Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112250 | XP_003623977.1 | 87.574 | 338 | 21 | 1 | 1 | 338 | 1 | 317 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112250 | sp|O82775|ATI1_ARATH | 39.412 | 340 | 120 | 11 | 1 | 338 | 1 | 256 | 2.09e-57 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112250 | G7L4P7 | 87.574 | 338 | 21 | 1 | 1 | 338 | 1 | 317 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa1112250 | 0.806137 | 9.519922e-50 | -8.615850e-47 |
| Msa0049750 | Msa1112250 | 0.808131 | 3.601553e-50 | -8.615850e-47 |
| Msa1013070 | Msa1112250 | 0.805009 | 1.641934e-49 | -8.615850e-47 |
| Msa1028190 | Msa1112250 | 0.806343 | 8.612458e-50 | -8.615850e-47 |
| Msa1066810 | Msa1112250 | 0.862724 | 4.137116e-64 | -8.615850e-47 |
| Msa1066960 | Msa1112250 | 0.870918 | 1.014490e-66 | -8.615850e-47 |
| Msa1112250 | Msa1208370 | 0.819210 | 1.308976e-52 | -8.615850e-47 |
| Msa1112250 | Msa1440190 | 0.801641 | 8.182906e-49 | -8.615850e-47 |
| Msa1112250 | Msa1449750 | 0.802978 | 4.340163e-49 | -8.615850e-47 |
| Msa0871430 | Msa1112250 | 0.816006 | 6.907474e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112250 | MtrunA17_Chr7g0247891 | 87.574 | 338 | 21 | 1 | 1 | 338 | 1 | 317 | 0.0 | 593 |
| Msa1112250 | MtrunA17_Chr2g0290951 | 82.937 | 252 | 23 | 1 | 1 | 252 | 1 | 232 | 2.32e-146 | 412 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112250 | AT2G45980.1 | 39.412 | 340 | 120 | 11 | 1 | 338 | 1 | 256 | 2.13e-58 | 189 |
| Msa1112250 | AT4G00355.3 | 39.039 | 333 | 126 | 11 | 6 | 334 | 3 | 262 | 3.96e-55 | 181 |
| Msa1112250 | AT4G00355.2 | 39.039 | 333 | 126 | 11 | 6 | 334 | 3 | 262 | 3.96e-55 | 181 |
| Msa1112250 | AT4G00355.1 | 39.039 | 333 | 126 | 11 | 6 | 334 | 3 | 262 | 3.96e-55 | 181 |
| Msa1112250 | AT4G00355.4 | 41.135 | 282 | 110 | 10 | 6 | 283 | 3 | 232 | 1.58e-47 | 161 |
Find 95 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTACATATGATATT+TGG | 0.188969 | 7_3:+58205460 | None:intergenic |
| AGTGAGATTCAGAATGAATT+TGG | 0.214211 | 7_3:-58206977 | Msa1112250:CDS |
| GGTACAACTCTACCAGATTT+TGG | 0.228299 | 7_3:-58206782 | Msa1112250:CDS |
| ATCTCTCAACAAATCATATA+AGG | 0.316050 | 7_3:-58205939 | Msa1112250:intron |
| GAAGAAAACTTGACATTAGA+AGG | 0.322875 | 7_3:-58206893 | Msa1112250:CDS |
| GGCTACTACCATATGGTAAA+AGG | 0.325013 | 7_3:-58205723 | Msa1112250:three_prime_UTR |
| CTCCTTTGCATGAGCATAGA+TGG | 0.333088 | 7_3:+58206511 | None:intergenic |
| GGACCAACAGCTAGAGTAAA+AGG | 0.352405 | 7_3:+58205398 | None:intergenic |
| GAATAACGGAATTCATAGTT+TGG | 0.354381 | 7_3:+58205596 | None:intergenic |
| CAGATCTTCCTTGCGGAGCT+TGG | 0.354733 | 7_3:-58206553 | Msa1112250:CDS |
| ATCAACAGATTATCTATTCA+TGG | 0.363088 | 7_3:-58206821 | Msa1112250:CDS |
| AACTGCCAATTCCACATAAC+AGG | 0.379067 | 7_3:+58205489 | None:intergenic |
| CATCGTGTCGCGTTCATCTC+TGG | 0.381704 | 7_3:-58208202 | Msa1112250:intron |
| TGTCTCCTGCTCTGCTGATT+CGG | 0.382713 | 7_3:+58206640 | None:intergenic |
| AGCAGCAATGTCTGTTTCAC+TGG | 0.393072 | 7_3:+58206703 | None:intergenic |
| CAAAGGAGGCAAATACATTA+TGG | 0.393151 | 7_3:-58206496 | Msa1112250:CDS |
| AGAAGTGCAGGTTTGATACT+AGG | 0.393998 | 7_3:-58205634 | Msa1112250:three_prime_UTR |
