AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047460 MtrunA17_Chr6g0450811 98.158 380 7 0 1 380 1 380 0.0 775
Msa0047460 MtrunA17_Chr6g0450811 93.220 354 24 0 376 729 33 386 0.0 698
Msa0047460 MtrunA17_Chr6g0450821 93.220 354 5 1 376 729 3 337 0.0 673
Msa0047460 MtrunA17_Chr6g0450821 84.571 350 35 1 31 380 1 331 0.0 612
Msa0047460 MtrunA17_Chr4g0000511 30.081 246 168 3 122 367 152 393 6.94e-26 113
Msa0047460 MtrunA17_Chr4g0000511 28.455 246 172 3 465 710 152 393 3.56e-24 107
Msa0047460 MtrunA17_Chr1g0208141 31.600 250 159 5 122 367 119 360 5.36e-24 107
Msa0047460 MtrunA17_Chr1g0208141 29.719 249 165 4 465 710 119 360 2.29e-22 102
Msa0047460 MtrunA17_Chr4g0004711 27.799 259 172 4 113 367 59 306 1.59e-23 102
Msa0047460 MtrunA17_Chr4g0004711 27.799 259 170 5 457 710 60 306 4.31e-23 100
Msa0047460 MtrunA17_Chr3g0077771 30.421 309 176 11 417 703 75 366 1.74e-22 100
Msa0047460 MtrunA17_Chr3g0077771 30.075 266 154 7 116 360 112 366 6.09e-22 98.6
Msa0047460 MtrunA17_Chr4g0004721 25.979 281 191 5 91 367 40 307 6.47e-21 94.4
Msa0047460 MtrunA17_Chr4g0004721 25.267 281 193 5 434 710 40 307 1.32e-20 93.6
Msa0047460 MtrunA17_Chr8g0351111 27.413 259 173 5 454 707 65 313 9.40e-21 94.0
Msa0047460 MtrunA17_Chr8g0351111 26.641 259 175 4 111 364 65 313 2.95e-20 92.8
Msa0047460 MtrunA17_Chr4g0004681 26.953 256 175 4 113 367 59 303 4.53e-20 91.7
Msa0047460 MtrunA17_Chr4g0004681 26.275 255 176 4 457 710 60 303 2.70e-19 89.4
Msa0047460 MtrunA17_Chr8g0351121 26.054 261 169 7 111 364 102 345 3.06e-17 84.0
Msa0047460 MtrunA17_Chr8g0351121 28.400 250 155 8 465 707 113 345 9.01e-17 82.8
Msa0047460 MtrunA17_Chr8g0351141 23.492 315 199 9 76 384 44 322 1.48e-16 81.6
Msa0047460 MtrunA17_Chr8g0351141 25.517 290 179 9 438 707 40 312 2.74e-16 80.9
Msa0047460 MtrunA17_Chr2g0331641 26.848 257 178 6 113 367 59 307 1.07e-14 75.9
Msa0047460 MtrunA17_Chr2g0331641 26.772 254 176 6 459 710 62 307 3.07e-14 74.3
Msa0047460 MtrunA17_Chr4g0004741 29.644 253 169 5 116 367 62 306 3.67e-13 71.2
Msa0047460 MtrunA17_Chr4g0004741 29.528 254 168 6 459 710 62 306 6.78e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047460 AT5G14780.2 83.898 354 57 0 376 729 17 370 0.0 600
Msa0047460 AT5G14780.2 82.471 348 61 0 33 380 17 364 0.0 583
Msa0047460 AT5G14780.1 83.898 354 57 0 376 729 31 384 0.0 599
Msa0047460 AT5G14780.1 78.478 381 78 2 1 380 1 378 0.0 587
Msa0047460 AT5G14780.3 83.898 354 57 0 376 729 5 358 0.0 598
Msa0047460 AT5G14780.3 82.471 348 61 0 33 380 5 352 0.0 582
Msa0047460 AT1G17745.1 29.286 280 189 6 90 367 115 387 4.48e-26 114
Msa0047460 AT1G17745.1 29.070 258 178 4 454 710 134 387 8.91e-25 110
Msa0047460 AT4G34200.1 30.769 247 165 4 122 367 125 366 1.09e-24 109
Msa0047460 AT4G34200.1 28.862 246 171 3 465 710 125 366 5.79e-23 104
Msa0047460 AT1G72190.1 30.932 236 154 3 116 345 110 342 2.73e-23 102
Msa0047460 AT1G72190.1 27.817 284 189 6 411 688 69 342 9.03e-23 101
Msa0047460 AT1G17745.2 27.778 306 187 8 90 367 115 414 3.58e-23 105
Msa0047460 AT1G17745.2 27.465 284 176 6 454 710 134 414 6.93e-22 101
Msa0047460 AT3G19480.1 29.150 247 169 4 122 367 110 351 8.55e-23 103
Msa0047460 AT3G19480.1 27.642 246 174 3 465 710 110 351 1.96e-21 99.8
Msa0047460 AT1G79870.1 28.295 258 176 5 113 369 59 308 5.66e-21 95.1
Msa0047460 AT1G79870.1 27.843 255 175 5 459 712 62 308 2.20e-20 93.2
Msa0047460 AT1G12550.1 25.564 266 188 5 81 345 36 292 1.55e-19 90.9
Msa0047460 AT1G12550.1 25.106 235 170 2 454 688 64 292 1.61e-19 90.9
Msa0047460 AT2G45630.2 28.750 240 164 4 452 690 78 311 6.98e-19 89.4
Msa0047460 AT2G45630.2 27.500 240 167 3 109 347 78 311 7.31e-19 89.0
Msa0047460 AT1G79870.2 25.969 258 163 5 113 369 59 289 2.68e-15 77.8
Msa0047460 AT1G79870.2 25.490 255 162 5 459 712 62 289 9.91e-15 75.9

Find 193 sgRNAs with CRISPR-Local

Find 484 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACACATCCAACAAAAT+TGG 0.150781 1_1:-80340404 None:intergenic
TTCAACACATCCAACAAAAT+TGG 0.168585 1_1:-80344937 None:intergenic
TATGCTTGAGAGGCACTTTA+AGG 0.176399 1_1:+80342350 Msa0047460:CDS
TATGCTTGAGAGGCACTTTA+AGG 0.176399 1_1:+80346814 Msa0047460:CDS
AATATATGTAAAATTCTTAT+TGG 0.179143 1_1:-80338217 None:intergenic
ATATAAAAGGTTACAGTTAA+AGG 0.184451 1_1:-80345519 None:intergenic
CCAATTTCTTTCTCCAATTC+AGG 0.191495 1_1:-80345563 None:intergenic
CCAATTTCTTTCTCCAATTC+AGG 0.196911 1_1:-80341125 None:intergenic
CAATGCTCGTGGGGCGATTA+TGG 0.210159 1_1:+80345851 Msa0047460:CDS
ATATAAAAGGTTACAGTTAA+AGG 0.223160 1_1:-80341081 None:intergenic
GCTATGACTCCTCATATTTC+TGG 0.232371 1_1:+80341707 Msa0047460:CDS
GCGATGACTCCTCATATTTC+TGG 0.233071 1_1:+80346150 Msa0047460:CDS
CAATGCTCGTGGAGCACTTA+TGG 0.246792 1_1:+80341477 Msa0047460:CDS
TAAATTATACCTTGTCTTAT+CGG 0.247196 1_1:-80345657 None:intergenic
CTCAATGCTGCGGCTGCTGC+TGG 0.282556 1_1:+80340831 Msa0047460:CDS
CTCAACGCTGCGGCTGCTGC+TGG 0.289747 1_1:+80345269 Msa0047460:CDS
TAGCGCCATGGATGATCTTT+TGG 0.296464 1_1:-80341671 None:intergenic
TAGCGCCATGGATGATCTTT+TGG 0.296464 1_1:-80346114 None:intergenic
CCTGAATTGGAGAAAGAAAT+TGG 0.310313 1_1:+80345563 Msa0047460:CDS
AGTTAAAGGGTTTCAGCCTT+TGG 0.316924 1_1:-80341067 None:intergenic
AGTTAAAGGGTTTCAGCCTT+TGG 0.316924 1_1:-80345505 None:intergenic
CCTGAATTGGAGAAAGAAAT+TGG 0.319944 1_1:+80341125 Msa0047460:CDS
TATAAAAGGTTACAGTTAAA+GGG 0.334347 1_1:-80345518 None:intergenic
TTCACAATGTAATGCTGTTC+AGG 0.337030 1_1:-80346848 None:intergenic
GGTGAAATGGTGTGGATATC+AGG 0.337349 1_1:-80340722 None:intergenic
TCAACACATCCAACAAAATT+GGG 0.339618 1_1:-80344936 None:intergenic
TTCACAATGTAGTTCTGTTC+AGG 0.343342 1_1:-80342384 None:intergenic
CGCTTTCTTAATTCTTTCCT+CGG 0.344856 1_1:-80345195 None:intergenic
ACTTAAGATGGCGCCTGAAT+TGG 0.345074 1_1:+80341112 Msa0047460:CDS
TAAGTCTATCGTGATATAAA+AGG 0.348710 1_1:-80341094 None:intergenic
TAAGTCTATCATGATATAAA+AGG 0.348710 1_1:-80345532 None:intergenic
ACGGTCGGTGCTGGACGAAT+TGG 0.352979 1_1:+80341032 Msa0047460:CDS
ATATATGTAAAATTCTTATT+GGG 0.353999 1_1:-80338216 None:intergenic
GGTTACAAGCAGGCTGTTGC+CGG 0.355403 1_1:+80345386 Msa0047460:CDS
GACAAAGAAGGACTCAATTC+TGG 0.356342 1_1:+80340487 Msa0047460:CDS
TATAAAAGGTTACAGTTAAA+GGG 0.356684 1_1:-80341080 None:intergenic
TGTTCTAGTGGACACGTTGC+AGG 0.363087 1_1:+80341523 Msa0047460:CDS
GACAAAGAAGGACCTGATTC+TGG 0.363375 1_1:+80345020 Msa0047460:CDS
TAGGTTACAGTGGTGATGTT+TGG 0.375068 1_1:+80341633 Msa0047460:intron
TAGGTTACAGTGGTGATGTT+TGG 0.375068 1_1:+80346076 Msa0047460:intron
ATCGGTATTGGCTTGCCAAT+TGG 0.378591 1_1:-80346877 None:intergenic
AGCAAGAAAGGGAGAGGAGT+TGG 0.382551 1_1:+80338260 Msa0047460:five_prime_UTR
GATACTACATTCATCGGTAT+TGG 0.383983 1_1:-80346889 None:intergenic
CTTTCCTCGGTGACATAGGC+AGG 0.386770 1_1:-80345182 None:intergenic
TCAAAATTCTAACCAGAATC+AGG 0.393287 1_1:-80345032 None:intergenic
TCAACACATCCAACAAAATT+GGG 0.405718 1_1:-80340403 None:intergenic
CGTCTTTCCTTCAAGATCAT+AGG 0.406591 1_1:-80345441 None:intergenic
ACTTAAGATGGAGCCTGAAT+TGG 0.406632 1_1:+80345550 Msa0047460:CDS
CATTGTGAAGCAGGGCCAAT+TGG 0.415484 1_1:+80346862 Msa0047460:CDS
GGTGAAATGGTGTAGATATC+AGG 0.417800 1_1:-80345160 None:intergenic
TGTCTTTCCTTCAAGATCAT+AGG 0.421953 1_1:-80341003 None:intergenic
ACCGGAGAATGGAATGTTGC+TGG 0.422186 1_1:+80340966 Msa0047460:CDS
TCCAACAAAATTGGGATTCA+AGG 0.426930 1_1:-80340395 None:intergenic
CGGTCGGTGCTGGACGAATT+GGG 0.430059 1_1:+80341033 Msa0047460:CDS
ATATCATGATAGACTTAAGA+TGG 0.430838 1_1:+80345538 Msa0047460:CDS
