AlfalfaGEDB | Msa1030980

M. sativa cultivar zhongmu-4 / Msa1030980

KEGG: -
GO: GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030980	XP_003624516.2	94.286	1050	59	1	16	1065	16	1064	0.0	1993

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030980	sp\|Q9S7I6\|RPK2_ARATH	43.295	1141	542	22	10	1064	26	1147	0.0	793

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030980	G7KXB0	94.286	1050	59	1	16	1065	16	1064	0.0	1993

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0136650	Msa1030980	0.807434	5.064938e-50	-8.615850e-47
Msa0267110	Msa1030980	0.802755	4.826594e-49	-8.615850e-47
Msa0298500	Msa1030980	0.808014	3.812991e-50	-8.615850e-47
Msa0349710	Msa1030980	0.803514	3.361042e-49	-8.615850e-47
Msa0380620	Msa1030980	0.801671	8.065418e-49	-8.615850e-47
Msa0430260	Msa1030980	0.803794	2.940757e-49	-8.615850e-47
Msa0500380	Msa1030980	0.801096	1.058091e-48	-8.615850e-47
Msa0527860	Msa1030980	0.833299	5.777316e-56	-8.615850e-47
Msa0582450	Msa1030980	0.829421	5.198068e-55	-8.615850e-47
Msa0586190	Msa1030980	0.828110	1.078514e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030980	MtrunA17_Chr7g0252301	94.286	1050	59	1	16	1065	83	1131	0.0	1991
Msa1030980	MtrunA17_Chr6g0454621	43.953	1108	522	17	29	1064	28	1108	0.0	805
Msa1030980	MtrunA17_Chr6g0454661	44.192	1102	527	16	29	1064	28	1107	0.0	799
Msa1030980	MtrunA17_Chr1g0169841	31.521	1085	623	31	44	1057	48	1083	7.71e-139	446
Msa1030980	MtrunA17_Chr1g0197051	32.485	1139	638	35	1	1060	1	1087	2.53e-136	439
Msa1030980	MtrunA17_Chr2g0312651	34.226	1008	544	27	86	1060	161	1082	9.94e-134	433
Msa1030980	MtrunA17_Chr1g0189871	30.872	1124	650	29	5	1060	12	1076	1.34e-131	427
Msa1030980	MtrunA17_Chr5g0400681	30.930	1054	588	27	33	1063	30	966	2.00e-131	424
Msa1030980	MtrunA17_Chr8g0375511	31.164	1168	638	36	5	1063	16	1126	4.46e-131	426
Msa1030980	MtrunA17_Chr2g0334191	30.864	1134	634	27	9	1060	3	1068	3.84e-130	422

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030980	AT3G02130.1	43.295	1141	542	22	10	1064	26	1147	0.0	793
Msa1030980	AT3G02130.2	43.295	1141	542	22	10	1064	9	1130	0.0	793
Msa1030980	AT1G17230.1	32.944	1114	612	33	26	1064	23	1076	1.63e-143	459
Msa1030980	AT1G17230.2	32.944	1114	612	33	26	1064	23	1076	4.22e-143	459
Msa1030980	AT5G63930.2	34.549	987	561	22	86	1057	95	1011	4.49e-137	440
Msa1030980	AT5G63930.2	28.725	557	333	12	146	675	11	530	2.12e-46	181
Msa1030980	AT5G63930.2	34.118	170	109	2	518	687	38	204	8.53e-18	89.7
Msa1030980	AT5G63930.2	33.333	138	92	0	538	675	9	146	4.34e-17	87.4
Msa1030980	AT5G63930.2	30.909	165	113	1	511	675	7	170	1.49e-14	79.3
Msa1030980	AT5G63930.1	32.625	1082	620	29	39	1057	40	1075	2.82e-136	439