| ATTATTCATTCATATGTTAC+CGG | 0.396888 | 7_3:+58208326 | None:intergenic |
| TTCATCCTTTCCACTAGGCT+TGG | 0.405829 | 7_3:+58206913 | None:intergenic |
| AAACTTGACATTAGAAGGAT+TGG | 0.407672 | 7_3:-58206888 | Msa1112250:CDS |
| ATCTTCCTTGCGGAGCTTGG+TGG | 0.419362 | 7_3:-58206550 | Msa1112250:CDS |
| TTTGACAGTGATAAATCATC+AGG | 0.420814 | 7_3:+58206608 | None:intergenic |
| CACATCTTTGAGTCGAATCA+TGG | 0.436493 | 7_3:+58205818 | None:intergenic |
| GTGTTCCTGTTATGTGGAAT+TGG | 0.445145 | 7_3:-58205494 | Msa1112250:three_prime_UTR |
| TATGTCAGAGAGGTTGAGAA+TGG | 0.449253 | 7_3:-58205672 | Msa1112250:three_prime_UTR |
| TATTGTGTGTTCCTGTTATG+TGG | 0.450636 | 7_3:-58205500 | Msa1112250:three_prime_UTR |
| AAAGAGCTTTACAACTTAAG+TGG | 0.462236 | 7_3:-58206412 | Msa1112250:CDS |
| CGGAATTCATAGTTTGGTAA+AGG | 0.463600 | 7_3:+58205602 | None:intergenic |
| TCAACTTATGCAGCTGCTCC+TGG | 0.470344 | 7_3:-58207145 | Msa1112250:CDS |
| GGATGTGTCAAAGGAGTTTG+AGG | 0.473894 | 7_3:-58206867 | Msa1112250:CDS |
| ATGTAACGTTTAAGAAGTGC+AGG | 0.475847 | 7_3:-58205646 | Msa1112250:three_prime_UTR |
| GCTTGGTCAACGCTGGCGAC+AGG | 0.477014 | 7_3:-58206435 | Msa1112250:CDS |
| AGAGATTTATGTGTCTGTAT+AGG | 0.478008 | 7_3:+58205956 | None:intergenic |
| GAAGTGACCAGACATGAATA+AGG | 0.494471 | 7_3:+58207048 | None:intergenic |
| AATATATAATGTTTGAATAA+CGG | 0.500958 | 7_3:+58205582 | None:intergenic |
| GTCTTCTCGCGGTAATGACT+GGG | 0.502839 | 7_3:-58207188 | Msa1112250:CDS |
| TTCATTGCAGCAACAGTGAT+GGG | 0.502883 | 7_3:-58206467 | Msa1112250:CDS |
| AACTCAACTTCACGTGGACC+AGG | 0.507089 | 7_3:+58207127 | None:intergenic |
| TGTTTCCACAGGCAAGGAGC+AGG | 0.508812 | 7_3:-58205851 | Msa1112250:intron |
| CTCAAAGATGTGATCGTTGG+TGG | 0.510999 | 7_3:-58205807 | Msa1112250:CDS |
| TTATGAAGACAAAAGATGGC+AGG | 0.513000 | 7_3:-58207232 | Msa1112250:intron |
| TATTCATGGAAAACAGTTTG+AGG | 0.519571 | 7_3:-58206807 | Msa1112250:CDS |
| GGAAGAGCTTTCTCTGATCA+AGG | 0.520300 | 7_3:+58205770 | None:intergenic |
| TGATCAAGGAGCCACGGCGG+TGG | 0.522980 | 7_3:+58205784 | None:intergenic |
| TTCATGCTTACTTGGTGGAA+AGG | 0.529697 | 7_3:+58207024 | None:intergenic |
| TCAAACGCCTTATTCATGTC+TGG | 0.529833 | 7_3:-58207055 | Msa1112250:CDS |
| ATGGCAGGAACTGAAGATGA+AGG | 0.531057 | 7_3:-58207217 | Msa1112250:CDS |
| TGCAGCAACAGTGATGGGTT+TGG | 0.532584 | 7_3:-58206462 | Msa1112250:CDS |
| TTTCATTGCAGCAACAGTGA+TGG | 0.533829 | 7_3:-58206468 | Msa1112250:CDS |
| AACAACCGAATCAGCAGAGC+AGG | 0.534322 | 7_3:-58206645 | Msa1112250:CDS |
| TAAGCATGAAAACTTGCCAT+TGG | 0.534678 | 7_3:-58207011 | Msa1112250:CDS |
| AGAAGGATTGGATGTGTCAA+AGG | 0.536048 | 7_3:-58206876 | Msa1112250:CDS |
| ATCAGCAGAGCAGGAGACAA+AGG | 0.541008 | 7_3:-58206636 | Msa1112250:CDS |
| CAAAGATATCGCCTCTGTAG+AGG | 0.545508 | 7_3:-58206951 | Msa1112250:CDS |
| TGAAGGTGGCTACTACCATA+TGG | 0.546356 | 7_3:-58205730 | Msa1112250:three_prime_UTR |
| ATGTCAGAGAGGTTGAGAAT+GGG | 0.554482 | 7_3:-58205671 | Msa1112250:three_prime_UTR |
| GCTCCGCAAGGAAGATCTGA+AGG | 0.560737 | 7_3:+58206557 | None:intergenic |
| GTGATGGGTTTGGTGATGCT+TGG | 0.561745 | 7_3:-58206452 | Msa1112250:CDS |
| TCCACGTGAAGTTGAGTTGA+AGG | 0.562439 | 7_3:-58207122 | Msa1112250:CDS |