ATAAACTACCTGTGCATCAA+TGG 0.432079 1_1:-80341735 None:intergenic
GGTTACCATCAGGCTATTAC+CGG 0.432378 1_1:+80340948 Msa0047460:CDS
ACAGTTGGTGCTGGACGAAT+CGG 0.436838 1_1:+80345470 Msa0047460:CDS
TATTATTGAGAATAGGCATC+TGG 0.440836 1_1:+80344855 Msa0047460:intron
CACCTTCTTCCATCATCACC+AGG 0.440843 1_1:+80338539 Msa0047460:CDS
AGCAGGCTGTTGCCGGAGAA+TGG 0.441500 1_1:+80345393 Msa0047460:CDS
CTGCTTCTAACCGCCGGCAT+TGG 0.441881 1_1:+80340792 Msa0047460:CDS
CATAGAGCCTATGATCTTGA+AGG 0.442532 1_1:+80340996 Msa0047460:CDS
CATAGAGCCTATGATCTTGA+AGG 0.442532 1_1:+80345434 Msa0047460:CDS
TGAGGAGTCATCGCATGGTT+TGG 0.445585 1_1:-80346141 None:intergenic
GGAGAGGAGTTGGAAGGAAA+GGG 0.449862 1_1:+80338270 Msa0047460:five_prime_UTR
GGATGTGTTGAAGGAGCATT+AGG 0.450524 1_1:+80340415 Msa0047460:CDS
GGATGTGTTGAAGGAGCATT+AGG 0.450524 1_1:+80344948 Msa0047460:CDS
TGTACTAGTGGACACATTGC+AGG 0.452738 1_1:+80345897 Msa0047460:CDS
GGGAGAGGAGTTGGAAGGAA+AGG 0.454236 1_1:+80338269 Msa0047460:five_prime_UTR
ATGCTTGAGAGGCACTTTAA+GGG 0.454740 1_1:+80342351 Msa0047460:CDS
ATGCTTGAGAGGCACTTTAA+GGG 0.454740 1_1:+80346815 Msa0047460:CDS
ATAAACAACCTGTGCATCAA+TGG 0.455572 1_1:-80346178 None:intergenic
GGAGGAAAGAAGAAAATTGT+AGG 0.456151 1_1:+80344876 Msa0047460:CDS
TGAGGAGTCATAGCATGATT+AGG 0.459588 1_1:-80341698 None:intergenic
CTTGTGAGGAATTTCTTGCC+TGG 0.460979 1_1:+80340927 Msa0047460:CDS
TTTATGTCATTAAGTTGAAT+CGG 0.462170 1_1:-80338161 None:intergenic
GGTGGAAAGAAGAAGATTGT+AGG 0.462288 1_1:+80340343 Msa0047460:CDS
CTTTCCGCAGTGACATAGGC+AGG 0.464618 1_1:-80340744 None:intergenic
TGTTGTTGAGAATAGGCCTC+TGG 0.466148 1_1:+80340322 Msa0047460:intron
CTTTGAAGAAGCAGTGATCA+AGG 0.467599 1_1:-80338500 None:intergenic
ACAGTTGGAACGGTCGGTGC+TGG 0.468606 1_1:+80341023 Msa0047460:CDS
ATATCACGATAGACTTAAGA+TGG 0.470085 1_1:+80341100 Msa0047460:CDS
GTGACATAGGCAGGGTGAAA+TGG 0.470645 1_1:-80340735 None:intergenic
GTGACATAGGCAGGGTGAAA+TGG 0.470645 1_1:-80345173 None:intergenic
TTTCTTGCCTGGTTACCATC+AGG 0.472008 1_1:+80340938 Msa0047460:CDS
CTCGTGAGGAATTTCTTGCC+TGG 0.476350 1_1:+80345365 Msa0047460:CDS
GCCGGAGAATGGAATGTTGC+TGG 0.480317 1_1:+80345404 Msa0047460:CDS
GTTCAGTTACGTTATGCTGC+TGG 0.487635 1_1:+80346782 Msa0047460:intron
ACAGCATTACATTGTGAAGC+AGG 0.492555 1_1:+80346853 Msa0047460:CDS
GATATCAGGACATGCAGATC+GGG 0.492666 1_1:-80345146 None:intergenic
ATGAAGGTCCCTGGTGATGA+TGG 0.493616 1_1:-80338548 None:intergenic
ATCAGGCTATTACCGGAGAA+TGG 0.493947 1_1:+80340955 Msa0047460:CDS
GCCAGCAACATTCCATTCTC+CGG 0.495643 1_1:-80340967 None:intergenic
TGGAACTACCATTGATGCAC+AGG 0.501814 1_1:+80346170 Msa0047460:CDS
ACCAGCAACATTCCATTCTC+CGG 0.501972 1_1:-80345405 None:intergenic
ATTGCTGATGCTTGTTCTAG+TGG 0.505145 1_1:+80341511 Msa0047460:CDS
ACCTTGTCTTATCGGTGAGA+GGG 0.507302 1_1:-80345649 None:intergenic
AATTCTTTCCTCGGTGACAT+AGG 0.513371 1_1:-80345186 None:intergenic
AGAATTGCTAAGTTGAAGAA+AGG 0.514648 1_1:+80341439 Msa0047460:CDS
AGAAATTGGAGCTCAGTTTG+AGG 0.516756 1_1:+80341139 Msa0047460:CDS
AATTCTTTCCGCAGTGACAT+AGG 0.516858 1_1:-80340748 None:intergenic
GCAACAGCCTGCTTGTAACC+AGG 0.517533 1_1:-80345383 None:intergenic
GGAAAGACGGTTGGAACAGT+TGG 0.521323 1_1:+80345455 Msa0047460:CDS
TTGATTGTTAACAATGCTCG+TGG 0.521418 1_1:+80345840 Msa0047460:CDS
TTTCTTGCCTGGTTACAAGC+AGG 0.523136 1_1:+80345376 Msa0047460:CDS
GATATCAGGACATTGAGATC+AGG 0.531388 1_1:-80340708 None:intergenic
CAGTTGGTGCTGGACGAATC+GGG 0.533028 1_1:+80345471 Msa0047460:CDS
GTTCAGTTACGTTATGCTGC+TGG 0.533638 1_1:+80342318 Msa0047460:intron
TGGAACCACCATTGATGCAC+AGG 0.536965 1_1:+80341727 Msa0047460:CDS
AGAAATTGGAGCTCAGTTTG+AGG 0.537059 1_1:+80345577 Msa0047460:CDS
TTAGAGCTGCTTCTAACCGC+CGG 0.540077 1_1:+80340786 Msa0047460:CDS
CACAGGAAGCAACGTAGTAT+CGG 0.541220 1_1:+80345310 Msa0047460:CDS
TGAGAGGCACTTTAAGGGTG+AGG 0.541517 1_1:+80346820 Msa0047460:CDS
TGATTGTTAACAATGCTCGT+GGG 0.541593 1_1:+80345841 Msa0047460:CDS
AGAATCGCTAAGTTGAAGAA+AGG 0.545413 1_1:+80345813 Msa0047460:CDS
TAACTTAACCTGAGTGAGGA+AGG 0.546381 1_1:-80338298 None:intergenic
ATAACAACTATGTCGCACTT+TGG 0.549637 1_1:-80345620 None:intergenic
TTAACTGTCGCAGAGGTCAC+AGG 0.552581 1_1:+80340855 Msa0047460:CDS
ACGGTTGGAACAGTTGGTGC+TGG 0.553144 1_1:+80345461 Msa0047460:CDS
GATCTTGAAGGAAAGACAGT+TGG 0.556559 1_1:+80341008 Msa0047460:CDS
GATCTTGAAGGAAAGACGGT+TGG 0.556559 1_1:+80345446 Msa0047460:CDS
AGAAAGGGAGAGGAGTTGGA+AGG 0.559805 1_1:+80338264 Msa0047460:five_prime_UTR
TACCTTGTCTTATCGGTGAG+AGG 0.560917 1_1:-80345650 None:intergenic
AATGTGATCAGAACCAATGC+CGG 0.563596 1_1:-80340805 None:intergenic
TTAACCGTCGCAGAGGTCAC+AGG 0.565278 1_1:+80345293 Msa0047460:CDS
ACATCCAACAAAATTGGGGT+TGG 0.565621 1_1:-80344931 None:intergenic
GTTGCTGATGCTTGTACTAG+TGG 0.565800 1_1:+80345885 Msa0047460:CDS
ATTAGGTATACGCGAGTGGT+TGG 0.567034 1_1:+80340432 Msa0047460:CDS
ACTTTGGTAGCATTGTATCA+AGG 0.567924 1_1:-80345604 None:intergenic
CAGCTCCAAAAGATCATCCA+TGG 0.568481 1_1:+80341666 Msa0047460:CDS
CAGCTCCAAAAGATCATCCA+TGG 0.568481 1_1:+80346109 Msa0047460:CDS
TGAGCTTACATGAAGGTCCC+TGG 0.575307 1_1:-80338557 None:intergenic
TACCTTGTCTTATCAGTGAG+AGG 0.576761 1_1:-80341212 None:intergenic
AGATATCAGGACATGCAGAT+CGG 0.580334 1_1:-80345147 None:intergenic
ATTGTCACTGATGACAAAGA+AGG 0.582437 1_1:+80340475 Msa0047460:CDS
GGAAAGACAGTTGGAACGGT+CGG 0.583686 1_1:+80341017 Msa0047460:CDS
GTAATAGCCTGATGGTAACC+AGG 0.591423 1_1:-80340945 None:intergenic
TGAGAATTCTCATTCTTGTG+AGG 0.592186 1_1:+80340913 Msa0047460:CDS
GGGTAAAGCCTTCCTCACTC+AGG 0.595514 1_1:+80338290 Msa0047460:five_prime_UTR
TTTCATCTTATAGGTTACAG+TGG 0.595880 1_1:+80346066 Msa0047460:intron
ATTGTAGGTGTGTTCTACAA+AGG 0.596743 1_1:+80344891 Msa0047460:CDS
AATCTTCTTCTTTCCACCAG+AGG 0.597365 1_1:-80340338 None:intergenic
ATTGTCACAGATGACAAAGA+AGG 0.604616 1_1:+80345008 Msa0047460:CDS
CAACGTAGTATCGGTTGCTG+AGG 0.609487 1_1:+80345319 Msa0047460:CDS
GCTTCCTGTGACCTCTGCGA+CGG 0.611055 1_1:-80345297 None:intergenic
AGCGTTGAGATCAATGTGAT+CGG 0.612699 1_1:-80345255 None:intergenic
TGATTAGGCATGTAGCGCCA+TGG 0.614868 1_1:-80341683 None:intergenic
TGAGAATTCTCATTCTCGTG+AGG 0.615649 1_1:+80345351 Msa0047460:CDS
CTATGATCTTGAAGGAAAGA+CGG 0.616356 1_1:+80345442 Msa0047460:CDS
CAACACTGTGTCGGTTGCTG+AGG 0.618658 1_1:+80340881 Msa0047460:CDS
CGCGAGTGGTTGGAATCACA+AGG 0.620030 1_1:+80340442 Msa0047460:CDS
CAACACATCCAACAAAATTG+GGG 0.620958 1_1:-80344935 None:intergenic
CCTTGTCTTATCGGTGAGAG+GGG 0.620981 1_1:-80345648 None:intergenic
ATGGTAGTTCCAGAAATATG+AGG 0.623567 1_1:-80346159 None:intergenic
GAGTCAAAGATATGCTTGAG+AGG 0.624367 1_1:+80342340 Msa0047460:CDS
GAGTCAAAGATATGCTTGAG+AGG 0.624367 1_1:+80346804 Msa0047460:CDS
CCCCTCTCACCGATAAGACA+AGG 0.628167 1_1:+80345648 Msa0047460:CDS
CAGCATTACATTGTGAAGCA+GGG 0.632429 1_1:+80346854 Msa0047460:CDS
AACTACCTGTGCATCAATGG+TGG 0.632641 1_1:-80341732 None:intergenic
TATTGAGAATAGGCATCTGG+AGG 0.633472 1_1:+80344858 Msa0047460:intron
TGGTTTGGCATGTAGCGCCA+TGG 0.634567 1_1:-80346126 None:intergenic
ATTGTAGGTGTGTTCTACAA+AGG 0.635031 1_1:+80340358 Msa0047460:CDS
GATTGTTAACAATGCTCGTG+GGG 0.635440 1_1:+80345842 Msa0047460:CDS
CGCGAGTGGCTTGAATCACA+AGG 0.636363 1_1:+80344975 Msa0047460:CDS
CACAGGAAGCAACACTGTGT+CGG 0.636460 1_1:+80340872 Msa0047460:CDS
TTTCCTCGGTGACATAGGCA+GGG 0.636732 1_1:-80345181 None:intergenic
TTTCCGCAGTGACATAGGCA+GGG 0.641235 1_1:-80340743 None:intergenic
TTGATTGTCAACAATGCTCG+TGG 0.642232 1_1:+80341466 Msa0047460:CDS
AATTGGAGCTCAGTTTGAGG+AGG 0.645215 1_1:+80341142 Msa0047460:CDS
