AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1094280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094280 MtrunA17_Chr7g0224801 96.491 171 5 1 1 170 1 171 5.21e-123 343
Msa1094280 MtrunA17_Chr8g0386241 66.667 93 31 0 69 161 80 172 5.71e-44 143
Msa1094280 MtrunA17_Chr7g0248721 57.364 129 47 3 39 166 93 214 1.02e-42 141
Msa1094280 MtrunA17_Chr1g0194481 63.953 86 31 0 64 149 130 215 1.67e-34 123
Msa1094280 MtrunA17_Chr5g0418781 65.432 81 28 0 68 148 100 180 2.50e-34 121
Msa1094280 MtrunA17_Chr8g0335811 53.398 103 43 1 68 170 130 227 5.69e-34 119
Msa1094280 MtrunA17_Chr7g0270191 63.953 86 31 0 64 149 117 202 7.46e-34 120
Msa1094280 MtrunA17_Chr2g0294231 65.823 79 27 0 76 154 187 265 3.06e-33 121
Msa1094280 MtrunA17_Chr1g0150801 49.495 99 50 0 51 149 61 159 1.54e-30 108
Msa1094280 MtrunA17_Chr5g0418191 40.000 150 73 2 28 160 239 388 1.57e-30 114
Msa1094280 MtrunA17_Chr5g0418191 56.140 57 24 1 92 148 151 206 1.12e-15 73.6
Msa1094280 MtrunA17_Chr4g0051881 65.753 73 25 0 78 150 164 236 1.71e-30 113
Msa1094280 MtrunA17_Chr3g0129361 60.811 74 29 0 75 148 127 200 3.86e-30 109
Msa1094280 MtrunA17_Chr7g0218081 53.763 93 43 0 72 164 390 482 4.27e-30 114
Msa1094280 MtrunA17_Chr7g0218081 56.140 57 24 1 92 148 228 283 8.56e-16 73.9
Msa1094280 MtrunA17_Chr8g0383351 46.212 132 68 2 20 148 85 216 9.35e-30 108
Msa1094280 MtrunA17_Chr3g0079691 45.000 120 52 1 45 150 434 553 1.07e-29 114
Msa1094280 MtrunA17_Chr3g0079691 55.932 59 23 2 92 149 280 336 8.01e-16 73.9
Msa1094280 MtrunA17_Chr4g0042831 44.628 121 55 2 54 162 228 348 1.18e-28 108
Msa1094280 MtrunA17_Chr4g0042831 49.351 77 33 2 92 162 145 221 3.06e-16 75.1
Msa1094280 MtrunA17_Chr5g0443131 64.789 71 25 0 78 148 143 213 1.56e-28 107
Msa1094280 MtrunA17_Chr3g0106491 48.000 100 44 1 51 150 332 423 6.33e-28 108
Msa1094280 MtrunA17_Chr3g0106491 50.000 72 31 2 82 149 184 254 1.40e-15 73.2
Msa1094280 MtrunA17_Chr4g0004911 53.409 88 41 0 63 150 307 394 2.15e-27 106
Msa1094280 MtrunA17_Chr4g0004911 44.928 69 38 0 81 149 173 241 5.65e-15 71.6
Msa1094280 MtrunA17_Chr5g0445311 56.410 78 34 0 73 150 345 422 3.85e-27 106
Msa1094280 MtrunA17_Chr5g0445311 38.393 112 53 3 40 149 159 256 3.16e-16 75.1
Msa1094280 MtrunA17_Chr3g0101131 54.762 84 38 0 73 156 396 479 5.13e-27 106
Msa1094280 MtrunA17_Chr3g0101131 51.515 66 31 1 92 157 243 307 2.33e-16 75.5
Msa1094280 MtrunA17_Chr8g0383251 52.174 92 40 2 64 154 82 170 6.02e-27 100
Msa1094280 MtrunA17_Chr3g0129321 56.338 71 31 0 78 148 104 174 8.35e-27 100
Msa1094280 MtrunA17_Chr7g0243891 51.136 88 43 0 63 150 345 432 3.07e-26 103
Msa1094280 MtrunA17_Chr7g0243891 51.724 58 27 1 92 149 216 272 6.42e-14 68.6
Msa1094280 MtrunA17_Chr5g0432161 50.562 89 43 1 63 150 391 479 3.42e-26 103
Msa1094280 MtrunA17_Chr5g0432161 53.125 64 27 2 92 154 244 305 3.49e-14 69.3
Msa1094280 MtrunA17_Chr4g0068541 58.904 73 30 0 76 148 192 264 4.67e-26 102
Msa1094280 MtrunA17_Chr7g0249311 42.188 128 65 2 35 162 343 461 7.15e-26 102
Msa1094280 MtrunA17_Chr7g0249311 54.386 57 25 1 92 148 179 234 2.56e-15 72.8
Msa1094280 MtrunA17_Chr7g0249301 52.564 78 37 0 73 150 273 350 1.11e-24 98.2
Msa1094280 MtrunA17_Chr7g0249301 50.000 58 28 1 91 148 61 117 3.89e-13 66.2
Msa1094280 MtrunA17_Chr4g0075201 46.429 84 44 1 68 150 243 326 9.20e-24 96.7
Msa1094280 MtrunA17_Chr7g0270831 46.591 88 46 1 76 162 200 287 1.27e-23 95.9
Msa1094280 MtrunA17_Chr2g0288871 50.000 80 39 1 72 150 285 364 2.48e-23 95.5
Msa1094280 MtrunA17_Chr7g0263531 44.340 106 49 2 52 155 329 426 8.30e-23 93.6
Msa1094280 MtrunA17_Chr7g0263531 53.571 56 25 1 93 148 190 244 6.50e-14 68.6
Msa1094280 MtrunA17_Chr2g0322391 45.783 83 44 1 69 150 326 408 3.31e-22 92.4
Msa1094280 MtrunA17_Chr3g0099641 45.977 87 46 1 69 154 228 314 5.87e-22 91.3
Msa1094280 MtrunA17_Chr4g0074001 52.632 76 36 0 73 148 340 415 1.02e-21 90.9
Msa1094280 MtrunA17_Chr4g0051181 48.684 76 38 1 76 150 227 302 6.60e-21 88.6
Msa1094280 MtrunA17_Chr2g0302391 44.211 95 48 2 55 148 178 268 7.41e-21 88.2
Msa1094280 MtrunA17_Chr1g0188941 43.590 78 44 0 73 150 32 109 7.92e-21 82.4
Msa1094280 MtrunA17_Chr4g0025051 47.619 84 43 1 71 153 314 397 1.09e-20 88.2
Msa1094280 MtrunA17_Chr7g0216891 42.697 89 50 1 75 162 202 290 1.47e-20 87.8
Msa1094280 MtrunA17_Chr7g0238921 61.404 57 22 0 92 148 124 180 1.81e-20 85.9
Msa1094280 MtrunA17_Chr5g0447701 52.857 70 33 0 79 148 239 308 3.79e-20 85.9
Msa1094280 MtrunA17_Chr5g0447701 50.000 60 29 1 90 149 90 148 5.11e-13 65.9
Msa1094280 MtrunA17_Chr4g0060271 48.052 77 39 1 75 150 238 314 6.48e-20 85.9
Msa1094280 MtrunA17_Chr4g0025061 47.500 80 41 1 72 150 340 419 1.41e-19 84.7
Msa1094280 MtrunA17_Chr1g0189391 38.017 121 66 2 37 148 34 154 7.28e-19 82.0
Msa1094280 MtrunA17_Chr2g0333851 49.367 79 37 2 74 149 149 227 7.58e-19 81.6