| TGGTGATGCTTGGTCAACGC+TGG | 0.565434 | 7_3:-58206442 | Msa1112250:CDS |
| CATGGAAAACAGTTTGAGGA+AGG | 0.566354 | 7_3:-58206803 | Msa1112250:CDS |
| TTATGTGTCTGTATAGGATG+AGG | 0.566846 | 7_3:+58205962 | None:intergenic |
| ACATCTTTGAGTCGAATCAT+GGG | 0.569536 | 7_3:+58205819 | None:intergenic |
| CGACTCAAAGATGTGATCGT+TGG | 0.574960 | 7_3:-58205810 | Msa1112250:CDS |
| CATCTATGCTCATGCAAAGG+AGG | 0.578296 | 7_3:-58206510 | Msa1112250:CDS |
| TGGCAGGAACTGAAGATGAA+GGG | 0.579156 | 7_3:-58207216 | Msa1112250:CDS |
| GAAATTTAACTCGGTGAAGG+TGG | 0.579228 | 7_3:-58205744 | Msa1112250:exon |
| GCAGCAATGTCTGTTTCACT+GGG | 0.581872 | 7_3:+58206704 | None:intergenic |
| CTCTTCCACCAAGCTCCGCA+AGG | 0.582885 | 7_3:+58206545 | None:intergenic |
| TGCGGAGCTTGGTGGAAGAG+AGG | 0.593596 | 7_3:-58206542 | Msa1112250:CDS |
| TGAGTTGAAGGATGATGACA+AGG | 0.594626 | 7_3:-58207110 | Msa1112250:CDS |
| AGCGACCAAGCCTAGTGGAA+AGG | 0.597200 | 7_3:-58206918 | Msa1112250:CDS |
| GGCAGGAACTGAAGATGAAG+GGG | 0.599526 | 7_3:-58207215 | Msa1112250:CDS |
| CTCCATCTATGCTCATGCAA+AGG | 0.601745 | 7_3:-58206513 | Msa1112250:CDS |
| GCTGAAATTTAACTCGGTGA+AGG | 0.601929 | 7_3:-58205747 | Msa1112250:exon |
| TCCTTCAACTCAACTTCACG+TGG | 0.602249 | 7_3:+58207121 | None:intergenic |
| GCAAGTCAGTATTTCTGATG+AGG | 0.612309 | 7_3:-58206390 | Msa1112250:intron |
| TCACTATAGTCAGTTTCCAA+TGG | 0.627762 | 7_3:+58206995 | None:intergenic |
| TCTTCCGCTGAAATTTAACT+CGG | 0.629458 | 7_3:-58205753 | Msa1112250:exon |
| AACCCTTCAGATCTTCCTTG+CGG | 0.630132 | 7_3:-58206560 | Msa1112250:CDS |
| ATGTATTATGTATTTCGATG+AGG | 0.632736 | 7_3:+58208254 | None:intergenic |
| CGAAAAGTTGTATGTCAGAG+AGG | 0.635492 | 7_3:-58205682 | Msa1112250:three_prime_UTR |
| GAAGAAGCGACCAAGCCTAG+TGG | 0.639637 | 7_3:-58206923 | Msa1112250:CDS |
| ATCGTTGGTGGCCACCGCCG+TGG | 0.649963 | 7_3:-58205795 | Msa1112250:CDS |
| ACGCGACACGATGTTCGTAG+TGG | 0.655563 | 7_3:+58208212 | None:intergenic |
| CTCTGATCAAGGAGCCACGG+CGG | 0.656435 | 7_3:+58205781 | None:intergenic |
| TTCTCGCGGTAATGACTGGG+AGG | 0.656632 | 7_3:-58207185 | Msa1112250:CDS |
| TTTCTCTGATCAAGGAGCCA+CGG | 0.661567 | 7_3:+58205778 | None:intergenic |
| TTCACCGAGTTAAATTTCAG+CGG | 0.667738 | 7_3:+58205749 | None:intergenic |
| CTCCGCAAGGAAGATCTGAA+GGG | 0.679694 | 7_3:+58206558 | None:intergenic |
| GAAGGGGAAAAGTCTTCTCG+CGG | 0.683817 | 7_3:-58207199 | Msa1112250:CDS |
| TTGAAGGATGATGACAAGGA+AGG | 0.695939 | 7_3:-58207106 | Msa1112250:CDS |
| CTTTGCATGAGCATAGATGG+AGG | 0.704751 | 7_3:+58206514 | None:intergenic |
| TTCTTCACGAGCCTCTACAG+AGG | 0.708502 | 7_3:+58206940 | None:intergenic |
| CAGCAATGTCTGTTTCACTG+GGG | 0.782536 | 7_3:+58206705 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTTATTTTAATTTAATATT+AGG | - | chr7_3:58205888-58205907 | Msa1112250:intron | 10.0% |
| !! | AATATATAATGTTTGAATAA+CGG | + | chr7_3:58208141-58208160 | None:intergenic | 10.0% |
| !!! | CTGTTGTTTTTATATTATTA+TGG | + | chr7_3:58205435-58205454 | None:intergenic | 15.0% |
| !! | TATTTATATTCATTCTTCTA+AGG | - | chr7_3:58207355-58207374 | Msa1112250:intron | 15.0% |
| !! | CTTAATTTACATATGATATT+TGG | + | chr7_3:58208263-58208282 | None:intergenic | 15.0% |