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Find 249 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAACAGCACTTCATA+AGG	0.469772	7_1:+65251756	None:intergenic
AAACAATTACTTAGCTCATT+AGG	0.211793	7_1:+65251897	None:intergenic
AAACCGAAATAAGGACGCTT+GGG	0.491779	7_1:-65250177	Msa1030980:CDS
AAAGCCGATGTTTACAGTTA+CGG	0.484757	7_1:-65249764	Msa1030980:CDS
AAATATTCCCATCCACCAAA+AGG	0.452953	7_1:+65252006	None:intergenic
AAATGTGCCCGCCACATCAG+TGG	0.605484	7_1:+65249832	None:intergenic
AACAATTACTTAGCTCATTA+GGG	0.284841	7_1:+65251898	None:intergenic
AACAGTTTGAAACCGAAATA+AGG	0.353419	7_1:-65250186	Msa1030980:CDS
AACATCTAGTTGAACAAGAT+TGG	0.398788	7_1:+65250696	None:intergenic
AACCAGAGAGAAGATTTGAA+GGG	0.642541	7_1:+65252537	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCAGAATTTGAAAGATGAA+CGG	+	chr7_1:65249657-65249676	None:intergenic	30.0%
TCTATTCCTTTGAATGATTC+TGG	-	chr7_1:65250039-65250058	Msa1030980:CDS	30.0%
AGTTTCTACATTTCCCAATT+TGG	+	chr7_1:65250128-65250147	None:intergenic	30.0%
TTTCAAGAGAATGCTTTCAT+CGG	-	chr7_1:65250810-65250829	Msa1030980:CDS	30.0%
TTATCTCCAACAAAGAACAA+TGG	+	chr7_1:65250903-65250922	None:intergenic	30.0%
TTGACTGGAAACAAATTATC+GGG	-	chr7_1:65251197-65251216	Msa1030980:CDS	30.0%
AATATGAAATGGATGCTTCT+AGG	-	chr7_1:65251251-65251270	Msa1030980:CDS	30.0%
GAGATACATTCAAAACAACA+AGG	+	chr7_1:65251328-65251347	None:intergenic	30.0%
TAGATCACAACAATCTTTCT+GGG	-	chr7_1:65251414-65251433	Msa1030980:CDS	30.0%
AACATCTAGTTGAACAAGAT+TGG	+	chr7_1:65251468-65251487	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	65249493	65252690	65249493	ID=Msa1030980;Name=Msa1030980
chr7_1	mRNA	65249493	65252690	65249493	ID=Msa1030980-mRNA-1;Parent=Msa1030980;Name=Msa1030980-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|1065
chr7_1	exon	65249493	65252690	65249493	ID=Msa1030980-mRNA-1:exon:14502;Parent=Msa1030980-mRNA-1
chr7_1	CDS	65249493	65252690	65249493	ID=Msa1030980-mRNA-1:cds;Parent=Msa1030980-mRNA-1