Msa1094280 MtrunA17_Chr6g0485431 46.154 78 41 1 78 154 140 217 1.27e-18 81.6
Msa1094280 MtrunA17_Chr1g0147881 36.765 136 71 4 24 151 194 322 4.12e-18 79.7
Msa1094280 MtrunA17_Chr4g0001361 52.459 61 28 1 90 149 160 220 1.35e-17 78.2
Msa1094280 MtrunA17_Chr3g0136961 54.237 59 26 1 91 148 137 195 1.50e-17 77.8
Msa1094280 MtrunA17_Chr8g0387981 46.237 93 42 2 63 147 98 190 2.58e-17 77.8
Msa1094280 MtrunA17_Chr1g0150271 43.750 80 41 2 75 150 81 160 4.24e-17 75.9
Msa1094280 MtrunA17_Chr7g0244981 40.650 123 65 5 29 147 62 180 1.26e-16 75.1
Msa1094280 MtrunA17_Chr7g0270051 51.724 58 27 1 93 149 54 111 2.23e-16 74.3
Msa1094280 MtrunA17_Chr2g0315361 39.623 106 57 3 61 162 120 222 3.12e-16 74.3
Msa1094280 MtrunA17_Chr1g0150281 52.459 61 28 1 93 152 141 201 4.07e-16 73.9
Msa1094280 MtrunA17_Chr8g0347251 55.000 60 24 1 91 147 135 194 5.18e-16 73.9
Msa1094280 MtrunA17_Chr7g0275531 41.818 110 54 3 48 147 67 176 8.32e-16 73.6
Msa1094280 MtrunA17_Chr7g0244971 36.641 131 76 4 29 155 62 189 1.04e-15 72.8
Msa1094280 MtrunA17_Chr2g0315381 43.299 97 50 3 70 162 123 218 1.53e-15 72.4
Msa1094280 MtrunA17_Chr5g0401821 37.778 90 55 1 68 156 175 264 3.05e-15 71.2
Msa1094280 MtrunA17_Chr4g0053281 46.875 64 33 1 88 150 262 325 4.08e-15 71.6
Msa1094280 MtrunA17_Chr3g0126391 55.000 60 24 1 91 147 132 191 5.08e-15 71.2
Msa1094280 MtrunA17_Chr4g0024391 39.506 81 48 1 71 150 208 288 7.09e-15 71.2
Msa1094280 MtrunA17_Chr5g0447711 43.056 72 41 0 77 148 215 286 9.04e-15 70.5
Msa1094280 MtrunA17_Chr2g0293481 33.628 113 68 2 44 149 213 325 9.16e-15 70.9
Msa1094280 MtrunA17_Chr4g0071521 46.774 62 32 1 88 148 241 302 9.42e-15 70.5
Msa1094280 MtrunA17_Chr8g0334541 40.000 100 56 2 51 147 63 161 9.87e-15 70.1
Msa1094280 MtrunA17_Chr8g0379461 46.154 65 32 2 93 154 77 141 1.25e-14 69.3
Msa1094280 MtrunA17_Chr5g0428351 42.353 85 44 3 68 147 157 241 3.96e-14 68.6
Msa1094280 MtrunA17_Chr8g0348311 48.276 58 29 1 93 149 156 213 4.72e-14 68.6
Msa1094280 MtrunA17_Chr1g0184691 45.161 62 33 1 88 148 289 350 2.65e-13 66.6
Msa1094280 MtrunA17_Chr8g0387501 48.333 60 30 1 91 149 128 187 2.67e-13 65.9
Msa1094280 MtrunA17_Chr8g0350621 41.975 81 36 2 92 161 111 191 3.87e-13 65.5
Msa1094280 MtrunA17_Chr2g0315371 41.975 81 43 2 70 147 120 199 4.02e-13 65.9
Msa1094280 MtrunA17_Chr3g0128671 42.169 83 41 3 69 147 106 185 5.25e-13 65.5
Msa1094280 MtrunA17_Chr7g0228941 35.577 104 54 2 58 148 6 109 7.43e-13 62.0
Msa1094280 MtrunA17_Chr1g0202461 33.333 99 63 3 51 148 222 318 7.48e-13 65.5
Msa1094280 MtrunA17_Chr7g0248691 44.262 61 33 1 90 149 152 212 1.36e-12 64.3
Msa1094280 MtrunA17_Chr3g0139021 45.161 62 33 1 88 148 310 371 2.93e-12 63.5
Msa1094280 MtrunA17_Chr2g0284321 33.673 98 59 2 54 150 2 94 8.22e-12 61.2
Msa1094280 MtrunA17_Chr5g0432071 49.123 57 28 1 92 148 104 159 1.28e-11 60.5
Msa1094280 MtrunA17_Chr2g0319961 43.750 64 33 2 93 153 81 144 1.37e-11 61.2
Msa1094280 MtrunA17_Chr2g0289181 38.462 78 45 2 93 169 15 90 3.18e-11 59.7
Msa1094280 MtrunA17_Chr5g0419241 45.833 48 26 0 71 118 56 103 5.16e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094280 AT5G13080.1 85.870 92 13 0 79 170 54 145 3.88e-57 176
Msa1094280 AT3G01970.1 77.174 92 21 0 79 170 52 143 1.54e-50 159
Msa1094280 AT5G41570.1 58.036 112 47 0 59 170 65 176 1.61e-42 140
Msa1094280 AT2G46130.1 56.731 104 45 0 67 170 5 108 3.85e-41 134
Msa1094280 AT1G64000.1 61.386 101 39 0 68 168 90 190 5.08e-41 137
Msa1094280 AT2G46130.2 52.885 104 45 1 67 170 5 104 1.49e-35 120
Msa1094280 AT1G69310.4 62.963 81 30 0 68 148 123 203 7.48e-34 121
Msa1094280 AT1G69310.2 62.963 81 30 0 68 148 123 203 7.48e-34 121
Msa1094280 AT1G69310.1 62.963 81 30 0 68 148 123 203 7.48e-34 121
Msa1094280 AT4G18170.1 55.446 101 43 1 50 150 132 230 2.94e-33 120
Msa1094280 AT2G44745.1 59.091 88 35 1 68 154 121 208 6.55e-33 117
Msa1094280 AT4G39410.1 45.385 130 64 2 46 170 172 299 4.49e-32 117
Msa1094280 AT2G47260.1 62.353 85 32 0 64 148 146 230 7.88e-32 117
Msa1094280 AT1G29860.1 59.551 89 33 1 76 161 120 208 1.66e-31 115
Msa1094280 AT5G49520.1 62.821 78 29 0 76 153 205 282 5.66e-31 115
Msa1094280 AT5G46350.1 64.384 73 26 0 78 150 169 241 1.21e-29 110
Msa1094280 AT5G64810.1 51.190 84 41 0 65 148 83 166 2.76e-28 104
Msa1094280 AT1G69310.3 58.025 81 30 1 68 148 123 199 2.86e-28 106
Msa1094280 AT4G26640.5 55.682 88 37 1 73 158 186 273 6.90e-28 107
Msa1094280 AT4G26640.5 55.000 60 26 1 90 149 33 91 2.52e-16 75.5
Msa1094280 AT4G26640.6 55.682 88 37 1 73 158 186 273 6.90e-28 107
Msa1094280 AT4G26640.6 55.000 60 26 1 90 149 33 91 2.52e-16 75.5
Msa1094280 AT4G26640.4 55.682 88 37 1 73 158 186 273 6.90e-28 107
Msa1094280 AT4G26640.4 55.000 60 26 1 90 149 33 91 2.52e-16 75.5
Msa1094280 AT4G26640.3 55.682 88 37 1 73 158 186 273 6.90e-28 107