| !!! | TAACTATTTGCATGAAATTT+TGG | - | chr7_3:58205949-58205968 | Msa1112250:CDS | 20.0% |
| !! | AAACAAATACAATTATGCAA+GGG | + | chr7_3:58206394-58206413 | None:intergenic | 20.0% |
| !! | AAAACAAATACAATTATGCA+AGG | + | chr7_3:58206395-58206414 | None:intergenic | 20.0% |
| !!! | TTTTTTATGAAGACAAAAGA+TGG | - | chr7_3:58206484-58206503 | Msa1112250:CDS | 20.0% |
| !! | TATAATGTTATGCATAAAGA+TGG | - | chr7_3:58207487-58207506 | Msa1112250:intron | 20.0% |
| !!! | TACTTTAAAAATGAAGGTTA+TGG | - | chr7_3:58207667-58207686 | Msa1112250:intron | 20.0% |
| !!! | ACTTTAAAAATGAAGGTTAT+GGG | - | chr7_3:58207668-58207687 | Msa1112250:intron | 20.0% |
| !!! | GCAATGTAATATTTATTTTG+TGG | - | chr7_3:58207701-58207720 | Msa1112250:intron | 20.0% |
| ! | ATGTATTATGTATTTCGATG+AGG | + | chr7_3:58205469-58205488 | None:intergenic | 25.0% |
| !! | TTGTTTATTTGTGCTGTTAT+TGG | - | chr7_3:58205683-58205702 | Msa1112250:three_prime_UTR | 25.0% |
| !!! | GGTTATTTTAGTTTTTTCAG+TGG | - | chr7_3:58205970-58205989 | Msa1112250:CDS | 25.0% |
| ! | TACAAGAAAACTACTACTTT+CGG | + | chr7_3:58206316-58206335 | None:intergenic | 25.0% |
| ! | ATCAACAGATTATCTATTCA+TGG | - | chr7_3:58206899-58206918 | Msa1112250:CDS | 25.0% |
| ! | TATGCATAACATTATAAACG+AGG | + | chr7_3:58207483-58207502 | None:intergenic | 25.0% |
| !! | ATTTTTACTAGCACATCATA+AGG | - | chr7_3:58207570-58207589 | Msa1112250:intron | 25.0% |
| !! | TACTCGTACTTTAAAAATGA+AGG | - | chr7_3:58207661-58207680 | Msa1112250:intron | 25.0% |
| ! | ATCTCTCAACAAATCATATA+AGG | - | chr7_3:58207781-58207800 | Msa1112250:intron | 25.0% |
| !! | GTGTTGTTATTTGAATTCAG+TGG | - | chr7_3:58205763-58205782 | Msa1112250:CDS | 30.0% |
| ! | GTTGATGTGAATTTTGTGAT+TGG | - | chr7_3:58205829-58205848 | Msa1112250:CDS | 30.0% |
| ! | ATGTGAATTTTGTGATTGGT+TGG | - | chr7_3:58205833-58205852 | Msa1112250:CDS | 30.0% |
| ! | TAGGTCATGTTTTCACTTAT+AGG | - | chr7_3:58205867-58205886 | Msa1112250:intron | 30.0% |
| CAAATAGTTAGATCAATCTC+TGG | + | chr7_3:58205939-58205958 | None:intergenic | 30.0% | |
| AGTATAACCTTGTAATATCC+CGG | - | chr7_3:58205997-58206016 | Msa1112250:intron | 30.0% | |
| ! | TCTGCGATTACGATTTTTAA+GGG | + | chr7_3:58206096-58206115 | None:intergenic | 30.0% |
| ! | TTCTGCGATTACGATTTTTA+AGG | + | chr7_3:58206097-58206116 | None:intergenic | 30.0% |
| AGTGAGATTCAGAATGAATT+TGG | - | chr7_3:58206743-58206762 | Msa1112250:CDS | 30.0% | |
| GAAGAAAACTTGACATTAGA+AGG | - | chr7_3:58206827-58206846 | Msa1112250:CDS | 30.0% | |
| AAACTTGACATTAGAAGGAT+TGG | - | chr7_3:58206832-58206851 | Msa1112250:CDS | 30.0% | |
| TATTCATGGAAAACAGTTTG+AGG | - | chr7_3:58206913-58206932 | Msa1112250:CDS | 30.0% | |
| ! | TTTTCAGTCAAACCAAAATC+TGG | + | chr7_3:58206953-58206972 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTGACTGAAAAAG+AGG | - | chr7_3:58206955-58206974 | Msa1112250:CDS | 30.0% |
| ! | GGAAAGAATTGTATTTTGCA+GGG | + | chr7_3:58206997-58207016 | None:intergenic | 30.0% |
| TTTGACAGTGATAAATCATC+AGG | + | chr7_3:58207115-58207134 | None:intergenic | 30.0% | |
| AAAGAGCTTTACAACTTAAG+TGG | - | chr7_3:58207308-58207327 | Msa1112250:intron | 30.0% | |
| !! | GGTTGATAGTGTCAATTATT+TGG | - | chr7_3:58207508-58207527 | Msa1112250:intron | 30.0% |