TGTTGAGAATAGGCCTCTGG+TGG 0.646139 1_1:+80340325 Msa0047460:intron
AAATATGAGGAGTCATCGCA+TGG 0.646699 1_1:-80346146 None:intergenic
ATTCTCCGGTAATAGCCTGA+TGG 0.648132 1_1:-80340953 None:intergenic
TCCCTGGTGATGATGGAAGA+AGG 0.649337 1_1:-80338541 None:intergenic
TGAAGGAAAGACAGTTGGAA+CGG 0.651639 1_1:+80341013 Msa0047460:CDS
ACCTTCTTCCATCATCACCA+GGG 0.652169 1_1:+80338540 Msa0047460:CDS
ATAACAATAATGTCGCACTT+CGG 0.654035 1_1:-80341182 None:intergenic
GAGCATTAGGTATACGCGAG+TGG 0.657382 1_1:+80344961 Msa0047460:CDS
TGCTGGTTTAACCGTCGCAG+AGG 0.660243 1_1:+80345286 Msa0047460:CDS
TGCTTAACTTAACCTGAGTG+AGG 0.662618 1_1:-80338302 None:intergenic
ATAGGCAGGGTGAAATGGTG+TGG 0.663821 1_1:-80340730 None:intergenic
GAGCATTAGGTATACGCGAG+TGG 0.665851 1_1:+80340428 Msa0047460:CDS
TCACATTGATCTCAATGCTG+CGG 0.666935 1_1:+80340821 Msa0047460:CDS
TGCTGGTTTAACTGTCGCAG+AGG 0.668788 1_1:+80340848 Msa0047460:CDS
GTTTCATCTATAGGTTACAG+TGG 0.672760 1_1:+80341623 Msa0047460:intron
TGCCTCTCACTGATAAGACA+AGG 0.678138 1_1:+80341210 Msa0047460:CDS
GTAGGTGTGTTCTACAAAGG+CGG 0.684274 1_1:+80340361 Msa0047460:CDS
ATGGTGGTTCCAGAAATATG+AGG 0.685776 1_1:-80341716 None:intergenic
GTGATCAGAACCAATGCCGG+CGG 0.702688 1_1:-80340802 None:intergenic
GTTGAATCGGCTATGTGATG+AGG 0.710161 1_1:-80338148 None:intergenic
TCACCCTGCCTATGTCACTG+CGG 0.753926 1_1:+80340740 Msa0047460:CDS
TCACATTGATCTCAACGCTG+CGG 0.771896 1_1:+80345259 Msa0047460:CDS
TCACCCTGCCTATGTCACCG+AGG 0.774835 1_1:+80345178 Msa0047460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATGTAAAATTCTTATT+GGG - chr1_1:80338219-80338238 None:intergenic 10.0%
!! AATATATGTAAAATTCTTAT+TGG - chr1_1:80338220-80338239 None:intergenic 10.0%
!!! AGTATAATCATTATATTTTT+TGG + chr1_1:80339523-80339542 Msa0047460:intron 10.0%
!!! GTATAATCATTATATTTTTT+GGG + chr1_1:80339524-80339543 Msa0047460:intron 10.0%
!! TTTCAAAAAAAAAAAAAGTA+GGG - chr1_1:80339695-80339714 None:intergenic 10.0%
!! GAATAATTTACTATAATAAA+TGG - chr1_1:80339973-80339992 None:intergenic 10.0%
!! TCAATATTAATATTTCATAT+TGG - chr1_1:80343372-80343391 None:intergenic 10.0%
!! TTTAGTTAAAAATATGAAAA+TGG - chr1_1:80343689-80343708 None:intergenic 10.0%
!! AAAAATTAAAAAACACAAAA+AGG - chr1_1:80344347-80344366 None:intergenic 10.0%
!!! TTTTTTAAAATCTAAAGTAT+TGG + chr1_1:80346452-80346471 Msa0047460:intron 10.0%
!!! TTTTTAAAATCTAAAGTATT+GGG + chr1_1:80346453-80346472 Msa0047460:intron 10.0%
!! TTAAATTAAAAAAGCAAGAA+AGG + chr1_1:80338248-80338267 Msa0047460:five_prime_UTR 15.0%
!! TAAATTAAAAAAGCAAGAAA+GGG + chr1_1:80338249-80338268 Msa0047460:five_prime_UTR 15.0%
!! AAACAAAAATTGTTTGAAAA+TGG + chr1_1:80338456-80338475 Msa0047460:exon 15.0%
!! TTATTCCACAAAATTTAAAA+GGG - chr1_1:80339449-80339468 None:intergenic 15.0%
!! TTTATTCCACAAAATTTAAA+AGG - chr1_1:80339450-80339469 None:intergenic 15.0%
!!! TAAATTTTGTGGAATAAAAT+TGG + chr1_1:80339452-80339471 Msa0047460:intron 15.0%
!! TGCATACATTTATTTAATAA+TGG - chr1_1:80339493-80339512 None:intergenic 15.0%
!! ATAATGATTATACTAATGTA+GGG - chr1_1:80339517-80339536 None:intergenic 15.0%
!! TATAATGATTATACTAATGT+AGG - chr1_1:80339518-80339537 None:intergenic 15.0%
!!! TGGAATATGTTTAATTTTTT+GGG + chr1_1:80339593-80339612 Msa0047460:intron 15.0%
!!! TTTAATTTTTTGGGTAAAAT+GGG + chr1_1:80339602-80339621 Msa0047460:intron 15.0%
!! CTTTCAAAAAAAAAAAAAGT+AGG - chr1_1:80339696-80339715 None:intergenic 15.0%
!!! TTCATATCTAATTTTTTGTT+GGG + chr1_1:80339901-80339920 Msa0047460:intron 15.0%
!!! TAAATTTTGTTAGTCATTTT+AGG - chr1_1:80340158-80340177 None:intergenic 15.0%
!!! TACGATTTTAAACATTTTTT+CGG + chr1_1:80340578-80340597 Msa0047460:intron 15.0%
!! GATTGAAACTAAAATAAATA+CGG + chr1_1:80342129-80342148 Msa0047460:intron 15.0%
!!! ATCTTTATTTAGTAATTCAT+TGG - chr1_1:80342490-80342509 None:intergenic 15.0%
!!! GATAAATATTTTCAATTGAA+AGG - chr1_1:80342662-80342681 None:intergenic 15.0%
!! TCAATTGAAAATATTTATCA+TGG + chr1_1:80342663-80342682 Msa0047460:intron 15.0%
!!! TTATAAATGGTCTTATAATT+AGG - chr1_1:80343251-80343270 None:intergenic 15.0%
!!! AGAGAAACAATTTTTATAAA+TGG - chr1_1:80343264-80343283 None:intergenic 15.0%
!!! ATTTTGTTGTTTCTTTTTAT+GGG + chr1_1:80343821-80343840 Msa0047460:intron 15.0%
!!! TGTAATTTTGATACATTTAA+CGG + chr1_1:80340184-80340203 Msa0047460:intron 15.0%
!! TTCTCAATAATAACAAAAAA+TGG - chr1_1:80344847-80344866 None:intergenic 15.0%
!!! TTTTTGTTATTATTGAGAAT+AGG + chr1_1:80344848-80344867 Msa0047460:intron 15.0%
!!! TTTAAGATAAAGTTTTAAGA+GGG - chr1_1:80345070-80345089 None:intergenic 15.0%
!!! TTTTAAGATAAAGTTTTAAG+AGG - chr1_1:80345071-80345090 None:intergenic 15.0%
!!! AACTTTATCTTAAAAGTTTT+TGG + chr1_1:80345076-80345095 Msa0047460:intron 15.0%
!! TACTATTATTGATCTATTAA+CGG + chr1_1:80345681-80345700 Msa0047460:intron 15.0%
!!! TTTATGTCATTAAGTTGAAT+CGG - chr1_1:80338164-80338183 None:intergenic 20.0%
!! CTTAATTTCATTCAATCATT+TGG + chr1_1:80338594-80338613 Msa0047460:intron 20.0%
!!! CTTTTAAAAATGAGTCTTAA+CGG + chr1_1:80338943-80338962 Msa0047460:intron 20.0%
!! AATAATGCATAATATATGCA+AGG - chr1_1:80339024-80339043 None:intergenic 20.0%
!! TTAGACCTTATGTTTAATTA+AGG + chr1_1:80339111-80339130 Msa0047460:intron 20.0%
!! TAGACCTTATGTTTAATTAA+GGG + chr1_1:80339112-80339131 Msa0047460:intron 20.0%
!! TATTCCACAAAATTTAAAAG+GGG - chr1_1:80339448-80339467 None:intergenic 20.0%
!! ATATTCCACAAAATTAGAAA+GGG - chr1_1:80339581-80339600 None:intergenic 20.0%
!!! GTGGAATATGTTTAATTTTT+TGG + chr1_1:80339592-80339611 Msa0047460:intron 20.0%
!!! GTTTAATTTTTTGGGTAAAA+TGG + chr1_1:80339601-80339620 Msa0047460:intron 20.0%
!!! TACATGATATTTAACTTCAT+TGG - chr1_1:80339790-80339809 None:intergenic 20.0%
!!! AACAATTGTTTGATTTCATT+GGG - chr1_1:80339825-80339844 None:intergenic 20.0%
!!! TAACAATTGTTTGATTTCAT+TGG - chr1_1:80339826-80339845 None:intergenic 20.0%
!! GAAATCAAACAATTGTTAAT+TGG + chr1_1:80339828-80339847 Msa0047460:intron 20.0%
!! CAACAAAAAATTAGATATGA+AGG - chr1_1:80339902-80339921 None:intergenic 20.0%
!!! CTTCATATCTAATTTTTTGT+TGG + chr1_1:80339900-80339919 Msa0047460:intron 20.0%
!!! ACTTTATGGATTAAATTGAT+CGG + chr1_1:80340105-80340124 Msa0047460:intron 20.0%
!! CATATATTCAGATATCAAAA+TGG + chr1_1:80340224-80340243 Msa0047460:intron 20.0%
!! TATAAAAGGTTACAGTTAAA+GGG - chr1_1:80341083-80341102 None:intergenic 20.0%
!! ATATAAAAGGTTACAGTTAA+AGG - chr1_1:80341084-80341103 None:intergenic 20.0%
!! CAAACTAGAAATTAAGATAA+AGG - chr1_1:80341782-80341801 None:intergenic 20.0%
!!! ATAATTTTGAGGAAAACTAT+AGG + chr1_1:80341866-80341885 Msa0047460:intron 20.0%
!!! TAATTTTGAGGAAAACTATA+GGG + chr1_1:80341867-80341886 Msa0047460:intron 20.0%
!!! ATAATTTTGAATCATGAGTT+AGG - chr1_1:80342884-80342903 None:intergenic 20.0%
!! ATACATCTAAAAATTTGTAG+AGG - chr1_1:80343298-80343317 None:intergenic 20.0%
!! AAATGAAACCAAGAAATAAA+CGG - chr1_1:80343493-80343512 None:intergenic 20.0%
!! AATATGAAAATGGATCAAAA+CGG - chr1_1:80343679-80343698 None:intergenic 20.0%
!!! ATAATGATGTGACATATTTT+AGG + chr1_1:80343712-80343731 Msa0047460:intron 20.0%
!!! GGAATTTTATTGTAATTTCA+TGG - chr1_1:80343783-80343802 None:intergenic 20.0%
!!! CATTTTGTTGTTTCTTTTTA+TGG + chr1_1:80343820-80343839 Msa0047460:intron 20.0%
!!! AAATTTTATAGTGTACAGAT+AGG - chr1_1:80344215-80344234 None:intergenic 20.0%
!! TGTCATATCATTATAAATTG+AGG + chr1_1:80344404-80344423 Msa0047460:intron 20.0%
!! GTCATATCATTATAAATTGA+GGG + chr1_1:80344405-80344424 Msa0047460:intron 20.0%
!! ATCAGATAATTAGAAAACTT+AGG + chr1_1:80344508-80344527 Msa0047460:intron 20.0%