Msa1094280 AT4G26640.3 55.000 60 26 1 90 149 33 91 2.52e-16 75.5
Msa1094280 AT4G26640.7 55.682 88 37 1 73 158 322 409 8.71e-28 108
Msa1094280 AT4G26640.7 55.000 60 26 1 90 149 169 227 1.65e-16 76.3
Msa1094280 AT2G30250.1 55.682 88 39 0 63 150 299 386 1.01e-27 107
Msa1094280 AT2G30250.1 33.803 142 75 6 19 149 89 222 3.76e-12 63.5
Msa1094280 AT4G26640.1 55.682 88 37 1 73 158 290 377 1.11e-27 107
Msa1094280 AT4G26640.1 55.000 60 26 1 90 149 137 195 2.15e-16 75.9
Msa1094280 AT4G26640.2 55.682 88 37 1 73 158 362 449 1.30e-27 108
Msa1094280 AT4G26640.2 55.000 60 26 1 90 149 209 267 1.83e-16 76.3
Msa1094280 AT3G62340.1 60.000 80 32 0 70 149 96 175 1.34e-27 104
Msa1094280 AT5G07100.2 50.000 108 46 2 43 150 100 199 1.68e-27 102
Msa1094280 AT5G07100.2 46.032 63 34 0 92 154 24 86 3.14e-13 65.5
Msa1094280 AT5G07100.4 50.000 108 46 2 43 150 100 199 1.68e-27 102
Msa1094280 AT5G07100.4 46.032 63 34 0 92 154 24 86 3.14e-13 65.5
Msa1094280 AT5G07100.5 50.000 108 46 2 43 150 100 199 1.68e-27 102
Msa1094280 AT5G07100.5 46.032 63 34 0 92 154 24 86 3.14e-13 65.5
Msa1094280 AT5G07100.3 50.000 108 46 2 43 150 100 199 1.68e-27 102
Msa1094280 AT5G07100.3 46.032 63 34 0 92 154 24 86 3.14e-13 65.5
Msa1094280 AT5G07100.1 50.000 108 46 2 43 150 193 292 1.80e-27 105
Msa1094280 AT5G07100.1 46.032 63 34 0 92 154 117 179 2.65e-13 66.6
Msa1094280 AT1G13960.2 62.500 72 27 0 77 148 241 312 5.34e-27 104
Msa1094280 AT1G13960.2 57.895 57 23 1 92 148 76 131 1.77e-15 73.2
Msa1094280 AT1G13960.1 62.500 72 27 0 77 148 394 465 5.50e-27 106
Msa1094280 AT1G13960.1 57.895 57 23 1 92 148 229 284 6.12e-16 74.7
Msa1094280 AT2G03340.1 46.429 112 59 1 39 150 363 473 6.17e-27 105
Msa1094280 AT2G03340.1 52.308 65 30 1 92 156 250 313 7.63e-16 74.3
Msa1094280 AT5G56270.1 42.188 128 52 2 45 150 418 545 3.97e-26 103
Msa1094280 AT5G56270.1 50.877 57 27 1 92 148 273 328 3.60e-14 69.7
Msa1094280 AT2G38470.1 57.692 78 33 0 73 150 343 420 7.01e-26 103
Msa1094280 AT2G38470.1 50.000 58 28 1 92 149 184 240 9.81e-13 65.5
Msa1094280 AT3G01080.2 56.410 78 34 0 73 150 325 402 9.05e-26 102
Msa1094280 AT3G01080.2 54.386 57 25 1 92 148 205 260 1.62e-14 70.5
Msa1094280 AT3G01080.1 56.410 78 34 0 73 150 287 364 9.23e-26 102
Msa1094280 AT3G01080.1 54.386 57 25 1 92 148 167 222 1.99e-14 70.5
Msa1094280 AT5G26170.1 57.143 70 30 0 79 148 100 169 9.45e-26 97.4
Msa1094280 AT4G26440.1 56.410 78 34 0 73 150 353 430 2.77e-25 101
Msa1094280 AT4G26440.1 52.632 57 26 1 92 148 178 233 4.14e-15 72.4
Msa1094280 AT4G04450.2 40.984 122 64 3 40 157 147 264 2.82e-25 100
Msa1094280 AT4G04450.1 40.984 122 64 3 40 157 241 358 2.01e-24 99.0
Msa1094280 AT2G04880.2 51.948 77 37 0 72 148 263 339 7.89e-23 94.4
Msa1094280 AT2G04880.2 56.667 60 25 1 90 149 109 167 1.15e-16 76.6
Msa1094280 AT2G04880.1 51.948 77 37 0 72 148 287 363 8.58e-23 94.4
Msa1094280 AT2G04880.1 56.667 60 25 1 90 149 109 167 1.24e-16 76.6
Msa1094280 AT2G21900.1 43.333 90 48 1 63 149 77 166 9.49e-23 90.1
Msa1094280 AT1G62300.1 48.148 81 41 1 71 150 291 371 1.35e-22 94.0
Msa1094280 AT1G68150.1 48.684 76 38 1 76 150 219 294 3.14e-21 89.4
Msa1094280 AT1G55600.1 51.948 77 37 0 73 149 288 364 3.44e-21 89.7
Msa1094280 AT4G01720.1 50.000 76 37 1 76 150 223 298 2.48e-20 87.4
Msa1094280 AT5G15130.2 47.561 82 40 2 76 154 169 250 2.63e-20 87.4
Msa1094280 AT1G18860.1 46.753 77 40 1 75 150 222 298 2.64e-20 87.4
Msa1094280 AT5G15130.1 47.561 82 40 2 76 154 211 292 2.72e-20 87.4
Msa1094280 AT4G22070.4 46.429 84 44 1 68 150 273 356 3.86e-20 87.0
Msa1094280 AT4G22070.3 46.429 84 44 1 68 150 273 356 3.86e-20 87.0
Msa1094280 AT4G22070.2 46.429 84 44 1 68 150 273 356 3.86e-20 87.0
Msa1094280 AT4G22070.1 46.429 84 44 1 68 150 273 356 3.86e-20 87.0
Msa1094280 AT3G56400.1 36.471 170 77 6 20 161 32 198 4.38e-20 85.1
Msa1094280 AT4G30935.1 50.000 76 38 0 73 148 312 387 5.02e-20 86.3
Msa1094280 AT2G37260.3 46.914 81 42 1 68 148 246 325 1.00e-19 84.7
Msa1094280 AT2G37260.3 57.895 57 21 2 93 148 86 140 2.71e-13 67.0
Msa1094280 AT2G37260.2 46.914 81 42 1 68 148 244 323 1.01e-19 84.7
Msa1094280 AT2G37260.2 57.895 57 21 2 93 148 84 138 2.69e-13 67.0
Msa1094280 AT2G37260.1 46.914 81 42 1 68 148 326 405 1.18e-19 85.1
Msa1094280 AT2G37260.1 57.895 57 21 2 93 148 166 220 2.66e-13 67.0
Msa1094280 AT5G43290.1 55.932 59 26 0 90 148 112 170 1.87e-18 80.5
Msa1094280 AT1G80840.1 36.607 112 65 2 51 156 100 211 3.60e-18 80.1
Msa1094280 AT5G24110.1 44.086 93 43 4 63 147 80 171 2.21e-17 77.8
Msa1094280 AT2G40750.1 46.591 88 39 2 68 147 123 210 2.59e-17 78.2
Msa1094280 AT4G31800.2 54.386 57 25 1 93 148 112 168 9.65e-17 75.5
Msa1094280 AT4G31800.1 54.386 57 25 1 93 148 177 233 1.43e-16 75.9
Msa1094280 AT2G25000.2 52.542 59 27 1 91 148 102 160 2.15e-16 73.9