| AGAGATTTATGTGTCTGTAT+AGG | + | chr7_3:58207767-58207786 | None:intergenic | 30.0% | |
| !! | AGTTTTAGCCTTTTACCATA+TGG | + | chr7_3:58208008-58208027 | None:intergenic | 30.0% |
| ! | GAATAACGGAATTCATAGTT+TGG | + | chr7_3:58208127-58208146 | None:intergenic | 30.0% |
| !! | TAATGAAGTGAGTGTTTTGA+TGG | - | chr7_3:58208284-58208303 | Msa1112250:five_prime_UTR | 30.0% |
| TTGGTTGGAGTGAAAGAAAT+AGG | - | chr7_3:58205848-58205867 | Msa1112250:intron | 35.0% | |
| ! | TTAGGGGCATGAAAATTTAG+AGG | - | chr7_3:58205906-58205925 | Msa1112250:intron | 35.0% |
| GTATAACCTTGTAATATCCC+GGG | - | chr7_3:58205998-58206017 | Msa1112250:intron | 35.0% | |
| TTCTACAAACATTTCCAGGA+GGG | + | chr7_3:58206035-58206054 | None:intergenic | 35.0% | |
| ATTCTACAAACATTTCCAGG+AGG | + | chr7_3:58206036-58206055 | None:intergenic | 35.0% | |
| TCCTGGAAATGTTTGTAGAA+TGG | - | chr7_3:58206035-58206054 | Msa1112250:intron | 35.0% | |
| ACCATTCTACAAACATTTCC+AGG | + | chr7_3:58206039-58206058 | None:intergenic | 35.0% | |
| ATTCCTTGTGTAAATAGGCA+CGG | + | chr7_3:58206189-58206208 | None:intergenic | 35.0% | |
| GAGTCATTCCTTGTGTAAAT+AGG | + | chr7_3:58206194-58206213 | None:intergenic | 35.0% | |
| AACTACTACTTTCGGAAGAA+AGG | + | chr7_3:58206308-58206327 | None:intergenic | 35.0% | |
| TTATGAAGACAAAAGATGGC+AGG | - | chr7_3:58206488-58206507 | Msa1112250:CDS | 35.0% | |
| ! | AAGTTTTCATGCTTACTTGG+TGG | + | chr7_3:58206704-58206723 | None:intergenic | 35.0% |
| TAAGCATGAAAACTTGCCAT+TGG | - | chr7_3:58206709-58206728 | Msa1112250:CDS | 35.0% | |
| TCACTATAGTCAGTTTCCAA+TGG | + | chr7_3:58206728-58206747 | None:intergenic | 35.0% | |
| ! | TTTTCTTCATCCTTTCCACT+AGG | + | chr7_3:58206815-58206834 | None:intergenic | 35.0% |
| ! | GGGAAAGAATTGTATTTTGC+AGG | + | chr7_3:58206998-58207017 | None:intergenic | 35.0% |
| !!! | AGGGTTTTGTTTGTCATCTT+TGG | + | chr7_3:58207146-58207165 | None:intergenic | 35.0% |
| CAAAGGAGGCAAATACATTA+TGG | - | chr7_3:58207224-58207243 | Msa1112250:exon | 35.0% | |
| !! | ATGAGTTTGTTGTACACAAC+TGG | + | chr7_3:58207552-58207571 | None:intergenic | 35.0% |
| TTATGTGTCTGTATAGGATG+AGG | + | chr7_3:58207761-58207780 | None:intergenic | 35.0% | |
| ACATCTTTGAGTCGAATCAT+GGG | + | chr7_3:58207904-58207923 | None:intergenic | 35.0% | |
| TCTTCCGCTGAAATTTAACT+CGG | - | chr7_3:58207967-58207986 | Msa1112250:intron | 35.0% | |
| TTCACCGAGTTAAATTTCAG+CGG | + | chr7_3:58207974-58207993 | None:intergenic | 35.0% | |
| ! | ATGTAACGTTTAAGAAGTGC+AGG | - | chr7_3:58208074-58208093 | Msa1112250:intron | 35.0% |
| CGGAATTCATAGTTTGGTAA+AGG | + | chr7_3:58208121-58208140 | None:intergenic | 35.0% | |
| TATTGTGTGTTCCTGTTATG+TGG | - | chr7_3:58208220-58208239 | Msa1112250:five_prime_UTR | 35.0% | |
| ! | TTTCCTTTTACTCTAGCTGT+TGG | - | chr7_3:58208319-58208338 | Msa1112250:five_prime_UTR | 35.0% |
| GCTGTTATTGGATCTTTCTG+TGG | - | chr7_3:58205695-58205714 | Msa1112250:three_prime_UTR | 40.0% | |
| CAATTATGCAAGGGAGAGTA+GGG | + | chr7_3:58206385-58206404 | None:intergenic | 40.0% | |
| ACAATTATGCAAGGGAGAGT+AGG | + | chr7_3:58206386-58206405 | None:intergenic | 40.0% | |
| ! | TGAGTTGAAGGATGATGACA+AGG | - | chr7_3:58206610-58206629 | Msa1112250:CDS | 40.0% |