!! ATGTTATAGATTAAACTGAT+CGG + chr1_1:80344647-80344666 Msa0047460:intron 20.0%
!! TATACATTCAGATATCAAAA+TGG + chr1_1:80344763-80344782 Msa0047460:intron 20.0%
!! TATAAAAGGTTACAGTTAAA+GGG - chr1_1:80341083-80341102 None:intergenic 20.0%
!! ATATAAAAGGTTACAGTTAA+AGG - chr1_1:80341084-80341103 None:intergenic 20.0%
!! TAAGTCTATCATGATATAAA+AGG - chr1_1:80345535-80345554 None:intergenic 20.0%
!! TAAATTATACCTTGTCTTAT+CGG - chr1_1:80345660-80345679 None:intergenic 20.0%
!! ACTCATAGTTTACATATAAA+TGG - chr1_1:80345731-80345750 None:intergenic 20.0%
!! GAAACTAGAAATTAAGATAA+AGG - chr1_1:80346229-80346248 None:intergenic 20.0%
! AAAACAAAAAAACTTGAAGG+AGG - chr1_1:80338125-80338144 None:intergenic 25.0%
! TGCAAAACAAAAAAACTTGA+AGG - chr1_1:80338128-80338147 None:intergenic 25.0%
!!! CGTTAAGACTCATTTTTAAA+AGG - chr1_1:80338945-80338964 None:intergenic 25.0%
!!! AGTGTTTTTTTTTTTGTGAC+CGG + chr1_1:80338983-80339002 Msa0047460:intron 25.0%
! ATAGCCCTTAATTAAACATA+AGG - chr1_1:80339119-80339138 None:intergenic 25.0%
!! TATATACATGCTGATTACAT+GGG + chr1_1:80339136-80339155 Msa0047460:intron 25.0%
!!! TCCGTGCATTATTTTTTTTA+AGG + chr1_1:80339223-80339242 Msa0047460:intron 25.0%
! CCCTTAAAAAAAATAATGCA+CGG - chr1_1:80339227-80339246 None:intergenic 25.0%
!!! CCGTGCATTATTTTTTTTAA+GGG + chr1_1:80339224-80339243 Msa0047460:intron 25.0%
! ATTCCACAAAATTTAAAAGG+GGG - chr1_1:80339447-80339466 None:intergenic 25.0%
! TATTCCACAAAATTAGAAAG+GGG - chr1_1:80339580-80339599 None:intergenic 25.0%
! CATATTCCACAAAATTAGAA+AGG - chr1_1:80339582-80339601 None:intergenic 25.0%
!!! CTTGTCTAGAACTAAATTTT+TGG + chr1_1:80339731-80339750 Msa0047460:intron 25.0%
!!! ATTTTTTGTTGGGAAAAATC+TGG + chr1_1:80339911-80339930 Msa0047460:intron 25.0%
!! TTAAATGTGTGAAGCATTAT+CGG + chr1_1:80340052-80340071 Msa0047460:intron 25.0%
!!! CTCTTTTGTTTGTAACTTTA+TGG + chr1_1:80340091-80340110 Msa0047460:intron 25.0%
!! CTTTATGGATTAAATTGATC+GGG + chr1_1:80340106-80340125 Msa0047460:intron 25.0%
!!! TTTTTTCTGTTGTTGAGAAT+AGG + chr1_1:80340315-80340334 Msa0047460:intron 25.0%
! TAAGTCTATCGTGATATAAA+AGG - chr1_1:80341097-80341116 None:intergenic 25.0%
!! TTGAAATCTGAAGTCTATAA+GGG + chr1_1:80341279-80341298 Msa0047460:intron 25.0%
! ATTCCAATATCAAAATGACT+TGG + chr1_1:80341312-80341331 Msa0047460:intron 25.0%
!!! AAACCAAGTCATTTTGATAT+TGG - chr1_1:80341318-80341337 None:intergenic 25.0%
!! TTTTTCTTTTTGTGATTCAG+AGG + chr1_1:80341400-80341419 Msa0047460:intron 25.0%
! ATGAAAAGAGAGAGAATTTA+AGG - chr1_1:80341812-80341831 None:intergenic 25.0%
!! GCTCTTAAATGATAATTTTG+AGG + chr1_1:80341855-80341874 Msa0047460:intron 25.0%
!! GTCTAAAACATTAACAATGT+TGG - chr1_1:80342097-80342116 None:intergenic 25.0%
! TTACTAAATAAAGATATCCG+CGG + chr1_1:80342495-80342514 Msa0047460:intron 25.0%
! CTTGTTTAATAAAACTGCAA+TGG + chr1_1:80342555-80342574 Msa0047460:intron 25.0%
!!! TGAGTTTGAATACCTTTTTT+AGG + chr1_1:80342743-80342762 Msa0047460:intron 25.0%
!!! ATTCTTTTGGATTAGAGATT+TGG - chr1_1:80343083-80343102 None:intergenic 25.0%
! TTTCATATTGGAAGACAAAT+TGG - chr1_1:80343360-80343379 None:intergenic 25.0%
! AATGAAACCAAGAAATAAAC+GGG - chr1_1:80343492-80343511 None:intergenic 25.0%
!!! CGGTATGATTTTAAAATTGA+GGG - chr1_1:80343659-80343678 None:intergenic 25.0%
!!! ACGGTATGATTTTAAAATTG+AGG - chr1_1:80343660-80343679 None:intergenic 25.0%
! AGTTCATCATACTGTATTTA+CGG - chr1_1:80343930-80343949 None:intergenic 25.0%
! TGAGTGAAGTTTGAAAAAAA+TGG + chr1_1:80344028-80344047 Msa0047460:intron 25.0%
!! TTACCTTTTATCTTTGTTCT+AGG + chr1_1:80344060-80344079 Msa0047460:intron 25.0%
! AATCCTAGAACAAAGATAAA+AGG - chr1_1:80344066-80344085 None:intergenic 25.0%
!! TTGATTTGATTGTCTAAACA+CGG + chr1_1:80344113-80344132 Msa0047460:intron 25.0%
! TTATAAATTGAGGGAAAATG+TGG + chr1_1:80344414-80344433 Msa0047460:intron 25.0%
! TATAAATTGAGGGAAAATGT+GGG + chr1_1:80344415-80344434 Msa0047460:intron 25.0%
! AAAATCGCCTAAATATATCA+AGG + chr1_1:80344478-80344497 Msa0047460:intron 25.0%
! AAATCGCCTAAATATATCAA+GGG + chr1_1:80344479-80344498 Msa0047460:intron 25.0%
! AGATAATTAGAAAACTTAGG+AGG + chr1_1:80344511-80344530 Msa0047460:intron 25.0%
!! AGCTTTAATGTTATCATCTA+CGG + chr1_1:80344549-80344568 Msa0047460:intron 25.0%
!!! TTTTAGTCTTTTAATGTGTG+AGG + chr1_1:80344583-80344602 Msa0047460:intron 25.0%
! ATACATAAATACCGAGTAAA+CGG - chr1_1:80344789-80344808 None:intergenic 25.0%
! ATATCATGATAGACTTAAGA+TGG + chr1_1:80345538-80345557 Msa0047460:CDS 25.0%
! AGTTTACATATAAATGGACA+TGG - chr1_1:80345725-80345744 None:intergenic 25.0%
!! TTTTTCTTTTTGTGATTCAG+AGG + chr1_1:80341400-80341419 Msa0047460:intron 25.0%
!!! AACAAATTATTTTTGACAGC+TGG - chr1_1:80345934-80345953 None:intergenic 25.0%
! ATTACTTCAAAGTTCAAACA+TGG - chr1_1:80346034-80346053 None:intergenic 25.0%
!! ACAATCTTGTTCATCAATTT+TGG + chr1_1:80346577-80346596 Msa0047460:intron 25.0%
!!! ATTAGCATACCTTTTTTCTT+TGG + chr1_1:80346682-80346701 Msa0047460:intron 25.0%
! AAAAATGGAGAAAATGTAGT+CGG - chr1_1:80346728-80346747 None:intergenic 25.0%
! CAGTAATTTACGCAAAAAAA+TGG - chr1_1:80346743-80346762 None:intergenic 25.0%
AAAAGATTGAGCTTACATGA+AGG - chr1_1:80338567-80338586 None:intergenic 30.0%
TAAGAACTCAAAAGAAGCTT+TGG + chr1_1:80338712-80338731 Msa0047460:intron 30.0%
!!! GTGTTTTTTTTTTTGTGACC+GGG + chr1_1:80338984-80339003 Msa0047460:intron 30.0%
!!! TGTTTTTTTTTTTGTGACCG+GGG + chr1_1:80338985-80339004 Msa0047460:intron 30.0%
!!! AAGGTTTTGAATTTAAACCC+CGG - chr1_1:80339005-80339024 None:intergenic 30.0%
! CTATATACATGCTGATTACA+TGG + chr1_1:80339135-80339154 Msa0047460:intron 30.0%
TTCCACAAAATTTAAAAGGG+GGG - chr1_1:80339446-80339465 None:intergenic 30.0%
TTGTGGAATAAAATTGGTGT+AGG + chr1_1:80339458-80339477 Msa0047460:intron 30.0%
TGTGGAATAAAATTGGTGTA+GGG + chr1_1:80339459-80339478 Msa0047460:intron 30.0%
!!! AATTTTTTGGGTAAAATGGG+AGG + chr1_1:80339605-80339624 Msa0047460:intron 30.0%
ATTTCATTGGGTGAAAAAAC+TGG - chr1_1:80339813-80339832 None:intergenic 30.0%
GAAATGTTAGATGAAACTGA+CGG - chr1_1:80339865-80339884 None:intergenic 30.0%
TCAACACATCCAACAAAATT+GGG - chr1_1:80340406-80340425 None:intergenic 30.0%
TTCAACACATCCAACAAAAT+TGG - chr1_1:80340407-80340426 None:intergenic 30.0%
! AATTTTGTTGGATGTGTTGA+AGG + chr1_1:80340406-80340425 Msa0047460:CDS 30.0%
!! AATAAGAGGGTGGATTAATT+TGG - chr1_1:80340524-80340543 None:intergenic 30.0%
ATATCACGATAGACTTAAGA+TGG + chr1_1:80341100-80341119 Msa0047460:CDS 30.0%
ATAACAATAATGTCGCACTT+CGG - chr1_1:80341185-80341204 None:intergenic 30.0%
! CTTGAAATCTGAAGTCTATA+AGG + chr1_1:80341278-80341297 Msa0047460:intron 30.0%
! AGAATTGCTAAGTTGAAGAA+AGG + chr1_1:80341439-80341458 Msa0047460:CDS 30.0%
AAACTATAGGGTCATATACT+AGG + chr1_1:80341879-80341898 Msa0047460:intron 30.0%
!!! GGCATTCTAAAACAGTTTTT+TGG - chr1_1:80342076-80342095 None:intergenic 30.0%
CGTTAAACTGGTTAAGATAA+AGG + chr1_1:80342162-80342181 Msa0047460:intron 30.0%
AGAAGTTAACCAAAGAACAA+GGG - chr1_1:80342243-80342262 None:intergenic 30.0%
AAGAAGTTAACCAAAGAACA+AGG - chr1_1:80342244-80342263 None:intergenic 30.0%
ATACATAGAGTTGCAACATA+AGG + chr1_1:80342806-80342825 Msa0047460:intron 30.0%
AACATAAGGTCTTAAGTTTG+AGG + chr1_1:80342820-80342839 Msa0047460:intron 30.0%
GAGTTAGGTCATGTAATAAA+AGG - chr1_1:80342869-80342888 None:intergenic 30.0%
AAGTCTACTACTTACTACTT+TGG + chr1_1:80343027-80343046 Msa0047460:intron 30.0%
CGTATACATCAAGAGTAATT+TGG + chr1_1:80343397-80343416 Msa0047460:intron 30.0%
! TATTTGACCCGTTTATTTCT+TGG + chr1_1:80343482-80343501 Msa0047460:intron 30.0%
