTCTTCACGAGCCTCTACAG+AGG | 0.708502 | 7_1:+60839337 | None:intergenic |
| TGTATGTATGTATATCGATG+AGG | 0.712220 | 7_1:+60840640 | None:intergenic |
| CAGCAATGTCTGTTTCACTG+GGG | 0.782536 | 7_1:+60839102 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATTTTAATTTACTATTA+GGG | - | chr7_1:60838278-60838297 | Msa1028190:intron | 10.0% |
| !!! | TTATTTTAATTTACTATTAG+GGG | - | chr7_1:60838279-60838298 | Msa1028190:intron | 10.0% |
| !! | AATATATAATGTTTGAATAA+CGG | + | chr7_1:60840531-60840550 | None:intergenic | 10.0% |
| !!! | GGTTATTTTAATTTACTATT+AGG | - | chr7_1:60838277-60838296 | Msa1028190:intron | 15.0% |
| !! | TATTTATATTCATTCTTCTA+AGG | - | chr7_1:60839744-60839763 | Msa1028190:intron | 15.0% |
| !! | CTTAATTTACATATGATATT+TGG | + | chr7_1:60840653-60840672 | None:intergenic | 15.0% |
| !!! | TAACTATTTGCATGAAATTT+TGG | - | chr7_1:60838338-60838357 | Msa1028190:CDS | 20.0% |
| !! | AAACAAATACAATTATGCAA+GGG | + | chr7_1:60838783-60838802 | None:intergenic | 20.0% |
| !! | AAAACAAATACAATTATGCA+AGG | + | chr7_1:60838784-60838803 | None:intergenic | 20.0% |
| !! | TATAATGTTATGCATAAAGA+TGG | - | chr7_1:60839876-60839895 | Msa1028190:intron | 20.0% |
| !!! | TACTTTAAAAATGAAGGTTA+TGG | - | chr7_1:60840056-60840075 | Msa1028190:intron | 20.0% |
| !!! | ACTTTAAAAATGAAGGTTAT+GGG | - | chr7_1:60840057-60840076 | Msa1028190:intron | 20.0% |
| !!! | GCAATGTAATATTTATTTTG+TGG | - | chr7_1:60840090-60840109 | Msa1028190:intron | 20.0% |
| !! | TTGTTTATTTGTGCTGTTAT+TGG | - | chr7_1:60838075-60838094 | Msa1028190:three_prime_UTR | 25.0% |
| ! | AAATAGTTAGATCAATCTCT+GGG | + | chr7_1:60838327-60838346 | None:intergenic | 25.0% |
| !!! | GGTTATTTTAGTTTTTTCAG+TGG | - | chr7_1:60838359-60838378 | Msa1028190:CDS | 25.0% |
| ! | TACAAGAAAACTACTACTTT+CGG | + | chr7_1:60838705-60838724 | None:intergenic | 25.0% |
| !!! | TTTTTTATGAAGACAAGAGA+TGG | - | chr7_1:60838873-60838892 | Msa1028190:CDS | 25.0% |
| ! | ATCAACAGATTATCTATTCA+TGG | - | chr7_1:60839288-60839307 | Msa1028190:CDS | 25.0% |
| ! | TATGCATAACATTATAAACG+AGG | + | chr7_1:60839872-60839891 | None:intergenic | 25.0% |
| !! | ATTTTTACTAGCACATCATA+AGG | - | chr7_1:60839959-60839978 | Msa1028190:intron | 25.0% |
| !! | TACTCGTACTTTAAAAATGA+AGG | - | chr7_1:60840050-60840069 | Msa1028190:intron | 25.0% |
| ! | ATCTCTCAACAAATCATATA+AGG | - | chr7_1:60840170-60840189 | Msa1028190:intron | 25.0% |
| !!! | TAATGAAGTGATTGTTTTGA+TGG | - | chr7_1:60840674-60840693 | Msa1028190:five_prime_UTR | 25.0% |
| TGTATGTATGTATATCGATG+AGG | + | chr7_1:60837869-60837888 | None:intergenic | 30.0% | |
| !! | GTGTTGTTATTTGAATTCAG+TGG | - | chr7_1:60838156-60838175 | Msa1028190:CDS | 30.0% |
| ! | GTTGATGTGAATTTTGTGAT+TGG | - | chr7_1:60838222-60838241 | Msa1028190:CDS | 30.0% |