| TTGAAGGATGATGACAAGGA+AGG | - | chr7_3:58206614-58206633 | Msa1112250:CDS | 40.0% | |
| ! | TCAAACGCCTTATTCATGTC+TGG | - | chr7_3:58206665-58206684 | Msa1112250:CDS | 40.0% |
| GAAGTGACCAGACATGAATA+AGG | + | chr7_3:58206675-58206694 | None:intergenic | 40.0% | |
| ! | TTCATGCTTACTTGGTGGAA+AGG | + | chr7_3:58206699-58206718 | None:intergenic | 40.0% |
| ! | GGCAAGTTTTCATGCTTACT+TGG | + | chr7_3:58206707-58206726 | None:intergenic | 40.0% |
| AGAAGGATTGGATGTGTCAA+AGG | - | chr7_3:58206844-58206863 | Msa1112250:CDS | 40.0% | |
| CATGGAAAACAGTTTGAGGA+AGG | - | chr7_3:58206917-58206936 | Msa1112250:CDS | 40.0% | |
| ! | GGTACAACTCTACCAGATTT+TGG | - | chr7_3:58206938-58206957 | Msa1112250:CDS | 40.0% |
| TTTCATTGCAGCAACAGTGA+TGG | - | chr7_3:58207252-58207271 | Msa1112250:intron | 40.0% | |
| TTCATTGCAGCAACAGTGAT+GGG | - | chr7_3:58207253-58207272 | Msa1112250:intron | 40.0% | |
| ! | GCAAGTCAGTATTTCTGATG+AGG | - | chr7_3:58207330-58207349 | Msa1112250:intron | 40.0% |
| CCTGTGGAAACAATCACTAT+TGG | + | chr7_3:58207861-58207880 | None:intergenic | 40.0% | |
| CCAATAGTGATTGTTTCCAC+AGG | - | chr7_3:58207858-58207877 | Msa1112250:intron | 40.0% | |
| CACATCTTTGAGTCGAATCA+TGG | + | chr7_3:58207905-58207924 | None:intergenic | 40.0% | |
| ! | GCTGAAATTTAACTCGGTGA+AGG | - | chr7_3:58207973-58207992 | Msa1112250:intron | 40.0% |
| ! | GAAATTTAACTCGGTGAAGG+TGG | - | chr7_3:58207976-58207995 | Msa1112250:intron | 40.0% |
| GGCTACTACCATATGGTAAA+AGG | - | chr7_3:58207997-58208016 | Msa1112250:intron | 40.0% | |
| CGAAAAGTTGTATGTCAGAG+AGG | - | chr7_3:58208038-58208057 | Msa1112250:intron | 40.0% | |
| TATGTCAGAGAGGTTGAGAA+TGG | - | chr7_3:58208048-58208067 | Msa1112250:intron | 40.0% | |
| ATGTCAGAGAGGTTGAGAAT+GGG | - | chr7_3:58208049-58208068 | Msa1112250:intron | 40.0% | |
| ! | AGAAGTGCAGGTTTGATACT+AGG | - | chr7_3:58208086-58208105 | Msa1112250:intron | 40.0% |
| GTGTTCCTGTTATGTGGAAT+TGG | - | chr7_3:58208226-58208245 | Msa1112250:five_prime_UTR | 40.0% | |
| AACTGCCAATTCCACATAAC+AGG | + | chr7_3:58208234-58208253 | None:intergenic | 40.0% | |
| !!! | TGAAGTGAGTGTTTTGATGG+CGG | - | chr7_3:58208287-58208306 | Msa1112250:five_prime_UTR | 40.0% |
| TAACCTTGTAATATCCCGGG+CGG | - | chr7_3:58206001-58206020 | Msa1112250:intron | 45.0% | |
| TCACCGTGCCTATTTACACA+AGG | - | chr7_3:58206183-58206202 | Msa1112250:intron | 45.0% | |
| GAGTAGGGCTCGACAAAAAA+AGG | + | chr7_3:58206370-58206389 | None:intergenic | 45.0% | |
| ATGGCAGGAACTGAAGATGA+AGG | - | chr7_3:58206503-58206522 | Msa1112250:CDS | 45.0% | |
| TGGCAGGAACTGAAGATGAA+GGG | - | chr7_3:58206504-58206523 | Msa1112250:CDS | 45.0% | |
| !! | TCCACGTGAAGTTGAGTTGA+AGG | - | chr7_3:58206598-58206617 | Msa1112250:CDS | 45.0% |
| TCCTTCAACTCAACTTCACG+TGG | + | chr7_3:58206602-58206621 | None:intergenic | 45.0% | |
| CAAAGATATCGCCTCTGTAG+AGG | - | chr7_3:58206769-58206788 | Msa1112250:CDS | 45.0% | |
| TTCATCCTTTCCACTAGGCT+TGG | + | chr7_3:58206810-58206829 | None:intergenic | 45.0% | |
| GGATGTGTCAAAGGAGTTTG+AGG | - | chr7_3:58206853-58206872 | Msa1112250:CDS | 45.0% | |
| CAGCAATGTCTGTTTCACTG+GGG | + | chr7_3:58207018-58207037 | None:intergenic | 45.0% | |