Msa1094280 AT2G25000.4 52.542 59 27 1 91 148 102 160 2.15e-16 73.9
Msa1094280 AT2G25000.3 54.386 57 25 1 93 148 126 182 2.90e-16 73.9
Msa1094280 AT2G25000.1 52.542 59 27 1 91 148 145 203 3.70e-16 73.9
Msa1094280 AT2G30590.1 32.624 141 89 5 15 149 231 371 5.29e-16 74.7
Msa1094280 AT1G69810.2 38.889 108 49 4 45 150 113 205 8.40e-16 73.9
Msa1094280 AT2G46400.1 41.667 108 53 3 68 167 80 185 1.02e-15 73.2
Msa1094280 AT1G69810.1 38.889 108 49 4 45 150 171 263 1.08e-15 73.9
Msa1094280 AT2G40740.1 55.932 59 23 1 92 147 173 231 1.27e-15 72.8
Msa1094280 AT2G40740.3 55.932 59 23 1 92 147 182 240 1.65e-15 72.8
Msa1094280 AT1G30650.1 40.659 91 46 4 66 149 186 275 2.77e-15 72.8
Msa1094280 AT4G24240.1 42.857 77 41 2 88 161 277 353 3.05e-15 72.4
Msa1094280 AT4G31550.1 48.387 62 31 1 88 148 242 303 3.65e-15 72.0
Msa1094280 AT4G31550.2 48.387 62 31 1 88 148 241 302 3.85e-15 72.0
Msa1094280 AT2G34830.1 39.560 91 47 4 66 149 184 273 4.18e-15 72.4
Msa1094280 AT2G34830.2 39.560 91 47 4 66 149 193 282 5.05e-15 72.0
Msa1094280 AT3G01080.3 54.386 57 25 1 92 148 205 260 6.56e-15 71.2
Msa1094280 AT5G52830.1 46.154 65 34 1 86 149 159 223 7.16e-15 71.2
Msa1094280 AT2G24570.1 38.679 106 60 3 46 148 197 300 8.61e-15 70.9
Msa1094280 AT2G23320.1 44.444 63 34 1 89 150 237 299 1.20e-14 70.5
Msa1094280 AT4G23810.1 55.932 59 23 1 92 147 158 216 1.71e-14 70.1
Msa1094280 AT5G28650.1 45.161 62 33 1 88 148 258 319 4.26e-14 68.9
Msa1094280 AT1G29280.1 44.444 63 34 1 93 154 75 137 4.83e-14 68.2
Msa1094280 AT3G58710.2 40.000 75 44 1 83 156 61 135 1.09e-13 67.4
Msa1094280 AT3G58710.1 40.000 75 44 1 83 156 62 136 1.10e-13 67.4
Msa1094280 AT3G04670.1 45.161 62 33 1 88 148 258 319 1.20e-13 67.8
Msa1094280 AT4G01250.1 48.276 58 29 1 93 149 129 186 1.52e-13 67.4
Msa1094280 AT5G01900.1 33.824 136 71 5 47 164 59 193 2.75e-13 66.2
Msa1094280 AT4G11070.2 54.237 59 24 1 92 147 109 167 4.48e-13 65.9
Msa1094280 AT4G11070.1 54.237 59 24 1 92 147 141 199 5.32e-13 65.9
Msa1094280 AT5G45260.1 38.554 83 46 2 72 149 1186 1268 6.73e-13 66.2
Msa1094280 AT5G45050.4 50.000 58 28 1 93 149 1042 1099 7.89e-13 65.9
Msa1094280 AT5G45050.1 50.000 58 28 1 93 149 1181 1238 7.97e-13 65.9
Msa1094280 AT5G45050.2 50.000 58 28 1 93 149 1153 1210 8.11e-13 65.9
Msa1094280 AT1G66560.1 47.458 59 28 1 92 147 103 161 1.52e-12 63.9
Msa1094280 AT4G23550.1 42.857 63 35 1 89 150 137 199 1.81e-12 64.3
Msa1094280 AT4G12020.3 48.276 58 29 1 91 148 467 523 8.75e-12 63.2
Msa1094280 AT4G12020.3 60.976 41 16 0 72 112 621 661 1.33e-11 62.4
Msa1094280 AT4G12020.10 48.276 58 29 1 91 148 467 523 8.92e-12 63.2
Msa1094280 AT4G12020.10 60.976 41 16 0 72 112 621 661 1.33e-11 62.4
Msa1094280 AT4G12020.2 48.276 58 29 1 91 148 467 523 9.19e-12 62.8
Msa1094280 AT4G12020.2 60.976 41 16 0 72 112 621 661 1.44e-11 62.4
Msa1094280 AT4G12020.4 48.276 58 29 1 91 148 467 523 9.54e-12 62.8
Msa1094280 AT4G12020.4 60.976 41 16 0 72 112 621 661 1.47e-11 62.4
Msa1094280 AT4G12020.1 48.276 58 29 1 91 148 467 523 9.88e-12 62.8
Msa1094280 AT4G12020.1 60.976 41 16 0 72 112 621 661 1.53e-11 62.4
Msa1094280 AT4G12020.9 48.276 58 29 1 91 148 467 523 9.88e-12 62.8
Msa1094280 AT4G12020.9 60.976 41 16 0 72 112 621 661 1.53e-11 62.4
Msa1094280 AT4G12020.6 48.276 58 29 1 91 148 467 523 9.97e-12 62.8
Msa1094280 AT4G12020.6 60.976 41 16 0 72 112 621 661 1.38e-11 62.4
Msa1094280 AT4G12020.8 48.276 58 29 1 91 148 467 523 9.97e-12 62.8
Msa1094280 AT4G12020.8 60.976 41 16 0 72 112 621 661 1.38e-11 62.4
Msa1094280 AT4G12020.7 48.276 58 29 1 91 148 467 523 1.03e-11 62.8
Msa1094280 AT4G12020.7 60.976 41 16 0 72 112 621 661 1.53e-11 62.4
Msa1094280 AT4G12020.5 48.276 58 29 1 91 148 400 456 1.07e-11 62.8
Msa1094280 AT4G12020.5 60.976 41 16 0 72 112 554 594 1.66e-11 62.0
Msa1094280 AT4G12020.11 48.276 58 29 1 91 148 467 523 1.45e-11 62.4
Msa1094280 AT4G12020.11 60.976 41 16 0 72 112 621 661 1.86e-11 62.0
Msa1094280 AT1G66600.1 46.667 60 29 1 91 147 102 161 3.62e-11 60.1
Msa1094280 AT1G66550.2 45.763 59 29 1 92 147 103 161 4.21e-11 60.1
Msa1094280 AT1G66550.1 45.763 59 29 1 92 147 108 166 4.75e-11 60.1

Find 46 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAACACTAATTTCATTAT+TGG 0.193844 7_3:+15722484 None:intergenic
CTTCTCCTTTCACATCTTCA+TGG 0.217389 7_3:+15722456 None:intergenic
TGGTTTGATATAAACTTCTA+TGG 0.261086 7_3:-15722615 Msa1094280:exon
CAAAGCTCAAATGCATTTCT+TGG 0.267190 7_3:-15722518 Msa1094280:CDS
CACCACTAATCCCTCATCTT+TGG 0.281868 7_3:+15721291 None:intergenic
TTATCAGTTGTCTTCTCAAT+AGG 0.283286 7_3:+15721241 None:intergenic
CTAGTTTGAAAAGCATATTT+AGG 0.304775 7_3:+15722365 None:intergenic
AAATTCAGCTATATCTAGTT+TGG 0.345982 7_3:-15720973 Msa1094280:three_prime_UTR
GGTAGGTAAAATGAAGAATA+AGG 0.350345 7_3:+15722694 None:intergenic