! ACTCTGCTTTCTTTTTATGT+TGG + chr1_1:80343589-80343608 Msa0047460:intron 30.0%
! AATGTGCAGAAGAATTTTCA+AGG - chr1_1:80343804-80343823 None:intergenic 30.0%
ACATCACATTTCTTTCTTCT+TGG + chr1_1:80343980-80343999 Msa0047460:intron 30.0%
!! CTTTGTTCTAGGATTAAGTT+TGG + chr1_1:80344071-80344090 Msa0047460:intron 30.0%
AAAATGACGTACAGATGAAA+GGG + chr1_1:80344279-80344298 Msa0047460:intron 30.0%
ATCATGAAATTGCACAATTG+AGG + chr1_1:80344442-80344461 Msa0047460:intron 30.0%
AATCGCCTAAATATATCAAG+GGG + chr1_1:80344480-80344499 Msa0047460:intron 30.0%
TTTGACCCCTTGATATATTT+AGG - chr1_1:80344488-80344507 None:intergenic 30.0%
GCTTTAATGTTATCATCTAC+GGG + chr1_1:80344550-80344569 Msa0047460:intron 30.0%
! TTTAATGTGTGAGGCATTAT+CGG + chr1_1:80344592-80344611 Msa0047460:intron 30.0%
TATTATTGAGAATAGGCATC+TGG + chr1_1:80344855-80344874 Msa0047460:intron 30.0%
TCAACACATCCAACAAAATT+GGG - chr1_1:80340406-80340425 None:intergenic 30.0%
TTCAACACATCCAACAAAAT+TGG - chr1_1:80340407-80340426 None:intergenic 30.0%
! AATTTTGTTGGATGTGTTGA+AGG + chr1_1:80340406-80340425 Msa0047460:CDS 30.0%
TCAAAATTCTAACCAGAATC+AGG - chr1_1:80345035-80345054 None:intergenic 30.0%
! AAAAAAGTTTGCTCATTGCT+AGG - chr1_1:80345758-80345777 None:intergenic 30.0%
CAGAAACATAAATGAAATCG+AGG - chr1_1:80345997-80346016 None:intergenic 30.0%
TTTCATCTTATAGGTTACAG+TGG + chr1_1:80346066-80346085 Msa0047460:intron 30.0%
AAATCTGAAAAATTCCGATC+TGG - chr1_1:80346416-80346435 None:intergenic 30.0%
TAGTTTCTACAACAGGTTTA+GGG - chr1_1:80346624-80346643 None:intergenic 30.0%
TTAGTTTCTACAACAGGTTT+AGG - chr1_1:80346625-80346644 None:intergenic 30.0%
! AACAGTTTAGTTTCTACAAC+AGG - chr1_1:80346631-80346650 None:intergenic 30.0%
TGAACTTAGCCAAAGAAAAA+AGG - chr1_1:80346694-80346713 None:intergenic 30.0%
TAAAAAAGCAAGAAAGGGAG+AGG + chr1_1:80338254-80338273 Msa0047460:five_prime_UTR 35.0%
TGAAACGTGAAGAGTAAAGA+GGG - chr1_1:80338382-80338401 None:intergenic 35.0%
TCTCATTGTTCTTTGAGCTT+AGG - chr1_1:80339062-80339081 None:intergenic 35.0%
AATGAGAGAGTGAGTGTTAT+TGG + chr1_1:80339075-80339094 Msa0047460:intron 35.0%
CAAAATTTAAAAGGGGGGTT+TGG - chr1_1:80339441-80339460 None:intergenic 35.0%
! AACCCCCCTTTTAAATTTTG+TGG + chr1_1:80339441-80339460 Msa0047460:intron 35.0%
! TCATCCCCTTTCTAATTTTG+TGG + chr1_1:80339573-80339592 Msa0047460:intron 35.0%
CATTTCATCCCTGCAATTAT+AGG - chr1_1:80339663-80339682 None:intergenic 35.0%
ACAAGCATACATAAGAGACA+AGG - chr1_1:80340257-80340276 None:intergenic 35.0%
ATTGTAGGTGTGTTCTACAA+AGG + chr1_1:80340358-80340377 Msa0047460:CDS 35.0%
! TCCTTGAATCCCAATTTTGT+TGG + chr1_1:80340394-80340413 Msa0047460:CDS 35.0%
TCCAACAAAATTGGGATTCA+AGG - chr1_1:80340398-80340417 None:intergenic 35.0%
ATTGTCACTGATGACAAAGA+AGG + chr1_1:80340475-80340494 Msa0047460:CDS 35.0%
TGAGAATTCTCATTCTTGTG+AGG + chr1_1:80340913-80340932 Msa0047460:CDS 35.0%
TGTCTTTCCTTCAAGATCAT+AGG - chr1_1:80341006-80341025 None:intergenic 35.0%
! TTGGGAAACTTTTACTCCAA+AGG + chr1_1:80341051-80341070 Msa0047460:CDS 35.0%
CCAATTTCTTTCTCCAATTC+AGG - chr1_1:80341128-80341147 None:intergenic 35.0%
CCTGAATTGGAGAAAGAAAT+TGG + chr1_1:80341125-80341144 Msa0047460:CDS 35.0%
! GAAACACATTTTATGTCAGC+TGG - chr1_1:80341560-80341579 None:intergenic 35.0%
AACACCTGAGTTTCATCTAT+AGG + chr1_1:80341614-80341633 Msa0047460:intron 35.0%
GTAACCTATAGATGAAACTC+AGG - chr1_1:80341621-80341640 None:intergenic 35.0%
GTTTCATCTATAGGTTACAG+TGG + chr1_1:80341623-80341642 Msa0047460:intron 35.0%
ATAAACTACCTGTGCATCAA+TGG - chr1_1:80341738-80341757 None:intergenic 35.0%
ACAAACAAGGACACAAACAA+TGG - chr1_1:80341990-80342009 None:intergenic 35.0%
GTATCTATGAAGCACAAACA+AGG - chr1_1:80342003-80342022 None:intergenic 35.0%
GGAAATGAGTAACGTTAAAC+TGG + chr1_1:80342150-80342169 Msa0047460:intron 35.0%
! TTCACAATGTAGTTCTGTTC+AGG - chr1_1:80342387-80342406 None:intergenic 35.0%
TGAACAGAACTACATTGTGA+AGG + chr1_1:80342386-80342405 Msa0047460:intron 35.0%
!! TTCTGAGTCTTGTGGTTTTA+AGG + chr1_1:80342464-80342483 Msa0047460:intron 35.0%
AGTACATTATTACAATGCCG+CGG - chr1_1:80342515-80342534 None:intergenic 35.0%
! TTCTGAAAGATGACATCTTG+TGG - chr1_1:80342698-80342717 None:intergenic 35.0%
TGAGTTCTCTAGCCTAAAAA+AGG - chr1_1:80342758-80342777 None:intergenic 35.0%
! TAAGGTCTTAAGTTTGAGGT+TGG + chr1_1:80342824-80342843 Msa0047460:intron 35.0%
CTTCAAATTGCTGAAAGACA+GGG - chr1_1:80343118-80343137 None:intergenic 35.0%
! TCTTTCAGCAATTTGAAGCT+TGG + chr1_1:80343120-80343139 Msa0047460:intron 35.0%
! TCTGTTTTCGCTCATGAAAT+TGG + chr1_1:80343632-80343651 Msa0047460:intron 35.0%
GTCAATAATCTCACATCATC+AGG - chr1_1:80343758-80343777 None:intergenic 35.0%
!! ACTTTTTCCTCCCAAATGTT+TGG + chr1_1:80343857-80343876 Msa0047460:intron 35.0%
! TGCTTTTGGACCAAACATTT+GGG - chr1_1:80343870-80343889 None:intergenic 35.0%
! ATGCTTTTGGACCAAACATT+TGG - chr1_1:80343871-80343890 None:intergenic 35.0%
AAATGTTTGGTCCAAAAGCA+TGG + chr1_1:80343870-80343889 Msa0047460:intron 35.0%
ATGTAGTTCAAGCACAAGAA+AGG - chr1_1:80343964-80343983 None:intergenic 35.0%
GAAAATGACGTACAGATGAA+AGG + chr1_1:80344278-80344297 Msa0047460:intron 35.0%
! ATTGGTAATATCCATGCATG+AGG + chr1_1:80344370-80344389 Msa0047460:intron 35.0%
TATCAAAATGGCCGTTTACT+CGG + chr1_1:80344775-80344794 Msa0047460:intron 35.0%
GGAGGAAAGAAGAAAATTGT+AGG + chr1_1:80344876-80344895 Msa0047460:CDS 35.0%
ATTGTAGGTGTGTTCTACAA+AGG + chr1_1:80340358-80340377 Msa0047460:CDS 35.0%
CAACACATCCAACAAAATTG+GGG - chr1_1:80340405-80340424 None:intergenic 35.0%
ATTGTCACAGATGACAAAGA+AGG + chr1_1:80345008-80345027 Msa0047460:CDS 35.0%
CGCTTTCTTAATTCTTTCCT+CGG - chr1_1:80345198-80345217 None:intergenic 35.0%
!!! TTACAGTTGCTTTTAACTGC+TGG + chr1_1:80345224-80345243 Msa0047460:CDS 35.0%
CTATGATCTTGAAGGAAAGA+CGG + chr1_1:80341004-80341023 Msa0047460:CDS 35.0%
CCAATTTCTTTCTCCAATTC+AGG - chr1_1:80341128-80341147 None:intergenic 35.0%
CCTGAATTGGAGAAAGAAAT+TGG + chr1_1:80341125-80341144 Msa0047460:CDS 35.0%
! ACTTTGGTAGCATTGTATCA+AGG - chr1_1:80345607-80345626 None:intergenic 35.0%
ATAACAACTATGTCGCACTT+TGG - chr1_1:80345623-80345642 None:intergenic 35.0%
! AGAATCGCTAAGTTGAAGAA+AGG + chr1_1:80345813-80345832 Msa0047460:CDS 35.0%
TTGATTGTTAACAATGCTCG+TGG + chr1_1:80345840-80345859 Msa0047460:CDS 35.0%
TGATTGTTAACAATGCTCGT+GGG + chr1_1:80345841-80345860 Msa0047460:CDS 35.0%
ACAGCTGAGTTTCATCTTAT+AGG + chr1_1:80346057-80346076 Msa0047460:intron 35.0%
ATGGTAGTTCCAGAAATATG+AGG - chr1_1:80346162-80346181 None:intergenic 35.0%
ATAAACAACCTGTGCATCAA+TGG - chr1_1:80346181-80346200 None:intergenic 35.0%
TTCTTCTCGTAAATGTTGCA+AGG - chr1_1:80346329-80346348 None:intergenic 35.0%
TTTAGGGATTCTTATTCGTG+CGG - chr1_1:80346608-80346627 None:intergenic 35.0%
TTCACAATGTAATGCTGTTC+AGG - chr1_1:80346851-80346870 None:intergenic 35.0%
TAACTTAACCTGAGTGAGGA+AGG - chr1_1:80338301-80338320 None:intergenic 40.0%
TGCTTAACTTAACCTGAGTG+AGG - chr1_1:80338305-80338324 None:intergenic 40.0%
AAACGTGAAGAGTAAAGAGG+GGG - chr1_1:80338380-80338399 None:intergenic 40.0%
GAAACGTGAAGAGTAAAGAG+GGG - chr1_1:80338381-80338400 None:intergenic 40.0%
GTGAAACGTGAAGAGTAAAG+AGG - chr1_1:80338383-80338402 None:intergenic 40.0%
! CTTTGAAGAAGCAGTGATCA+AGG - chr1_1:80338503-80338522 None:intergenic 40.0%
! AAAGAAGCTTTGGTGTGATC+TGG + chr1_1:80338722-80338741 Msa0047460:intron 40.0%
TGACTACTGATGGAGACAAA+GGG - chr1_1:80338823-80338842 None:intergenic 40.0%
TTGACTACTGATGGAGACAA+AGG - chr1_1:80338824-80338843 None:intergenic 40.0%