| GCAGCAATGTCTGTTTCACT+GGG | + | chr7_3:58207019-58207038 | None:intergenic | 45.0% | |
| AGCAGCAATGTCTGTTTCAC+TGG | + | chr7_3:58207020-58207039 | None:intergenic | 45.0% | |
| AACCCTTCAGATCTTCCTTG+CGG | - | chr7_3:58207160-58207179 | Msa1112250:CDS | 45.0% | |
| CTTTGCATGAGCATAGATGG+AGG | + | chr7_3:58207209-58207228 | None:intergenic | 45.0% | |
| CTCCATCTATGCTCATGCAA+AGG | - | chr7_3:58207207-58207226 | Msa1112250:CDS | 45.0% | |
| CTCCTTTGCATGAGCATAGA+TGG | + | chr7_3:58207212-58207231 | None:intergenic | 45.0% | |
| CATCTATGCTCATGCAAAGG+AGG | - | chr7_3:58207210-58207229 | Msa1112250:CDS | 45.0% | |
| AGTGATTGTTTCCACAGGCA+AGG | - | chr7_3:58207863-58207882 | Msa1112250:intron | 45.0% | |
| CGACTCAAAGATGTGATCGT+TGG | - | chr7_3:58207910-58207929 | Msa1112250:intron | 45.0% | |
| CTCAAAGATGTGATCGTTGG+TGG | - | chr7_3:58207913-58207932 | Msa1112250:intron | 45.0% | |
| TTTCTCTGATCAAGGAGCCA+CGG | + | chr7_3:58207945-58207964 | None:intergenic | 45.0% | |
| GGAAGAGCTTTCTCTGATCA+AGG | + | chr7_3:58207953-58207972 | None:intergenic | 45.0% | |
| TGAAGGTGGCTACTACCATA+TGG | - | chr7_3:58207990-58208009 | Msa1112250:intron | 45.0% | |
| !!! | GAAGTGAGTGTTTTGATGGC+GGG | - | chr7_3:58208288-58208307 | Msa1112250:five_prime_UTR | 45.0% |
| GGACCAACAGCTAGAGTAAA+AGG | + | chr7_3:58208325-58208344 | None:intergenic | 45.0% | |
| !!! | GTTATTTTAATTTAATATTA+GGG | - | chr7_3:58205889-58205908 | Msa1112250:intron | 5.0% |
| !!! | TTATTTTAATTTAATATTAG+GGG | - | chr7_3:58205890-58205909 | Msa1112250:intron | 5.0% |
| AATCCGCCCGGGATATTACA+AGG | + | chr7_3:58206007-58206026 | None:intergenic | 50.0% | |
| ! | AGGAGGGTTTAAAATCCGCC+CGG | + | chr7_3:58206019-58206038 | None:intergenic | 50.0% |
| ACAAGCATGTGCAGGGTCAT+TGG | + | chr7_3:58206261-58206280 | None:intergenic | 50.0% | |
| ACAGCTCACAAGCATGTGCA+GGG | + | chr7_3:58206268-58206287 | None:intergenic | 50.0% | |
| GGCAGGAACTGAAGATGAAG+GGG | - | chr7_3:58206505-58206524 | Msa1112250:CDS | 50.0% | |
| GAAGGGGAAAAGTCTTCTCG+CGG | - | chr7_3:58206521-58206540 | Msa1112250:CDS | 50.0% | |
| AGTCTTCTCGCGGTAATGAC+TGG | - | chr7_3:58206531-58206550 | Msa1112250:CDS | 50.0% | |
| GTCTTCTCGCGGTAATGACT+GGG | - | chr7_3:58206532-58206551 | Msa1112250:CDS | 50.0% | |
| TCAACTTATGCAGCTGCTCC+TGG | - | chr7_3:58206575-58206594 | Msa1112250:CDS | 50.0% | |
| AACTCAACTTCACGTGGACC+AGG | + | chr7_3:58206596-58206615 | None:intergenic | 50.0% | |
| TTCTTCACGAGCCTCTACAG+AGG | + | chr7_3:58206783-58206802 | None:intergenic | 50.0% | |
| AACAACCGAATCAGCAGAGC+AGG | - | chr7_3:58207075-58207094 | Msa1112250:CDS | 50.0% | |
| ! | TGTCTCCTGCTCTGCTGATT+CGG | + | chr7_3:58207083-58207102 | None:intergenic | 50.0% |
| ATCAGCAGAGCAGGAGACAA+AGG | - | chr7_3:58207084-58207103 | Msa1112250:CDS | 50.0% | |
| CTCCGCAAGGAAGATCTGAA+GGG | + | chr7_3:58207165-58207184 | None:intergenic | 50.0% | |
| !! | TGCAGCAACAGTGATGGGTT+TGG | - | chr7_3:58207258-58207277 | Msa1112250:intron | 50.0% |
| !! | GTGATGGGTTTGGTGATGCT+TGG | - | chr7_3:58207268-58207287 | Msa1112250:intron | 50.0% |
| CGCGACACGATGTTCGTAGT+GGG | + | chr7_3:58205510-58205529 | None:intergenic | 55.0% | |
| ACGCGACACGATGTTCGTAG+TGG | + | chr7_3:58205511-58205530 | None:intergenic | 55.0% | |