AAAGCTTCATATTAATCAAT+TGG 0.355166 7_3:-15721172 Msa1094280:three_prime_UTR
AGAAAATGTTGAATAAATAG+TGG 0.359835 7_3:+15722728 None:intergenic
GGTTATAGATGGAGGAAATA+TGG 0.369235 7_3:-15722317 Msa1094280:CDS
CAGCTATATCTAGTTTGGTT+TGG 0.394856 7_3:-15720968 Msa1094280:three_prime_UTR
TCAAACCACTCGTTGGAATT+CGG 0.398836 7_3:+15722546 None:intergenic
TATCAGTTGTCTTCTCAATA+GGG 0.414753 7_3:+15721242 None:intergenic
TACTTGATGATGGTTATAGA+TGG 0.458004 7_3:-15722328 Msa1094280:CDS
GAAGATGTGAAAGGAGAAGA+AGG 0.477305 7_3:-15722452 Msa1094280:CDS
GAAAATGTTGAATAAATAGT+GGG 0.487618 7_3:+15722729 None:intergenic
TACTATAGGTGCACACATCA+AGG 0.491105 7_3:-15721346 Msa1094280:CDS
AACCAAAGATGAGGGATTAG+TGG 0.495625 7_3:-15721293 Msa1094280:CDS
CAAGTTGATATACTTGATGA+TGG 0.495665 7_3:-15722338 Msa1094280:CDS
ACACTAATTTCATTATTGGT+AGG 0.496138 7_3:+15722488 None:intergenic
ATTCCAACGAGTGGTTTGAA+TGG 0.498944 7_3:-15722542 Msa1094280:CDS
GGAATTCGGTAGCTTGAAGA+AGG 0.509667 7_3:+15722560 None:intergenic
ATGTTAATTAGATCAATTTG+AGG 0.516253 7_3:-15721109 Msa1094280:three_prime_UTR
AAGAAAATGGACTAGGAGGA+TGG 0.557704 7_3:+15722673 None:intergenic
TGCTTGAAAGAAAATGGACT+AGG 0.565226 7_3:+15722666 None:intergenic
AAGATGTGAAAGGAGAAGAA+GGG 0.568417 7_3:-15722451 Msa1094280:CDS
AGCTACCGAATTCCAACGAG+TGG 0.574744 7_3:-15722551 Msa1094280:CDS
AAATGGACTAGGAGGATGGT+AGG 0.582629 7_3:+15722677 None:intergenic
TGACCATTCAAACCACTCGT+TGG 0.583259 7_3:+15722539 None:intergenic
TTGATGATGGTTATAGATGG+AGG 0.595386 7_3:-15722325 Msa1094280:CDS
TTGAAAGAAAATGGACTAGG+AGG 0.605767 7_3:+15722669 None:intergenic
TTAGTGGTGACAACATATGA+AGG 0.606915 7_3:-15721277 Msa1094280:CDS
CATGACCATGAAGATGTGAA+AGG 0.611896 7_3:-15722461 Msa1094280:CDS
GCAACGGTTAACCAAAGATG+AGG 0.611921 7_3:-15721302 Msa1094280:CDS
AAAATGTTGAATAAATAGTG+GGG 0.622819 7_3:+15722730 None:intergenic
ACTATAGGTGCACACATCAA+GGG 0.643060 7_3:-15721345 Msa1094280:CDS
TCAAATTGATCTAATTAACA+TGG 0.644083 7_3:+15721111 None:intergenic
ATTCGGTAGCTTGAAGAAGG+AGG 0.646099 7_3:+15722563 None:intergenic
ATGTAAAGAAACAAGTGCAA+CGG 0.646137 7_3:-15721318 Msa1094280:CDS
TAGCTTGAAGAAGGAGGACA+AGG 0.669596 7_3:+15722569 None:intergenic
AAATGTTGAATAAATAGTGG+GGG 0.673216 7_3:+15722731 None:intergenic
CAACGGTTAACCAAAGATGA+GGG 0.676820 7_3:-15721301 Msa1094280:CDS
AGGAGGACAAGGAAACAACA+TGG 0.676843 7_3:+15722580 None:intergenic
AATGTTAGTATTGATCAACA+AGG 0.714922 7_3:-15722422 Msa1094280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATAAATTGAATTAAA+GGG + chr7_3:15721644-15721663 None:intergenic 10.0%
!! TAACTAAAAAATTAATTAAG+AGG - chr7_3:15721717-15721736 Msa1094280:intron 10.0%
!!! TAAATATTTTTTTGAATAGA+TGG + chr7_3:15722007-15722026 None:intergenic 10.0%
!!! TTTAGACAATATTTTTAATT+TGG - chr7_3:15722673-15722692 Msa1094280:five_prime_UTR 10.0%
!! TGAAAATAAATTGAATTAAA+GGG + chr7_3:15721644-15721663 None:intergenic 10.0%
!! TAACTAAAAAATTAATTAAG+AGG - chr7_3:15721717-15721736 Msa1094280:intron 10.0%
!!! TAAATATTTTTTTGAATAGA+TGG + chr7_3:15722007-15722026 None:intergenic 10.0%
!!! TTTAGACAATATTTTTAATT+TGG - chr7_3:15722673-15722692 Msa1094280:five_prime_UTR 10.0%
!! AAAAAGCTATAATTTCAAAT+TGG - chr7_3:15721067-15721086 Msa1094280:three_prime_UTR 15.0%
!! ATTAACACTAATTTCATTAT+TGG + chr7_3:15721221-15721240 None:intergenic 15.0%
!! GTGAAAATAAATTGAATTAA+AGG + chr7_3:15721645-15721664 None:intergenic 15.0%
!! TAAAATCTACTAATGATTAA+TGG - chr7_3:15721930-15721949 Msa1094280:intron 15.0%
!!! TTTGTTTCAAAGTTTTAAAT+AGG - chr7_3:15722089-15722108 Msa1094280:intron 15.0%
!!! TTGTTTCAAAGTTTTAAATA+GGG - chr7_3:15722090-15722109 Msa1094280:intron 15.0%
!!! TTTTTTCGTTTTTAAACTAA+TGG + chr7_3:15722140-15722159 None:intergenic 15.0%
!! AGATATATAAAATGTCAAAT+AGG - chr7_3:15722245-15722264 Msa1094280:intron 15.0%
!! GATATATAAAATGTCAAATA+GGG - chr7_3:15722246-15722265 Msa1094280:intron 15.0%
!!! CATGTTTTTAACAAATATAT+TGG - chr7_3:15722301-15722320 Msa1094280:CDS 15.0%
!!! CAATTTTATTTTTGTATCAA+AGG + chr7_3:15722636-15722655 None:intergenic 15.0%
!!! TTTTAATTTGGTTCTTTTAT+TGG - chr7_3:15722685-15722704 Msa1094280:five_prime_UTR 15.0%
!! AAAAAGCTATAATTTCAAAT+TGG - chr7_3:15721067-15721086 Msa1094280:three_prime_UTR 15.0%
!! ATTAACACTAATTTCATTAT+TGG + chr7_3:15721221-15721240 None:intergenic 15.0%
!! GTGAAAATAAATTGAATTAA+AGG + chr7_3:15721645-15721664 None:intergenic 15.0%
!! TAAAATCTACTAATGATTAA+TGG - chr7_3:15721930-15721949 Msa1094280:intron 15.0%
!!! TTTGTTTCAAAGTTTTAAAT+AGG - chr7_3:15722089-15722108 Msa1094280:intron 15.0%
!!! TTGTTTCAAAGTTTTAAATA+GGG - chr7_3:15722090-15722109 Msa1094280:intron 15.0%
!!! TTTTTTCGTTTTTAAACTAA+TGG + chr7_3:15722140-15722159 None:intergenic 15.0%
!! AGATATATAAAATGTCAAAT+AGG - chr7_3:15722245-15722264 Msa1094280:intron 15.0%