!! TGACAAGTGTTGACTACTGA+TGG - chr1_1:80338833-80338852 None:intergenic 40.0%
TAGAAAGGGGATGAATTGCA+GGG - chr1_1:80339567-80339586 None:intergenic 40.0%
TTAGAAAGGGGATGAATTGC+AGG - chr1_1:80339568-80339587 None:intergenic 40.0%
CTCAGGGATGAAAAATCGAA+TGG + chr1_1:80339637-80339656 Msa0047460:intron 40.0%
ATCGAATGGCCTATAATTGC+AGG + chr1_1:80339651-80339670 Msa0047460:intron 40.0%
TCGAATGGCCTATAATTGCA+GGG + chr1_1:80339652-80339671 Msa0047460:intron 40.0%
GATCCACTATAAAGCTTGGT+GGG - chr1_1:80339947-80339966 None:intergenic 40.0%
AGATCCACTATAAAGCTTGG+TGG - chr1_1:80339948-80339967 None:intergenic 40.0%
AATCTTCTTCTTTCCACCAG+AGG - chr1_1:80340341-80340360 None:intergenic 40.0%
GGTGGAAAGAAGAAGATTGT+AGG + chr1_1:80340343-80340362 Msa0047460:CDS 40.0%
GACAAAGAAGGACTCAATTC+TGG + chr1_1:80340487-80340506 Msa0047460:CDS 40.0%
ACGGCATAGACGTAATAAGA+GGG - chr1_1:80340537-80340556 None:intergenic 40.0%
TACGGCATAGACGTAATAAG+AGG - chr1_1:80340538-80340557 None:intergenic 40.0%
GATATCAGGACATTGAGATC+AGG - chr1_1:80340711-80340730 None:intergenic 40.0%
AATTCTTTCCGCAGTGACAT+AGG - chr1_1:80340751-80340770 None:intergenic 40.0%
AATGTGATCAGAACCAATGC+CGG - chr1_1:80340808-80340827 None:intergenic 40.0%
TCACATTGATCTCAATGCTG+CGG + chr1_1:80340821-80340840 Msa0047460:CDS 40.0%
CATAGAGCCTATGATCTTGA+AGG + chr1_1:80340996-80341015 Msa0047460:CDS 40.0%
GATCTTGAAGGAAAGACAGT+TGG + chr1_1:80341008-80341027 Msa0047460:CDS 40.0%
TGAAGGAAAGACAGTTGGAA+CGG + chr1_1:80341013-80341032 Msa0047460:CDS 40.0%
AGTTAAAGGGTTTCAGCCTT+TGG - chr1_1:80341070-80341089 None:intergenic 40.0%
AGAAATTGGAGCTCAGTTTG+AGG + chr1_1:80341139-80341158 Msa0047460:CDS 40.0%
TACCTTGTCTTATCAGTGAG+AGG - chr1_1:80341215-80341234 None:intergenic 40.0%
TTGATTGTCAACAATGCTCG+TGG + chr1_1:80341466-80341485 Msa0047460:CDS 40.0%
ATTGCTGATGCTTGTTCTAG+TGG + chr1_1:80341511-80341530 Msa0047460:CDS 40.0%
! TAGGTTACAGTGGTGATGTT+TGG + chr1_1:80341633-80341652 Msa0047460:intron 40.0%
TGAGGAGTCATAGCATGATT+AGG - chr1_1:80341701-80341720 None:intergenic 40.0%
GCTATGACTCCTCATATTTC+TGG + chr1_1:80341707-80341726 Msa0047460:CDS 40.0%
ATGGTGGTTCCAGAAATATG+AGG - chr1_1:80341719-80341738 None:intergenic 40.0%
ATGGTAACACTGACACATGT+TGG - chr1_1:80341971-80341990 None:intergenic 40.0%
AACCAAAGAACAAGGGACAA+GGG - chr1_1:80342236-80342255 None:intergenic 40.0%
TAACCAAAGAACAAGGGACA+AGG - chr1_1:80342237-80342256 None:intergenic 40.0%
GAGTCAAAGATATGCTTGAG+AGG + chr1_1:80342340-80342359 Msa0047460:CDS 40.0%
!! TATGCTTGAGAGGCACTTTA+AGG + chr1_1:80342350-80342369 Msa0047460:CDS 40.0%
!! ATGCTTGAGAGGCACTTTAA+GGG + chr1_1:80342351-80342370 Msa0047460:CDS 40.0%
ACAGAACTACATTGTGAAGG+AGG + chr1_1:80342389-80342408 Msa0047460:intron 40.0%
CAGAACTACATTGTGAAGGA+GGG + chr1_1:80342390-80342409 Msa0047460:intron 40.0%
GATACTACATTCACCGGTAT+TGG - chr1_1:80342428-80342447 None:intergenic 40.0%
CTCTTCGATACTACATTCAC+CGG - chr1_1:80342434-80342453 None:intergenic 40.0%
! GTGAATGTAGTATCGAAGAG+TGG + chr1_1:80342434-80342453 Msa0047460:intron 40.0%
GCTTCAAATTGCTGAAAGAC+AGG - chr1_1:80343119-80343138 None:intergenic 40.0%
! TTTTGGACCAAACATTTGGG+AGG - chr1_1:80343867-80343886 None:intergenic 40.0%
! GTAAGACAGAAGCATGTATG+TGG - chr1_1:80344193-80344212 None:intergenic 40.0%
AAATTGAGGGAAAATGTGGG+AGG + chr1_1:80344418-80344437 Msa0047460:intron 40.0%
TGCACAATTGAGGAACTTGA+AGG + chr1_1:80344452-80344471 Msa0047460:intron 40.0%
TATTGAGAATAGGCATCTGG+AGG + chr1_1:80344858-80344877 Msa0047460:intron 40.0%
ACATCCAACAAAATTGGGGT+TGG - chr1_1:80344934-80344953 None:intergenic 40.0%
AGATATCAGGACATGCAGAT+CGG - chr1_1:80345150-80345169 None:intergenic 40.0%
GGTGAAATGGTGTAGATATC+AGG - chr1_1:80345163-80345182 None:intergenic 40.0%
AATTCTTTCCTCGGTGACAT+AGG - chr1_1:80345189-80345208 None:intergenic 40.0%
!! TTGCTTTTAACTGCTGGCAT+TGG + chr1_1:80345230-80345249 Msa0047460:CDS 40.0%
! AGCGTTGAGATCAATGTGAT+CGG - chr1_1:80345258-80345277 None:intergenic 40.0%
TGAGAATTCTCATTCTCGTG+AGG + chr1_1:80345351-80345370 Msa0047460:CDS 40.0%
CATAGAGCCTATGATCTTGA+AGG + chr1_1:80340996-80341015 Msa0047460:CDS 40.0%
CGTCTTTCCTTCAAGATCAT+AGG - chr1_1:80345444-80345463 None:intergenic 40.0%
AGTTAAAGGGTTTCAGCCTT+TGG - chr1_1:80341070-80341089 None:intergenic 40.0%
ACTTAAGATGGAGCCTGAAT+TGG + chr1_1:80345550-80345569 Msa0047460:CDS 40.0%
AGAAATTGGAGCTCAGTTTG+AGG + chr1_1:80341139-80341158 Msa0047460:CDS 40.0%
GATTGTTAACAATGCTCGTG+GGG + chr1_1:80345842-80345861 Msa0047460:CDS 40.0%
! TAGGTTACAGTGGTGATGTT+TGG + chr1_1:80341633-80341652 Msa0047460:intron 40.0%
AAATATGAGGAGTCATCGCA+TGG - chr1_1:80346149-80346168 None:intergenic 40.0%
TTTGGTCATTGGATCCAGAT+CGG + chr1_1:80346399-80346418 Msa0047460:intron 40.0%
CAGTGACATTGGATTGAGAT+CGG - chr1_1:80346496-80346515 None:intergenic 40.0%
AGACACTCCAAATCCATCAT+AGG + chr1_1:80346553-80346572 Msa0047460:intron 40.0%
!! GATTGTGCCTATGATGGATT+TGG - chr1_1:80346563-80346582 None:intergenic 40.0%
GAACAAGATTGTGCCTATGA+TGG - chr1_1:80346569-80346588 None:intergenic 40.0%
GAGAAAATGTAGTCGGTAGT+AGG - chr1_1:80346721-80346740 None:intergenic 40.0%
GAGTCAAAGATATGCTTGAG+AGG + chr1_1:80342340-80342359 Msa0047460:CDS 40.0%
!! TATGCTTGAGAGGCACTTTA+AGG + chr1_1:80342350-80342369 Msa0047460:CDS 40.0%
!! ATGCTTGAGAGGCACTTTAA+GGG + chr1_1:80342351-80342370 Msa0047460:CDS 40.0%
ACAGCATTACATTGTGAAGC+AGG + chr1_1:80346853-80346872 Msa0047460:CDS 40.0%
CAGCATTACATTGTGAAGCA+GGG + chr1_1:80346854-80346873 Msa0047460:CDS 40.0%
GTTGAATCGGCTATGTGATG+AGG - chr1_1:80338151-80338170 None:intergenic 45.0%
AACGTGAAGAGTAAAGAGGG+GGG - chr1_1:80338379-80338398 None:intergenic 45.0%
ACCTTCTTCCATCATCACCA+GGG + chr1_1:80338540-80338559 Msa0047460:CDS 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG + chr1_1:80339620-80339639 Msa0047460:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG + chr1_1:80339621-80339640 Msa0047460:intron 45.0%
! TTGCCCACCAAGCTTTATAG+TGG + chr1_1:80339941-80339960 Msa0047460:intron 45.0%
GGCAGATCCACTATAAAGCT+TGG - chr1_1:80339951-80339970 None:intergenic 45.0%
TGTTGTTGAGAATAGGCCTC+TGG + chr1_1:80340322-80340341 Msa0047460:intron 45.0%
GTAGGTGTGTTCTACAAAGG+CGG + chr1_1:80340361-80340380 Msa0047460:CDS 45.0%
!! GGATGTGTTGAAGGAGCATT+AGG + chr1_1:80340415-80340434 Msa0047460:CDS 45.0%
ATTAGGTATACGCGAGTGGT+TGG + chr1_1:80340432-80340451 Msa0047460:CDS 45.0%
GCATAGACGTAATAAGAGGG+TGG - chr1_1:80340534-80340553 None:intergenic 45.0%
GGTGAAATGGTGTGGATATC+AGG - chr1_1:80340725-80340744 None:intergenic 45.0%
CTTGTGAGGAATTTCTTGCC+TGG + chr1_1:80340927-80340946 Msa0047460:CDS 45.0%
TTTCTTGCCTGGTTACCATC+AGG + chr1_1:80340938-80340957 Msa0047460:CDS 45.0%
GTAATAGCCTGATGGTAACC+AGG - chr1_1:80340948-80340967 None:intergenic 45.0%
GGTTACCATCAGGCTATTAC+CGG + chr1_1:80340948-80340967 Msa0047460:CDS 45.0%
ATTCTCCGGTAATAGCCTGA+TGG - chr1_1:80340956-80340975 None:intergenic 45.0%
ATCAGGCTATTACCGGAGAA+TGG + chr1_1:80340955-80340974 Msa0047460:CDS 45.0%
ACTTAAGATGGCGCCTGAAT+TGG + chr1_1:80341112-80341131 Msa0047460:CDS 45.0%
AATTGGAGCTCAGTTTGAGG+AGG + chr1_1:80341142-80341161 Msa0047460:CDS 45.0%
TGCCTCTCACTGATAAGACA+AGG + chr1_1:80341210-80341229 Msa0047460:CDS 45.0%
!!! GATCTTTTGGAGCTGGTTGT+GGG - chr1_1:80341661-80341680 None:intergenic 45.0%
!!! TGATCTTTTGGAGCTGGTTG+TGG - chr1_1:80341662-80341681 None:intergenic 45.0%
!!! CATGGATGATCTTTTGGAGC+TGG - chr1_1:80341668-80341687 None:intergenic 45.0%
CAGCTCCAAAAGATCATCCA+TGG + chr1_1:80341666-80341685 Msa0047460:CDS 45.0%
! TAGCGCCATGGATGATCTTT+TGG - chr1_1:80341674-80341693 None:intergenic 45.0%
AACTACCTGTGCATCAATGG+TGG - chr1_1:80341735-80341754 None:intergenic 45.0%
AGAGCATACATGCAAGTGTG+AGG - chr1_1:80341840-80341859 None:intergenic 45.0%
! ACGCCTACAATCTGAAGTGT+CGG - chr1_1:80341929-80341948 None:intergenic 45.0%
TGTTGGACATTCACACGTGT+CGG - chr1_1:80341954-80341973 None:intergenic 45.0%
TACCCTTGTCCCTTGTTCTT+TGG + chr1_1:80342231-80342250 Msa0047460:intron 45.0%
GTTCAGTTACGTTATGCTGC+TGG + chr1_1:80342318-80342337 Msa0047460:intron 45.0%
CATTGTGAAGGAGGGTCAAT+TGG + chr1_1:80342398-80342417 Msa0047460:intron 45.0%
GTCAATTGGCAAGCCAATAC+CGG + chr1_1:80342412-80342431 Msa0047460:intron 45.0%
GTTCTGACTTCTGAGTCTTG+TGG + chr1_1:80342456-80342475 Msa0047460:intron 45.0%
! GTCCAAAAGCATGGTGTCTT+TGG + chr1_1:80343879-80343898 Msa0047460:intron 45.0%
! TGCCAAAGACACCATGCTTT+TGG - chr1_1:80343884-80343903 None:intergenic 45.0%
TGGTGTCTTTGGCATCACAA+AGG + chr1_1:80343890-80343909 Msa0047460:intron 45.0%
CTGTATTTACGGATCACGCT+TGG - chr1_1:80343919-80343938 None:intergenic 45.0%
CATGTATGTGGACTTGACTG+TGG - chr1_1:80344181-80344200 None:intergenic 45.0%
TCTCTAAGTGTCCTCATGCA+TGG - chr1_1:80344384-80344403 None:intergenic 45.0%
! GCATCCAACCCCAATTTTGT+TGG + chr1_1:80344927-80344946 Msa0047460:CDS 45.0%
!! GGATGTGTTGAAGGAGCATT+AGG + chr1_1:80340415-80340434 Msa0047460:CDS 45.0%
GACAAAGAAGGACCTGATTC+TGG + chr1_1:80345020-80345039 Msa0047460:CDS 45.0%
GATATCAGGACATGCAGATC+GGG - chr1_1:80345149-80345168 None:intergenic 45.0%
TCACATTGATCTCAACGCTG+CGG + chr1_1:80345259-80345278 Msa0047460:CDS 45.0%
CACAGGAAGCAACGTAGTAT+CGG + chr1_1:80345310-80345329 Msa0047460:CDS 45.0%
TTTCTTGCCTGGTTACAAGC+AGG + chr1_1:80345376-80345395 Msa0047460:CDS 45.0%
ACCAGCAACATTCCATTCTC+CGG - chr1_1:80345408-80345427 None:intergenic 45.0%
GATCTTGAAGGAAAGACGGT+TGG + chr1_1:80345446-80345465 Msa0047460:CDS 45.0%
! TCGGGAAGCTTTTACTCCAA+AGG + chr1_1:80345489-80345508 Msa0047460:CDS 45.0%
ACCTTGTCTTATCGGTGAGA+GGG - chr1_1:80345652-80345671 None:intergenic 45.0%
TACCTTGTCTTATCGGTGAG+AGG - chr1_1:80345653-80345672 None:intergenic 45.0%
GTTGCTGATGCTTGTACTAG+TGG + chr1_1:80345885-80345904 Msa0047460:CDS 45.0%
! TGTACTAGTGGACACATTGC+AGG + chr1_1:80345897-80345916 Msa0047460:CDS 45.0%
!!! GATCTTTTGGAGCTGGTTGT+GGG - chr1_1:80341661-80341680 None:intergenic 45.0%
!!! TGATCTTTTGGAGCTGGTTG+TGG - chr1_1:80341662-80341681 None:intergenic 45.0%
!!! CATGGATGATCTTTTGGAGC+TGG - chr1_1:80341668-80341687 None:intergenic 45.0%
CAGCTCCAAAAGATCATCCA+TGG + chr1_1:80341666-80341685 Msa0047460:CDS 45.0%
! TAGCGCCATGGATGATCTTT+TGG - chr1_1:80341674-80341693 None:intergenic 45.0%
GCGATGACTCCTCATATTTC+TGG + chr1_1:80346150-80346169 Msa0047460:CDS 45.0%
TGGAACTACCATTGATGCAC+AGG + chr1_1:80346170-80346189 Msa0047460:CDS 45.0%
AAGCATGTCACATGCAGATG+TGG + chr1_1:80346353-80346372 Msa0047460:intron 45.0%
AGTCAGCTCATCAGTGACAT+TGG - chr1_1:80346507-80346526 None:intergenic 45.0%
GTTCAGTTACGTTATGCTGC+TGG + chr1_1:80342318-80342337 Msa0047460:intron 45.0%
!! ATCGGTATTGGCTTGCCAAT+TGG - chr1_1:80346880-80346899 None:intergenic 45.0%
!!! TATCTTTTTTTTATTATTTT+TGG - chr1_1:80338689-80338708 None:intergenic 5.0%
!! CATTATAAATTTATAATATA+CGG - chr1_1:80339254-80339273 None:intergenic 5.0%
!!! TTAATTTTAAATTTTAAAAG+TGG - chr1_1:80339279-80339298 None:intergenic 5.0%
!! AATAATTTACTATAATAAAT+GGG - chr1_1:80339972-80339991 None:intergenic 5.0%
!!! TATATATATTAGTTTAATTA+CGG - chr1_1:80340556-80340575 None:intergenic 5.0%
!!! TGTTTTTTAATTTTTAAAAT+TGG + chr1_1:80344352-80344371 Msa0047460:intron 5.0%
AGCAAGAAAGGGAGAGGAGT+TGG + chr1_1:80338260-80338279 Msa0047460:five_prime_UTR 50.0%
AGAAAGGGAGAGGAGTTGGA+AGG + chr1_1:80338264-80338283 Msa0047460:five_prime_UTR 50.0%
GGAGAGGAGTTGGAAGGAAA+GGG + chr1_1:80338270-80338289 Msa0047460:five_prime_UTR 50.0%
CACCTTCTTCCATCATCACC+AGG + chr1_1:80338539-80338558 Msa0047460:CDS 50.0%
!! TCCCTGGTGATGATGGAAGA+AGG - chr1_1:80338544-80338563 None:intergenic 50.0%
! ATGAAGGTCCCTGGTGATGA+TGG - chr1_1:80338551-80338570 None:intergenic 50.0%
TGAGCTTACATGAAGGTCCC+TGG - chr1_1:80338560-80338579 None:intergenic 50.0%
CTGACATCGCGTGAATGTCA+CGG - chr1_1:80338793-80338812 None:intergenic 50.0%
CTACTGATGGAGACAAAGGG+TGG - chr1_1:80338820-80338839 None:intergenic 50.0%
TGTTGAGAATAGGCCTCTGG+TGG + chr1_1:80340325-80340344 Msa0047460:intron 50.0%
GAGCATTAGGTATACGCGAG+TGG + chr1_1:80340428-80340447 Msa0047460:CDS 50.0%
GGAATGTGCTTCTCGAGTTC+TGG - chr1_1:80340690-80340709 None:intergenic 50.0%
ATAGGCAGGGTGAAATGGTG+TGG - chr1_1:80340733-80340752 None:intergenic 50.0%
GTGACATAGGCAGGGTGAAA+TGG - chr1_1:80340738-80340757 None:intergenic 50.0%
TTTCCGCAGTGACATAGGCA+GGG - chr1_1:80340746-80340765 None:intergenic 50.0%
TTAGAGCTGCTTCTAACCGC+CGG + chr1_1:80340786-80340805 Msa0047460:CDS 50.0%
!! TGCTGGTTTAACTGTCGCAG+AGG + chr1_1:80340848-80340867 Msa0047460:CDS 50.0%
TTAACTGTCGCAGAGGTCAC+AGG + chr1_1:80340855-80340874 Msa0047460:CDS 50.0%
CACAGGAAGCAACACTGTGT+CGG + chr1_1:80340872-80340891 Msa0047460:CDS 50.0%
ACCGGAGAATGGAATGTTGC+TGG + chr1_1:80340966-80340985 Msa0047460:CDS 50.0%
GCCAGCAACATTCCATTCTC+CGG - chr1_1:80340970-80340989 None:intergenic 50.0%
GGAAAGACAGTTGGAACGGT+CGG + chr1_1:80341017-80341036 Msa0047460:CDS 50.0%
ACGCATGAATACACAACGCG+TGG - chr1_1:80341366-80341385 None:intergenic 50.0%
! CAATGCTCGTGGAGCACTTA+TGG + chr1_1:80341477-80341496 Msa0047460:CDS 50.0%
! TGTTCTAGTGGACACGTTGC+AGG + chr1_1:80341523-80341542 Msa0047460:CDS 50.0%
TGATTAGGCATGTAGCGCCA+TGG - chr1_1:80341686-80341705 None:intergenic 50.0%
TGGAACCACCATTGATGCAC+AGG + chr1_1:80341727-80341746 Msa0047460:CDS 50.0%
! GCACCGACACTTCAGATTGT+AGG + chr1_1:80341923-80341942 Msa0047460:intron 50.0%
! GCTGCTGCGAGCTATTCTTT+TGG - chr1_1:80343096-80343115 None:intergenic 50.0%
GAGCATTAGGTATACGCGAG+TGG + chr1_1:80340428-80340447 Msa0047460:CDS 50.0%
GGAATGTGCTTCTCGAGTTC+TGG - chr1_1:80340690-80340709 None:intergenic 50.0%
GTGACATAGGCAGGGTGAAA+TGG - chr1_1:80340738-80340757 None:intergenic 50.0%
TTTCCTCGGTGACATAGGCA+GGG - chr1_1:80345184-80345203 None:intergenic 50.0%
!! CAACGTAGTATCGGTTGCTG+AGG + chr1_1:80345319-80345338 Msa0047460:CDS 50.0%
CTCGTGAGGAATTTCTTGCC+TGG + chr1_1:80345365-80345384 Msa0047460:CDS 50.0%
GGAAAGACGGTTGGAACAGT+TGG + chr1_1:80345455-80345474 Msa0047460:CDS 50.0%
!! ACAGTTGGTGCTGGACGAAT+CGG + chr1_1:80345470-80345489 Msa0047460:CDS 50.0%
CCTTGTCTTATCGGTGAGAG+GGG - chr1_1:80345651-80345670 None:intergenic 50.0%
TGAGGAGTCATCGCATGGTT+TGG - chr1_1:80346144-80346163 None:intergenic 50.0%
TGCATTCACGCGCTCATCTT+TGG + chr1_1:80346381-80346400 Msa0047460:intron 50.0%
ACGCGCTCATCTTTGGTCAT+TGG + chr1_1:80346388-80346407 Msa0047460:intron 50.0%
!! AAAGTATTGGGCGTGAGCTC+TGG + chr1_1:80346465-80346484 Msa0047460:intron 50.0%
!! TGAGAGGCACTTTAAGGGTG+AGG + chr1_1:80342356-80342375 Msa0047460:CDS 50.0%
CATTGTGAAGCAGGGCCAAT+TGG + chr1_1:80346862-80346881 Msa0047460:CDS 50.0%
GGGAGAGGAGTTGGAAGGAA+AGG + chr1_1:80338269-80338288 Msa0047460:five_prime_UTR 55.0%
GGGTAAAGCCTTCCTCACTC+AGG + chr1_1:80338290-80338309 Msa0047460:five_prime_UTR 55.0%
GGGGTTTGGAAGAGCTTACG+TGG - chr1_1:80339427-80339446 None:intergenic 55.0%
CGCGAGTGGTTGGAATCACA+AGG + chr1_1:80340442-80340461 Msa0047460:CDS 55.0%
TCACCCTGCCTATGTCACTG+CGG + chr1_1:80340740-80340759 Msa0047460:CDS 55.0%
CTTTCCGCAGTGACATAGGC+AGG - chr1_1:80340747-80340766 None:intergenic 55.0%
GTGATCAGAACCAATGCCGG+CGG - chr1_1:80340805-80340824 None:intergenic 55.0%
!! CAACACTGTGTCGGTTGCTG+AGG + chr1_1:80340881-80340900 Msa0047460:CDS 55.0%
CGCGAGTGGCTTGAATCACA+AGG + chr1_1:80344975-80344994 Msa0047460:CDS 55.0%
CTTTCCTCGGTGACATAGGC+AGG - chr1_1:80345185-80345204 None:intergenic 55.0%
!! TGCTGGTTTAACCGTCGCAG+AGG + chr1_1:80345286-80345305 Msa0047460:CDS 55.0%
TTAACCGTCGCAGAGGTCAC+AGG + chr1_1:80345293-80345312 Msa0047460:CDS 55.0%
GCAACAGCCTGCTTGTAACC+AGG - chr1_1:80345386-80345405 None:intergenic 55.0%
GGTTACAAGCAGGCTGTTGC+CGG + chr1_1:80345386-80345405 Msa0047460:CDS 55.0%
GCCGGAGAATGGAATGTTGC+TGG + chr1_1:80345404-80345423 Msa0047460:CDS 55.0%
! ACGGTTGGAACAGTTGGTGC+TGG + chr1_1:80345461-80345480 Msa0047460:CDS 55.0%
!! CAGTTGGTGCTGGACGAATC+GGG + chr1_1:80345471-80345490 Msa0047460:CDS 55.0%
CCCCTCTCACCGATAAGACA+AGG + chr1_1:80345648-80345667 Msa0047460:CDS 55.0%
CAATGCTCGTGGGGCGATTA+TGG + chr1_1:80345851-80345870 Msa0047460:CDS 55.0%
! TGGTTTGGCATGTAGCGCCA+TGG - chr1_1:80346129-80346148 None:intergenic 55.0%
CTGCTTCTAACCGCCGGCAT+TGG + chr1_1:80340792-80340811 Msa0047460:CDS 60.0%
ACAGTTGGAACGGTCGGTGC+TGG + chr1_1:80341023-80341042 Msa0047460:CDS 60.0%
!! ACGGTCGGTGCTGGACGAAT+TGG + chr1_1:80341032-80341051 Msa0047460:CDS 60.0%
!! CGGTCGGTGCTGGACGAATT+GGG + chr1_1:80341033-80341052 Msa0047460:CDS 60.0%
TCACCCTGCCTATGTCACCG+AGG + chr1_1:80345178-80345197 Msa0047460:CDS 60.0%
GCTTCCTGTGACCTCTGCGA+CGG - chr1_1:80340862-80340881 None:intergenic 60.0%
AGCAGGCTGTTGCCGGAGAA+TGG + chr1_1:80345393-80345412 Msa0047460:CDS 60.0%
CTCAATGCTGCGGCTGCTGC+TGG + chr1_1:80340831-80340850 Msa0047460:CDS 65.0%
CTCAACGCTGCGGCTGCTGC+TGG + chr1_1:80345269-80345288 Msa0047460:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 80338085 80346901 80338085 ID=Msa0047460;Name=Msa0047460
chr1_1 mRNA 80338085 80346901 80338085 ID=Msa0047460-mRNA-1;Parent=Msa0047460;Name=Msa0047460-mRNA-1;_AED=0.13;_eAED=0.13;_QI=263|0.54|0.5|1|0.90|0.83|12|0|729
chr1_1 exon 80338085 80338311 80338085 ID=Msa0047460-mRNA-1:exon:27750;Parent=Msa0047460-mRNA-1
chr1_1 exon 80338439 80338570 80338439 ID=Msa0047460-mRNA-1:exon:27751;Parent=Msa0047460-mRNA-1
chr1_1 exon 80340337 80340508 80340337 ID=Msa0047460-mRNA-1:exon:27752;Parent=Msa0047460-mRNA-1
chr1_1 exon 80340691 80341231 80340691 ID=Msa0047460-mRNA-1:exon:27753;Parent=Msa0047460-mRNA-1
chr1_1 exon 80341420 80341544 80341420 ID=Msa0047460-mRNA-1:exon:27754;Parent=Msa0047460-mRNA-1
chr1_1 exon 80341636 80341748 80341636 ID=Msa0047460-mRNA-1:exon:27755;Parent=Msa0047460-mRNA-1
chr1_1 exon 80342324 80342401 80342324 ID=Msa0047460-mRNA-1:exon:27756;Parent=Msa0047460-mRNA-1
chr1_1 exon 80344870 80345041 80344870 ID=Msa0047460-mRNA-1:exon:27757;Parent=Msa0047460-mRNA-1
chr1_1 exon 80345129 80345669 80345129 ID=Msa0047460-mRNA-1:exon:27758;Parent=Msa0047460-mRNA-1
chr1_1 exon 80345794 80345918 80345794 ID=Msa0047460-mRNA-1:exon:27759;Parent=Msa0047460-mRNA-1
chr1_1 exon 80346079 80346191 80346079 ID=Msa0047460-mRNA-1:exon:27760;Parent=Msa0047460-mRNA-1
chr1_1 exon 80346788 80346901 80346788 ID=Msa0047460-mRNA-1:exon:27761;Parent=Msa0047460-mRNA-1
chr1_1 five_prime_UTR 80338085 80338311 80338085 ID=Msa0047460-mRNA-1:five_prime_utr;Parent=Msa0047460-mRNA-1
chr1_1 five_prime_UTR 80338439 80338474 80338439 ID=Msa0047460-mRNA-1:five_prime_utr;Parent=Msa0047460-mRNA-1
chr1_1 CDS 80338475 80338570 80338475 ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1 CDS 80340337 80340508 80340337 ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1 CDS 80340691 80341231 80340691 ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1 CDS 80341420 80341544 80341420 ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1 CDS 80341636 80341748 80341636 ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1 CDS 80342324 80342401 80342324 ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1 CDS 80344870 80345041 80344870 ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1 CDS 80345129 80345669 80345129 ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1 CDS 80345794 80345918 80345794 ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1 CDS 80346079 80346191 80346079 ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1 CDS 80346788 80346901 80346788 ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
Gene Sequence

>Msa0047460

ATGGCTATGAAACGTGCTGCTTCAACCTTGATCACTGCTTCTTCAAAGATTTCATCACTTTCTTCACCTTCTTCCATCATCACCAGGGACCTTCATGCCTCTGGTGGAAAGAAGAAGATTGTAGGTGTGTTCTACAAAGGCGGTGAATATGCTTCCTTGAATCCCAATTTTGTTGGATGTGTTGAAGGAGCATTAGGTATACGCGAGTGGTTGGAATCACAAGGACATGAGTACATTGTCACTGATGACAAAGAAGGACTCAATTCTGAACTCGAGAAGCACATTCCTGATCTCAATGTCCTGATATCCACACCATTTCACCCTGCCTATGTCACTGCGGAAAGAATTAAGAAAGCTAAGAATTTAGAGCTGCTTCTAACCGCCGGCATTGGTTCTGATCACATTGATCTCAATGCTGCGGCTGCTGCTGGTTTAACTGTCGCAGAGGTCACAGGAAGCAACACTGTGTCGGTTGCTGAGGATGAGCTCATGAGAATTCTCATTCTTGTGAGGAATTTCTTGCCTGGTTACCATCAGGCTATTACCGGAGAATGGAATGTTGCTGGCATTGCACATAGAGCCTATGATCTTGAAGGAAAGACAGTTGGAACGGTCGGTGCTGGACGAATTGGGAAACTTTTACTCCAAAGGCTGAAACCCTTTAACTGTAACCTTTTATATCACGATAGACTTAAGATGGCGCCTGAATTGGAGAAAGAAATTGGAGCTCAGTTTGAGGAGGATCTTGATGCAATGCTTCCGAAGTGCGACATTATTGTTATGAACATGCCTCTCACTGATAAGACAAGAGGATTGTTTGACAAAAATAGAATTGCTAAGTTGAAGAAAGGTGTCTTGATTGTCAACAATGCTCGTGGAGCACTTATGGATACACAAGCAATTGCTGATGCTTGTTCTAGTGGACACGTTGCAGGTTACAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAAGATCATCCATGGCGCTACATGCCTAATCATGCTATGACTCCTCATATTTCTGGAACCACCATTGATGCACAGTTACGTTATGCTGCTGGAGTCAAAGATATGCTTGAGAGGCACTTTAAGGGTGAAGACTTTCCTGAACAGAACTACATTGCATCTGGAGGAAAGAAGAAAATTGTAGGTGTGTTCTACAAAGGCAATGAGAATGCTGCATCCAACCCCAATTTTGTTGGATGTGTTGAAGGAGCATTAGGTATACGCGAGTGGCTTGAATCACAAGGACATGAATACATTGTCACAGATGACAAAGAAGGACCTGATTCTGAACTCGAGAAGCACATTCCCGATCTGCATGTCCTGATATCTACACCATTTCACCCTGCCTATGTCACCGAGGAAAGAATTAAGAAAGCGAAGAATTTACAGTTGCTTTTAACTGCTGGCATTGGTTCCGATCACATTGATCTCAACGCTGCGGCTGCTGCTGGTTTAACCGTCGCAGAGGTCACAGGAAGCAACGTAGTATCGGTTGCTGAGGATGAGCTTATGAGAATTCTCATTCTCGTGAGGAATTTCTTGCCTGGTTACAAGCAGGCTGTTGCCGGAGAATGGAATGTTGCTGGTATTGCACATAGAGCCTATGATCTTGAAGGAAAGACGGTTGGAACAGTTGGTGCTGGACGAATCGGGAAGCTTTTACTCCAAAGGCTGAAACCCTTTAACTGTAACCTTTTATATCATGATAGACTTAAGATGGAGCCTGAATTGGAGAAAGAAATTGGAGCTCAGTTTGAGGACGACCTTGATACAATGCTACCAAAGTGCGACATAGTTGTTATTAACACCCCTCTCACCGATAAGACAAGAGGATTGTTTGACAAAAATAGAATCGCTAAGTTGAAGAAAGGCGTCTTGATTGTTAACAATGCTCGTGGGGCGATTATGGACACACAAGCAGTTGCTGATGCTTGTACTAGTGGACACATTGCAGGTTACAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAAGATCATCCATGGCGCTACATGCCAAACCATGCGATGACTCCTCATATTTCTGGAACTACCATTGATGCACAGTTACGTTATGCTGCTGGAGTCAAAGATATGCTTGAGAGGCACTTTAAGGGTGAGGACTTTCCTGAACAGCATTACATTGTGAAGCAGGGCCAATTGGCAAGCCAATACCGATGA
Protein sequence

>Msa0047460

MAMKRAASTLITASSKISSLSSPSSIITRDLHASGGKKKIVGVFYKGGEYASLNPNFVGCVEGALGIREWLESQGHEYIVTDDKEGLNSELEKHIPDLNVLISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLNAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGYHQAITGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKMAPELEKEIGAQFEEDLDAMLPKCDIIVMNMPLTDKTRGLFDKNRIAKLKKGVLIVNNARGALMDTQAIADACSSGHVAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLERHFKGEDFPEQNYIASGGKKKIVGVFYKGNENAASNPNFVGCVEGALGIREWLESQGHEYIVTDDKEGPDSELEKHIPDLHVLISTPFHPAYVTEERIKKAKNLQLLLTAGIGSDHIDLNAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGYKQAVAGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKMEPELEKEIGAQFEDDLDTMLPKCDIVVINTPLTDKTRGLFDKNRIAKLKKGVLIVNNARGAIMDTQAVADACTSGHIAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLERHFKGEDFPEQHYIVKQGQLASQYR*