AlfalfaGEDB | Msa0047460

M. sativa cultivar zhongmu-4 / Msa0047460

KEGG: K00122
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009507 GO:0009536 GO:0009579 GO:0010035 GO:0010038 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896
PFAM: PF00389.33

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0047460	KAG7559462.1	68.022	713	170	5	1	708	1	660	961
Msa0047460	KAG7559462.1	69.798	692	144	4	2	692	344	971	955
Msa0047460	KAG7559462.1	73.261	733	185	4	1	728	973	1699	1097
Msa0047460	KAG7559462.1	76.024	659	153	2	38	692	660	1317	1035

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0047460	sp\|Q9SXP2\|FDH1_ORYSJ	81.675	382	63	1	348	729	2	376	0.0	643
Msa0047460	sp\|Q9SXP2\|FDH1_ORYSJ	82.105	380	58	1	1	380	1	370	0.0	642

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016510	Msa0047460	0.817386	3.387178e-52	-8.615850e-47
Msa0047460	Msa0065950	0.813168	2.933488e-51	-8.615850e-47
Msa0047460	Msa0107400	0.830785	2.415097e-55	-8.615850e-47
Msa0047460	Msa0139670	0.818488	1.909330e-52	-8.615850e-47
Msa0047460	Msa0153980	0.805958	1.038108e-49	-8.615850e-47
Msa0047460	Msa0164910	0.805215	1.486782e-49	-8.615850e-47
Msa0047460	Msa0190250	0.806547	7.800095e-50	-8.615850e-47
Msa0047460	Msa0203110	0.826148	3.179591e-54	-8.615850e-47
Msa0047460	Msa0246250	0.802161	6.398199e-49	-8.615850e-47
Msa0047460	Msa0257490	0.805550	1.264648e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0047460	MtrunA17_Chr6g0450811	98.158	380	7	0	1	380	1	380	0.0	775
Msa0047460	MtrunA17_Chr6g0450811	93.220	354	24	0	376	729	33	386	0.0	698
Msa0047460	MtrunA17_Chr6g0450821	93.220	354	5	1	376	729	3	337	0.0	673
Msa0047460	MtrunA17_Chr6g0450821	84.571	350	35	1	31	380	1	331	0.0	612
Msa0047460	MtrunA17_Chr4g0000511	30.081	246	168	3	122	367	152	393	6.94e-26	113
Msa0047460	MtrunA17_Chr4g0000511	28.455	246	172	3	465	710	152	393	3.56e-24	107
Msa0047460	MtrunA17_Chr1g0208141	31.600	250	159	5	122	367	119	360	5.36e-24	107
Msa0047460	MtrunA17_Chr1g0208141	29.719	249	165	4	465	710	119	360	2.29e-22	102
Msa0047460	MtrunA17_Chr4g0004711	27.799	259	172	4	113	367	59	306	1.59e-23	102
Msa0047460	MtrunA17_Chr4g0004711	27.799	259	170	5	457	710	60	306	4.31e-23	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0047460	AT5G14780.2	83.898	354	57	0	376	729	17	370	0.0	600
Msa0047460	AT5G14780.2	82.471	348	61	0	33	380	17	364	0.0	583
Msa0047460	AT5G14780.1	83.898	354	57	0	376	729	31	384	0.0	599
Msa0047460	AT5G14780.1	78.478	381	78	2	1	380	1	378	0.0	587
Msa0047460	AT5G14780.3	83.898	354	57	0	376	729	5	358	0.0	598
Msa0047460	AT5G14780.3	82.471	348	61	0	33	380	5	352	0.0	582
Msa0047460	AT1G17745.1	29.286	280	189	6	90	367	115	387	4.48e-26	114
Msa0047460	AT1G17745.1	29.070	258	178	4	454	710	134	387	8.91e-25	110
Msa0047460	AT4G34200.1	30.769	247	165	4	122	367	125	366	1.09e-24	109
Msa0047460	AT4G34200.1	28.862	246	171	3	465	710	125	366	5.79e-23	104

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Find 193 sgRNAs with CRISPR-Local