!! GATATATAAAATGTCAAATA+GGG - chr7_3:15722246-15722265 Msa1094280:intron 15.0%
!!! CATGTTTTTAACAAATATAT+TGG - chr7_3:15722301-15722320 Msa1094280:CDS 15.0%
!!! CAATTTTATTTTTGTATCAA+AGG + chr7_3:15722636-15722655 None:intergenic 15.0%
!!! TTTTAATTTGGTTCTTTTAT+TGG - chr7_3:15722685-15722704 Msa1094280:five_prime_UTR 15.0%
!! AAAATGTTGAATAAATAGTG+GGG + chr7_3:15720975-15720994 None:intergenic 20.0%
!! GAAAATGTTGAATAAATAGT+GGG + chr7_3:15720976-15720995 None:intergenic 20.0%
!! AGAAAATGTTGAATAAATAG+TGG + chr7_3:15720977-15720996 None:intergenic 20.0%
!! TTTATATTCTACAAGTATCT+TGG - chr7_3:15721751-15721770 Msa1094280:intron 20.0%
!! CAAAATATTAACAAAACCAA+TGG + chr7_3:15722329-15722348 None:intergenic 20.0%
!!! TAATATGAAGCTTTTTAGAA+GGG + chr7_3:15722524-15722543 None:intergenic 20.0%
!!! TTAATATGAAGCTTTTTAGA+AGG + chr7_3:15722525-15722544 None:intergenic 20.0%
!! AAAGCTTCATATTAATCAAT+TGG - chr7_3:15722530-15722549 Msa1094280:CDS 20.0%
!! TCAAATTGATCTAATTAACA+TGG + chr7_3:15722594-15722613 None:intergenic 20.0%
!! ATGTTAATTAGATCAATTTG+AGG - chr7_3:15722593-15722612 Msa1094280:CDS 20.0%
!!! TTTTATTTTTGTATCAAAGG+AGG + chr7_3:15722633-15722652 None:intergenic 20.0%
!! AAAATGTTGAATAAATAGTG+GGG + chr7_3:15720975-15720994 None:intergenic 20.0%
!! GAAAATGTTGAATAAATAGT+GGG + chr7_3:15720976-15720995 None:intergenic 20.0%
!! AGAAAATGTTGAATAAATAG+TGG + chr7_3:15720977-15720996 None:intergenic 20.0%
!! TTTATATTCTACAAGTATCT+TGG - chr7_3:15721751-15721770 Msa1094280:intron 20.0%
!! CAAAATATTAACAAAACCAA+TGG + chr7_3:15722329-15722348 None:intergenic 20.0%
!!! TAATATGAAGCTTTTTAGAA+GGG + chr7_3:15722524-15722543 None:intergenic 20.0%
!!! TTAATATGAAGCTTTTTAGA+AGG + chr7_3:15722525-15722544 None:intergenic 20.0%
!! AAAGCTTCATATTAATCAAT+TGG - chr7_3:15722530-15722549 Msa1094280:CDS 20.0%
!! TCAAATTGATCTAATTAACA+TGG + chr7_3:15722594-15722613 None:intergenic 20.0%
!! ATGTTAATTAGATCAATTTG+AGG - chr7_3:15722593-15722612 Msa1094280:CDS 20.0%
!!! TTTTATTTTTGTATCAAAGG+AGG + chr7_3:15722633-15722652 None:intergenic 20.0%
! AAATGTTGAATAAATAGTGG+GGG + chr7_3:15720974-15720993 None:intergenic 25.0%
! TGGTTTGATATAAACTTCTA+TGG - chr7_3:15721087-15721106 Msa1094280:three_prime_UTR 25.0%
! ACACTAATTTCATTATTGGT+AGG + chr7_3:15721217-15721236 None:intergenic 25.0%
!!! AATGTTAGTATTGATCAACA+AGG - chr7_3:15721280-15721299 Msa1094280:CDS 25.0%
! TAAAAAGAAAGGTGAGAAAA+AGG - chr7_3:15721306-15721325 Msa1094280:CDS 25.0%
!! CTAGTTTGAAAAGCATATTT+AGG + chr7_3:15721340-15721359 None:intergenic 25.0%
!! CTAAATATGCTTTTCAAACT+AGG - chr7_3:15721338-15721357 Msa1094280:CDS 25.0%
! TTAAAAACAACAAATTTCCC+AGG - chr7_3:15721419-15721438 Msa1094280:intron 25.0%
!!! TCTTCTTAGTCTTGAATTTT+AGG - chr7_3:15721502-15721521 Msa1094280:intron 25.0%
! TTATTATTGTTACATGTGTG+CGG - chr7_3:15721528-15721547 Msa1094280:intron 25.0%
!! TTGTGATTTATGTTCAAGTT+TGG + chr7_3:15721962-15721981 None:intergenic 25.0%
! AACTTGAACATAAATCACAA+TGG - chr7_3:15721962-15721981 Msa1094280:intron 25.0%
! ATCATCTATATCAACTACAA+TGG - chr7_3:15722027-15722046 Msa1094280:intron 25.0%
! TCATCTATATCAACTACAAT+GGG - chr7_3:15722028-15722047 Msa1094280:intron 25.0%
! ATATCTATATCAACTACGAT+TGG + chr7_3:15722231-15722250 None:intergenic 25.0%
!! TGTCAAATAGGGTTTAAAAT+AGG - chr7_3:15722257-15722276 Msa1094280:intron 25.0%
!! GTCAAATAGGGTTTAAAATA+GGG - chr7_3:15722258-15722277 Msa1094280:intron 25.0%
!!! AACAAATATATTGGTTCCAT+TGG - chr7_3:15722310-15722329 Msa1094280:CDS 25.0%
!!! TGGTTTTGTTAATATTTTGC+AGG - chr7_3:15722330-15722349 Msa1094280:CDS 25.0%
! AAATTCAGCTATATCTAGTT+TGG - chr7_3:15722729-15722748 Msa1094280:five_prime_UTR 25.0%
! AAATGTTGAATAAATAGTGG+GGG + chr7_3:15720974-15720993 None:intergenic 25.0%
! TGGTTTGATATAAACTTCTA+TGG - chr7_3:15721087-15721106 Msa1094280:three_prime_UTR 25.0%
! ACACTAATTTCATTATTGGT+AGG + chr7_3:15721217-15721236 None:intergenic 25.0%
!!! AATGTTAGTATTGATCAACA+AGG - chr7_3:15721280-15721299 Msa1094280:CDS 25.0%
! TAAAAAGAAAGGTGAGAAAA+AGG - chr7_3:15721306-15721325 Msa1094280:CDS 25.0%
!! CTAGTTTGAAAAGCATATTT+AGG + chr7_3:15721340-15721359 None:intergenic 25.0%
!! CTAAATATGCTTTTCAAACT+AGG - chr7_3:15721338-15721357 Msa1094280:CDS 25.0%
! TTAAAAACAACAAATTTCCC+AGG - chr7_3:15721419-15721438 Msa1094280:intron 25.0%
!!! TCTTCTTAGTCTTGAATTTT+AGG - chr7_3:15721502-15721521 Msa1094280:intron 25.0%
! TTATTATTGTTACATGTGTG+CGG - chr7_3:15721528-15721547 Msa1094280:intron 25.0%
!! TTGTGATTTATGTTCAAGTT+TGG + chr7_3:15721962-15721981 None:intergenic 25.0%
! AACTTGAACATAAATCACAA+TGG - chr7_3:15721962-15721981 Msa1094280:intron 25.0%
! ATCATCTATATCAACTACAA+TGG - chr7_3:15722027-15722046 Msa1094280:intron 25.0%
! TCATCTATATCAACTACAAT+GGG - chr7_3:15722028-15722047 Msa1094280:intron 25.0%