| CATCGTGTCGCGTTCATCTC+TGG | - | chr7_3:58205518-58205537 | Msa1112250:three_prime_UTR | 55.0% | |
| ! | GGAGGGTTTAAAATCCGCCC+GGG | + | chr7_3:58206018-58206037 | None:intergenic | 55.0% |
| !! | GGGCGGATTTTAAACCCTCC+TGG | - | chr7_3:58206018-58206037 | Msa1112250:intron | 55.0% |
| CACAGCTCACAAGCATGTGC+AGG | + | chr7_3:58206269-58206288 | None:intergenic | 55.0% | |
| TTCTCGCGGTAATGACTGGG+AGG | - | chr7_3:58206535-58206554 | Msa1112250:CDS | 55.0% | |
| GAAGAAGCGACCAAGCCTAG+TGG | - | chr7_3:58206797-58206816 | Msa1112250:CDS | 55.0% | |
| AGCGACCAAGCCTAGTGGAA+AGG | - | chr7_3:58206802-58206821 | Msa1112250:CDS | 55.0% | |
| GCTCCGCAAGGAAGATCTGA+AGG | + | chr7_3:58207166-58207185 | None:intergenic | 55.0% | |
| CAGATCTTCCTTGCGGAGCT+TGG | - | chr7_3:58207167-58207186 | Msa1112250:CDS | 55.0% | |
| ATCTTCCTTGCGGAGCTTGG+TGG | - | chr7_3:58207170-58207189 | Msa1112250:CDS | 55.0% | |
| ! | TGGTGATGCTTGGTCAACGC+TGG | - | chr7_3:58207278-58207297 | Msa1112250:intron | 55.0% |
| TGTTTCCACAGGCAAGGAGC+AGG | - | chr7_3:58207869-58207888 | Msa1112250:intron | 55.0% | |
| CTCTTCCACCAAGCTCCGCA+AGG | + | chr7_3:58207178-58207197 | None:intergenic | 60.0% | |
| ! | TGCGGAGCTTGGTGGAAGAG+AGG | - | chr7_3:58207178-58207197 | Msa1112250:CDS | 60.0% |
| AGCATCCTGCTCCTTGCCTG+TGG | + | chr7_3:58207877-58207896 | None:intergenic | 60.0% | |
| CTCTGATCAAGGAGCCACGG+CGG | + | chr7_3:58207942-58207961 | None:intergenic | 60.0% | |
| GCTTGGTCAACGCTGGCGAC+AGG | - | chr7_3:58207285-58207304 | Msa1112250:intron | 65.0% | |
| TGATCAAGGAGCCACGGCGG+TGG | + | chr7_3:58207939-58207958 | None:intergenic | 65.0% | |
| !! | ATCGTTGGTGGCCACCGCCG+TGG | - | chr7_3:58207925-58207944 | Msa1112250:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 58205397 | 58208345 | 58205397 | ID=Msa1112250;Name=Msa1112250 |
| chr7_3 | mRNA | 58205397 | 58208345 | 58205397 | ID=Msa1112250-mRNA-1;Parent=Msa1112250;Name=Msa1112250-mRNA-1;_AED=0.05;_eAED=0.05;_QI=150|0.33|0.75|0.75|0.66|0.5|4|361|338 |
| chr7_3 | exon | 58205397 | 58205862 | 58205397 | ID=Msa1112250-mRNA-1:exon:12738;Parent=Msa1112250-mRNA-1 |
| chr7_3 | exon | 58205940 | 58206002 | 58205940 | ID=Msa1112250-mRNA-1:exon:12737;Parent=Msa1112250-mRNA-1 |
| chr7_3 | exon | 58206391 | 58207246 | 58206391 | ID=Msa1112250-mRNA-1:exon:12736;Parent=Msa1112250-mRNA-1 |
| chr7_3 | exon | 58208203 | 58208345 | 58208203 | ID=Msa1112250-mRNA-1:exon:12735;Parent=Msa1112250-mRNA-1 |
| chr7_3 | five_prime_UTR | 58208203 | 58208345 | 58208203 | ID=Msa1112250-mRNA-1:five_prime_utr;Parent=Msa1112250-mRNA-1 |
| chr7_3 | five_prime_UTR | 58207240 | 58207246 | 58207240 | ID=Msa1112250-mRNA-1:five_prime_utr;Parent=Msa1112250-mRNA-1 |
| chr7_3 | CDS | 58206391 | 58207239 | 58206391 | ID=Msa1112250-mRNA-1:cds;Parent=Msa1112250-mRNA-1 |
| chr7_3 | CDS | 58205940 | 58206002 | 58205940 | ID=Msa1112250-mRNA-1:cds;Parent=Msa1112250-mRNA-1 |
| chr7_3 | CDS | 58205758 | 58205862 | 58205758 | ID=Msa1112250-mRNA-1:cds;Parent=Msa1112250-mRNA-1 |
| chr7_3 | three_prime_UTR | 58205397 | 58205757 | 58205397 | ID=Msa1112250-mRNA-1:three_prime_utr;Parent=Msa1112250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