Find 484 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGAGGAGTCATCGCA+TGG	0.646699	1_1:-80346146	None:intergenic
AACTACCTGTGCATCAATGG+TGG	0.632641	1_1:-80341732	None:intergenic
AATATATGTAAAATTCTTAT+TGG	0.179143	1_1:-80338217	None:intergenic
AATCTTCTTCTTTCCACCAG+AGG	0.597365	1_1:-80340338	None:intergenic
AATGTGATCAGAACCAATGC+CGG	0.563596	1_1:-80340805	None:intergenic
AATTCTTTCCGCAGTGACAT+AGG	0.516858	1_1:-80340748	None:intergenic
AATTCTTTCCTCGGTGACAT+AGG	0.513371	1_1:-80345186	None:intergenic
AATTGGAGCTCAGTTTGAGG+AGG	0.645215	1_1:+80341142	Msa0047460:CDS
ACAGCATTACATTGTGAAGC+AGG	0.492555	1_1:+80346853	Msa0047460:CDS
ACAGTTGGAACGGTCGGTGC+TGG	0.468606	1_1:+80341023	Msa0047460:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATTGAGCTTACATGA+AGG	-	chr1_1:80338567-80338586	None:intergenic	30.0%
TAAGAACTCAAAAGAAGCTT+TGG	+	chr1_1:80338712-80338731	Msa0047460:intron	30.0%
TTCCACAAAATTTAAAAGGG+GGG	-	chr1_1:80339446-80339465	None:intergenic	30.0%
TTGTGGAATAAAATTGGTGT+AGG	+	chr1_1:80339458-80339477	Msa0047460:intron	30.0%
TGTGGAATAAAATTGGTGTA+GGG	+	chr1_1:80339459-80339478	Msa0047460:intron	30.0%
ATTTCATTGGGTGAAAAAAC+TGG	-	chr1_1:80339813-80339832	None:intergenic	30.0%
GAAATGTTAGATGAAACTGA+CGG	-	chr1_1:80339865-80339884	None:intergenic	30.0%
TCAACACATCCAACAAAATT+GGG	-	chr1_1:80340406-80340425	None:intergenic	30.0%
TTCAACACATCCAACAAAAT+TGG	-	chr1_1:80340407-80340426	None:intergenic	30.0%
ATATCACGATAGACTTAAGA+TGG	+	chr1_1:80341100-80341119	Msa0047460:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	80338085	80346901	80338085	ID=Msa0047460;Name=Msa0047460
chr1_1	mRNA	80338085	80346901	80338085	ID=Msa0047460-mRNA-1;Parent=Msa0047460;Name=Msa0047460-mRNA-1;_AED=0.13;_eAED=0.13;_QI=263\|0.54\|0.5\|1\|0.90\|0.83\|12\|0\|729
chr1_1	exon	80338085	80338311	80338085	ID=Msa0047460-mRNA-1:exon:27750;Parent=Msa0047460-mRNA-1
chr1_1	exon	80338439	80338570	80338439	ID=Msa0047460-mRNA-1:exon:27751;Parent=Msa0047460-mRNA-1
chr1_1	exon	80340337	80340508	80340337	ID=Msa0047460-mRNA-1:exon:27752;Parent=Msa0047460-mRNA-1
chr1_1	exon	80340691	80341231	80340691	ID=Msa0047460-mRNA-1:exon:27753;Parent=Msa0047460-mRNA-1
chr1_1	exon	80341420	80341544	80341420	ID=Msa0047460-mRNA-1:exon:27754;Parent=Msa0047460-mRNA-1
chr1_1	exon	80341636	80341748	80341636	ID=Msa0047460-mRNA-1:exon:27755;Parent=Msa0047460-mRNA-1
chr1_1	exon	80342324	80342401	80342324	ID=Msa0047460-mRNA-1:exon:27756;Parent=Msa0047460-mRNA-1
chr1_1	exon	80344870	80345041	80344870	ID=Msa0047460-mRNA-1:exon:27757;Parent=Msa0047460-mRNA-1
chr1_1	exon	80345129	80345669	80345129	ID=Msa0047460-mRNA-1:exon:27758;Parent=Msa0047460-mRNA-1
chr1_1	exon	80345794	80345918	80345794	ID=Msa0047460-mRNA-1:exon:27759;Parent=Msa0047460-mRNA-1
chr1_1	exon	80346079	80346191	80346079	ID=Msa0047460-mRNA-1:exon:27760;Parent=Msa0047460-mRNA-1
chr1_1	exon	80346788	80346901	80346788	ID=Msa0047460-mRNA-1:exon:27761;Parent=Msa0047460-mRNA-1
chr1_1	five_prime_UTR	80338085	80338311	80338085	ID=Msa0047460-mRNA-1:five_prime_utr;Parent=Msa0047460-mRNA-1
chr1_1	five_prime_UTR	80338439	80338474	80338439	ID=Msa0047460-mRNA-1:five_prime_utr;Parent=Msa0047460-mRNA-1
chr1_1	CDS	80338475	80338570	80338475	ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1	CDS	80340337	80340508	80340337	ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1	CDS	80340691	80341231	80340691	ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1	CDS	80341420	80341544	80341420	ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1	CDS	80341636	80341748	80341636	ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1	CDS	80342324	80342401	80342324	ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1	CDS	80344870	80345041	80344870	ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1	CDS	80345129	80345669	80345129	ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1	CDS	80345794	80345918	80345794	ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1	CDS	80346079	80346191	80346079	ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1
chr1_1	CDS	80346788	80346901	80346788	ID=Msa0047460-mRNA-1:cds;Parent=Msa0047460-mRNA-1

Gene Sequence

>Msa0047460

ATGGCTATGAAACGTGCTGCTTCAACCTTGATCACTGCTTCTTCAAAGATTTCATCACTTTCTTCACCTTCTTCCATCATCACCAGGGACCTTCATGCCTCTGGTGGAAAGAAGAAGATTGTAGGTGTGTTCTACAAAGGCGGTGAATATGCTTCCTTGAATCCCAATTTTGTTGGATGTGTTGAAGGAGCATTAGGTATACGCGAGTGGTTGGAATCACAAGGACATGAGTACATTGTCACTGATGACAAAGAAGGACTCAATTCTGAACTCGAGAAGCACATTCCTGATCTCAATGTCCTGATATCCACACCATTTCACCCTGCCTATGTCACTGCGGAAAGAATTAAGAAAGCTAAGAATTTAGAGCTGCTTCTAACCGCCGGCATTGGTTCTGATCACATTGATCTCAATGCTGCGGCTGCTGCTGGTTTAACTGTCGCAGAGGTCACAGGAAGCAACACTGTGTCGGTTGCTGAGGATGAGCTCATGAGAATTCTCATTCTTGTGAGGAATTTCTTGCCTGGTTACCATCAGGCTATTACCGGAGAATGGAATGTTGCTGGCATTGCACATAGAGCCTATGATCTTGAAGGAAAGACAGTTGGAACGGTCGGTGCTGGACGAATTGGGAAACTTTTACTCCAAAGGCTGAAACCCTTTAACTGTAACCTTTTATATCACGATAGACTTAAGATGGCGCCTGAATTGGAGAAAGAAATTGGAGCTCAGTTTGAGGAGGATCTTGATGCAATGCTTCCGAAGTGCGACATTATTGTTATGAACATGCCTCTCACTGATAAGACAAGAGGATTGTTTGACAAAAATAGAATTGCTAAGTTGAAGAAAGGTGTCTTGATTGTCAACAATGCTCGTGGAGCACTTATGGATACACAAGCAATTGCTGATGCTTGTTCTAGTGGACACGTTGCAGGTTACAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAAGATCATCCATGGCGCTACATGCCTAATCATGCTATGACTCCTCATATTTCTGGAACCACCATTGATGCACAGTTACGTTATGCTGCTGGAGTCAAAGATATGCTTGAGAGGCACTTTAAGGGTGAAGACTTTCCTGAACAGAACTACATTGCATCTGGAGGAAAGAAGAAAATTGTAGGTGTGTTCTACAAAGGCAATGAGAATGCTGCATCCAACCCCAATTTTGTTGGATGTGTTGAAGGAGCATTAGGTATACGCGAGTGGCTTGAATCACAAGGACATGAATACATTGTCACAGATGACAAAGAAGGACCTGATTCTGAACTCGAGAAGCACATTCCCGATCTGCATGTCCTGATATCTACACCATTTCACCCTGCCTATGTCACCGAGGAAAGAATTAAGAAAGCGAAGAATTTACAGTTGCTTTTAACTGCTGGCATTGGTTCCGATCACATTGATCTCAACGCTGCGGCTGCTGCTGGTTTAACCGTCGCAGAGGTCACAGGAAGCAACGTAGTATCGGTTGCTGAGGATGAGCTTATGAGAATTCTCATTCTCGTGAGGAATTTCTTGCCTGGTTACAAGCAGGCTGTTGCCGGAGAATGGAATGTTGCTGGTATTGCACATAGAGCCTATGATCTTGAAGGAAAGACGGTTGGAACAGTTGGTGCTGGACGAATCGGGAAGCTTTTACTCCAAAGGCTGAAACCCTTTAACTGTAACCTTTTATATCATGATAGACTTAAGATGGAGCCTGAATTGGAGAAAGAAATTGGAGCTCAGTTTGAGGACGACCTTGATACAATGCTACCAAAGTGCGACATAGTTGTTATTAACACCCCTCTCACCGATAAGACAAGAGGATTGTTTGACAAAAATAGAATCGCTAAGTTGAAGAAAGGCGTCTTGATTGTTAACAATGCTCGTGGGGCGATTATGGACACACAAGCAGTTGCTGATGCTTGTACTAGTGGACACATTGCAGGTTACAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAAGATCATCCATGGCGCTACATGCCAAACCATGCGATGACTCCTCATATTTCTGGAACTACCATTGATGCACAGTTACGTTATGCTGCTGGAGTCAAAGATATGCTTGAGAGGCACTTTAAGGGTGAGGACTTTCCTGAACAGCATTACATTGTGAAGCAGGGCCAATTGGCAAGCCAATACCGATGA

Protein sequence

>Msa0047460

MAMKRAASTLITASSKISSLSSPSSIITRDLHASGGKKKIVGVFYKGGEYASLNPNFVGCVEGALGIREWLESQGHEYIVTDDKEGLNSELEKHIPDLNVLISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLNAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGYHQAITGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKMAPELEKEIGAQFEEDLDAMLPKCDIIVMNMPLTDKTRGLFDKNRIAKLKKGVLIVNNARGALMDTQAIADACSSGHVAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLERHFKGEDFPEQNYIASGGKKKIVGVFYKGNENAASNPNFVGCVEGALGIREWLESQGHEYIVTDDKEGPDSELEKHIPDLHVLISTPFHPAYVTEERIKKAKNLQLLLTAGIGSDHIDLNAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGYKQAVAGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKMEPELEKEIGAQFEDDLDTMLPKCDIVVINTPLTDKTRGLFDKNRIAKLKKGVLIVNNARGAIMDTQAVADACTSGHIAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLERHFKGEDFPEQHYIVKQGQLASQYR*