! ATATCTATATCAACTACGAT+TGG + chr7_3:15722231-15722250 None:intergenic 25.0%
!! TGTCAAATAGGGTTTAAAAT+AGG - chr7_3:15722257-15722276 Msa1094280:intron 25.0%
!! GTCAAATAGGGTTTAAAATA+GGG - chr7_3:15722258-15722277 Msa1094280:intron 25.0%
!!! AACAAATATATTGGTTCCAT+TGG - chr7_3:15722310-15722329 Msa1094280:CDS 25.0%
!!! TGGTTTTGTTAATATTTTGC+AGG - chr7_3:15722330-15722349 Msa1094280:CDS 25.0%
! AAATTCAGCTATATCTAGTT+TGG - chr7_3:15722729-15722748 Msa1094280:five_prime_UTR 25.0%
GGTAGGTAAAATGAAGAATA+AGG + chr7_3:15721011-15721030 None:intergenic 30.0%
! ACGTTTTGCTTGAAAGAAAA+TGG + chr7_3:15721045-15721064 None:intergenic 30.0%
! CAACAAGGTGTTAAAAAGAA+AGG - chr7_3:15721295-15721314 Msa1094280:CDS 30.0%
!! CAAGTTGATATACTTGATGA+TGG - chr7_3:15721364-15721383 Msa1094280:intron 30.0%
!! TACTTGATGATGGTTATAGA+TGG - chr7_3:15721374-15721393 Msa1094280:intron 30.0%
CAAAGAACAAAAACAAACCT+GGG + chr7_3:15721439-15721458 None:intergenic 30.0%
ACAAAGAACAAAAACAAACC+TGG + chr7_3:15721440-15721459 None:intergenic 30.0%
AACTGAAATATAGTACGGTA+GGG + chr7_3:15721619-15721638 None:intergenic 30.0%
TAACTGAAATATAGTACGGT+AGG + chr7_3:15721620-15721639 None:intergenic 30.0%
GGGATAACTGAAATATAGTA+CGG + chr7_3:15721624-15721643 None:intergenic 30.0%
! TGTGTCTGTCTTTTAGTATT+TGG - chr7_3:15721843-15721862 Msa1094280:intron 30.0%
GCTCATTCTTATATAAGATC+AGG - chr7_3:15721865-15721884 Msa1094280:intron 30.0%
GTCGAATGAAGATTTCATAA+TGG - chr7_3:15722195-15722214 Msa1094280:intron 30.0%
ATGTAAAGAAACAAGTGCAA+CGG - chr7_3:15722384-15722403 Msa1094280:CDS 30.0%
TATCAGTTGTCTTCTCAATA+GGG + chr7_3:15722463-15722482 None:intergenic 30.0%
TTATCAGTTGTCTTCTCAAT+AGG + chr7_3:15722464-15722483 None:intergenic 30.0%
GGTAGGTAAAATGAAGAATA+AGG + chr7_3:15721011-15721030 None:intergenic 30.0%
! ACGTTTTGCTTGAAAGAAAA+TGG + chr7_3:15721045-15721064 None:intergenic 30.0%
! CAACAAGGTGTTAAAAAGAA+AGG - chr7_3:15721295-15721314 Msa1094280:CDS 30.0%
!! CAAGTTGATATACTTGATGA+TGG - chr7_3:15721364-15721383 Msa1094280:intron 30.0%
!! TACTTGATGATGGTTATAGA+TGG - chr7_3:15721374-15721393 Msa1094280:intron 30.0%
CAAAGAACAAAAACAAACCT+GGG + chr7_3:15721439-15721458 None:intergenic 30.0%
ACAAAGAACAAAAACAAACC+TGG + chr7_3:15721440-15721459 None:intergenic 30.0%
AACTGAAATATAGTACGGTA+GGG + chr7_3:15721619-15721638 None:intergenic 30.0%
TAACTGAAATATAGTACGGT+AGG + chr7_3:15721620-15721639 None:intergenic 30.0%
GGGATAACTGAAATATAGTA+CGG + chr7_3:15721624-15721643 None:intergenic 30.0%
! TGTGTCTGTCTTTTAGTATT+TGG - chr7_3:15721843-15721862 Msa1094280:intron 30.0%
GCTCATTCTTATATAAGATC+AGG - chr7_3:15721865-15721884 Msa1094280:intron 30.0%
GTCGAATGAAGATTTCATAA+TGG - chr7_3:15722195-15722214 Msa1094280:intron 30.0%
ATGTAAAGAAACAAGTGCAA+CGG - chr7_3:15722384-15722403 Msa1094280:CDS 30.0%
TATCAGTTGTCTTCTCAATA+GGG + chr7_3:15722463-15722482 None:intergenic 30.0%
TTATCAGTTGTCTTCTCAAT+AGG + chr7_3:15722464-15722483 None:intergenic 30.0%
!! TTGAAAGAAAATGGACTAGG+AGG + chr7_3:15721036-15721055 None:intergenic 35.0%
! TGCTTGAAAGAAAATGGACT+AGG + chr7_3:15721039-15721058 None:intergenic 35.0%
CAAAGCTCAAATGCATTTCT+TGG - chr7_3:15721184-15721203 Msa1094280:exon 35.0%
AAGATGTGAAAGGAGAAGAA+GGG - chr7_3:15721251-15721270 Msa1094280:CDS 35.0%
!! TTGATGATGGTTATAGATGG+AGG - chr7_3:15721377-15721396 Msa1094280:intron 35.0%
GGTTATAGATGGAGGAAATA+TGG - chr7_3:15721385-15721404 Msa1094280:intron 35.0%
ACTGAAATATAGTACGGTAG+GGG + chr7_3:15721618-15721637 None:intergenic 35.0%
! TATTTTGCAGGAGCTACTAT+AGG - chr7_3:15722342-15722361 Msa1094280:CDS 35.0%
TTAGTGGTGACAACATATGA+AGG - chr7_3:15722425-15722444 Msa1094280:CDS 35.0%
! CAGCTATATCTAGTTTGGTT+TGG - chr7_3:15722734-15722753 Msa1094280:five_prime_UTR 35.0%
!! TTGAAAGAAAATGGACTAGG+AGG + chr7_3:15721036-15721055 None:intergenic 35.0%
! TGCTTGAAAGAAAATGGACT+AGG + chr7_3:15721039-15721058 None:intergenic 35.0%
CAAAGCTCAAATGCATTTCT+TGG - chr7_3:15721184-15721203 Msa1094280:exon 35.0%
AAGATGTGAAAGGAGAAGAA+GGG - chr7_3:15721251-15721270 Msa1094280:CDS 35.0%
!! TTGATGATGGTTATAGATGG+AGG - chr7_3:15721377-15721396 Msa1094280:intron 35.0%
GGTTATAGATGGAGGAAATA+TGG - chr7_3:15721385-15721404 Msa1094280:intron 35.0%
ACTGAAATATAGTACGGTAG+GGG + chr7_3:15721618-15721637 None:intergenic 35.0%
! TATTTTGCAGGAGCTACTAT+AGG - chr7_3:15722342-15722361 Msa1094280:CDS 35.0%
TTAGTGGTGACAACATATGA+AGG - chr7_3:15722425-15722444 Msa1094280:CDS 35.0%
! CAGCTATATCTAGTTTGGTT+TGG - chr7_3:15722734-15722753 Msa1094280:five_prime_UTR 35.0%
! TGTTGAATAAATAGTGGGGG+CGG + chr7_3:15720971-15720990 None:intergenic 40.0%
!! AAGAAAATGGACTAGGAGGA+TGG + chr7_3:15721032-15721051 None:intergenic 40.0%
TCAAACCACTCGTTGGAATT+CGG + chr7_3:15721159-15721178 None:intergenic 40.0%