Gene Sequence

>Msa1030980

ATGGGTCATCATTTTCTTCATCTTCTTCTATGTCTTCTCTTCTTCACTACCCATCACGCAAATGCCTTCAATCCTTCAATTCCCAACGACGCATTGTCTCTTCTCACCTTCAAACGCTTTGTCTCTTCCGACCCTTCAAATCTTCTCTCTGGTTGGAGCCACCGTTCATCTTTCAAATTCTGCAACTGGCACGGCGTCACTTGCGGCGGTGGAGACGGTAGAGTGACTGAACTTAATGTTACCGGTCTTCGCGGCGGTGAATTGGTGTCTGACATTGGAGATTTGTCTGAGCTAAGAGTATTGTCTCTTCCCGGAAACATGTTTTCCGGCGAGATTCCGGTGAGTTTGGTGAATCTCCGGGGGCTTGAGGTTCTTGAGCTTCAAGGAAACAACTTTTCAGGGAAAGTGCCTTTTCAGATGAGTTATTTTGAATCAGTTTTTCTTGTTAATCTATCTGGTAATGCTTTTTCTGGTGAAATTCCAAATGGGTTGGTTTTTTCTAGGAATTTGGAAATTGTTGATTTGTCTAATAATCAATTTTCTGGTTCTATTCCTTTGAATGATTCTGGTAGTTGTGATTCTTTGAAGCATTTGAAACTTTCGCATAATTTTTTGACTGGTGAGATTCCACACCAAATTGGGAAATGTAGAAACTTGAGGACCCTTTTGGTGGATGGGAATATTTTGGATGGTGAAATCCCTCGTGAGATTGGGGATGTTGTTGAACTTAGAGTTCTTGATGTTTCTAGAAATAGCCTCACTGGAAGGATCCCTAATGAGCTAAGTAATTGTTTGAAATTGTCTGTGCTTGTGCTTACTGATTTGTATGAGGATCACCGCGGTTCGAATGATGGAGGTTTGTTGGAGGACAGTAGGTTTAGAGGTGAATTTAATGCTTTTGTTGGGAATATTCCTTATGAAGTGCTGTTGCTTTTGAGTTTGCGGGTTTTGTGGGCGCCTCGAGCGAATCTCGGTGGACGGTTGCCTGCTGCTGGATGGTCAGATTCGTGTTCTCTTAAGGTACTCAATTTGGCACAGAATTATGTTACTGGTGTTGTGCCTGAGAGTTTCGGGATGTGTAGGAATCTAACTTTCTTGGACTTGAGCTCTAACAATTTAGTGGGACATCTGCCTTTGCAGCATCTTCGGGTTCCTTGTATGATGTATTTCAATCTAAGTAGGAATAATATATCTGGCATGCTTCCAGGGTTTATGAAAGAAAGGTGTCGATCGAGTAGCACCCTTGCTGCACTCAAACCTGAATTCCTAGAATTGGAAGGTTTGAATGATGCATACTTTAACATTCGTTGTTTGAGATTTCAAGAGAATGCTTTCATCGGTTCAGGTTTTGAAGAGACTGTTGTCGTTCGCCATGACTTCAGCTTGAACAGTTTTGTGGGGCCTTTACCATTGTTCTTTGTTGGAGATAATCTTTTTACTGAAAATGAAAATCGTAACGTATCGTACATGTTGTCTCTCAATAATAATAAATTCAATGGAACACTTCCATACCGACTAGTTTCAAACTGCAATGACCTCAAGACATTGTTGGTTAACCTGAGTGTGAACCAACTATGCGGGGAGATTTCCCAAGCGTTGTTTCTGAACTGTCCGCATTTGATGGATTTTGAAGCGGCATACAATCAAATTGACGGATCAATTGAACCTGGTATAGGTGAGTTGGCATTTCTTCGGCGTCTTGATTTGACTGGAAACAAATTATCGGGAGAACTGCCTAATCAGTTGGGAAACTTAAAAAATATGAAATGGATGCTTCTAGGAGGAAACAATCTTACAGGCGAAATTCCTTACCAACTTGGTAGATTGACTTCCCTTGTTGTTTTGAATGTATCTCACAATTCGCTAATCGGAATAATTCCATCAAGTTTGTCAAATGCCATAAGTCTTGAAATTATGTTGCTAGATCACAACAATCTTTCTGGGGAAATACCTCTATCGGTTTCTGCTCTTTCCAATCTTGTTCAACTAGATGTTTCATTCAACAATCTTTCCGGTCATATTCCTCCTCTTCAACACCCGAGTGATTGTGATTCATATAAAGGGAATCAACACCTGCACTCTTGCCCTGATCCATACTTTGACTCACCTGCTTCTCTCCCAGCTCCTCTTGCAGTCAAGAATTCACATAGTCGTCGTAGATGGAGGAAAGTAAGGACTGTGGTTATTACAGTGTCCGCTTGTGCTTTGGTGGGTCTATGCGCACTTTTGGGATTAGTGTTGGTGATTTGTTGCAGAAAGAGTAAACTTACTCGGCTTAGCAGCATTAGAAGGCGAGAAGTGGTGACCTTTCAAGTTGTTCCAATTGAATTGAGTTACGACAGTGTGGTCACAACTACCGGAAATTTCAGCATCCGGTATCTAATTGGCACAGGTGGCTTTGGATCAACTTACAAAGCAGAGCTATCACCGGGTTTTCTTGTTGCCATAAAGAGGCTTTCAATTGGTAGATTTCAAGGCATGCAACAGTTTGAAACCGAAATAAGGACGCTTGGGAGAATTCGACACAAGAATCTCGTGACTCTAATTGGCTATTACGTAGGAAAAGCTGAAATGCTGTTAATTTACAATTACCTCTCTGGTGGAAACCTTGAAGCTTTCATACATGATAGATCAGGGAAAAATGTGCAGTGGCCGGTTATTTACAAAATAGCAAAAGACATCGCTGAGGCCCTTGCTTACCTTCATTACTCTTGTGTTCCTCGCATAGTTCACCGAGATATCAAGCCTAGCAACATTTTACTCGACGAAGATCTTAATGCGTACCTGTCTGATTTTGGCTTGGCGCGGCTGCTGGAGGTATCCGAGACTCATGCCACCACTGATGTGGCGGGCACATTTGGTTATGTTGCGCCTGAATACGCCACCACCTGTAGGGTTTCTGACAAAGCCGATGTTTACAGTTACGGTGTAGTGCTGTTAGAATTGATATCAGGAAGAAGGTCACTTGATCCATCGTTTTCTGATTATGGAAATGGATTCAATATAGTACCATGGGCGGAGCTTCTAATGACCGAAGGTCGTTGTTCGGAGCTGTTTTCATCGGCTTTGTGGGAAGTAGGGCCCAAGGAAAAGTTGCTAGGGCTTTTAAAGATTGCATTAACTTGCACAGAAGAGACTCTTTCTATTCGACCGTCGATGAAGTATGTTCTCGACAAATTGAAACAGTTGAAAAGTTGA

Protein sequence

>Msa1030980

MGHHFLHLLLCLLFFTTHHANAFNPSIPNDALSLLTFKRFVSSDPSNLLSGWSHRSSFKFCNWHGVTCGGGDGRVTELNVTGLRGGELVSDIGDLSELRVLSLPGNMFSGEIPVSLVNLRGLEVLELQGNNFSGKVPFQMSYFESVFLVNLSGNAFSGEIPNGLVFSRNLEIVDLSNNQFSGSIPLNDSGSCDSLKHLKLSHNFLTGEIPHQIGKCRNLRTLLVDGNILDGEIPREIGDVVELRVLDVSRNSLTGRIPNELSNCLKLSVLVLTDLYEDHRGSNDGGLLEDSRFRGEFNAFVGNIPYEVLLLLSLRVLWAPRANLGGRLPAAGWSDSCSLKVLNLAQNYVTGVVPESFGMCRNLTFLDLSSNNLVGHLPLQHLRVPCMMYFNLSRNNISGMLPGFMKERCRSSSTLAALKPEFLELEGLNDAYFNIRCLRFQENAFIGSGFEETVVVRHDFSLNSFVGPLPLFFVGDNLFTENENRNVSYMLSLNNNKFNGTLPYRLVSNCNDLKTLLVNLSVNQLCGEISQALFLNCPHLMDFEAAYNQIDGSIEPGIGELAFLRRLDLTGNKLSGELPNQLGNLKNMKWMLLGGNNLTGEIPYQLGRLTSLVVLNVSHNSLIGIIPSSLSNAISLEIMLLDHNNLSGEIPLSVSALSNLVQLDVSFNNLSGHIPPLQHPSDCDSYKGNQHLHSCPDPYFDSPASLPAPLAVKNSHSRRRWRKVRTVVITVSACALVGLCALLGLVLVICCRKSKLTRLSSIRRREVVTFQVVPIELSYDSVVTTTGNFSIRYLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGMQQFETEIRTLGRIRHKNLVTLIGYYVGKAEMLLIYNYLSGGNLEAFIHDRSGKNVQWPVIYKIAKDIAEALAYLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSYGVVLLELISGRRSLDPSFSDYGNGFNIVPWAELLMTEGRCSELFSSALWEVGPKEKLLGLLKIALTCTEETLSIRPSMKYVLDKLKQLKS*