| ! | TAGGTCATGTTTTCACTTAT+AGG | - | chr7_1:60838256-60838275 | Msa1028190:intron | 30.0% |
| CAAATAGTTAGATCAATCTC+TGG | + | chr7_1:60838328-60838347 | None:intergenic | 30.0% | |
| AGTATAACCTTGTAATATCC+CGG | - | chr7_1:60838386-60838405 | Msa1028190:intron | 30.0% | |
| ! | TCTGCGATTACGATTTTTAA+GGG | + | chr7_1:60838485-60838504 | None:intergenic | 30.0% |
| ! | TTCTGCGATTACGATTTTTA+AGG | + | chr7_1:60838486-60838505 | None:intergenic | 30.0% |
| AGTGAGATTCAGAATGAATT+TGG | - | chr7_1:60839132-60839151 | Msa1028190:CDS | 30.0% | |
| GAAGAAAACTTGACATTAGA+AGG | - | chr7_1:60839216-60839235 | Msa1028190:CDS | 30.0% | |
| AAACTTGACATTAGAAGGAT+TGG | - | chr7_1:60839221-60839240 | Msa1028190:CDS | 30.0% | |
| TATTCATGGAAAACAGTTTG+AGG | - | chr7_1:60839302-60839321 | Msa1028190:CDS | 30.0% | |
| ! | TTTTCAGTCAAACCAAAATC+TGG | + | chr7_1:60839342-60839361 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTGACTGAAAAAG+AGG | - | chr7_1:60839344-60839363 | Msa1028190:CDS | 30.0% |
| ! | GGAAAGAATTGTATTTTGCA+GGG | + | chr7_1:60839386-60839405 | None:intergenic | 30.0% |
| TTTGACAGTGATAAATCATC+AGG | + | chr7_1:60839504-60839523 | None:intergenic | 30.0% | |
| AAAGAGCTTTACAACTTAAG+TGG | - | chr7_1:60839697-60839716 | Msa1028190:intron | 30.0% | |
| !! | GGTTGATAGTGTCAATTATT+TGG | - | chr7_1:60839897-60839916 | Msa1028190:intron | 30.0% |
| AGAGATTTATGTGTCTGTAT+AGG | + | chr7_1:60840156-60840175 | None:intergenic | 30.0% | |
| ! | GAATAACGGAATTCATAGTT+TGG | + | chr7_1:60840517-60840536 | None:intergenic | 30.0% |
| GTGATTGGAGTGAAAGAAAT+AGG | - | chr7_1:60838237-60838256 | Msa1028190:CDS | 35.0% | |
| ! | TTAGGGGCATGAAAATTTAG+AGG | - | chr7_1:60838295-60838314 | Msa1028190:intron | 35.0% |
| GTATAACCTTGTAATATCCC+GGG | - | chr7_1:60838387-60838406 | Msa1028190:intron | 35.0% | |
| TTCTACAAACATTTCCAGGA+GGG | + | chr7_1:60838424-60838443 | None:intergenic | 35.0% | |
| ATTCTACAAACATTTCCAGG+AGG | + | chr7_1:60838425-60838444 | None:intergenic | 35.0% | |
| TCCTGGAAATGTTTGTAGAA+TGG | - | chr7_1:60838424-60838443 | Msa1028190:intron | 35.0% | |
| ACCATTCTACAAACATTTCC+AGG | + | chr7_1:60838428-60838447 | None:intergenic | 35.0% | |
| ATTCCTTGTGTAAATAGGCA+CGG | + | chr7_1:60838578-60838597 | None:intergenic | 35.0% | |
| GAGTCATTCCTTGTGTAAAT+AGG | + | chr7_1:60838583-60838602 | None:intergenic | 35.0% | |
| AACTACTACTTTCGGAAGAA+AGG | + | chr7_1:60838697-60838716 | None:intergenic | 35.0% | |
| ! | AAGTTTTCATGCTTACTTGG+TGG | + | chr7_1:60839093-60839112 | None:intergenic | 35.0% |
| TAAGCATGAAAACTTGCCAT+TGG | - | chr7_1:60839098-60839117 | Msa1028190:CDS | 35.0% | |
| TCACTATAGTCAGTTTCCAA+TGG | + | chr7_1:60839117-60839136 | None:intergenic | 35.0% | |
| ! | TTTTCTTCATCCTTTCCACT+AGG | + | chr7_1:60839204-60839223 | None:intergenic | 35.0% |
| ! | GGGAAAGAATTGTATTTTGC+AGG | + | chr7_1:60839387-60839406 | None:intergenic | 35.0% |
| !!! | AGGGTTTTGTTTGTCATCTT+TGG | + | chr7_1:60839535-60839554 | None:intergenic | 35.0% |
| CAAAGGAGGCAAATACATTA+TGG | - | chr7_1:60839613-60839632 | Msa1028190:CDS | 35.0% | |
| !! | ATGAGTTTGTTGTACACAAC+TGG | + | chr7_1:60839941-60839960 | None:intergenic | 35.0% |
| TTATGTGTCTGTATAGGATG+AGG | + | chr7_1:60840150-60840169 | None:intergenic | 35.0% | |
| ACATCTTTGAGTCGAATCAT+GGG | + | chr7_1:60840293-60840312 | None:intergenic | 35.0% | |
| TCTTCCGCTGAAATTTAACT+CGG | - | chr7_1:60840356-60840375 | Msa1028190:intron | 35.0% | |
| TTCACCGAGTTAAATTTCAG+CGG | + | chr7_1:60840363-60840382 | None:intergenic | 35.0% | |
| !! | GCTTTTAGCCTTTTACCATA+TGG | + | chr7_1:60840397-60840416 | None:intergenic | 35.0% |
| ! | ATGTAACGTTTAAGAAGTGC+AGG | - | chr7_1:60840464-60840483 | Msa1028190:intron | 35.0% |
| CGGAATTCATAGTTTGGTAA+AGG | + | chr7_1:60840511-60840530 | None:intergenic | 35.0% | |
| TATTGTGTGTTCCTGTTATG+TGG | - | chr7_1:60840610-60840629 | Msa1028190:five_prime_UTR | 35.0% | |
| !!! | TGAAGTGATTGTTTTGATGG+CGG | - | chr7_1:60840677-60840696 | Msa1028190:five_prime_UTR | 35.0% |
| ! | TTTCCTTTTACTCTAGCTGT+TGG | - | chr7_1:60840709-60840728 | Msa1028190:five_prime_UTR | 35.0% |
| GCTGTTATTGGATCTTTCTG+TGG | - | chr7_1:60838087-60838106 | Msa1028190:three_prime_UTR | 40.0% | |
| TTATGAAGACAAGAGATGGC+AGG | - | chr7_1:60838877-60838896 | Msa1028190:CDS | 40.0% | |
| ! | TGAGTTGAAGGATGATGACA+AGG | - | chr7_1:60838999-60839018 | Msa1028190:CDS | 40.0% |
| TTGAAGGATGATGACAAGGA+AGG | - | chr7_1:60839003-60839022 | Msa1028190:CDS | 40.0% | |
| ! | TCAAACGCCTTATTCATGTC+TGG | - | chr7_1:60839054-60839073 | Msa1028190:CDS | 40.0% |
| GAAGTGACCAGACATGAATA+AGG | + | chr7_1:60839064-60839083 | None:intergenic | 40.0% | |
| ! | TTCATGCTTACTTGGTGGAA+AGG | + | chr7_1:60839088-60839107 | None:intergenic | 40.0% |
| ! | GGCAAGTTTTCATGCTTACT+TGG | + | chr7_1:60839096-60839115 | None:intergenic | 40.0% |
| AGAAGGATTGGATGTGTCAA+AGG | - | chr7_1:60839233-60839252 | Msa1028190:CDS | 40.0% | |
| CATGGAAAACAGTTTGAGGA+AGG | - | chr7_1:60839306-60839325 | Msa1028190:CDS | 40.0% | |
| ! | GGTACAACTCTACCAGATTT+TGG | - | chr7_1:60839327-60839346 | Msa1028190:CDS | 40.0% |
| TTTCATTGCAGCAACAGTGA+TGG | - | chr7_1:60839641-60839660 | Msa1028190:intron | 40.0% | |
| TTCATTGCAGCAACAGTGAT+GGG | - | chr7_1:60839642-60839661 | Msa1028190:intron | 40.0% | |
| ! | GCAAGTCAGTATTTCTGATG+AGG | - | chr7_1:60839719-60839738 | Msa1028190:intron | 40.0% |
| CCTGTGGAAACAATCACTAT+TGG | + | chr7_1:60840250-60840269 | None:intergenic | 40.0% | |
| CCAATAGTGATTGTTTCCAC+AGG | - | chr7_1:60840247-60840266 | Msa1028190:intron | 40.0% | |
| CACATCTTTGAGTCGAATCA+TGG | + | chr7_1:60840294-60840313 | None:intergenic | 40.0% | |
| ! | GCTGAAATTTAACTCGGTGA+AGG | - | chr7_1:60840362-60840381 | Msa1028190:intron | 40.0% |
| ! | GAAATTTAACTCGGTGAAGG+TGG | - | chr7_1:60840365-60840384 | Msa1028190:intron | 40.0% |
| GGCTACTACCATATGGTAAA+AGG | - | chr7_1:60840386-60840405 | Msa1028190:intron | 40.0% | |
| CGAAAAGTTGTATGTCAGAG+AGG | - | chr7_1:60840428-60840447 | Msa1028190:intron | 40.0% | |
| TATGTCAGAGAGGTTGAGAA+TGG | - | chr7_1:60840438-60840457 | Msa1028190:intron | 40.0% | |
| ATGTCAGAGAGGTTGAGAAT+GGG | - | chr7_1:60840439-60840458 | Msa1028190:intron | 40.0% | |
| ! | AGAAGTGCAGGTTTGATACT+AGG | - | chr7_1:60840476-60840495 | Msa1028190:intron | 40.0% |
| GTGTTCCTGTTATGTGGAAT+TGG | - | chr7_1:60840616-60840635 | Msa1028190:five_prime_UTR | 40.0% | |
| AACTGCCAATTCCACATAAC+AGG | + | chr7_1:60840624-60840643 | None:intergenic | 40.0% | |
| !!! | GAAGTGATTGTTTTGATGGC+GGG | - | chr7_1:60840678-60840697 | Msa1028190:five_prime_UTR | 40.0% |
| TAACCTTGTAATATCCCGGG+CGG | - | chr7_1:60838390-60838409 | Msa1028190:intron | 45.0% | |
| TCACCGTGCCTATTTACACA+AGG | - | chr7_1:60838572-60838591 | Msa1028190:intron | 45.0% | |
| CAATTATGCAAGGGAGAGCA+GGG | + | chr7_1:60838774-60838793 | None:intergenic | 45.0% | |
| ACAATTATGCAAGGGAGAGC+AGG | + | chr7_1:60838775-60838794 | None:intergenic | 45.0% | |
| ATGGCAGGAACTGAAGATGA+AGG | - | chr7_1:60838892-60838911 | Msa1028190:CDS | 45.0% | |
| TGGCAGGAACTGAAGATGAA+GGG | - | chr7_1:60838893-60838912 | Msa1028190:CDS | 45.0% | |
| !! | TCCACGTGAAGTTGAGTTGA+AGG | - | chr7_1:60838987-60839006 | Msa1028190:CDS | 45.0% |
| TCCTTCAACTCAACTTCACG+TGG | + | chr7_1:60838991-60839010 | None:intergenic | 45.0% | |
| CAAAGATATCGCCTCTGTAG+AGG | - | chr7_1:60839158-60839177 | Msa1028190:CDS | 45.0% | |
| TTCATCCTTTCCACTAGGCT+TGG | + | chr7_1:60839199-60839218 | None:intergenic | 45.0% | |
| GGATGTGTCAAAGGAGTTTG+AGG | - | chr7_1:60839242-60839261 | Msa1028190:CDS | 45.0% | |
| CAGCAATGTCTGTTTCACTG+GGG | + | chr7_1:60839407-60839426 | None:intergenic | 45.0% | |
| GCAGCAATGTCTGTTTCACT+GGG | + | chr7_1:60839408-60839427 | None:intergenic | 45.0% | |
| AGCAGCAATGTCTGTTTCAC+TGG | + | chr7_1:60839409-60839428 | None:intergenic | 45.0% | |
| AACCCTTCAGATCTTCCTTG+CGG | - | chr7_1:60839549-60839568 | Msa1028190:CDS | 45.0% | |
| CTTTGCATGAGCATAGATGG+AGG | + | chr7_1:60839598-60839617 | None:intergenic | 45.0% | |
| CTCCATCTATGCTCATGCAA+AGG | - | chr7_1:60839596-60839615 | Msa1028190:CDS | 45.0% | |
| CTCCTTTGCATGAGCATAGA+TGG | + | chr7_1:60839601-60839620 | None:intergenic | 45.0% | |
| CATCTATGCTCATGCAAAGG+AGG | - | chr7_1:60839599-60839618 | Msa1028190:CDS | 45.0% | |
| AGTGATTGTTTCCACAGGCA+AGG | - | chr7_1:60840252-60840271 | Msa1028190:intron | 45.0% | |
| CGACTCAAAGATGTGATCGT+TGG | - | chr7_1:60840299-60840318 | Msa1028190:intron | 45.0% | |
| CTCAAAGATGTGATCGTTGG+TGG | - | chr7_1:60840302-60840321 | Msa1028190:intron | 45.0% | |
| TTTCTCTGATCAAGGAGCCA+CGG | + | chr7_1:60840334-60840353 | None:intergenic | 45.0% | |
| GGAAGAGCTTTCTCTGATCA+AGG | + | chr7_1:60840342-60840361 | None:intergenic | 45.0% | |
| TGAAGGTGGCTACTACCATA+TGG | - | chr7_1:60840379-60840398 | Msa1028190:intron | 45.0% | |
| GGACCAACAGCTAGAGTAAA+AGG | + | chr7_1:60840715-60840734 | None:intergenic | 45.0% | |
| !!! | TTTTTATACTATTATTATTA+TGG | + | chr7_1:60837829-60837848 | None:intergenic | 5.0% |
| AATCCGCCCGGGATATTACA+AGG | + | chr7_1:60838396-60838415 | None:intergenic | 50.0% | |
| ! | AGGAGGGTTTAAAATCCGCC+CGG | + | chr7_1:60838408-60838427 | None:intergenic | 50.0% |
| ACAAGCATGTGCAGGGTCAT+TGG | + | chr7_1:60838650-60838669 | None:intergenic | 50.0% | |
| ACAGCTCACAAGCATGTGCA+GGG | + | chr7_1:60838657-60838676 | None:intergenic | 50.0% | |
| GAGCAGGGCTCGACAAAAAA+AGG | + | chr7_1:60838759-60838778 | None:intergenic | 50.0% | |
| GGCAGGAACTGAAGATGAAG+GGG | - | chr7_1:60838894-60838913 | Msa1028190:CDS | 50.0% | |
| GAAGGGGAAAAGTCTTCTCG+CGG | - | chr7_1:60838910-60838929 | Msa1028190:CDS | 50.0% | |
| AGTCTTCTCGCGGTAATGAC+TGG | - | chr7_1:60838920-60838939 | Msa1028190:CDS | 50.0% | |
| GTCTTCTCGCGGTAATGACT+GGG | - | chr7_1:60838921-60838940 | Msa1028190:CDS | 50.0% | |
| TCAACTTATGCAGCTGCTCC+TGG | - | chr7_1:60838964-60838983 | Msa1028190:CDS | 50.0% | |
| AACTCAACTTCACGTGGACC+AGG | + | chr7_1:60838985-60839004 | None:intergenic | 50.0% | |
| TTCTTCACGAGCCTCTACAG+AGG | + | chr7_1:60839172-60839191 | None:intergenic | 50.0% | |
| AACAACCGAATCAGCAGAGC+AGG | - | chr7_1:60839464-60839483 | Msa1028190:CDS | 50.0% | |
| ! | TGTCTCCTGCTCTGCTGATT+CGG | + | chr7_1:60839472-60839491 | None:intergenic | 50.0% |
| ATCAGCAGAGCAGGAGACAA+AGG | - | chr7_1:60839473-60839492 | Msa1028190:CDS | 50.0% | |
| CTCCGCAAGGAAGATCTGAA+GGG | + | chr7_1:60839554-60839573 | None:intergenic | 50.0% | |
| !! | TGCAGCAACAGTGATGGGTT+TGG | - | chr7_1:60839647-60839666 | Msa1028190:intron | 50.0% |
| !! | GTGATGGGTTTGGTGATGCT+TGG | - | chr7_1:60839657-60839676 | Msa1028190:intron | 50.0% |
| ! | GACACGATGTTCGTAGTGGG+TGG | + | chr7_1:60837905-60837924 | None:intergenic | 55.0% |
| CGCGACACGATGTTCGTAGT+GGG | + | chr7_1:60837908-60837927 | None:intergenic | 55.0% | |
| ACGCGACACGATGTTCGTAG+TGG | + | chr7_1:60837909-60837928 | None:intergenic | 55.0% | |
| CATCGTGTCGCGTTCATCTC+TGG | - | chr7_1:60837916-60837935 | Msa1028190:three_prime_UTR | 55.0% | |
| ! | GGAGGGTTTAAAATCCGCCC+GGG | + | chr7_1:60838407-60838426 | None:intergenic | 55.0% |
| !! | GGGCGGATTTTAAACCCTCC+TGG | - | chr7_1:60838407-60838426 | Msa1028190:intron | 55.0% |
| CACAGCTCACAAGCATGTGC+AGG | + | chr7_1:60838658-60838677 | None:intergenic | 55.0% | |
| TTCTCGCGGTAATGACTGGG+AGG | - | chr7_1:60838924-60838943 | Msa1028190:CDS | 55.0% | |
| GAAGAAGCGACCAAGCCTAG+TGG | - | chr7_1:60839186-60839205 | Msa1028190:CDS | 55.0% | |
| AGCGACCAAGCCTAGTGGAA+AGG | - | chr7_1:60839191-60839210 | Msa1028190:CDS | 55.0% | |
| GCTCCGCAAGGAAGATCTGA+AGG | + | chr7_1:60839555-60839574 | None:intergenic | 55.0% | |
| CAGATCTTCCTTGCGGAGCT+TGG | - | chr7_1:60839556-60839575 | Msa1028190:CDS | 55.0% | |
| ATCTTCCTTGCGGAGCTTGG+TGG | - | chr7_1:60839559-60839578 | Msa1028190:CDS | 55.0% | |
| ! | TGGTGATGCTTGGTCAACGC+TGG | - | chr7_1:60839667-60839686 | Msa1028190:intron | 55.0% |
| TGTTTCCACAGGCAAGGAGC+AGG | - | chr7_1:60840258-60840277 | Msa1028190:intron | 55.0% | |
| AGCATCCTGCTCCTTGCCTG+TGG | + | chr7_1:60840266-60840285 | None:intergenic | 60.0% | |
| CTCTGATCAAGGAGCCACGG+CGG | + | chr7_1:60840331-60840350 | None:intergenic | 60.0% | |
| CGCTTCCACCAAGCTCCGCA+AGG | + | chr7_1:60839567-60839586 | None:intergenic | 65.0% | |
| ! | TGCGGAGCTTGGTGGAAGCG+AGG | - | chr7_1:60839567-60839586 | Msa1028190:CDS | 65.0% |
| GCTTGGTCAACGCTGGCGTC+AGG | - | chr7_1:60839674-60839693 | Msa1028190:intron | 65.0% | |
| TGATCAAGGAGCCACGGCGG+TGG | + | chr7_1:60840328-60840347 | None:intergenic | 65.0% | |
| !! | ATCGTTGGTGGCCACCGCCG+TGG | - | chr7_1:60840314-60840333 | Msa1028190:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 60837793 | 60840735 | 60837793 | ID=Msa1028190;Name=Msa1028190 |
| chr7_1 | mRNA | 60837793 | 60840735 | 60837793 | ID=Msa1028190-mRNA-1;Parent=Msa1028190;Name=Msa1028190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=152|0.33|0.75|0.75|0.66|0.5|4|362|338 |
| chr7_1 | exon | 60837793 | 60838259 | 60837793 | ID=Msa1028190-mRNA-1:exon:12751;Parent=Msa1028190-mRNA-1 |
| chr7_1 | exon | 60838337 | 60838399 | 60838337 | ID=Msa1028190-mRNA-1:exon:12750;Parent=Msa1028190-mRNA-1 |
| chr7_1 | exon | 60838788 | 60839643 | 60838788 | ID=Msa1028190-mRNA-1:exon:12749;Parent=Msa1028190-mRNA-1 |
| chr7_1 | exon | 60840591 | 60840735 | 60840591 | ID=Msa1028190-mRNA-1:exon:12748;Parent=Msa1028190-mRNA-1 |
| chr7_1 | five_prime_UTR | 60840591 | 60840735 | 60840591 | ID=Msa1028190-mRNA-1:five_prime_utr;Parent=Msa1028190-mRNA-1 |
| chr7_1 | five_prime_UTR | 60839637 | 60839643 | 60839637 | ID=Msa1028190-mRNA-1:five_prime_utr;Parent=Msa1028190-mRNA-1 |
| chr7_1 | CDS | 60838788 | 60839636 | 60838788 | ID=Msa1028190-mRNA-1:cds;Parent=Msa1028190-mRNA-1 |
| chr7_1 | CDS | 60838337 | 60838399 | 60838337 | ID=Msa1028190-mRNA-1:cds;Parent=Msa1028190-mRNA-1 |
| chr7_1 | CDS | 60838155 | 60838259 | 60838155 | ID=Msa1028190-mRNA-1:cds;Parent=Msa1028190-mRNA-1 |
| chr7_1 | three_prime_UTR | 60837793 | 60838154 | 60837793 | ID=Msa1028190-mRNA-1:three_prime_utr;Parent=Msa1028190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