ATTCCAACGAGTGGTTTGAA+TGG - chr7_3:15721160-15721179 Msa1094280:three_prime_UTR 40.0%
CATGACCATGAAGATGTGAA+AGG - chr7_3:15721241-15721260 Msa1094280:CDS 40.0%
CTTCTCCTTTCACATCTTCA+TGG + chr7_3:15721249-15721268 None:intergenic 40.0%
GAAGATGTGAAAGGAGAAGA+AGG - chr7_3:15721250-15721269 Msa1094280:CDS 40.0%
TACTATAGGTGCACACATCA+AGG - chr7_3:15722356-15722375 Msa1094280:CDS 40.0%
ACTATAGGTGCACACATCAA+GGG - chr7_3:15722357-15722376 Msa1094280:CDS 40.0%
CAACGGTTAACCAAAGATGA+GGG - chr7_3:15722401-15722420 Msa1094280:CDS 40.0%
AACCAAAGATGAGGGATTAG+TGG - chr7_3:15722409-15722428 Msa1094280:CDS 40.0%
! TGTTGAATAAATAGTGGGGG+CGG + chr7_3:15720971-15720990 None:intergenic 40.0%
!! AAGAAAATGGACTAGGAGGA+TGG + chr7_3:15721032-15721051 None:intergenic 40.0%
TCAAACCACTCGTTGGAATT+CGG + chr7_3:15721159-15721178 None:intergenic 40.0%
ATTCCAACGAGTGGTTTGAA+TGG - chr7_3:15721160-15721179 Msa1094280:three_prime_UTR 40.0%
CATGACCATGAAGATGTGAA+AGG - chr7_3:15721241-15721260 Msa1094280:CDS 40.0%
CTTCTCCTTTCACATCTTCA+TGG + chr7_3:15721249-15721268 None:intergenic 40.0%
GAAGATGTGAAAGGAGAAGA+AGG - chr7_3:15721250-15721269 Msa1094280:CDS 40.0%
TACTATAGGTGCACACATCA+AGG - chr7_3:15722356-15722375 Msa1094280:CDS 40.0%
ACTATAGGTGCACACATCAA+GGG - chr7_3:15722357-15722376 Msa1094280:CDS 40.0%
CAACGGTTAACCAAAGATGA+GGG - chr7_3:15722401-15722420 Msa1094280:CDS 40.0%
AACCAAAGATGAGGGATTAG+TGG - chr7_3:15722409-15722428 Msa1094280:CDS 40.0%
!! AAATGGACTAGGAGGATGGT+AGG + chr7_3:15721028-15721047 None:intergenic 45.0%
AGGAGGACAAGGAAACAACA+TGG + chr7_3:15721125-15721144 None:intergenic 45.0%
TAGCTTGAAGAAGGAGGACA+AGG + chr7_3:15721136-15721155 None:intergenic 45.0%
ATTCGGTAGCTTGAAGAAGG+AGG + chr7_3:15721142-15721161 None:intergenic 45.0%
GGAATTCGGTAGCTTGAAGA+AGG + chr7_3:15721145-15721164 None:intergenic 45.0%
TGACCATTCAAACCACTCGT+TGG + chr7_3:15721166-15721185 None:intergenic 45.0%
GCAACGGTTAACCAAAGATG+AGG - chr7_3:15722400-15722419 Msa1094280:CDS 45.0%
CACCACTAATCCCTCATCTT+TGG + chr7_3:15722414-15722433 None:intergenic 45.0%
!! AAATGGACTAGGAGGATGGT+AGG + chr7_3:15721028-15721047 None:intergenic 45.0%
AGGAGGACAAGGAAACAACA+TGG + chr7_3:15721125-15721144 None:intergenic 45.0%
TAGCTTGAAGAAGGAGGACA+AGG + chr7_3:15721136-15721155 None:intergenic 45.0%
ATTCGGTAGCTTGAAGAAGG+AGG + chr7_3:15721142-15721161 None:intergenic 45.0%
GGAATTCGGTAGCTTGAAGA+AGG + chr7_3:15721145-15721164 None:intergenic 45.0%
TGACCATTCAAACCACTCGT+TGG + chr7_3:15721166-15721185 None:intergenic 45.0%
GCAACGGTTAACCAAAGATG+AGG - chr7_3:15722400-15722419 Msa1094280:CDS 45.0%
CACCACTAATCCCTCATCTT+TGG + chr7_3:15722414-15722433 None:intergenic 45.0%
!!! GTTTAAAATATAATTTAAAT+TGG - chr7_3:15722112-15722131 Msa1094280:intron 5.0%
!!! GTTTAAAATATAATTTAAAT+TGG - chr7_3:15722112-15722131 Msa1094280:intron 5.0%
AGCTACCGAATTCCAACGAG+TGG - chr7_3:15721151-15721170 Msa1094280:three_prime_UTR 50.0%
TGCGGCTGCTAAGTTTGACT+AGG - chr7_3:15721546-15721565 Msa1094280:intron 50.0%
AGCTACCGAATTCCAACGAG+TGG - chr7_3:15721151-15721170 Msa1094280:three_prime_UTR 50.0%
TGCGGCTGCTAAGTTTGACT+AGG - chr7_3:15721546-15721565 Msa1094280:intron 50.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 15720967 15722757 15720967 ID=Msa1094280;Name=Msa1094280
chr7_3 mRNA 15720967 15722757 15720967 ID=Msa1094280-mRNA-1;Parent=Msa1094280;Name=Msa1094280-mRNA-1;_AED=0.02;_eAED=0.02;_QI=139|1|1|1|1|1|2|228|170
chr7_3 exon 15720967 15721372 15720967 ID=Msa1094280-mRNA-1:exon:3540;Parent=Msa1094280-mRNA-1
chr7_3 exon 15722284 15722757 15722284 ID=Msa1094280-mRNA-1:exon:3539;Parent=Msa1094280-mRNA-1
chr7_3 five_prime_UTR 15722619 15722757 15722619 ID=Msa1094280-mRNA-1:five_prime_utr;Parent=Msa1094280-mRNA-1
chr7_3 CDS 15722284 15722618 15722284 ID=Msa1094280-mRNA-1:cds;Parent=Msa1094280-mRNA-1
chr7_3 CDS 15721195 15721372 15721195 ID=Msa1094280-mRNA-1:cds;Parent=Msa1094280-mRNA-1
chr7_3 three_prime_UTR 15720967 15721194 15720967 ID=Msa1094280-mRNA-1:three_prime_utr;Parent=Msa1094280-mRNA-1
Gene Sequence

>Msa1094280

ATGGAGAACAATTATTCCATGTTGTTTCCTTGTCCTCCTTCTTCAAGCTACCGAATTCCAACGAGTGGTTTGAATGGTCAAAGCTCAAATGCATTTCTTGGTTTGAAACCTACCAATAATGAAATTAGTGTTAATCATGACCATGAAGATGTGAAAGGAGAAGAAGGGAGTGTTAATGTTAGTATTGATCAACAAGGTGTTAAAAAGAAAGGTGAGAAAAAGGCTAAGAAGCCTAAATATGCTTTTCAAACTAGGAGTCAAGTTGATATACTTGATGATGGTTATAGATGGAGGAAATATGGTCAAAAAGCTGTTAAAAACAACAAATTTCCCAGGAGCTACTATAGGTGCACACATCAAGGGTGCAATGTAAAGAAACAAGTGCAACGGTTAACCAAAGATGAGGGATTAGTGGTGACAACATATGAAGGAGTGCATACTCACCCTATTGAGAAGACAACTGATAACTTTGAGCATATTTTGAGTCAGATGCAAATATACACTCCCTTCTAA
Protein sequence

>Msa1094280

MENNYSMLFPCPPSSSYRIPTSGLNGQSSNAFLGLKPTNNEISVNHDHEDVKGEEGSVNVSIDQQGVKKKGEKKAKKPKYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGLVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF*